Query 018638
Match_columns 352
No_of_seqs 366 out of 1201
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.5E-69 5.3E-74 488.7 25.9 237 90-344 1-238 (240)
2 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-66 5.1E-71 475.5 25.7 248 89-352 6-255 (263)
3 COG1135 AbcC ABC-type metal io 100.0 3.7E-64 8.1E-69 475.1 24.7 239 91-346 1-246 (339)
4 COG1125 OpuBA ABC-type proline 100.0 2.3E-63 5E-68 458.7 23.3 236 91-345 1-239 (309)
5 COG3842 PotA ABC-type spermidi 100.0 8.3E-63 1.8E-67 480.2 24.1 234 90-343 4-238 (352)
6 COG3839 MalK ABC-type sugar tr 100.0 5.4E-61 1.2E-65 465.2 26.2 233 91-344 3-236 (338)
7 COG1116 TauB ABC-type nitrate/ 100.0 1E-59 2.2E-64 435.5 24.9 211 90-324 2-214 (248)
8 COG1120 FepC ABC-type cobalami 100.0 3.1E-59 6.6E-64 438.0 24.8 231 91-342 2-236 (258)
9 COG1118 CysA ABC-type sulfate/ 100.0 1E-59 2.2E-64 444.3 20.3 236 90-343 1-239 (345)
10 COG1117 PstB ABC-type phosphat 100.0 3.9E-59 8.5E-64 421.2 21.4 238 89-346 5-252 (253)
11 COG1136 SalX ABC-type antimicr 100.0 4.6E-58 1E-62 422.6 26.6 213 91-322 1-221 (226)
12 COG1124 DppF ABC-type dipeptid 100.0 2.4E-58 5.2E-63 423.8 24.0 236 90-345 2-245 (252)
13 TIGR02314 ABC_MetN D-methionin 100.0 5.1E-57 1.1E-61 442.2 30.9 236 91-344 1-243 (343)
14 COG2884 FtsE Predicted ATPase 100.0 6.3E-58 1.4E-62 406.8 21.1 217 91-325 1-219 (223)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.8E-57 3.8E-62 424.5 24.7 220 90-333 3-228 (254)
16 COG3638 ABC-type phosphate/pho 100.0 9.3E-58 2E-62 417.8 21.5 226 90-331 2-236 (258)
17 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-56 2.4E-61 442.0 29.9 231 91-343 3-236 (356)
18 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-56 3.5E-61 415.4 28.6 231 92-339 1-233 (235)
19 PRK11432 fbpC ferric transport 100.0 2E-56 4.4E-61 439.4 30.9 232 90-343 5-238 (351)
20 TIGR03265 PhnT2 putative 2-ami 100.0 2.5E-56 5.5E-61 439.1 30.6 232 90-343 3-236 (353)
21 PRK09452 potA putrescine/sperm 100.0 4E-56 8.6E-61 440.6 30.7 237 85-343 8-246 (375)
22 TIGR03258 PhnT 2-aminoethylpho 100.0 9.7E-56 2.1E-60 436.1 30.3 230 92-343 6-240 (362)
23 PRK10851 sulfate/thiosulfate t 100.0 1.4E-55 3.1E-60 433.7 30.5 232 91-343 2-238 (353)
24 COG1122 CbiO ABC-type cobalt t 100.0 6E-56 1.3E-60 413.2 24.7 224 90-332 2-228 (235)
25 PRK13537 nodulation ABC transp 100.0 2.1E-55 4.5E-60 424.8 29.1 222 89-331 5-226 (306)
26 COG0411 LivG ABC-type branched 100.0 2.4E-56 5.3E-61 410.7 21.1 236 90-344 3-249 (250)
27 PRK11607 potG putrescine trans 100.0 5.4E-55 1.2E-59 432.9 31.3 233 89-343 17-251 (377)
28 PRK15079 oligopeptide ABC tran 100.0 6E-55 1.3E-59 425.9 30.9 239 89-344 6-264 (331)
29 COG1131 CcmA ABC-type multidru 100.0 3.7E-55 8E-60 420.8 27.3 221 90-330 3-224 (293)
30 COG4175 ProV ABC-type proline/ 100.0 7.3E-56 1.6E-60 419.1 21.0 237 91-344 4-267 (386)
31 PRK11000 maltose/maltodextrin 100.0 1.2E-54 2.6E-59 429.5 30.5 231 91-343 3-235 (369)
32 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-55 4.2E-60 388.7 21.3 221 91-334 1-221 (231)
33 PRK09493 glnQ glutamine ABC tr 100.0 2.6E-54 5.7E-59 401.8 29.5 236 91-343 1-237 (240)
34 PRK11153 metN DL-methionine tr 100.0 2.9E-54 6.3E-59 423.0 31.2 235 91-343 1-242 (343)
35 PRK11831 putative ABC transpor 100.0 3.4E-54 7.4E-59 408.6 30.6 237 90-343 6-244 (269)
36 PRK13536 nodulation factor exp 100.0 2.2E-54 4.7E-59 423.4 29.9 223 88-331 38-260 (340)
37 cd03296 ABC_CysA_sulfate_impor 100.0 4.2E-54 9E-59 400.5 30.1 231 91-342 2-237 (239)
38 PRK11308 dppF dipeptide transp 100.0 3.7E-54 8E-59 419.8 31.1 239 89-344 3-257 (327)
39 cd03219 ABC_Mj1267_LivG_branch 100.0 2.2E-54 4.9E-59 400.7 27.7 222 92-331 1-231 (236)
40 TIGR00960 3a0501s02 Type II (G 100.0 2.2E-54 4.7E-59 396.0 26.1 213 91-321 1-216 (216)
41 TIGR01288 nodI ATP-binding ABC 100.0 3.8E-54 8.2E-59 415.1 28.9 222 89-331 2-223 (303)
42 cd03265 ABC_DrrA DrrA is the A 100.0 3.6E-54 7.7E-59 396.0 27.3 217 92-329 1-218 (220)
43 TIGR01186 proV glycine betaine 100.0 2.4E-54 5.3E-59 425.9 28.0 228 99-344 1-232 (363)
44 COG0444 DppD ABC-type dipeptid 100.0 3E-54 6.5E-59 411.2 27.1 238 91-344 1-256 (316)
45 TIGR02769 nickel_nikE nickel i 100.0 9E-54 2E-58 404.7 30.0 240 91-348 2-255 (265)
46 PRK11264 putative amino-acid A 100.0 8.2E-54 1.8E-58 400.4 29.4 236 91-343 3-245 (250)
47 cd03259 ABC_Carb_Solutes_like 100.0 4.5E-54 9.7E-59 393.1 26.8 212 92-325 1-213 (213)
48 TIGR00972 3a0107s01c2 phosphat 100.0 1.4E-53 3E-58 398.8 30.2 235 91-344 1-245 (247)
49 cd03218 ABC_YhbG The ABC trans 100.0 8.8E-54 1.9E-58 395.7 28.5 221 92-331 1-221 (232)
50 PRK11022 dppD dipeptide transp 100.0 1.1E-53 2.3E-58 416.3 30.5 236 91-343 3-255 (326)
51 cd03258 ABC_MetN_methionine_tr 100.0 6.4E-54 1.4E-58 397.2 27.4 223 91-331 1-229 (233)
52 PRK09473 oppD oligopeptide tra 100.0 1.4E-53 2.9E-58 416.3 31.1 239 89-344 10-264 (330)
53 COG4555 NatA ABC-type Na+ tran 100.0 2.7E-55 5.9E-60 393.2 16.4 220 91-331 1-221 (245)
54 PRK10619 histidine/lysine/argi 100.0 3E-53 6.6E-58 398.9 31.1 240 90-346 4-256 (257)
55 COG1137 YhbG ABC-type (unclass 100.0 1.8E-55 3.9E-60 393.9 14.6 235 90-344 3-238 (243)
56 PRK11124 artP arginine transpo 100.0 2.5E-53 5.3E-58 395.7 29.6 235 91-342 2-240 (242)
57 PRK10070 glycine betaine trans 100.0 1.8E-53 3.8E-58 424.5 30.1 237 90-344 3-267 (400)
58 PRK13637 cbiO cobalt transport 100.0 1.9E-53 4.1E-58 407.5 29.1 222 91-331 2-233 (287)
59 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-53 2.8E-58 393.8 26.8 219 92-329 1-226 (227)
60 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-53 3.3E-58 425.2 28.7 224 90-332 2-228 (402)
61 cd03301 ABC_MalK_N The N-termi 100.0 2.4E-53 5.2E-58 388.0 27.6 212 92-325 1-213 (213)
62 cd03266 ABC_NatA_sodium_export 100.0 1.7E-53 3.8E-58 390.2 26.3 214 91-325 1-218 (218)
63 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-53 3.3E-58 391.4 25.9 219 92-331 1-220 (222)
64 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-53 2.6E-58 397.4 24.9 223 91-330 1-233 (243)
65 TIGR03005 ectoine_ehuA ectoine 100.0 5.3E-53 1.2E-57 396.0 29.4 236 92-344 1-249 (252)
66 PRK15093 antimicrobial peptide 100.0 4.6E-53 1E-57 412.4 30.1 238 90-344 2-261 (330)
67 cd03256 ABC_PhnC_transporter A 100.0 2.2E-53 4.7E-58 394.9 26.2 222 92-330 1-232 (241)
68 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.1E-53 1.1E-57 388.3 28.4 211 92-327 1-218 (220)
69 PRK14273 phosphate ABC transpo 100.0 6.7E-53 1.5E-57 395.7 29.7 236 90-344 6-251 (254)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.5E-53 1.4E-57 393.2 29.1 232 92-343 1-237 (242)
71 PRK13647 cbiO cobalt transport 100.0 4.8E-53 1E-57 402.1 28.2 221 90-330 3-225 (274)
72 PRK11629 lolD lipoprotein tran 100.0 1E-52 2.2E-57 389.8 29.6 218 90-326 4-228 (233)
73 PRK10895 lipopolysaccharide AB 100.0 4.6E-53 1E-57 393.6 27.4 224 91-332 3-226 (241)
74 PRK14268 phosphate ABC transpo 100.0 1E-52 2.2E-57 395.8 30.1 236 89-344 10-255 (258)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.9E-53 6.3E-58 388.8 25.4 211 92-321 1-218 (218)
76 cd03263 ABC_subfamily_A The AB 100.0 3.8E-53 8.2E-58 388.5 26.2 217 92-330 1-219 (220)
77 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-52 2.3E-57 391.1 29.5 224 90-332 1-231 (242)
78 COG1123 ATPase components of v 100.0 2.3E-53 5.1E-58 430.4 27.1 241 88-345 277-533 (539)
79 PRK14242 phosphate transporter 100.0 1.4E-52 3.1E-57 393.0 30.2 236 89-343 4-249 (253)
80 cd03262 ABC_HisP_GlnQ_permease 100.0 5.2E-53 1.1E-57 385.5 26.3 213 92-321 1-213 (213)
81 PRK13634 cbiO cobalt transport 100.0 6.8E-53 1.5E-57 404.2 28.3 221 92-331 3-234 (290)
82 TIGR03522 GldA_ABC_ATP gliding 100.0 6.7E-53 1.5E-57 406.2 28.2 219 91-331 2-220 (301)
83 TIGR02673 FtsE cell division A 100.0 5.9E-53 1.3E-57 385.7 26.3 212 91-320 1-214 (214)
84 PRK13651 cobalt transporter AT 100.0 7E-53 1.5E-57 407.1 28.0 223 91-332 2-254 (305)
85 PRK13643 cbiO cobalt transport 100.0 8.7E-53 1.9E-57 403.1 28.4 223 91-332 1-233 (288)
86 PRK10908 cell division protein 100.0 1.1E-52 2.5E-57 386.4 27.6 215 91-323 1-217 (222)
87 cd03268 ABC_BcrA_bacitracin_re 100.0 5.7E-53 1.2E-57 384.5 25.1 208 92-325 1-208 (208)
88 PRK11300 livG leucine/isoleuci 100.0 1.3E-52 2.8E-57 393.5 28.2 224 90-331 4-242 (255)
89 COG4598 HisP ABC-type histidin 100.0 2.9E-54 6.2E-59 380.9 15.6 237 90-343 5-253 (256)
90 cd03264 ABC_drug_resistance_li 100.0 7.5E-53 1.6E-57 384.5 25.6 211 92-325 1-211 (211)
91 PRK13631 cbiO cobalt transport 100.0 1.4E-52 3E-57 407.6 29.0 227 87-332 17-265 (320)
92 COG0410 LivF ABC-type branched 100.0 6.9E-53 1.5E-57 385.1 25.2 232 90-342 2-234 (237)
93 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8.1E-53 1.8E-57 399.3 26.6 233 93-343 26-262 (269)
94 cd03269 ABC_putative_ATPase Th 100.0 1.1E-52 2.3E-57 383.3 26.3 210 92-325 1-210 (210)
95 PRK13650 cbiO cobalt transport 100.0 1.2E-52 2.6E-57 400.3 27.5 222 90-332 3-229 (279)
96 cd03292 ABC_FtsE_transporter F 100.0 1.2E-52 2.6E-57 383.4 26.3 212 92-321 1-214 (214)
97 TIGR01188 drrA daunorubicin re 100.0 7.6E-53 1.6E-57 405.9 26.0 212 99-331 1-212 (302)
98 PRK10744 pstB phosphate transp 100.0 3.6E-52 7.9E-57 392.5 30.0 236 90-344 12-257 (260)
99 PRK14267 phosphate ABC transpo 100.0 3.6E-52 7.8E-57 390.3 29.8 236 90-344 3-250 (253)
100 PRK11614 livF leucine/isoleuci 100.0 1.3E-52 2.8E-57 389.7 26.4 222 90-332 4-226 (237)
101 PRK14256 phosphate ABC transpo 100.0 4.9E-52 1.1E-56 389.4 30.5 236 91-344 4-249 (252)
102 cd03257 ABC_NikE_OppD_transpor 100.0 2.2E-52 4.9E-57 384.7 27.3 218 91-325 1-228 (228)
103 PRK14247 phosphate ABC transpo 100.0 4.8E-52 1E-56 388.8 29.7 234 91-344 3-247 (250)
104 PRK13638 cbiO cobalt transport 100.0 1.7E-52 3.6E-57 397.2 26.9 224 91-332 1-225 (271)
105 PRK13636 cbiO cobalt transport 100.0 2.8E-52 6E-57 398.5 28.6 224 90-332 4-231 (283)
106 PRK15112 antimicrobial peptide 100.0 3.9E-52 8.5E-57 394.1 29.2 237 89-344 2-252 (267)
107 PRK13641 cbiO cobalt transport 100.0 3E-52 6.4E-57 399.1 28.6 222 91-331 2-233 (287)
108 PRK14274 phosphate ABC transpo 100.0 6.1E-52 1.3E-56 390.5 30.2 237 89-344 10-256 (259)
109 PRK10575 iron-hydroxamate tran 100.0 2.7E-52 5.9E-57 394.6 27.8 226 88-332 8-237 (265)
110 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.6E-52 1E-56 386.0 28.9 220 91-332 1-221 (236)
111 PRK14248 phosphate ABC transpo 100.0 6.1E-52 1.3E-56 392.6 30.2 240 86-344 16-265 (268)
112 TIGR02211 LolD_lipo_ex lipopro 100.0 2.8E-52 6.1E-57 383.0 27.1 213 91-322 1-220 (221)
113 PRK14270 phosphate ABC transpo 100.0 6.4E-52 1.4E-56 388.4 30.0 236 90-344 3-248 (251)
114 PRK13548 hmuV hemin importer A 100.0 3.6E-52 7.7E-57 392.5 28.2 228 91-332 2-230 (258)
115 PRK14250 phosphate ABC transpo 100.0 3.3E-52 7.1E-57 388.7 27.5 229 91-344 3-234 (241)
116 PRK11701 phnK phosphonate C-P 100.0 6.2E-52 1.3E-56 390.3 29.6 238 90-344 5-254 (258)
117 PRK13646 cbiO cobalt transport 100.0 3.2E-52 7E-57 398.7 27.9 223 91-332 2-235 (286)
118 cd03226 ABC_cobalt_CbiO_domain 100.0 9.1E-53 2E-57 382.7 23.0 203 93-322 1-205 (205)
119 PRK10584 putative ABC transpor 100.0 6.6E-52 1.4E-56 382.6 28.6 216 90-324 5-227 (228)
120 PRK14245 phosphate ABC transpo 100.0 9.2E-52 2E-56 387.2 29.9 236 90-344 2-247 (250)
121 PRK14241 phosphate transporter 100.0 8.6E-52 1.9E-56 389.3 29.8 236 91-344 4-255 (258)
122 PRK11248 tauB taurine transpor 100.0 7.5E-52 1.6E-56 390.0 29.2 212 91-327 1-215 (255)
123 PRK11231 fecE iron-dicitrate t 100.0 4.8E-52 1E-56 390.4 27.7 231 91-342 2-235 (255)
124 PRK13644 cbiO cobalt transport 100.0 5.2E-52 1.1E-56 394.9 27.8 222 91-332 1-224 (274)
125 TIGR03415 ABC_choXWV_ATP choli 100.0 2.6E-52 5.7E-57 413.6 26.6 232 95-344 28-267 (382)
126 PRK14235 phosphate transporter 100.0 1.5E-51 3.3E-56 390.0 30.7 237 89-344 17-264 (267)
127 PRK13639 cbiO cobalt transport 100.0 7.3E-52 1.6E-56 394.0 28.4 223 91-332 1-226 (275)
128 TIGR01978 sufC FeS assembly AT 100.0 7E-52 1.5E-56 385.2 27.6 222 92-331 1-233 (243)
129 cd03225 ABC_cobalt_CbiO_domain 100.0 4E-52 8.7E-57 379.4 25.3 208 93-320 1-211 (211)
130 PRK14239 phosphate transporter 100.0 1.5E-51 3.3E-56 385.5 29.8 235 90-343 4-248 (252)
131 TIGR03410 urea_trans_UrtE urea 100.0 6E-52 1.3E-56 383.3 26.4 217 92-330 1-219 (230)
132 PRK13652 cbiO cobalt transport 100.0 1.2E-51 2.7E-56 392.8 28.8 221 90-331 2-226 (277)
133 PRK14269 phosphate ABC transpo 100.0 1.8E-51 3.9E-56 384.6 29.1 233 91-344 2-243 (246)
134 PRK14240 phosphate transporter 100.0 2.4E-51 5.1E-56 384.1 29.7 235 91-344 3-247 (250)
135 PRK13635 cbiO cobalt transport 100.0 1.1E-51 2.4E-56 393.8 27.9 221 90-331 4-228 (279)
136 PRK09984 phosphonate/organopho 100.0 1.4E-51 2.9E-56 388.8 28.1 234 90-343 3-250 (262)
137 PRK10419 nikE nickel transport 100.0 2.9E-51 6.3E-56 388.5 30.3 238 91-345 3-254 (268)
138 PRK11144 modC molybdate transp 100.0 8.9E-52 1.9E-56 406.7 27.7 225 91-342 1-229 (352)
139 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-51 2.6E-56 376.6 26.4 210 92-325 1-211 (211)
140 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-51 2.6E-56 389.5 27.3 209 89-328 10-219 (257)
141 PRK14251 phosphate ABC transpo 100.0 3.2E-51 6.9E-56 383.4 29.7 236 90-344 3-248 (251)
142 PRK14249 phosphate ABC transpo 100.0 3.7E-51 8.1E-56 383.2 30.1 236 90-344 3-248 (251)
143 PRK14272 phosphate ABC transpo 100.0 3.8E-51 8.1E-56 382.9 30.1 237 90-344 3-249 (252)
144 PRK10253 iron-enterobactin tra 100.0 1.3E-51 2.8E-56 390.0 27.2 225 89-332 5-233 (265)
145 cd03235 ABC_Metallic_Cations A 100.0 3.9E-52 8.5E-57 380.3 22.9 208 93-325 1-213 (213)
146 PRK14237 phosphate transporter 100.0 4.4E-51 9.6E-56 386.9 30.8 237 89-344 18-264 (267)
147 PRK10261 glutathione transport 100.0 2.2E-51 4.7E-56 430.9 31.4 239 89-344 311-566 (623)
148 PRK13649 cbiO cobalt transport 100.0 2.5E-51 5.4E-56 390.7 28.3 223 91-332 2-234 (280)
149 PRK10771 thiQ thiamine transpo 100.0 2.4E-51 5.2E-56 380.3 27.3 218 91-332 1-219 (232)
150 TIGR02323 CP_lyasePhnK phospho 100.0 3.9E-51 8.4E-56 383.3 28.6 237 90-343 2-250 (253)
151 PRK14262 phosphate ABC transpo 100.0 5.6E-51 1.2E-55 381.6 29.6 234 91-343 3-246 (250)
152 PRK14261 phosphate ABC transpo 100.0 6.9E-51 1.5E-55 381.9 29.8 237 89-344 4-250 (253)
153 COG2274 SunT ABC-type bacterio 100.0 4.6E-52 1E-56 437.9 24.4 281 4-337 407-701 (709)
154 PRK13632 cbiO cobalt transport 100.0 2.8E-51 6.1E-56 389.0 27.5 223 89-331 5-230 (271)
155 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-51 5.1E-56 385.9 26.7 222 92-332 2-226 (256)
156 PRK10762 D-ribose transporter 100.0 2.3E-51 5.1E-56 420.3 28.5 224 90-331 3-229 (501)
157 PRK13640 cbiO cobalt transport 100.0 3.2E-51 7E-56 391.0 27.5 223 89-332 3-232 (282)
158 PRK14259 phosphate ABC transpo 100.0 4.8E-51 1E-55 387.2 28.5 234 89-344 11-266 (269)
159 TIGR02142 modC_ABC molybdenum 100.0 2.9E-51 6.3E-56 403.3 28.0 215 96-332 4-221 (354)
160 PRK14238 phosphate transporter 100.0 7E-51 1.5E-55 386.5 29.5 237 88-343 21-267 (271)
161 PRK14253 phosphate ABC transpo 100.0 8.1E-51 1.8E-55 380.3 29.5 235 91-345 3-247 (249)
162 PRK14236 phosphate transporter 100.0 1.3E-50 2.8E-55 384.7 31.3 239 87-344 21-269 (272)
163 PRK14255 phosphate ABC transpo 100.0 1.3E-50 2.8E-55 379.6 30.7 236 90-344 4-249 (252)
164 PRK14275 phosphate ABC transpo 100.0 7.4E-51 1.6E-55 389.4 29.4 237 88-343 36-282 (286)
165 PRK13549 xylose transporter AT 100.0 3.1E-51 6.6E-56 419.9 28.4 224 90-331 4-231 (506)
166 COG1123 ATPase components of v 100.0 2.4E-51 5.3E-56 415.7 27.2 239 90-344 4-257 (539)
167 cd03300 ABC_PotA_N PotA is an 100.0 9.2E-51 2E-55 376.6 28.6 229 92-342 1-231 (232)
168 PRK09700 D-allose transporter 100.0 3.6E-51 7.9E-56 419.6 28.2 224 90-331 4-233 (510)
169 cd03297 ABC_ModC_molybdenum_tr 100.0 5.9E-51 1.3E-55 373.1 26.5 210 92-325 2-214 (214)
170 PRK13648 cbiO cobalt transport 100.0 7.2E-51 1.6E-55 385.6 27.8 223 89-332 5-231 (269)
171 PRK13633 cobalt transporter AT 100.0 6.5E-51 1.4E-55 388.4 27.6 221 90-331 3-232 (280)
172 PRK14260 phosphate ABC transpo 100.0 1.2E-50 2.7E-55 381.9 28.9 236 90-344 6-256 (259)
173 PRK15439 autoinducer 2 ABC tra 100.0 7.2E-51 1.6E-55 417.8 29.4 219 90-331 10-228 (510)
174 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-51 2.2E-55 371.6 27.0 211 92-326 1-212 (213)
175 PRK14271 phosphate ABC transpo 100.0 2.4E-50 5.3E-55 384.0 30.7 236 89-344 19-264 (276)
176 PRK14254 phosphate ABC transpo 100.0 3.1E-50 6.7E-55 385.0 31.3 237 87-344 35-282 (285)
177 PRK13645 cbiO cobalt transport 100.0 1E-50 2.2E-55 388.5 27.9 222 91-331 6-239 (289)
178 PRK11174 cysteine/glutathione 100.0 5.2E-51 1.1E-55 424.6 27.9 272 17-342 298-581 (588)
179 PRK13547 hmuV hemin importer A 100.0 8.7E-51 1.9E-55 386.6 26.7 230 91-332 1-244 (272)
180 PRK14244 phosphate ABC transpo 100.0 1.7E-50 3.8E-55 378.7 28.2 232 92-342 6-248 (251)
181 PRK14258 phosphate ABC transpo 100.0 3.3E-50 7.1E-55 379.6 30.1 237 90-344 6-258 (261)
182 TIGR03740 galliderm_ABC gallid 100.0 1.7E-50 3.6E-55 372.3 27.2 210 92-329 1-210 (223)
183 PRK14243 phosphate transporter 100.0 2E-50 4.3E-55 381.8 28.5 235 89-344 8-261 (264)
184 cd03299 ABC_ModC_like Archeal 100.0 2.8E-50 6.2E-55 374.3 28.6 218 92-332 1-219 (235)
185 TIGR00968 3a0106s01 sulfate AB 100.0 3.4E-50 7.3E-55 374.2 28.9 229 92-342 1-231 (237)
186 PRK13642 cbiO cobalt transport 100.0 1.9E-50 4.1E-55 384.6 27.9 222 90-332 3-229 (277)
187 PRK14257 phosphate ABC transpo 100.0 3.4E-50 7.4E-55 392.2 30.2 236 90-345 79-327 (329)
188 COG4152 ABC-type uncharacteriz 100.0 9.9E-52 2.1E-56 379.4 17.9 218 91-332 2-219 (300)
189 PRK10261 glutathione transport 100.0 1.5E-50 3.3E-55 424.5 29.2 238 88-342 9-269 (623)
190 PRK14265 phosphate ABC transpo 100.0 5.8E-50 1.3E-54 380.9 29.5 236 88-344 17-271 (274)
191 COG4988 CydD ABC-type transpor 100.0 7.5E-51 1.6E-55 411.3 24.7 288 4-343 255-553 (559)
192 PRK14246 phosphate ABC transpo 100.0 5.3E-50 1.2E-54 377.9 28.7 237 89-345 8-255 (257)
193 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.4E-50 5.3E-55 426.8 29.5 279 6-342 391-682 (686)
194 PRK14266 phosphate ABC transpo 100.0 8.4E-50 1.8E-54 373.6 28.8 235 91-344 3-247 (250)
195 KOG0058 Peptide exporter, ABC 100.0 5.7E-51 1.2E-55 419.4 22.8 285 6-343 404-702 (716)
196 TIGR02982 heterocyst_DevA ABC 100.0 4.7E-50 1E-54 368.8 26.6 212 92-321 2-219 (220)
197 COG4181 Predicted ABC-type tra 100.0 4.5E-51 9.7E-56 358.0 18.7 216 91-324 6-227 (228)
198 COG1132 MdlB ABC-type multidru 100.0 1.9E-50 4.2E-55 419.0 26.4 283 5-342 267-561 (567)
199 PRK11176 lipid transporter ATP 100.0 2.5E-50 5.5E-55 418.7 26.8 282 7-342 282-576 (582)
200 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-49 3.6E-54 371.8 29.0 221 90-328 6-237 (252)
201 PRK10790 putative multidrug tr 100.0 6.2E-50 1.4E-54 417.0 28.9 267 12-334 287-565 (592)
202 PRK11288 araG L-arabinose tran 100.0 7.8E-50 1.7E-54 409.1 29.1 220 90-327 3-224 (501)
203 PRK15134 microcin C ABC transp 100.0 1E-49 2.3E-54 410.6 30.0 236 90-342 4-257 (529)
204 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.9E-50 6.4E-55 427.6 26.7 282 4-333 407-701 (710)
205 PRK10418 nikD nickel transport 100.0 1.6E-49 3.5E-54 373.3 28.7 228 91-343 4-242 (254)
206 PRK15134 microcin C ABC transp 100.0 6.2E-50 1.3E-54 412.3 28.0 237 88-342 272-526 (529)
207 COG4161 ArtP ABC-type arginine 100.0 1.4E-50 3E-55 352.4 19.3 235 91-342 2-240 (242)
208 PRK10247 putative ABC transpor 100.0 7E-50 1.5E-54 369.4 25.0 216 89-329 5-223 (225)
209 TIGR03608 L_ocin_972_ABC putat 100.0 8.3E-50 1.8E-54 362.6 24.7 204 94-316 1-206 (206)
210 PRK10982 galactose/methyl gala 100.0 6.9E-50 1.5E-54 408.4 27.0 219 94-330 1-221 (491)
211 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-49 2.5E-54 407.5 28.6 222 91-330 1-228 (500)
212 PRK14252 phosphate ABC transpo 100.0 3.7E-49 7.9E-54 373.0 29.7 236 89-344 14-262 (265)
213 COG1129 MglA ABC-type sugar tr 100.0 8E-50 1.7E-54 402.2 26.6 224 89-330 6-233 (500)
214 PRK14264 phosphate ABC transpo 100.0 4.1E-49 8.9E-54 380.6 30.6 240 87-345 41-303 (305)
215 TIGR03375 type_I_sec_LssB type 100.0 6.8E-50 1.5E-54 423.9 27.0 276 4-331 399-687 (694)
216 PRK14263 phosphate ABC transpo 100.0 5.8E-49 1.2E-53 371.6 30.4 235 89-344 6-258 (261)
217 TIGR01193 bacteriocin_ABC ABC- 100.0 7.6E-50 1.6E-54 424.4 26.7 278 4-333 409-698 (708)
218 cd03267 ABC_NatA_like Similar 100.0 2.1E-49 4.7E-54 368.8 25.5 206 99-325 29-236 (236)
219 cd03234 ABCG_White The White s 100.0 3E-49 6.6E-54 364.9 25.8 213 91-325 3-226 (226)
220 COG4559 ABC-type hemin transpo 100.0 4.9E-50 1.1E-54 361.8 19.6 229 91-333 1-231 (259)
221 TIGR00958 3a01208 Conjugate Tr 100.0 1.6E-49 3.5E-54 422.3 27.0 274 5-333 416-703 (711)
222 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-49 2.8E-54 369.3 22.6 217 92-333 1-226 (237)
223 PRK11160 cysteine/glutathione 100.0 4.6E-49 1E-53 409.6 29.0 258 36-342 302-571 (574)
224 PRK15056 manganese/iron transp 100.0 5.4E-49 1.2E-53 373.5 27.0 219 90-331 5-229 (272)
225 cd03251 ABCC_MsbA MsbA is an e 100.0 2.6E-49 5.5E-54 366.4 24.0 216 92-332 1-225 (234)
226 COG4172 ABC-type uncharacteriz 100.0 4E-49 8.8E-54 382.8 26.2 244 86-346 271-531 (534)
227 PRK13543 cytochrome c biogenes 100.0 4.8E-49 1E-53 361.2 25.4 208 85-318 5-212 (214)
228 PRK13538 cytochrome c biogenes 100.0 5.2E-49 1.1E-53 358.2 24.7 202 91-316 1-202 (204)
229 PRK09580 sufC cysteine desulfu 100.0 8.1E-49 1.8E-53 366.0 26.6 221 91-329 1-232 (248)
230 PRK13549 xylose transporter AT 100.0 3E-49 6.4E-54 405.2 25.9 225 89-331 257-493 (506)
231 TIGR02770 nickel_nikD nickel i 100.0 5.8E-49 1.3E-53 364.2 25.4 217 106-344 1-228 (230)
232 TIGR03269 met_CoM_red_A2 methy 100.0 5.5E-49 1.2E-53 404.4 27.6 224 88-330 276-515 (520)
233 COG4525 TauB ABC-type taurine 100.0 2E-49 4.3E-54 354.0 20.9 213 90-327 2-219 (259)
234 TIGR01184 ntrCD nitrate transp 100.0 5.8E-49 1.3E-53 364.6 24.6 200 107-330 1-202 (230)
235 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-49 5.5E-54 363.2 21.8 205 92-325 3-220 (220)
236 TIGR03269 met_CoM_red_A2 methy 100.0 5.8E-49 1.3E-53 404.2 26.9 222 92-331 1-257 (520)
237 TIGR02324 CP_lyasePhnL phospho 100.0 9.7E-49 2.1E-53 360.5 25.3 208 91-316 1-222 (224)
238 PRK13657 cyclic beta-1,2-gluca 100.0 1E-48 2.2E-53 407.8 28.4 275 7-333 273-559 (588)
239 COG4604 CeuD ABC-type enteroch 100.0 2.1E-50 4.6E-55 360.7 13.1 232 91-342 1-233 (252)
240 TIGR02203 MsbA_lipidA lipid A 100.0 7.8E-49 1.7E-53 406.3 26.2 284 5-342 269-565 (571)
241 PRK03695 vitamin B12-transport 100.0 1.1E-48 2.3E-53 366.8 24.7 221 93-332 2-222 (248)
242 cd03254 ABCC_Glucan_exporter_l 100.0 3.8E-49 8.2E-54 364.1 20.8 215 92-331 3-225 (229)
243 PRK09544 znuC high-affinity zi 100.0 1.8E-48 3.9E-53 366.5 25.8 203 90-331 3-208 (251)
244 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-48 3.1E-53 413.9 27.3 285 4-342 392-689 (694)
245 TIGR01842 type_I_sec_PrtD type 100.0 5.2E-48 1.1E-52 399.1 30.7 277 5-331 256-541 (544)
246 cd03253 ABCC_ATM1_transporter 100.0 2.3E-48 5.1E-53 360.4 25.3 217 92-333 1-225 (236)
247 PRK09700 D-allose transporter 100.0 1.4E-48 3.1E-53 400.4 26.0 221 89-329 263-495 (510)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.6E-49 1.6E-53 364.4 21.6 216 92-332 1-226 (238)
249 TIGR02633 xylG D-xylose ABC tr 100.0 1.7E-48 3.6E-53 398.9 25.8 224 89-330 255-490 (500)
250 COG4987 CydC ABC-type transpor 100.0 4.4E-49 9.6E-54 394.0 20.5 223 91-343 336-571 (573)
251 PRK10938 putative molybdenum t 100.0 1.1E-48 2.5E-53 399.2 23.8 214 91-332 3-224 (490)
252 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.3E-48 4.9E-53 359.5 23.5 202 92-325 23-224 (224)
253 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-48 2.9E-53 372.3 22.4 220 92-343 3-235 (275)
254 COG3845 ABC-type uncharacteriz 100.0 3.1E-48 6.8E-53 385.0 25.7 234 90-344 3-239 (501)
255 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-48 5.1E-53 353.4 22.7 198 92-316 1-198 (201)
256 TIGR02204 MsbA_rel ABC transpo 100.0 6E-48 1.3E-52 400.3 27.5 284 7-342 275-572 (576)
257 KOG0055 Multidrug/pheromone ex 100.0 4.3E-49 9.2E-54 424.6 19.4 215 91-334 350-578 (1228)
258 cd03230 ABC_DR_subfamily_A Thi 100.0 6.6E-48 1.4E-52 342.6 23.7 173 92-321 1-173 (173)
259 cd03248 ABCC_TAP TAP, the Tran 100.0 3.2E-48 7E-53 357.5 22.3 210 87-321 7-226 (226)
260 TIGR01192 chvA glucan exporter 100.0 1.1E-47 2.4E-52 400.2 29.1 276 7-334 273-560 (585)
261 cd03229 ABC_Class3 This class 100.0 9.8E-48 2.1E-52 343.0 23.1 177 92-320 1-178 (178)
262 PRK10789 putative multidrug tr 100.0 1.2E-47 2.7E-52 398.5 27.3 274 6-333 253-539 (569)
263 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-47 2.9E-52 343.3 23.1 177 90-321 3-182 (182)
264 cd03244 ABCC_MRP_domain2 Domai 100.0 9.2E-48 2E-52 353.1 22.5 205 92-326 3-220 (221)
265 COG4608 AppF ABC-type oligopep 100.0 5.3E-48 1.1E-52 361.4 21.0 199 90-344 3-212 (268)
266 PRK10762 D-ribose transporter 100.0 1.8E-47 3.9E-52 391.6 26.4 220 89-331 255-483 (501)
267 cd03288 ABCC_SUR2 The SUR doma 100.0 1.3E-47 2.8E-52 361.1 23.2 228 90-343 18-254 (257)
268 PRK13539 cytochrome c biogenes 100.0 2.5E-47 5.3E-52 348.2 23.7 199 91-318 2-200 (207)
269 cd03213 ABCG_EPDR ABCG transpo 100.0 3.2E-47 7E-52 344.5 24.0 183 91-325 3-194 (194)
270 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.5E-47 7.5E-52 346.5 24.1 200 90-326 5-206 (207)
271 KOG0057 Mitochondrial Fe/S clu 100.0 5.9E-48 1.3E-52 386.3 20.7 220 92-342 352-583 (591)
272 COG4172 ABC-type uncharacteriz 100.0 2.4E-47 5.3E-52 370.4 24.3 240 89-344 4-260 (534)
273 TIGR01189 ccmA heme ABC export 100.0 2.9E-47 6.3E-52 345.0 23.3 197 92-315 1-197 (198)
274 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.1E-47 8.8E-52 345.2 24.2 188 92-330 1-191 (200)
275 PRK13540 cytochrome c biogenes 100.0 2.5E-47 5.3E-52 346.2 22.7 197 91-314 1-197 (200)
276 cd03232 ABC_PDR_domain2 The pl 100.0 4.3E-47 9.3E-52 343.0 24.1 182 91-325 3-192 (192)
277 cd03233 ABC_PDR_domain1 The pl 100.0 6.5E-47 1.4E-51 344.6 25.5 192 91-325 3-202 (202)
278 PRK11288 araG L-arabinose tran 100.0 3.1E-47 6.7E-52 389.9 25.3 221 89-331 255-484 (501)
279 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-47 4.6E-52 341.4 20.6 179 93-325 1-180 (180)
280 PRK13546 teichoic acids export 100.0 1.6E-46 3.4E-51 356.0 27.3 221 91-344 4-244 (264)
281 cd03246 ABCC_Protease_Secretio 100.0 4E-47 8.6E-52 337.6 21.6 171 92-321 1-173 (173)
282 TIGR01257 rim_protein retinal- 100.0 7.5E-47 1.6E-51 429.5 29.2 221 89-330 1935-2157(2272)
283 cd03247 ABCC_cytochrome_bd The 100.0 3.9E-47 8.5E-52 338.9 20.7 176 92-325 1-178 (178)
284 TIGR02868 CydC thiol reductant 100.0 4.3E-47 9.3E-52 390.6 23.8 245 9-303 273-529 (529)
285 TIGR01166 cbiO cobalt transpor 100.0 4.6E-47 1E-51 341.3 20.8 186 101-305 2-189 (190)
286 COG4148 ModC ABC-type molybdat 100.0 6.3E-48 1.4E-52 360.0 15.5 213 96-333 5-219 (352)
287 PRK15439 autoinducer 2 ABC tra 100.0 9E-47 2E-51 387.4 25.7 221 88-331 265-491 (510)
288 TIGR01257 rim_protein retinal- 100.0 1.9E-46 4.1E-51 426.2 29.9 221 88-330 925-1147(2272)
289 TIGR02857 CydD thiol reductant 100.0 1.2E-46 2.6E-51 387.3 25.6 255 8-316 262-529 (529)
290 PTZ00265 multidrug resistance 100.0 1.1E-46 2.5E-51 424.3 26.5 224 91-342 1165-1462(1466)
291 PRK10982 galactose/methyl gala 100.0 1.7E-46 3.6E-51 383.5 25.1 222 89-330 248-478 (491)
292 cd03250 ABCC_MRP_domain1 Domai 100.0 1.2E-46 2.6E-51 342.1 20.7 187 92-320 1-204 (204)
293 PRK13545 tagH teichoic acids e 100.0 6.5E-46 1.4E-50 377.4 28.3 211 89-332 19-232 (549)
294 PLN03232 ABC transporter C fam 100.0 2.7E-46 5.8E-51 423.3 28.1 214 91-334 1234-1460(1495)
295 TIGR01187 potA spermidine/putr 100.0 3.8E-46 8.2E-51 363.1 24.4 200 122-343 1-202 (325)
296 PRK15064 ABC transporter ATP-b 100.0 3.1E-46 6.6E-51 385.0 24.8 208 91-331 1-241 (530)
297 PLN03130 ABC transporter C fam 100.0 4.9E-46 1.1E-50 422.5 28.8 213 91-333 1237-1462(1622)
298 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.8E-46 2.1E-50 383.3 28.6 274 5-324 266-551 (555)
299 PRK10938 putative molybdenum t 100.0 2.8E-46 6E-51 381.6 23.9 221 88-325 257-485 (490)
300 PRK11819 putative ABC transpor 100.0 3.3E-46 7.2E-51 387.0 23.9 207 90-330 5-248 (556)
301 PRK10535 macrolide transporter 100.0 2.7E-45 5.9E-50 386.3 30.5 223 90-331 3-231 (648)
302 KOG0055 Multidrug/pheromone ex 100.0 4.7E-46 1E-50 401.1 24.9 255 37-337 950-1218(1228)
303 TIGR00957 MRP_assoc_pro multi 100.0 8E-46 1.7E-50 420.0 27.9 276 16-342 1229-1517(1522)
304 cd03216 ABC_Carb_Monos_I This 100.0 1.9E-45 4E-50 324.5 23.7 162 92-323 1-162 (163)
305 TIGR03771 anch_rpt_ABC anchore 100.0 8E-46 1.7E-50 342.0 22.1 196 112-332 1-201 (223)
306 PLN03211 ABC transporter G-25; 100.0 6.5E-46 1.4E-50 391.1 24.3 215 93-330 70-294 (659)
307 cd03228 ABCC_MRP_Like The MRP 100.0 6.4E-46 1.4E-50 329.3 20.2 169 92-320 1-171 (171)
308 PRK15064 ABC transporter ATP-b 100.0 8E-46 1.7E-50 381.9 23.9 204 89-331 317-524 (530)
309 COG4674 Uncharacterized ABC-ty 100.0 1.5E-46 3.3E-51 335.4 14.8 236 90-346 4-247 (249)
310 cd03290 ABCC_SUR1_N The SUR do 100.0 2.1E-45 4.5E-50 337.3 22.6 201 93-320 2-218 (218)
311 PRK10522 multidrug transporter 100.0 7.4E-45 1.6E-49 376.0 28.7 252 19-327 275-533 (547)
312 PTZ00243 ABC transporter; Prov 100.0 5.2E-45 1.1E-49 413.3 29.2 223 91-342 1308-1543(1560)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-45 5.8E-50 379.8 24.6 208 90-331 3-247 (552)
314 PRK13541 cytochrome c biogenes 100.0 3.3E-45 7.2E-50 331.0 21.9 192 91-313 1-192 (195)
315 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.3E-44 5E-49 344.3 27.4 210 88-342 36-257 (282)
316 COG4619 ABC-type uncharacteriz 100.0 2.6E-46 5.6E-51 327.1 12.0 209 91-321 3-212 (223)
317 PRK11819 putative ABC transpor 100.0 1.8E-44 3.9E-49 374.0 25.8 208 89-332 322-533 (556)
318 PTZ00265 multidrug resistance 100.0 1.5E-44 3.3E-49 407.1 27.1 243 37-319 347-655 (1466)
319 cd03223 ABCD_peroxisomal_ALDP 100.0 1.7E-44 3.7E-49 319.2 21.5 162 92-319 1-163 (166)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-44 4.2E-49 373.4 25.1 207 88-330 319-529 (552)
321 COG4167 SapF ABC-type antimicr 100.0 8.9E-45 1.9E-49 321.5 18.4 238 90-346 3-254 (267)
322 PRK13409 putative ATPase RIL; 100.0 4.4E-44 9.5E-49 373.0 26.0 200 88-327 337-537 (590)
323 PRK10636 putative ABC transpor 100.0 4.1E-44 8.8E-49 376.7 25.4 203 88-330 309-515 (638)
324 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.1E-44 8.8E-49 336.2 21.7 180 105-320 8-193 (246)
325 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-44 5E-49 339.7 19.7 204 95-325 4-220 (255)
326 COG4618 ArpD ABC-type protease 100.0 2.6E-44 5.6E-49 357.4 20.8 264 14-331 283-559 (580)
327 PRK11147 ABC transporter ATPas 100.0 1.2E-43 2.5E-48 373.2 25.5 208 87-330 315-526 (635)
328 TIGR01271 CFTR_protein cystic 100.0 3.1E-43 6.7E-48 398.1 30.0 221 91-343 1217-1450(1490)
329 PRK15177 Vi polysaccharide exp 100.0 3E-43 6.5E-48 323.3 20.8 189 105-330 1-190 (213)
330 COG1119 ModF ABC-type molybden 100.0 2.3E-43 5E-48 325.0 19.4 223 86-325 26-255 (257)
331 PRK10636 putative ABC transpor 100.0 5.4E-43 1.2E-47 368.2 23.4 206 91-330 1-234 (638)
332 TIGR00956 3a01205 Pleiotropic 100.0 1.4E-42 3E-47 390.4 28.2 219 88-329 756-990 (1394)
333 COG4107 PhnK ABC-type phosphon 100.0 2.1E-43 4.6E-48 310.7 16.1 242 89-346 4-256 (258)
334 TIGR00955 3a01204 The Eye Pigm 100.0 6.5E-43 1.4E-47 366.4 22.9 207 102-330 36-254 (617)
335 COG1101 PhnK ABC-type uncharac 100.0 8.4E-43 1.8E-47 315.5 18.7 221 91-329 1-235 (263)
336 PLN03073 ABC transporter F fam 100.0 5.7E-42 1.2E-46 363.7 26.2 202 89-329 506-711 (718)
337 TIGR00954 3a01203 Peroxysomal 100.0 4.9E-42 1.1E-46 362.2 25.4 193 90-317 450-652 (659)
338 PRK11147 ABC transporter ATPas 100.0 4.4E-42 9.6E-47 361.2 24.8 205 91-330 3-241 (635)
339 KOG0056 Heavy metal exporter H 100.0 3.4E-43 7.5E-48 347.2 14.3 214 91-333 537-762 (790)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7.7E-42 1.7E-46 295.9 20.9 144 92-320 1-144 (144)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-41 2.4E-46 305.1 20.4 157 95-331 4-162 (177)
342 PLN03130 ABC transporter C fam 100.0 2.7E-41 6E-46 383.8 27.3 234 36-332 579-828 (1622)
343 PLN03140 ABC transporter G fam 100.0 5.2E-41 1.1E-45 377.6 28.0 216 91-328 867-1106(1470)
344 PLN03232 ABC transporter C fam 100.0 3.4E-41 7.3E-46 381.9 26.3 248 18-332 566-828 (1495)
345 COG0396 sufC Cysteine desulfur 100.0 9.5E-41 2.1E-45 304.9 23.6 222 90-330 2-231 (251)
346 COG4586 ABC-type uncharacteriz 100.0 5.9E-42 1.3E-46 319.2 14.0 206 105-330 38-244 (325)
347 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-40 3.5E-45 376.8 28.7 238 36-332 598-850 (1522)
348 COG1134 TagH ABC-type polysacc 100.0 1.2E-40 2.6E-45 307.1 22.4 196 104-331 40-235 (249)
349 PRK13409 putative ATPase RIL; 100.0 3.8E-41 8.2E-46 351.0 17.3 195 95-319 77-287 (590)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.6E-40 1.4E-44 286.2 21.9 156 94-320 2-157 (157)
351 COG5265 ATM1 ABC-type transpor 100.0 5.6E-41 1.2E-45 327.5 16.3 214 91-333 262-487 (497)
352 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-40 1E-44 370.0 24.0 208 103-330 73-298 (1394)
353 COG4136 ABC-type uncharacteriz 100.0 2.1E-40 4.5E-45 285.6 15.6 202 91-316 2-207 (213)
354 TIGR01271 CFTR_protein cystic 100.0 3.8E-39 8.2E-44 364.9 27.5 197 92-333 429-637 (1490)
355 COG0488 Uup ATPase components 100.0 1.3E-39 2.7E-44 334.0 21.2 207 90-330 2-238 (530)
356 cd03238 ABC_UvrA The excision 100.0 2.5E-39 5.3E-44 289.7 19.9 156 104-321 8-166 (176)
357 PLN03140 ABC transporter G fam 100.0 2E-39 4.2E-44 365.0 20.6 206 103-330 177-425 (1470)
358 KOG0059 Lipid exporter ABCA1 a 100.0 2E-39 4.3E-44 351.6 19.2 223 90-331 563-786 (885)
359 PLN03073 ABC transporter F fam 100.0 3.1E-39 6.7E-44 342.8 18.4 221 89-330 175-429 (718)
360 COG4133 CcmA ABC-type transpor 100.0 5.2E-39 1.1E-43 285.5 15.7 193 91-307 2-194 (209)
361 KOG0061 Transporter, ABC super 100.0 2.8E-38 6.1E-43 330.5 22.4 219 90-330 24-258 (613)
362 KOG0054 Multidrug resistance-a 100.0 1E-38 2.3E-43 350.6 19.9 221 86-338 1135-1368(1381)
363 cd03270 ABC_UvrA_I The excisio 100.0 1.9E-37 4.1E-42 287.3 20.0 199 100-325 4-226 (226)
364 PTZ00243 ABC transporter; Prov 100.0 1.3E-37 2.9E-42 353.0 22.3 194 100-332 669-870 (1560)
365 COG0488 Uup ATPase components 100.0 2.2E-36 4.9E-41 310.1 21.2 202 87-329 317-522 (530)
366 KOG0054 Multidrug resistance-a 100.0 1.6E-35 3.4E-40 325.6 25.2 237 36-332 481-731 (1381)
367 COG4778 PhnL ABC-type phosphon 100.0 2.5E-36 5.3E-41 265.0 14.5 210 90-318 3-227 (235)
368 COG4138 BtuD ABC-type cobalami 100.0 7.9E-37 1.7E-41 269.2 7.8 228 90-342 2-229 (248)
369 cd03271 ABC_UvrA_II The excisi 100.0 1E-34 2.2E-39 274.7 19.5 202 104-327 8-261 (261)
370 PF00005 ABC_tran: ABC transpo 100.0 1.9E-35 4.1E-40 251.0 12.8 133 107-262 1-137 (137)
371 COG1129 MglA ABC-type sugar tr 100.0 7.6E-34 1.7E-38 286.5 22.5 222 87-330 259-488 (500)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 4.1E-34 9E-39 260.0 14.4 168 108-318 14-190 (197)
373 cd03273 ABC_SMC2_euk Eukaryoti 100.0 5.7E-34 1.2E-38 267.5 10.7 205 92-317 6-242 (251)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.6E-33 5.6E-38 260.7 13.2 200 92-317 4-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.2E-32 2.6E-37 252.7 13.9 201 91-320 5-210 (213)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 6.8E-34 1.5E-38 261.5 3.3 190 92-318 6-204 (212)
377 COG3845 ABC-type uncharacteriz 100.0 3.1E-30 6.7E-35 256.8 22.9 229 84-330 250-490 (501)
378 COG4170 SapD ABC-type antimicr 100.0 2.5E-31 5.4E-36 240.5 12.9 239 91-345 3-262 (330)
379 PRK00349 uvrA excinuclease ABC 100.0 2.1E-30 4.7E-35 280.4 19.0 138 182-344 792-939 (943)
380 PRK00635 excinuclease ABC subu 100.0 8.7E-30 1.9E-34 286.6 24.5 222 90-332 599-906 (1809)
381 COG4615 PvdE ABC-type sideroph 100.0 8.7E-31 1.9E-35 254.4 13.5 248 20-325 276-530 (546)
382 cd03240 ABC_Rad50 The catalyti 100.0 1.4E-30 3.1E-35 237.9 13.5 166 110-319 16-198 (204)
383 KOG0927 Predicted transporter 100.0 1E-30 2.3E-35 261.8 10.4 203 88-329 386-593 (614)
384 KOG0065 Pleiotropic drug resis 100.0 9.9E-30 2.1E-34 275.3 16.9 217 91-329 787-1018(1391)
385 COG4178 ABC-type uncharacteriz 100.0 4.6E-29 1E-33 256.4 17.6 190 89-316 390-586 (604)
386 COG1245 Predicted ATPase, RNas 100.0 1.3E-28 2.8E-33 242.8 16.9 191 89-317 340-530 (591)
387 KOG0927 Predicted transporter 100.0 2.3E-28 4.9E-33 245.1 14.6 212 92-331 76-308 (614)
388 cd03276 ABC_SMC6_euk Eukaryoti 100.0 4.9E-28 1.1E-32 220.3 15.2 180 106-320 11-192 (198)
389 TIGR00630 uvra excinuclease AB 100.0 2.5E-27 5.5E-32 256.2 21.3 127 182-330 790-923 (924)
390 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.9E-28 4.1E-33 229.8 10.3 202 92-318 4-233 (247)
391 KOG0062 ATPase component of AB 99.9 6.1E-27 1.3E-31 233.7 15.0 198 88-323 359-559 (582)
392 KOG0062 ATPase component of AB 99.9 4E-27 8.8E-32 235.0 10.4 200 92-330 81-283 (582)
393 KOG0060 Long-chain acyl-CoA tr 99.9 4.6E-26 9.9E-31 230.0 17.4 199 88-318 430-641 (659)
394 KOG0066 eIF2-interacting prote 99.9 2.7E-26 5.9E-31 225.4 13.9 197 84-321 579-779 (807)
395 KOG2355 Predicted ABC-type tra 99.9 7.1E-24 1.5E-28 191.5 15.7 210 88-325 10-230 (291)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.2E-24 2.6E-29 197.8 10.6 147 106-325 16-172 (200)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 7.9E-24 1.7E-28 194.8 13.4 189 107-320 14-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 3.3E-24 7.2E-29 211.7 8.7 194 96-318 79-288 (591)
399 cd03283 ABC_MutS-like MutS-lik 99.9 8.5E-23 1.8E-27 186.1 10.5 147 104-316 14-163 (199)
400 KOG0065 Pleiotropic drug resis 99.9 1.3E-22 2.9E-27 220.4 13.2 206 104-330 128-349 (1391)
401 cd03239 ABC_SMC_head The struc 99.9 5.8E-22 1.3E-26 177.7 14.9 78 227-318 95-172 (178)
402 cd03241 ABC_RecN RecN ATPase i 99.9 2E-21 4.3E-26 185.2 17.5 81 226-321 170-250 (276)
403 KOG0064 Peroxisomal long-chain 99.9 1E-22 2.2E-27 203.9 7.9 186 92-316 482-681 (728)
404 COG2401 ABC-type ATPase fused 99.9 1.4E-21 2.9E-26 191.6 13.4 181 104-322 396-588 (593)
405 PRK00635 excinuclease ABC subu 99.9 1E-20 2.2E-25 214.0 20.4 122 207-343 1679-1807(1809)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.9 1.2E-21 2.5E-26 181.6 9.9 153 103-326 16-175 (222)
407 cd03227 ABC_Class2 ABC-type Cl 99.9 4.3E-21 9.2E-26 169.0 13.0 143 108-318 12-155 (162)
408 PRK00349 uvrA excinuclease ABC 99.8 6.3E-21 1.4E-25 207.1 15.0 135 179-332 434-585 (943)
409 COG0178 UvrA Excinuclease ATPa 99.8 9.3E-20 2E-24 190.3 20.2 122 208-344 803-931 (935)
410 TIGR00630 uvra excinuclease AB 99.8 1.2E-20 2.7E-25 204.5 14.0 135 181-332 434-583 (924)
411 KOG0066 eIF2-interacting prote 99.8 7.4E-22 1.6E-26 194.3 3.6 213 91-323 264-489 (807)
412 cd03243 ABC_MutS_homologs The 99.8 8.7E-21 1.9E-25 172.6 7.3 155 108-329 20-176 (202)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.8 9.1E-20 2E-24 166.9 11.0 143 103-311 15-159 (204)
414 cd03242 ABC_RecF RecF is a rec 99.8 3.7E-19 8.1E-24 169.1 14.3 84 224-321 181-269 (270)
415 KOG0063 RNAse L inhibitor, ABC 99.8 8.1E-19 1.8E-23 172.6 13.3 184 99-318 343-532 (592)
416 cd03284 ABC_MutS1 MutS1 homolo 99.8 1.5E-18 3.3E-23 160.1 11.9 159 103-330 17-179 (216)
417 TIGR02858 spore_III_AA stage I 99.8 2.2E-18 4.8E-23 164.1 11.9 144 118-331 112-268 (270)
418 smart00534 MUTSac ATPase domai 99.7 2.8E-17 6E-22 147.9 6.6 89 214-321 49-139 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.7 9.5E-16 2.1E-20 141.2 13.4 141 105-310 17-161 (213)
420 PRK00064 recF recombination pr 99.6 7.9E-15 1.7E-19 145.2 18.6 84 225-321 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.2E-16 2.5E-21 146.6 4.7 181 108-316 16-211 (220)
422 TIGR01069 mutS2 MutS2 family p 99.6 4.1E-16 8.9E-21 167.3 7.6 152 91-307 295-449 (771)
423 cd00820 PEPCK_HprK Phosphoenol 99.6 1.5E-15 3.2E-20 125.3 6.2 78 104-192 2-79 (107)
424 PRK07721 fliI flagellum-specif 99.6 4.7E-14 1E-18 142.6 15.4 185 103-329 145-340 (438)
425 PTZ00132 GTP-binding nuclear p 99.6 5.7E-15 1.2E-19 135.0 7.5 149 119-281 11-205 (215)
426 KOG0063 RNAse L inhibitor, ABC 99.5 3.4E-15 7.4E-20 147.3 5.4 176 115-318 98-288 (592)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.5 9.6E-14 2.1E-18 128.8 12.9 139 104-308 18-159 (222)
428 cd01128 rho_factor Transcripti 99.5 6E-14 1.3E-18 132.3 9.7 180 110-322 9-212 (249)
429 TIGR00618 sbcc exonuclease Sbc 99.5 9.6E-14 2.1E-18 154.1 11.5 94 216-319 940-1036(1042)
430 COG0178 UvrA Excinuclease ATPa 99.5 5.8E-13 1.3E-17 140.0 16.2 124 211-350 465-595 (935)
431 PRK00409 recombination and DNA 99.5 2.6E-13 5.7E-18 146.1 12.2 149 108-323 319-469 (782)
432 TIGR00634 recN DNA repair prot 99.5 1.5E-13 3.3E-18 143.4 9.8 81 225-320 439-519 (563)
433 PHA02562 46 endonuclease subun 99.5 1.6E-13 3.4E-18 142.4 9.1 86 223-321 465-555 (562)
434 PRK08533 flagellar accessory p 99.4 8.3E-13 1.8E-17 123.1 12.6 164 92-317 8-184 (230)
435 PRK10869 recombination and rep 99.4 9.8E-13 2.1E-17 137.0 10.6 80 226-320 430-509 (553)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.4 4.6E-12 1E-16 117.3 13.8 142 103-310 16-160 (218)
437 cd01124 KaiC KaiC is a circadi 99.4 2.7E-12 5.9E-17 114.0 11.1 90 212-317 57-163 (187)
438 PRK13695 putative NTPase; Prov 99.4 2.1E-13 4.6E-18 121.0 3.4 82 222-325 74-157 (174)
439 PF13304 AAA_21: AAA domain; P 99.4 2.4E-12 5.2E-17 115.5 10.1 68 224-306 234-302 (303)
440 PRK03918 chromosome segregatio 99.4 2.1E-12 4.5E-17 140.8 10.2 80 221-318 783-868 (880)
441 COG3910 Predicted ATPase [Gene 99.4 5.4E-12 1.2E-16 113.2 11.0 85 219-321 122-206 (233)
442 PRK13830 conjugal transfer pro 99.3 1.5E-11 3.2E-16 133.5 15.8 98 219-326 605-727 (818)
443 PRK06793 fliI flagellum-specif 99.3 4.3E-12 9.4E-17 127.8 10.8 175 91-327 130-306 (432)
444 PRK10246 exonuclease subunit S 99.3 5.5E-12 1.2E-16 140.1 11.2 89 220-318 943-1032(1047)
445 PRK01156 chromosome segregatio 99.3 1.3E-11 2.8E-16 135.2 13.9 80 222-317 797-883 (895)
446 TIGR00606 rad50 rad50. This fa 99.3 1.1E-11 2.4E-16 140.6 11.6 72 222-310 1195-1277(1311)
447 TIGR02788 VirB11 P-type DNA tr 99.3 8.3E-12 1.8E-16 121.1 7.3 143 110-331 137-280 (308)
448 TIGR03238 dnd_assoc_3 dnd syst 99.3 2E-12 4.3E-17 130.7 3.0 67 105-176 20-87 (504)
449 TIGR02168 SMC_prok_B chromosom 99.3 7.8E-12 1.7E-16 138.8 8.0 84 219-317 1082-1165(1179)
450 cd01120 RecA-like_NTPases RecA 99.2 2.5E-11 5.4E-16 103.8 8.5 131 119-307 1-141 (165)
451 TIGR02169 SMC_prok_A chromosom 99.2 5.8E-11 1.3E-15 132.2 8.7 83 221-318 1069-1151(1164)
452 PRK02224 chromosome segregatio 99.1 1.8E-10 3.8E-15 126.0 9.6 85 223-319 778-869 (880)
453 PRK06067 flagellar accessory p 99.1 1.5E-09 3.3E-14 100.7 11.8 79 225-318 99-187 (234)
454 PRK06995 flhF flagellar biosyn 99.0 5.1E-10 1.1E-14 114.4 8.7 144 106-282 245-391 (484)
455 TIGR02655 circ_KaiC circadian 99.0 2E-11 4.3E-16 125.4 -4.6 159 113-317 17-190 (484)
456 cd01130 VirB11-like_ATPase Typ 99.0 8.6E-10 1.9E-14 99.2 6.5 82 107-193 15-98 (186)
457 PRK06002 fliI flagellum-specif 99.0 1.2E-09 2.7E-14 110.5 8.0 86 90-176 138-229 (450)
458 TIGR01026 fliI_yscN ATPase Fli 98.9 5.4E-09 1.2E-13 106.1 11.9 189 103-329 150-345 (440)
459 smart00382 AAA ATPases associa 98.9 6.2E-08 1.4E-12 79.2 16.1 100 116-274 1-101 (148)
460 PRK07196 fliI flagellum-specif 98.9 1.5E-09 3.2E-14 109.7 6.7 89 103-192 142-237 (434)
461 PRK06315 type III secretion sy 98.9 1.9E-09 4E-14 109.2 7.0 175 104-327 152-345 (442)
462 PRK13891 conjugal transfer pro 98.9 2.6E-08 5.7E-13 108.9 16.4 55 237-308 680-735 (852)
463 cd01131 PilT Pilus retraction 98.9 6.1E-09 1.3E-13 94.8 9.7 34 119-152 3-37 (198)
464 TIGR03881 KaiC_arch_4 KaiC dom 98.9 6.2E-10 1.3E-14 102.7 1.7 41 113-153 16-57 (229)
465 cd01125 repA Hexameric Replica 98.9 9.7E-09 2.1E-13 95.8 9.2 136 117-304 1-160 (239)
466 cd02023 UMPK Uridine monophosp 98.8 2.7E-09 6E-14 96.4 4.6 114 119-267 1-114 (198)
467 PRK13898 type IV secretion sys 98.8 6.8E-08 1.5E-12 105.0 16.1 49 250-308 641-690 (800)
468 TIGR00611 recf recF protein. A 98.8 1.3E-08 2.9E-13 101.1 7.8 70 225-307 274-345 (365)
469 PRK09825 idnK D-gluconate kina 98.8 4.8E-09 1E-13 93.9 3.7 70 116-192 2-71 (176)
470 COG0419 SbcC ATPase involved i 98.7 2.4E-08 5.3E-13 109.9 9.1 86 222-319 811-898 (908)
471 PRK14079 recF recombination pr 98.7 3.3E-08 7.2E-13 97.7 7.1 84 225-325 262-347 (349)
472 PLN03210 Resistant to P. syrin 98.7 8.2E-08 1.8E-12 108.2 10.6 43 110-152 200-243 (1153)
473 PRK05399 DNA mismatch repair p 98.7 1.9E-07 4.1E-12 102.1 12.7 140 104-312 595-738 (854)
474 TIGR02680 conserved hypothetic 98.6 6E-08 1.3E-12 110.5 7.6 71 220-303 1241-1316(1353)
475 PRK08149 ATP synthase SpaL; Va 98.6 6E-08 1.3E-12 97.9 6.5 75 102-177 137-216 (428)
476 TIGR00235 udk uridine kinase. 98.6 1.4E-08 3E-13 92.7 1.3 29 115-143 4-32 (207)
477 cd01876 YihA_EngB The YihA (En 98.6 2.1E-07 4.5E-12 79.3 7.8 146 120-279 2-169 (170)
478 PRK09862 putative ATP-dependen 98.5 5.7E-08 1.2E-12 100.1 4.4 63 94-156 187-249 (506)
479 PRK13873 conjugal transfer ATP 98.5 9.1E-07 2E-11 96.4 13.9 48 250-307 634-682 (811)
480 PRK01889 GTPase RsgA; Reviewed 98.5 1.8E-07 3.9E-12 92.7 7.5 78 107-190 185-262 (356)
481 PRK00454 engB GTP-binding prot 98.5 2.1E-07 4.5E-12 82.9 7.0 67 206-282 126-195 (196)
482 PRK07594 type III secretion sy 98.5 9.4E-08 2E-12 96.7 4.9 63 91-154 129-192 (433)
483 TIGR02322 phosphon_PhnN phosph 98.5 2.9E-07 6.2E-12 81.6 7.3 66 117-184 1-81 (179)
484 PRK10078 ribose 1,5-bisphospho 98.5 1.6E-07 3.4E-12 84.3 5.6 55 117-176 2-56 (186)
485 TIGR02546 III_secr_ATP type II 98.5 1.6E-07 3.4E-12 95.1 5.9 86 103-190 132-221 (422)
486 PRK10416 signal recognition pa 98.5 9.6E-08 2.1E-12 93.3 4.0 76 115-190 112-191 (318)
487 TIGR02903 spore_lon_C ATP-depe 98.5 5.1E-07 1.1E-11 95.5 9.5 110 116-278 174-291 (615)
488 PRK00300 gmk guanylate kinase; 98.5 1.4E-07 3E-12 85.4 4.2 39 115-155 3-53 (205)
489 TIGR01420 pilT_fam pilus retra 98.5 6.4E-07 1.4E-11 88.3 9.1 39 114-152 119-158 (343)
490 cd01136 ATPase_flagellum-secre 98.4 2.6E-07 5.6E-12 90.5 6.1 56 98-154 50-106 (326)
491 PRK07960 fliI flagellum-specif 98.4 1.8E-07 3.9E-12 94.8 4.5 73 104-177 163-239 (455)
492 TIGR00554 panK_bact pantothena 98.4 2.7E-07 5.8E-12 89.0 4.4 70 118-191 63-134 (290)
493 TIGR00416 sms DNA repair prote 98.4 6.5E-07 1.4E-11 91.5 7.4 42 113-154 90-132 (454)
494 PRK09099 type III secretion sy 98.4 4.6E-07 9.9E-12 92.0 5.7 51 103-154 150-200 (441)
495 TIGR00767 rho transcription te 98.3 6.8E-07 1.5E-11 89.5 6.3 53 91-143 130-194 (415)
496 PF13555 AAA_29: P-loop contai 98.3 2.7E-07 5.9E-12 68.8 2.5 39 107-145 12-51 (62)
497 PRK09270 nucleoside triphospha 98.3 6.5E-07 1.4E-11 83.1 5.2 69 115-190 31-103 (229)
498 TIGR03498 FliI_clade3 flagella 98.3 7.6E-07 1.7E-11 89.9 5.9 61 94-155 117-178 (418)
499 TIGR03497 FliI_clade2 flagella 98.3 9.2E-07 2E-11 89.3 6.3 57 98-155 118-175 (413)
500 PF13558 SbcCD_C: Putative exo 98.3 1.3E-06 2.9E-11 69.8 5.7 59 220-278 26-90 (90)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-69 Score=488.66 Aligned_cols=237 Identities=38% Similarity=0.644 Sum_probs=218.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+||+.++|+||||+|.+||+++||||||||||||||||+||.+|++|+|+++|+++.... .....|+++
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999998764322 222234579
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+|||+++|||++||.||+.++...-.+.++++.++++.++|+++||.+..+.+|.+|||||||||||||||+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa------- 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA------- 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-------
Confidence 9999999999999999999998766667888999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
++|+++|+|||||+|||+...++++.+++|+++| .|+|+|||++.++.++||||++|++|+|+++|++++
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG----------mTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC----------CeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHH
Confidence 5799999999999999999999999999999998 699999999999999999999999999999999998
Q ss_pred cc-cCCcHHHHHHhcC
Q 018638 330 FT-SSSNPIVQQFASG 344 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~~ 344 (352)
++ .+.++.+++|+..
T Consensus 223 ~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 223 FFDNPKSERTRQFLSK 238 (240)
T ss_pred HhcCCCCHHHHHHHHh
Confidence 76 5678999999863
No 2
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-66 Score=475.52 Aligned_cols=248 Identities=46% Similarity=0.766 Sum_probs=232.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hccc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~~~ 167 (352)
.+.|++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++........ ..++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999999999999999877654333 2345
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|++||+.+||.++||+||++|++..+...+++.+++.+..-|+.+||... .+++|++|||||++|++|||||+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial--- 162 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL--- 162 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc---
Confidence 7999999999999999999999999998889999999999999999999876 999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|+||++||||+||||.+...+-++|++|++.-+ .|+|+||||++.+..+||||++|.+|+|++.|+
T Consensus 163 ----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg---------~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 163 ----DPELLFLDEPTSGLDPISAGVIDELIRELNDALG---------LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred ----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC---------CEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 6999999999999999999999999999988732 699999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHhcCCCCCCCCC
Q 018638 327 THEFTSSSNPIVQQFASGSLEGPIRY 352 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (352)
++++....+|++++|+.|.+++||++
T Consensus 230 ~~el~~sd~P~v~qf~~G~~~gpi~~ 255 (263)
T COG1127 230 PEELLASDDPWVRQFFNGIRDGPIPF 255 (263)
T ss_pred HHHHHhCCCHHHHHHhcCCCCCceec
Confidence 99999889999999999999999863
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-64 Score=475.13 Aligned_cols=239 Identities=37% Similarity=0.592 Sum_probs=219.2
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-h
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~ 164 (352)
||++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|||++|.+|++|+|.++|+++..+..... .
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999975 469999999999999999999999999999999999999999999999999877644332 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.|++||||||+++|+...||++|++|++... +.+++++++++.++|+.+||+++.+++|.+|||||||||+|||||+.
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~- 158 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELA-GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN- 158 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc-
Confidence 3457999999999999999999999999644 47889999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|||+|||||+|||++.+.++++|++++++-+ .||++|||.|+.++++||||+||++|+|+++
T Consensus 159 ------~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg---------lTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 159 ------NPKILLCDEATSALDPETTQSILELLKDINRELG---------LTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred ------CCCEEEecCccccCChHHHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 6999999999999999999999999999987731 6999999999999999999999999999999
Q ss_pred ecccccc-cCCcHHHHHHhcCCC
Q 018638 325 GMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 325 g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
|+..+++ .+.++.+++|+....
T Consensus 224 G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 224 GTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred ccHHHhhcCcchHHHHHHHHhhc
Confidence 9999966 577899999998654
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-63 Score=458.65 Aligned_cols=236 Identities=36% Similarity=0.561 Sum_probs=216.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||||.|+++.+++|+||+|++||++++||||||||||+||+|++|++|++|+|+|+|+++...... .+ |++||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~-~L-Rr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV-EL-RRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHH-HH-HHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999998765332 33 44799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||-|...|||++||.|||++.... .+++++++++++.|+|+.+||+ ++.+|+|++|||||||||.+||||+.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L-~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa----- 152 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKL-LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA----- 152 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc-----
Confidence 999999999999999999987643 4467889999999999999997 49999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+|||+||||++|||.++..+++.+.+++++-+ +|||+||||++++.+++|||++|++|+|++.++|+
T Consensus 153 --dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~---------kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 153 --DPPILLMDEPFGALDPITRKQLQEEIKELQKELG---------KTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred --CCCeEeecCCccccChhhHHHHHHHHHHHHHHhC---------CEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHH
Confidence 6999999999999999999999999999988732 69999999999999999999999999999999999
Q ss_pred ccc-cCCcHHHHHHhcCC
Q 018638 329 EFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 329 ~~~-~~~~~~~~~~~~~~ 345 (352)
++. .+.++.+++|+..+
T Consensus 222 ~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 222 EILANPANDFVEDFFGES 239 (309)
T ss_pred HHHhCccHHHHHHHhccc
Confidence 976 57789999998765
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-63 Score=480.18 Aligned_cols=234 Identities=37% Similarity=0.616 Sum_probs=215.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+.|+++||+|+||+..+|+||||+|++||+++|+||||||||||||+|+||..|++|+|.++|+++..+... ++.|
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~----kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE----KRPI 79 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh----hccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999875332 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+|||++.|||+|||+|||+|++.......++++.+++.++|+.++|+++.+|+|++|||||||||||||||+.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~------ 153 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP------ 153 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc------
Confidence 99999999999999999999999744445567788999999999999999999999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++||||||+|+||...+.++...++++.++-+ +|.|+||||.+++..++|||+||++|+|.+.|+|++
T Consensus 154 -~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g---------iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 154 -EPKVLLLDEPLSALDAKLREQMRKELKELQRELG---------ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred -CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC---------CeEEEEECCHHHHhhhccceEEccCCceeecCCHHH
Confidence 7999999999999999999999999999987621 699999999999999999999999999999999999
Q ss_pred cc-cCCcHHHHHHhc
Q 018638 330 FT-SSSNPIVQQFAS 343 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~ 343 (352)
++ .+.+..+.+|+.
T Consensus 224 iY~~P~~~fVA~FiG 238 (352)
T COG3842 224 IYERPATRFVADFIG 238 (352)
T ss_pred HhhCcchHHHHHHhC
Confidence 76 456788888886
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-61 Score=465.22 Aligned_cols=233 Identities=36% Similarity=0.580 Sum_probs=215.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+||+..+|+++||+|+.||+++|+||||||||||||+||||++|++|+|+|+|++++.+. +. +++|+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-P~---~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PE---KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hh---HCCEE
Confidence 599999999999866999999999999999999999999999999999999999999999999988753 22 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.|||+|||+|||+|++.. .+.+++++++++.++++.++|+++++|+|.+|||||||||||||||++
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~-~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr------- 150 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKL-RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR------- 150 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhh-CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc-------
Confidence 999999999999999999999854 446788999999999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+++|||||+|+||...+..+...|++++++-+ .|+|+||||..+++.++|||++|++|+|.+.|+|.++
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~---------~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG---------TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC---------CcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 6999999999999999999999999999988732 6999999999999999999999999999999999997
Q ss_pred c-cCCcHHHHHHhcC
Q 018638 331 T-SSSNPIVQQFASG 344 (352)
Q Consensus 331 ~-~~~~~~~~~~~~~ 344 (352)
+ .+.+..+..|+..
T Consensus 222 y~~P~n~fVA~FiG~ 236 (338)
T COG3839 222 YERPANLFVAGFIGS 236 (338)
T ss_pred hhCccchhhhhhcCC
Confidence 6 5667888888753
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-59 Score=435.45 Aligned_cols=211 Identities=39% Similarity=0.627 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.++++++|+++|++..+|+||||+|.+||+++||||||||||||||+|+||.+|++|+|.++|+++.. + ...+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~---p----~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG---P----GPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC---C----CCCE
Confidence 36899999999999999999999999999999999999999999999999999999999999987632 1 2259
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+||||++.|||.+||+||+.|++.... .++++..+++.++|+.+||.++.+++|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~------ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT------ 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc------
Confidence 999999999999999999999985433 4556666789999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|+||||||||++||..++..+++.+.++.++.+ .|||+||||++++..++|||++|.+ |+|...
T Consensus 148 -~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~---------~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~ 214 (248)
T COG1116 148 -RPKLLLLDEPFGALDALTREELQDELLRLWEETR---------KTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214 (248)
T ss_pred -CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence 6999999999999999999999999999976632 6999999999999999999999999 555443
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-59 Score=438.03 Aligned_cols=231 Identities=38% Similarity=0.564 Sum_probs=204.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++..+. .++.+ ++++
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~-~kelA-k~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS-PKELA-KKLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC-HHHHh-hhEE
Confidence 689999999999999999999999999999999999999999999999999999999999999987753 33333 3699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCC---CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||.+...+.+||+|-+.++.+.+.+. ..++-.+.+.++|+.+|+.++.+|...+|||||||||.|||||++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ---- 155 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ---- 155 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc----
Confidence 9999987666799999999987654321 123334578999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||...+.++++++++++++ | .|||+|+||++.+.++||++++|++|++++.|+
T Consensus 156 ---~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~----------~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 156 ---ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG----------LTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred ---CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCeEEeecC
Confidence 69999999999999999999999999999865 5 699999999999999999999999999999999
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
|+++.++ +.+++.|
T Consensus 223 p~evlT~--e~l~~Vy 236 (258)
T COG1120 223 PEEVLTE--ENLREVY 236 (258)
T ss_pred cchhcCH--HHHHHHh
Confidence 9988753 3344444
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-59 Score=444.27 Aligned_cols=236 Identities=38% Similarity=0.614 Sum_probs=209.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++|++|.|+...+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+.+.+... ...+.++|
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~V 79 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKV 79 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhhcce
Confidence 36899999999999999999999999999999999999999999999999999999999999993322211 12233479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||||++.||++|||.+||+|++.... ..++.+++.++.++|+.+.|+++.+++|.+|||||||||||||||+-
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~----- 154 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV----- 154 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc-----
Confidence 999999999999999999999985442 24466788899999999999999999999999999999999999985
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++||||||+++||...+.++...|++++++ | .|+|+||||.+++.++||||++|++|+|...|++
T Consensus 155 --eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~----------~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 155 --EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG----------VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred --CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC----------ceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 79999999999999999999999999999877 5 6999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
.|++. +..+.+..|+.
T Consensus 223 ~ev~~~P~s~fV~~f~G 239 (345)
T COG1118 223 DEVYDHPASRFVARFLG 239 (345)
T ss_pred HHHhcCCCccceecccc
Confidence 99764 44566655553
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-59 Score=421.21 Aligned_cols=238 Identities=32% Similarity=0.512 Sum_probs=212.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-----eEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-----GEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-----G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++++||++.||++.+|+|||++|++++++|||||||||||||||+++.+.+... |+|.++|+++.....+..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 356999999999999999999999999999999999999999999999999988764 999999999875422222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..|++||+|||.|+.|| +|++|||+|+...+...+ ++.++.|+..|+.+.|. +.+++.+..||||||||++|||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 23457999999999999 899999999987665444 78889999999999984 4677788999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+ .+|+|||||||||+|||.+...+.++|.+|+++ .|||+|||+|..+.+++|+++++..|
T Consensus 163 alA-------v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-----------yTIviVTHnmqQAaRvSD~taFf~~G 224 (253)
T COG1117 163 ALA-------VKPEVLLMDEPTSALDPISTLKIEELITELKKK-----------YTIVIVTHNMQQAARVSDYTAFFYLG 224 (253)
T ss_pred HHh-------cCCcEEEecCcccccCchhHHHHHHHHHHHHhc-----------cEEEEEeCCHHHHHHHhHhhhhhccc
Confidence 997 479999999999999999999999999999876 59999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
++++.|++++++ .+.+..+++++.|..
T Consensus 225 ~LvE~g~T~~iF~~P~~~~TedYisGrf 252 (253)
T COG1117 225 ELVEFGPTDKIFTNPKHKRTEDYISGRF 252 (253)
T ss_pred EEEEEcCHHhhhcCccHHHHHHHhccCC
Confidence 999999999976 567888999998754
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.6e-58 Score=422.56 Aligned_cols=213 Identities=39% Similarity=0.615 Sum_probs=188.4
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~ 164 (352)
+++++||+|.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+.+|++|+|+|+|+++..+.... ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4789999999963 37999999999999999999999999999999999999999999999999987764332 23
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-cCCCCCChHHHHHHHHHHHHhc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++.+||||||+++|+|.+||.|||.+++... +.......+++.++++.+||.+..+ ++|.+|||||||||||||||++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~-~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIA-GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHc-CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 4557999999999999999999999987443 3333355677889999999987666 8999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++||+||||++||..+.+.++++|++++++ | +||||||||...+. +|||++.|++|++.
T Consensus 160 -------~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g----------~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 160 -------NPKIILADEPTGNLDSKTAKEVLELLRELNKERG----------KTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred -------CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 69999999999999999999999999999876 5 69999999999876 68999999999953
No 12
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-58 Score=423.77 Aligned_cols=236 Identities=32% Similarity=0.514 Sum_probs=208.2
Q ss_pred ceEEEEeEEEEeCCee----eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 90 VLIDCRNVYKSFGEKH----ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~----~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
++|+++||++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+|+|++........ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK-AF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch-hh
Confidence 5799999999999877 999999999999999999999999999999999999999999999998765432222 22
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHh
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
.+.|.+||||| .+.|..||++-|..++..+ +.++ .++++.++|+.+||. .+++|+|++|||||||||||||||+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccC-CccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 33699999998 5899999999998887542 2333 344589999999995 6999999999999999999999998
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++||||||||+||+..+.+++++|.+++++.. .|+||||||+..+..+||||+||++|+++
T Consensus 158 ~-------~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~---------lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 158 P-------EPKLLILDEPTSALDVSVQAQILNLLLELKKERG---------LTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred c-------CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC---------ceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 5 7999999999999999999999999999988742 69999999999999999999999999999
Q ss_pred Eeeccccccc-CCcHHHHHHhcCC
Q 018638 323 WQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 323 ~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
+.+++.++.. +.+++++.++...
T Consensus 222 E~~~~~~l~~~~~h~ytr~Ll~a~ 245 (252)
T COG1124 222 EIGPTEELLSHPSHPYTRELLEAV 245 (252)
T ss_pred EeechhhhhcCCccHHHHHHHHhh
Confidence 9999999764 5789999998753
No 13
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.1e-57 Score=442.21 Aligned_cols=236 Identities=34% Similarity=0.563 Sum_probs=208.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hc
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~ 165 (352)
||+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 479999999999999999999999999999999999999999999999999865422211 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+++|||+||++.+|+.+||+||+.+++... +.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~-- 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh--
Confidence 346999999999999999999999976432 34556677788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..++++|++++++ | .|||+|||+++.+.++||||++|++|+|++.
T Consensus 158 -----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g----------~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 158 -----NPKVLLCDEATSALDPATTQSILELLKEINRRLG----------LTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999875 5 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhcC
Q 018638 325 GMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++++. +.++.++.|+..
T Consensus 223 g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 223 GTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred cCHHHHHcCCCcHHHHHHHhh
Confidence 99988754 556777777753
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.3e-58 Score=406.81 Aligned_cols=217 Identities=39% Similarity=0.566 Sum_probs=200.4
Q ss_pred eEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+|.|++ +.+|+||||+|++||++.|+||||||||||||+|++..+|++|+|+++|.++..+...+ ...+++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999964 55999999999999999999999999999999999999999999999999987654332 223557
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||||..|.+++||+||++|++.. .+.+++++++++.++|+.+||.+..+..|.+|||||||||+||||+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v-~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~----- 154 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRV-IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN----- 154 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhc-cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc-----
Confidence 99999999999999999999999854 346788999999999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++||.||||.+|||....++++++.++++.| +||||+|||.+.+.++--|++.|++|+++.+.
T Consensus 155 --~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G----------tTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 155 --QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG----------TTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred --CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC----------cEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 699999999999999999999999999999988 69999999999999999999999999998765
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-57 Score=424.54 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.++|++.... ..+.+|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~-----~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR-----RKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc-----ccCCeE
Confidence 579999999999976899999999999999999999999999999999999999999999999875321 123479
Q ss_pred EEEecCCC---CCCCCCHHHHHHhhhhhcCCC---CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAA---LFDSLTVRENVGFLLYENSKM---RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~---l~~~lTV~eni~~~~~~~~~~---~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|||||... -|| +||+|.+.++.+...+. ..++-.+++.++|+++|+.++.++.+.+|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 99999653 376 79999999986543321 122236789999999999999999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|+|+.++..++++|++|+++| +||+|||||++.+..++|+|+.|++ ++..
T Consensus 157 -------~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg----------~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~ 218 (254)
T COG1121 157 -------NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG----------KTVLMVTHDLGLVMAYFDRVICLNR-HLIA 218 (254)
T ss_pred -------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCcHHhHhhCCEEEEEcC-eeEe
Confidence 699999999999999999999999999999887 6999999999999999999999965 7889
Q ss_pred eecccccccC
Q 018638 324 QGMTHEFTSS 333 (352)
Q Consensus 324 ~g~~~~~~~~ 333 (352)
.|+++++.+.
T Consensus 219 ~G~~~~~~~~ 228 (254)
T COG1121 219 SGPPEEVLTE 228 (254)
T ss_pred ccChhhccCH
Confidence 9999998653
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-58 Score=417.83 Aligned_cols=226 Identities=34% Similarity=0.556 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hccc
Q 018638 90 VLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-ISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~~~ 167 (352)
++|+++||++.| +++.+|+||||+|++||+++||||||||||||||+|+|+++|++|+|.++|.++..+..... ..+.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999 78899999999999999999999999999999999999999999999999998876543321 1234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+|||+||+++|.+.+||.+|+..+...+. +...++.+..+.++|+++|+.+++.++.++|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 69999999999999999999988753221 22334445667889999999999999999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|++ +|++||.|||+++|||.+.+.+++.|++++++.+ .|+|+..|+++.+.+|||||+-|++|+
T Consensus 162 L~Q-------~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g---------~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 162 LVQ-------QPKIILADEPVASLDPESAKKVMDILKDINQEDG---------ITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred Hhc-------CCCEEecCCcccccChhhHHHHHHHHHHHHHHcC---------CEEEEEechHHHHHHHHhhheEecCCc
Confidence 997 6999999999999999999999999999987631 699999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
|+++|++.++.
T Consensus 226 ivfDg~~~el~ 236 (258)
T COG3638 226 IVFDGPASELT 236 (258)
T ss_pred EEEeCChhhhh
Confidence 99999988853
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-56 Score=442.05 Aligned_cols=231 Identities=33% Similarity=0.543 Sum_probs=207.4
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~---~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PA---DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 59999999999 7788999999999999999999999999999999999999999999999999986532 22 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+|||.|++... +.+..+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~------ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR------ 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 24555667788999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|+++
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 152 -EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK----------TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHH
Confidence 69999999999999999999999999999875 5 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+..|+.
T Consensus 221 ~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 221 EVYEKPASTFVASFIG 236 (356)
T ss_pred HHHhCCccHHHHHHcC
Confidence 8764 44566666654
No 18
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-56 Score=415.43 Aligned_cols=231 Identities=55% Similarity=0.889 Sum_probs=200.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ig 170 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 57899999999888999999999999999999999999999999999999999999999999875432110 11234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||+||+.++.........++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~------- 153 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL------- 153 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998865322223445556778899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++|++++.|++++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG----------LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998888
Q ss_pred cccCCcHHHH
Q 018638 330 FTSSSNPIVQ 339 (352)
Q Consensus 330 ~~~~~~~~~~ 339 (352)
+....+++++
T Consensus 224 ~~~~~~~~~~ 233 (235)
T cd03261 224 LRASDDPLVR 233 (235)
T ss_pred HcCCCChhhh
Confidence 7655555544
No 19
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-56 Score=439.36 Aligned_cols=232 Identities=34% Similarity=0.581 Sum_probs=209.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++|
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~---~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-I---QQRDI 80 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-H---HHCCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999886432 2 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+||+.|++..+ +.++.+..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~------ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL------ 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999987432 34566677889999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|+++
T Consensus 154 -~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~ 222 (351)
T PRK11432 154 -KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN----------ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222 (351)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 69999999999999999999999999999875 4 59999999999999999999999999999999998
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+.+|+.
T Consensus 223 ~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 223 ELYRQPASRFMASFMG 238 (351)
T ss_pred HHHhCCCchHHHHhcC
Confidence 8764 55677777664
No 20
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.5e-56 Score=439.07 Aligned_cols=232 Identities=36% Similarity=0.601 Sum_probs=208.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... .. +++|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~---~r~i 78 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQ---KRDY 78 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH---HCCE
Confidence 4699999999999988999999999999999999999999999999999999999999999999876432 21 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+||+.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~------ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT------ 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987432 34556667789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|+++
T Consensus 152 -~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~----------~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~ 220 (353)
T TIGR03265 152 -SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG----------VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ 220 (353)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 69999999999999999999999999999875 4 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+.+|+.
T Consensus 221 ~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 221 EIYRHPATPFVADFVG 236 (353)
T ss_pred HHHhCCCCHHHHHhcC
Confidence 8764 44566666654
No 21
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4e-56 Score=440.59 Aligned_cols=237 Identities=34% Similarity=0.567 Sum_probs=211.1
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+....++|+++||+++|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.... ..
T Consensus 8 ~~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~-- 84 (375)
T PRK09452 8 PSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE-- 84 (375)
T ss_pred hccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH--
Confidence 334456799999999999888999999999999999999999999999999999999999999999999876432 21
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+++||||||++.+||++||+|||.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 85 -~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~- 161 (375)
T PRK09452 85 -NRHVNTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN- 161 (375)
T ss_pred -HCCEEEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc-
Confidence 236999999999999999999999986432 34555667788999999999999999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++
T Consensus 162 ------~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 162 ------KPKVLLLDESLSALDYKLRKQMQNELKALQRKLG----------ITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 69999999999999999999999999999875 5 599999999999999999999999999999
Q ss_pred eeccccccc-CCcHHHHHHhc
Q 018638 324 QGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 324 ~g~~~~~~~-~~~~~~~~~~~ 343 (352)
.|++++++. +.+..+.+|+.
T Consensus 226 ~g~~~~i~~~p~~~~~a~~~g 246 (375)
T PRK09452 226 DGTPREIYEEPKNLFVARFIG 246 (375)
T ss_pred EcCHHHHHhCcccHHHHHhcC
Confidence 999988764 45677777664
No 22
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.7e-56 Score=436.11 Aligned_cols=230 Identities=32% Similarity=0.536 Sum_probs=207.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc--eEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK--GEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~--G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+|+|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++.... . .+++|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~---~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P---HKRGL 81 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-H---HHCCE
Confidence 899999999998889999999999999999999999999999999999999999 99999999875421 1 12369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||++||+|||.|++... +.+..+..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~------ 154 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI------ 154 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc------
Confidence 99999999999999999999987433 34556677789999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~--g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|++++.|++
T Consensus 155 -~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g----------~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 155 -EPDVLLLDEPLSALDANIRANMREEIAALHEELPE----------LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEP 223 (362)
T ss_pred -CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 69999999999999999999999999999876 4 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
+++.. +.+.++..|+.
T Consensus 224 ~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 224 QALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHhCcCcHHHHHhhC
Confidence 98764 44566666654
No 23
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-55 Score=433.73 Aligned_cols=232 Identities=34% Similarity=0.566 Sum_probs=207.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... . .+++||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-A---RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-H---HHCCEE
Confidence 589999999999888999999999999999999999999999999999999999999999999875431 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||++.+||.+||+||+.|++... ...+.++..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~---- 153 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV---- 153 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999999999999999999976431 123455667789999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|+
T Consensus 154 ---~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g----------~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 154 ---EPQILLLDEPFGALDAQVRKELRRWLRQLHEELK----------FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred ---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 69999999999999999999999999999876 5 599999999999999999999999999999999
Q ss_pred cccccc-CCcHHHHHHhc
Q 018638 327 THEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~~ 343 (352)
+++++. +.+.++..|+.
T Consensus 221 ~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 221 PDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHhCccchHHHHhcC
Confidence 988754 45667776654
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-56 Score=413.22 Aligned_cols=224 Identities=40% Similarity=0.621 Sum_probs=201.2
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++........ .+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~-~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE-LRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH-hhcc
Confidence 479999999999765 89999999999999999999999999999999999999999999999998642111222 2447
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|||||+| .+|. -||++.++|++. +.+.+.+++.+++.++++.+|+.++.++.|.+||||||||||||.+|+.
T Consensus 81 vG~VfQnpd~q~~~-~tV~~evafg~~-n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~--- 155 (235)
T COG1122 81 VGLVFQNPDDQLFG-PTVEDEVAFGLE-NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM--- 155 (235)
T ss_pred eEEEEECccccccc-CcHHHHHhhchh-hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc---
Confidence 99999999 5564 699999999984 4456777899999999999999999999999999999999999999984
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++||||||||+||+..++.+++++++|+++++ .|+|++|||++++..+|||+++|++|+++.+|+
T Consensus 156 ----~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~---------~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 156 ----GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGG---------KTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC---------CeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 7999999999999999999999999999998742 599999999999999999999999999999999
Q ss_pred cccccc
Q 018638 327 THEFTS 332 (352)
Q Consensus 327 ~~~~~~ 332 (352)
+.++..
T Consensus 223 p~~i~~ 228 (235)
T COG1122 223 PAEIFN 228 (235)
T ss_pred HHHHhh
Confidence 888764
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.1e-55 Score=424.84 Aligned_cols=222 Identities=35% Similarity=0.566 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ... .+.+
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~--~~~-~~~~ 81 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR--ARH-ARQR 81 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc--hHH-HHhc
Confidence 3579999999999998999999999999999999999999999999999999999999999999987532 122 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+|+.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+||||||||++|||||++
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~----- 155 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYF-GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN----- 155 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999999999999998754332 34445556678899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|+++
T Consensus 156 --~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 156 --DPDVLVLDEPTTGLDPQARHLMWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999888
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 224 ~l~ 226 (306)
T PRK13537 224 ALI 226 (306)
T ss_pred HHH
Confidence 764
No 26
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-56 Score=410.67 Aligned_cols=236 Identities=34% Similarity=0.592 Sum_probs=213.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+++++++|+|+||+-.+++||||+|++||+++||||||||||||+|+|+|+++|++|+|+++|+++..+ ++....+..|
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l-~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC-CHHHHHhccc
Confidence 579999999999999999999999999999999999999999999999999999999999999999876 4455566689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
+.-||.+.+|++|||.||+..+...+. ....++..+++.++|+++||.+..+++..+||+|||+|+.||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 999999999999999999988753210 013466778899999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++||||||.+||.+....++.++|+++++++. .||++|.|||+.+..+||||+||+.
T Consensus 162 rALa~-------~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g---------~tillIEHdM~~Vm~l~dri~Vl~~ 225 (250)
T COG0411 162 RALAT-------QPKLLLLDEPAAGLNPEETEELAELIRELRDRGG---------VTILLIEHDMKLVMGLADRIVVLNY 225 (250)
T ss_pred HHHhc-------CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCC---------cEEEEEEeccHHHhhhccEEEeccC
Confidence 99986 6999999999999999999999999999998642 6999999999999999999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
|+++++|+|+++. .+|.+.+.|-|
T Consensus 226 G~~IAeG~P~eV~--~dp~VieAYLG 249 (250)
T COG0411 226 GEVIAEGTPEEVR--NNPRVIEAYLG 249 (250)
T ss_pred CcCcccCCHHHHh--cCHHhHHHhcC
Confidence 9999999999986 46777776654
No 27
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-55 Score=432.88 Aligned_cols=233 Identities=33% Similarity=0.529 Sum_probs=208.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+|+|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~---~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-P---YQRP 92 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-H---HHCC
Confidence 45799999999999888999999999999999999999999999999999999999999999999875432 1 1336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+||++||+|||.|++... +.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~----- 166 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK----- 166 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999987432 34556677789999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|++
T Consensus 167 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 234 (377)
T PRK11607 167 --RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG----------VTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234 (377)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCH
Confidence 69999999999999999999999999998765 4 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
++++. +.+.++.+|+.
T Consensus 235 ~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 235 EEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHhCCccHHHHHhcC
Confidence 98764 44566666653
No 28
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6e-55 Score=425.94 Aligned_cols=239 Identities=29% Similarity=0.528 Sum_probs=209.0
Q ss_pred cceEEEEeEEEEeCC-------------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 89 DVLIDCRNVYKSFGE-------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-------------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.++|+++||+++|+. ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+|+|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 478999999999962 5699999999999999999999999999999999999999999999999998
Q ss_pred CCCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChH
Q 018638 156 AGLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGG 230 (352)
Q Consensus 156 ~~~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGG 230 (352)
....... ...+.+|+||||++ .++|.+||++||.+++..+. ..+.++..+++.++++.+||. +..+++|++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 6542221 11234699999998 68888999999998764332 345666777889999999994 5789999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++
T Consensus 166 ~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~----------~til~iTHdl~~~~~~ 228 (331)
T PRK15079 166 QCQRIGIARALIL-------EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG----------LSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHh
Confidence 9999999999996 69999999999999999999999999999875 5 5999999999999999
Q ss_pred cCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
||||++|++|+|++.|+++++. .+.+++++.++..
T Consensus 229 ~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~~ 264 (331)
T PRK15079 229 SDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSA 264 (331)
T ss_pred CCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHhh
Confidence 9999999999999999988875 4568998887754
No 29
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-55 Score=420.85 Aligned_cols=221 Identities=38% Similarity=0.653 Sum_probs=198.7
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+++++||+|+|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.... ... .+++
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~-~~~~ 79 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAK-VRRR 79 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHH-HHhh
Confidence 3588999999999 69999999999999999999999999999999999999999999999999987532 112 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+++.+||+||+.|....+.. ......++++++++.+||.+..++++++||+|||||++||+||++
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~----- 153 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH----- 153 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999998765543 224456679999999999987789999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+||||.++.+++++|++++++|+ +||+++||.++++..+||||++|++|++++.|+++
T Consensus 154 --~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~---------~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 154 --DPELLILDEPTSGLDPESRREIWELLRELAKEGG---------VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred --CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC---------cEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 5999999999999999999999999999998862 59999999999999999999999999999999877
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
++
T Consensus 223 ~l 224 (293)
T COG1131 223 EL 224 (293)
T ss_pred HH
Confidence 65
No 30
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-56 Score=419.06 Aligned_cols=237 Identities=36% Similarity=0.578 Sum_probs=215.3
Q ss_pred eEEEEeEEEEeCCe------------------------eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 91 LIDCRNVYKSFGEK------------------------HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 91 ~l~~~nls~~y~~~------------------------~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
.|+++||+|-||.+ ..++|+||+|++||++.|+|-||||||||+|+|++|.+|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999731 257899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC
Q 018638 147 EVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP 224 (352)
Q Consensus 147 ~I~i~G~~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~ 224 (352)
+|+++|+++....... +.+++++++|||++.|+|+.||.||+.|++. ..+.++++.++++.++|+.+||+++.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe-v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-ecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999987754332 2345579999999999999999999999984 456788888999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
++|||||||||.|||||+. +|+|||+|||||+|||--+.++++.|.+|.++-+ +||||||||++
T Consensus 163 ~eLSGGMqQRVGLARAla~-------~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~---------KTIvFitHDLd 226 (386)
T COG4175 163 NELSGGMQQRVGLARALAN-------DPDILLMDEAFSALDPLIRTEMQDELLELQAKLK---------KTIVFITHDLD 226 (386)
T ss_pred ccccchHHHHHHHHHHHcc-------CCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC---------CeEEEEecCHH
Confidence 9999999999999999986 6999999999999999999999999999987632 59999999999
Q ss_pred HHHhhcCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 305 TIRRAVDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.++.|||.+|++|+|++.|+|+|+. ++.++|+..|+.+
T Consensus 227 EAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 227 EALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred HHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 999999999999999999999999965 6779999999976
No 31
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-54 Score=429.55 Aligned_cols=231 Identities=33% Similarity=0.548 Sum_probs=205.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~---~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PA---ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-Hh---HCCEE
Confidence 499999999999888999999999999999999999999999999999999999999999999875431 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+.+||+||+.|++... +.+..+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~------- 150 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999876432 23455566778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.+.|+++.++ | .|+|+||||++++..+||||++|++|++++.|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999999988
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
+.. +.+..+..|+.
T Consensus 221 i~~~p~~~~~~~~~g 235 (369)
T PRK11000 221 LYHYPANRFVAGFIG 235 (369)
T ss_pred HHhCcccHHHHHhcC
Confidence 754 45566666654
No 32
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-55 Score=388.73 Aligned_cols=221 Identities=37% Similarity=0.590 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||.+++|.++|+..+ =..+++|+.||++||+|||||||||||++|+|++.|.+|+|+|+|++...... ..+-++
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P----~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP----AERPVS 74 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc----ccCChh
Confidence 478899999998754 37889999999999999999999999999999999999999999999765322 223599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
++||+.+||.++||.+||.+++...-..+. +.+++++.++.++||.++.+|.|.+|||||||||||||+|++
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR------- 146 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR------- 146 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-------
Confidence 999999999999999999998754433443 446778999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+-+|||||||||+|||.-+.+++.++.+++.+.+ .|++||||+++++.+++||++++++|+|.++|++.++
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~---------~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERK---------MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC---------CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 4889999999999999999999999999987642 6999999999999999999999999999999999887
Q ss_pred ccCC
Q 018638 331 TSSS 334 (352)
Q Consensus 331 ~~~~ 334 (352)
+...
T Consensus 218 ~~~~ 221 (231)
T COG3840 218 LSGK 221 (231)
T ss_pred hccC
Confidence 6543
No 33
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-54 Score=401.77 Aligned_cols=236 Identities=36% Similarity=0.564 Sum_probs=203.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 58999999999988899999999999999999999999999999999999999999999999987532111112234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++.....+....+..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV------- 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998764222223444556678899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..+.++|+++++++ .|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG----------MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999988877
Q ss_pred cc-CCcHHHHHHhc
Q 018638 331 TS-SSNPIVQQFAS 343 (352)
Q Consensus 331 ~~-~~~~~~~~~~~ 343 (352)
.. +.++...+++.
T Consensus 224 ~~~~~~~~~~~~~~ 237 (240)
T PRK09493 224 IKNPPSQRLQEFLQ 237 (240)
T ss_pred hcCCchHHHHHHhh
Confidence 54 33556666654
No 34
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-54 Score=423.00 Aligned_cols=235 Identities=36% Similarity=0.593 Sum_probs=204.8
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh-hc
Q 018638 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-IS 165 (352)
Q Consensus 91 ~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-~~ 165 (352)
||+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 4679999999999999999999999999999999999999999999999998764322211 12
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+||||||++.+|+.+||+||+.++.... +.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-- 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS-- 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc--
Confidence 346999999999999899999999875432 34455556778899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | +|||++|||++++.++||||++|++|++++.
T Consensus 158 -----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 158 -----NPKVLLCDEATSALDPATTRSILELLKDINRELG----------LTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhc
Q 018638 325 GMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~ 343 (352)
|+++++.. +.++....++.
T Consensus 223 g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 223 GTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred cCHHHHHhCCCcHHHHHHHh
Confidence 98888754 34556666654
No 35
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.4e-54 Score=408.60 Aligned_cols=237 Identities=35% Similarity=0.629 Sum_probs=204.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
.+|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5799999999999889999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|+||++.+|+.+||.||+.++.......+.....+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~----- 160 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL----- 160 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999999899999998865332223344445567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||+||||++++.++||++++|++|++++.|++
T Consensus 161 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 161 --EPDLIMFDEPFVGQDPITMGVLVKLISELNSALG----------VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred --CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCH
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999988
Q ss_pred cccccCCcHHHHHHhc
Q 018638 328 HEFTSSSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~~ 343 (352)
+++....++.++.++.
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 229 QALQANPDPRVRQFLD 244 (269)
T ss_pred HHHhcCCcHHHHHHHH
Confidence 8876544555566664
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.2e-54 Score=423.36 Aligned_cols=223 Identities=36% Similarity=0.565 Sum_probs=199.6
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~-~~~ 114 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARL-ARA 114 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHH-Hhc
Confidence 34689999999999999999999999999999999999999999999999999999999999999987532 122 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||++
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~---- 189 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN---- 189 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999999999998754332 23444455677889999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|++
T Consensus 190 ---~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g----------~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 190 ---DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 599999999999999999999999999998766 5999999999999999999999999999999998
Q ss_pred cccc
Q 018638 328 HEFT 331 (352)
Q Consensus 328 ~~~~ 331 (352)
+++.
T Consensus 257 ~~l~ 260 (340)
T PRK13536 257 HALI 260 (340)
T ss_pred HHHH
Confidence 8764
No 37
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-54 Score=400.48 Aligned_cols=231 Identities=38% Similarity=0.599 Sum_probs=200.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-V---QERNVG 77 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---cccceE
Confidence 589999999999888999999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|++|++.+|+.+||.||+.++...... ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~---- 153 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV---- 153 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc----
Confidence 999999999889999999886532211 1233445667889999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||++|||++++..+|||+++|++|++++.|+
T Consensus 154 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 154 ---EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH----------VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 69999999999999999999999999999875 5 599999999999999999999999999999998
Q ss_pred cccccc-CCcHHHHHHh
Q 018638 327 THEFTS-SSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~ 342 (352)
++++.. +.++....++
T Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (239)
T cd03296 221 PDEVYDHPASPFVYSFL 237 (239)
T ss_pred HHHHhcCCCcHHHHHHh
Confidence 887653 3345555554
No 38
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-54 Score=419.76 Aligned_cols=239 Identities=28% Similarity=0.500 Sum_probs=208.9
Q ss_pred cceEEEEeEEEEeCC----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC
Q 018638 89 DVLIDCRNVYKSFGE----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (352)
Q Consensus 89 ~~~l~~~nls~~y~~----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~ 158 (352)
+++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 467999999999962 5799999999999999999999999999999999999999999999999998654
Q ss_pred CChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHH
Q 018638 159 ISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKR 234 (352)
Q Consensus 159 ~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQR 234 (352)
.... ...+.+|+||||++ .+++.+||.+++.+.+..+......+..+++.++++.+||. ...+++|++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2211 11234699999998 58888999999987664433345556667889999999996 47899999999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|+|||||+. +|++||+||||++||+.++..++++|++++++ | .|+|+||||++.+.++||||
T Consensus 163 v~iArAL~~-------~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 163 IAIARALML-------DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG----------LSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred HHHHHHHHc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEE
Confidence 999999996 69999999999999999999999999999875 5 59999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++|+|++.|+++++. .+.+++++.++..
T Consensus 226 ~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred EEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 999999999999988876 4568999988764
No 39
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.2e-54 Score=400.66 Aligned_cols=222 Identities=36% Similarity=0.618 Sum_probs=194.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC-HHHHHhcCEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875432 22222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCC---------CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKM---------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~---------~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+||++.+|+.+||+||+.++....... ...+..+++.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999998865322111 13344567889999999998999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|++++++| .|||++|||++++..+||++++|++|+++
T Consensus 160 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 160 T-------DPKLLLLDEPAAGLNPEETEELAELIRELRERG----------ITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 7 699999999999999999999999999997665 59999999999999999999999999999
Q ss_pred Eeecccccc
Q 018638 323 WQGMTHEFT 331 (352)
Q Consensus 323 ~~g~~~~~~ 331 (352)
+.|+++++.
T Consensus 223 ~~~~~~~~~ 231 (236)
T cd03219 223 AEGTPDEVR 231 (236)
T ss_pred eecCHHHhc
Confidence 999877764
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.2e-54 Score=396.01 Aligned_cols=213 Identities=35% Similarity=0.560 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccc
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~ 167 (352)
||+++||+++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ...+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999964 46999999999999999999999999999999999999999999999999875322111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~---- 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH---- 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc----
Confidence 6999999999999899999999875422 23344455678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||++++|++|+|
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 ---KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRG----------TTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred ---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 699999999999999999999999999997665 5999999999999999999999999975
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.8e-54 Score=415.13 Aligned_cols=222 Identities=35% Similarity=0.561 Sum_probs=197.3
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+.+|+++||+|+|+++.+|++|||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~ 78 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR--ARL-ARVA 78 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--HHH-Hhhc
Confidence 3579999999999988899999999999999999999999999999999999999999999999986432 111 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|||+||++.+++.+||+||+.+....+ +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~----- 152 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN----- 152 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc-----
Confidence 999999999998899999998644222 23444455667889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+++|++|+++..|+++
T Consensus 153 --~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g----------~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 153 --DPQLLILDEPTTGLDPHARHLIWERLRSLLARG----------KTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred --CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999887
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 221 ~~~ 223 (303)
T TIGR01288 221 ALI 223 (303)
T ss_pred HHH
Confidence 764
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-54 Score=395.96 Aligned_cols=217 Identities=35% Similarity=0.595 Sum_probs=193.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.+++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PRE-VRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC--hHH-HhhcEEE
Confidence 5799999999988999999999999999999999999999999999999999999999999886431 112 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+||++|+.+....+ +....+..+++.++++.++|.+..++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~-------~ 149 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH-------R 149 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865332 23344456678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
|++|||||||++||+.++..+.++|+++.++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG----------MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999876 5 599999999999999999999999999999886654
No 43
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.4e-54 Score=425.90 Aligned_cols=228 Identities=32% Similarity=0.510 Sum_probs=201.7
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--hccceEEEEecCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~~~~~ig~v~Q~~ 176 (352)
|+|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .++++|+||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 56888899999999999999999999999999999999999999999999999999865422211 1234799999999
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
.+|+.+||+|||.|+.... +.+.++..+++.++++.+||+.+.+++|.+|||||||||+|||||+. +|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~-------~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA-------EPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 9999999999999976432 34566677889999999999999999999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SS 334 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~ 334 (352)
|||||++||+.++..+++.|.+++++ + +|||+||||++++.++||||++|++|++++.|+++++.. +.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~----------~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQ----------KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence 99999999999999999999999765 5 599999999999999999999999999999999888754 45
Q ss_pred cHHHHHHhcC
Q 018638 335 NPIVQQFASG 344 (352)
Q Consensus 335 ~~~~~~~~~~ 344 (352)
++++..|+..
T Consensus 223 ~~~~~~~~~~ 232 (363)
T TIGR01186 223 NEYVEEFIGK 232 (363)
T ss_pred cHHHHHHhhc
Confidence 6777777643
No 44
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-54 Score=411.23 Aligned_cols=238 Identities=31% Similarity=0.563 Sum_probs=211.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-C----CceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-P----DKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p----~~G~I~i~G~~~~~~~~~ 161 (352)
+|+++||+.+|.. ..+++||||+|++||++||||.|||||||+.+.|+||++ | .+|+|.|+|+++..+...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999953 479999999999999999999999999999999999998 4 579999999998776443
Q ss_pred h--hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHH
Q 018638 162 E--EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (352)
Q Consensus 162 ~--~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQ 233 (352)
. ..+.+.|+||||+| .|.|-+||.+.+...+..+... .+++..+++.++|+.+|+.+ .++++|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 23455799999998 6899999999998887665544 46677888999999999964 679999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
||.||.||+. +|++||.||||++||...+.+++++|++++++.+ .|+|+||||+..+.++||||
T Consensus 161 RV~IAmala~-------~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~---------~aiilITHDl~vva~~aDri 224 (316)
T COG0444 161 RVMIAMALAL-------NPKLLIADEPTTALDVTVQAQILDLLKELQREKG---------TALILITHDLGVVAEIADRV 224 (316)
T ss_pred HHHHHHHHhC-------CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhcceE
Confidence 9999999986 6999999999999999999999999999987521 69999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+||+.|+||+.|++++++ ++.|||++.++..
T Consensus 225 ~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 225 AVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999966 6789999999875
No 45
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9e-54 Score=404.68 Aligned_cols=240 Identities=29% Similarity=0.509 Sum_probs=206.0
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~---------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 36799999999999999999999999999999999999999999999999987543221
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
. ...+.+|+|+||++ .+++.+||+||+.+.+.........+..+++.++++.+|+. ...++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 11233699999997 46677899999987653222233444456788999999996 67899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+. +|++|||||||++||+.++..+.++|+++.++ | .|||+||||++.+..+||++++|
T Consensus 162 aral~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 162 ARALAV-------KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG----------TAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHHhcEEEEE
Confidence 999997 69999999999999999999999999999865 5 59999999999999999999999
Q ss_pred eCCeEEEeecccccccCCcHHHHHHhcCCCCC
Q 018638 317 YEGKIVWQGMTHEFTSSSNPIVQQFASGSLEG 348 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (352)
++|++++.|+++++....+++++.++ +.+.+
T Consensus 225 ~~G~i~~~g~~~~~~~~~~~~~~~~~-~~~~~ 255 (265)
T TIGR02769 225 DKGQIVEECDVAQLLSFKHPAGRNLQ-SAVLP 255 (265)
T ss_pred eCCEEEEECCHHHHcCCCCHHHHHHH-HhccC
Confidence 99999999999888777888888887 44444
No 46
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=8.2e-54 Score=400.43 Aligned_cols=236 Identities=36% Similarity=0.534 Sum_probs=203.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC------hhhh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS------DEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~------~~~~ 164 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 6999999999998889999999999999999999999999999999999999999999999998743210 0111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+.+++|+||++.+|+.+|++||+.++.........++..+++.++++.+|+....++++.+|||||||||+|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~- 161 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM- 161 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc-
Confidence 2336999999999998899999998754222223444455678899999999988899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..+.++|+++.++| .|||++|||++++.++||++++|++|++++.
T Consensus 162 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 162 ------RPEVILFDEPTSALDPELVGEVLNTIRQLAQEK----------RTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 699999999999999999999999999998766 5999999999999999999999999999999
Q ss_pred eccccccc-CCcHHHHHHhc
Q 018638 325 GMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 325 g~~~~~~~-~~~~~~~~~~~ 343 (352)
|+++++.. +.++..+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 226 GPAKALFADPQQPRTRQFLE 245 (250)
T ss_pred CCHHHHhcCCCCHHHHHHHH
Confidence 98888653 34566666654
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-54 Score=393.15 Aligned_cols=212 Identities=39% Similarity=0.655 Sum_probs=188.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-P---ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-h---hhccEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+. +
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~-------~ 148 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR-------E 148 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998865322 23344455678899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..++++|++++++ | .|||++|||++++.++||++++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELG----------ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999764 5 59999999999999999999999999998764
No 48
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.4e-53 Score=398.81 Aligned_cols=235 Identities=32% Similarity=0.519 Sum_probs=202.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++..........
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 589999999999888999999999999999999999999999999999999998 999999999875321111122
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+ +|++||+.+...........+..+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 346999999999998 899999988653222123445566788999999998 778999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..++++|++++++ .|||+||||++++..+|||+++|++|++
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 160 AV-------EPEVLLLDEPTSALDPIATGKIEELIQELKKK-----------YTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-----------CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 97 69999999999999999999999999998764 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++.|+++++.. +.++.+.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
T TIGR00972 222 VEYGPTEQIFTNPKEKRTEDYISG 245 (247)
T ss_pred EEeCCHHHHHhCCCChHHHHHhcc
Confidence 99998888754 456666776653
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.8e-54 Score=395.74 Aligned_cols=221 Identities=32% Similarity=0.594 Sum_probs=195.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP-MHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC-HhHHHhccEEE
Confidence 57899999999889999999999999999999999999999999999999999999999999865432 11222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+||+||+.+....+ .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT-------N 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998864322 23334445677899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|++|||||||+|||+.++..+.++|+++.+++ .|||++|||++.+.++||++++|++|++++.|+.+++.
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG----------IGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 99999999999999999999999999998765 59999999999999999999999999999999877764
No 50
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-53 Score=416.34 Aligned_cols=236 Identities=26% Similarity=0.459 Sum_probs=205.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC----CCceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5999999999976 479999999999999999999999999999999999998 48999999999986543222
Q ss_pred h--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHHH
Q 018638 163 E--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRV 235 (352)
Q Consensus 163 ~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQRv 235 (352)
. ..+.+|+||||++ .++|.+|+.+++...+..+.+...++..+++.++++.+||.+ ..+++|++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1 1223699999998 578889999998876644333455566778899999999963 57899999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|++||+||||++||+.++.+++++|++++++ | .|+|+||||++.+.++||||+
T Consensus 163 ~iArAL~~-------~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g----------~til~iTHdl~~~~~~adri~ 225 (326)
T PRK11022 163 MIAMAIAC-------RPKLLIADEPTTALDVTIQAQIIELLLELQQKEN----------MALVLITHDLALVAEAAHKII 225 (326)
T ss_pred HHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 99999997 69999999999999999999999999999874 5 599999999999999999999
Q ss_pred EEeCCeEEEeecccccc-cCCcHHHHHHhc
Q 018638 315 FLYEGKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
+|++|+|++.|+++++. .+.+++++.++.
T Consensus 226 vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 226 VMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred EEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 99999999999998876 467899988865
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-54 Score=397.23 Aligned_cols=223 Identities=38% Similarity=0.611 Sum_probs=195.7
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~ 165 (352)
||+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999876 8999999999999999999999999999999999999999999999999875432111 111
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+|+|+||++.+|+.+|++||+.+..... +.......+.+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN-- 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc--
Confidence 336999999999999899999998865322 23344445678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++..+||++++|++|++++.
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 158 -----NPKVLLCDEATSALDPETTQSILALLRDINRELG----------LTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred -----CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999775 5 5999999999999999999999999999999
Q ss_pred ecccccc
Q 018638 325 GMTHEFT 331 (352)
Q Consensus 325 g~~~~~~ 331 (352)
|+++++.
T Consensus 223 ~~~~~~~ 229 (233)
T cd03258 223 GTVEEVF 229 (233)
T ss_pred cCHHHHh
Confidence 9776654
No 52
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-53 Score=416.27 Aligned_cols=239 Identities=26% Similarity=0.470 Sum_probs=207.9
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCCh
Q 018638 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISD 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~ 161 (352)
.++|+++||+++|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+|+|+++......
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 46899999999994 357999999999999999999999999999999999999996 99999999998654322
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHH
Q 018638 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKR 234 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQR 234 (352)
.. .++.+|+||||++ .++|.+|+.+|+.+.+..+.....++..+++.++++.+||.+ ..+++|++||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 21 1223699999998 688999999999876644433455566677899999999964 4578999999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|+|||||+. +|++||+||||++||+.++..++++|++++++ | .|+|+||||++.+.++||||
T Consensus 170 v~IArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 170 VMIAMALLC-------RPKLLIADEPTTALDVTVQAQIMTLLNELKREFN----------TAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred HHHHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhCCEE
Confidence 999999996 69999999999999999999999999999875 5 69999999999999999999
Q ss_pred EEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 314 IFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++|+|++.|+++++. .+.+++++.++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~~ 264 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFYQPSHPYSIGLLNA 264 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999998875 4678999988754
No 53
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-55 Score=393.15 Aligned_cols=220 Identities=32% Similarity=0.572 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||++.+++|+|+... +++||||++++||++||+|||||||||+||+|++|+.|++|.|+++|.+....+ ...+++|
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p---~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP---SFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh---HHHhhhc
Confidence 689999999999865 999999999999999999999999999999999999999999999999865432 2234579
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|.+|.+..+|..||++|||.|....+ ++...+++.+++++.+.++|.+.++++..+||.||||||+|||||++
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh------ 150 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH------ 150 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc------
Confidence 99998889999999999999876444 46777888999999999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++++|||||+|||..+++.+.+.|++++.+| .+||++||.|++++.+||||++|++|+++..|++++
T Consensus 151 -~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg----------r~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 151 -DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG----------RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred -CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC----------cEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 599999999999999999999999999998877 599999999999999999999999999999999988
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 220 l~ 221 (245)
T COG4555 220 LD 221 (245)
T ss_pred HH
Confidence 64
No 54
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3e-53 Score=398.95 Aligned_cols=240 Identities=34% Similarity=0.548 Sum_probs=205.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC---------C
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---------S 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~---------~ 160 (352)
.+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 4599999999999889999999999999999999999999999999999999999999999998764210 0
Q ss_pred --hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCChHHHHHHHH
Q 018638 161 --DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 --~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSGGqrQRvaI 237 (352)
.....+.+++|+||++.+++.+||+||+.++..........+..+++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 111123469999999999998999999987542222234445566788999999998764 88999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|+
T Consensus 164 aral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 164 ARALAM-------EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999997 699999999999999999999999999998766 599999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHhcCCC
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFASGSL 346 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~~~~~ 346 (352)
+|++++.|+++++.. +.++..++++.+++
T Consensus 227 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (257)
T PRK10619 227 QGKIEEEGAPEQLFGNPQSPRLQQFLKGSL 256 (257)
T ss_pred CCEEEEeCCHHHhhhCccCHHHHHHhhccC
Confidence 999999998887653 34567777876653
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-55 Score=393.90 Aligned_cols=235 Identities=29% Similarity=0.519 Sum_probs=212.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|.++||.|+|+.++++++|||+|++||++||+|||||||||.+.++.||.+||+|+|+++|.|++.++- ..+++..|
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm-~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh-HHHhhcCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999987643 34456689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||++..|..+||+|||...+..... ....+.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~----- 156 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAA----- 156 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhc-----
Confidence 9999999999999999999887754432 2223445567899999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+++||||||+|+||.+..++.++++.|+..| ..|+++-|+..+...+|||.+++.+|+|.++|+++
T Consensus 157 --~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg----------iGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ 224 (243)
T COG1137 157 --NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG----------IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPE 224 (243)
T ss_pred --CCCEEEecCCccCCCchhHHHHHHHHHHHHhCC----------ceEEEccccHHHHHhhhheEEEEecCeEEecCCHH
Confidence 699999999999999999999999999999887 68999999999999999999999999999999999
Q ss_pred ccccCCcHHHHHHhcC
Q 018638 329 EFTSSSNPIVQQFASG 344 (352)
Q Consensus 329 ~~~~~~~~~~~~~~~~ 344 (352)
++. .++.+++.+.|
T Consensus 225 ei~--~n~~Vr~~YLG 238 (243)
T COG1137 225 EIV--NNEDVRRVYLG 238 (243)
T ss_pred HHh--cChhhhhhccc
Confidence 986 35778887765
No 56
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-53 Score=395.71 Aligned_cols=235 Identities=31% Similarity=0.501 Sum_probs=200.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC--C--hhhhcc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI--S--DEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~--~--~~~~~~ 166 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .....+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 689999999999889999999999999999999999999999999999999999999999999763110 0 111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+|+|+||++.+|+.+||+||+.+......+....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~--- 158 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM--- 158 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc---
Confidence 36999999999999899999997532222223344455678899999999989999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++.++||++++|++|++++.|+
T Consensus 159 ----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 159 ----EPQVLLFDEPTAALDPEITAQIVSIIRELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred ----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 599999999999999999999999999997666 599999999999999999999999999999998
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
++++..+.++...+++
T Consensus 225 ~~~~~~~~~~~~~~~~ 240 (242)
T PRK11124 225 ASCFTQPQTEAFKNYL 240 (242)
T ss_pred HHHhcCcccHHHHHhh
Confidence 8776554455555554
No 57
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-53 Score=424.45 Aligned_cols=237 Identities=34% Similarity=0.568 Sum_probs=204.1
Q ss_pred ceEEEEeEEEEeCCee------------------------eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc
Q 018638 90 VLIDCRNVYKSFGEKH------------------------ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~------------------------~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~ 145 (352)
.+|+++||+|.||..+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3577777777776543 8999999999999999999999999999999999999999
Q ss_pred eEEEECCEeCCCCCChh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC
Q 018638 146 GEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL 223 (352)
Q Consensus 146 G~I~i~G~~~~~~~~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~ 223 (352)
|+|+|+|+++....... ...+.++||+||++.+|+.+||+||+.+++... +...++..+++.++++.+||.++.+++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 99999999876432211 112346999999999999999999999876432 234455566788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCC
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHd 302 (352)
|.+|||||||||+|||||+. +|++|||||||++||+.++..++++|.+++++ + +|||+||||
T Consensus 162 ~~~LSgGq~QRv~LArAL~~-------~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g----------~TIIivTHd 224 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAI-------NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ----------RTIVFISHD 224 (400)
T ss_pred cccCCHHHHHHHHHHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECC
Confidence 99999999999999999997 59999999999999999999999999999764 5 599999999
Q ss_pred HHHHHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 303 HSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 303 l~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.++||||++|++|+|++.|+++++.. +.++++..|+.+
T Consensus 225 ~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 999999999999999999999998888754 456778888764
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-53 Score=407.49 Aligned_cols=222 Identities=35% Similarity=0.586 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999999875421111112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+||||||++ .+|+ .||+||+.|+.... +.++++..+++.++++.+||. ++.++++.+||||||||++|||||
T Consensus 82 ~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFE-ETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhcccc-ccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 34799999997 3454 79999999865332 355666677889999999997 678999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++|+
T Consensus 160 ~~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 160 AM-------EPKILILDEPTAGLDPKGRDEILNKIKELHKEYN----------MTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred Hc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 97 69999999999999999999999999999875 5 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13637 223 CELQGTPREVF 233 (287)
T ss_pred EEEECCHHHHH
Confidence 99999888764
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-53 Score=393.75 Aligned_cols=219 Identities=38% Similarity=0.593 Sum_probs=188.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-----~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|+++|+++..........+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999888999999999999999999999999999999999999 9999999999998754321011123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC--CCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL--PSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~--~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+++|+||++.+| .+||+||+.++..........+..+++.++++.+|+.+..++. +.+|||||||||+|||||+.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~- 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN- 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc-
Confidence 4699999999888 6899999988653222112223456788999999998877776 59999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++ .|||++|||++++..+|||+++|++|++++.
T Consensus 159 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 159 ------EPEVLLLDEPTSALDPISTAKIEELIAELKKE-----------YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred ------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-----------cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 69999999999999999999999999999765 3999999999999999999999999999999
Q ss_pred ecccc
Q 018638 325 GMTHE 329 (352)
Q Consensus 325 g~~~~ 329 (352)
|++++
T Consensus 222 g~~~~ 226 (227)
T cd03260 222 GPTEQ 226 (227)
T ss_pred cCccc
Confidence 97655
No 60
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-53 Score=425.15 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=199.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .... +++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~-~~~~-~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS-ARAA-SRRV 79 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-HHHH-hcce
Confidence 4799999999999999999999999999999999999999999999999999999999999999876532 2222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-CCC--HHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-KMR--DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-~~~--~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+|++.+++.+||+||+.++.+.+. ... ..+..+++.++++.+|+.++.++++.+|||||||||+|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~--- 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ--- 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 999999999888999999998653221 111 23345678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++.+++++|++++++| .|||++|||++++.++|||+++|++|++++.|+
T Consensus 157 ----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g----------~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 157 ----ATPVLLLDEPTASLDINHQVRTLELVRRLVDDG----------KTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred ----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 699999999999999999999999999998765 599999999999999999999999999999999
Q ss_pred cccccc
Q 018638 327 THEFTS 332 (352)
Q Consensus 327 ~~~~~~ 332 (352)
++++..
T Consensus 223 ~~ev~~ 228 (402)
T PRK09536 223 PADVLT 228 (402)
T ss_pred HHHHhC
Confidence 888764
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.4e-53 Score=388.00 Aligned_cols=212 Identities=36% Similarity=0.602 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~---~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-P---KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-c---ccceEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.++.... ....++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~-------~ 148 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR-------E 148 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864322 23445556678899999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|++++++ + .|||++|||++++..+||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG----------TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999865 5 59999999999999999999999999998765
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-53 Score=390.24 Aligned_cols=214 Identities=34% Similarity=0.631 Sum_probs=190.5
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
||+++||+++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++... .... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~-~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEA-R 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHH-H
Confidence 58999999999876 799999999999999999999999999999999999999999999999987531 2222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+++|+||++.+|+.+||+||+.+....+ +....+..+++.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~--- 153 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH--- 153 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc---
Confidence 46999999999999899999998765322 23444556778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+|||+++|++|++++.|
T Consensus 154 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 ----DPPVLLLDEPTTGLDVMATRALREFIRQLRALG----------KCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred ----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 699999999999999999999999999997666 59999999999999999999999999998654
No 63
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-53 Score=391.35 Aligned_cols=219 Identities=31% Similarity=0.525 Sum_probs=190.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP-PHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCC-HHHHHhcCeEE
Confidence 57899999999888999999999999999999999999999999999999999999999999875432 22222336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++.+|+.+|++||+.++..... ..+..+++.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS------- 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999988653221 223345567788888 57888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..++++|+++++++ .|||++|||++++.++||++++|++|++++.|+++++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG----------VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999876654
Q ss_pred c
Q 018638 331 T 331 (352)
Q Consensus 331 ~ 331 (352)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 3
No 64
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-53 Score=397.45 Aligned_cols=223 Identities=34% Similarity=0.536 Sum_probs=192.9
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 588999999998 778999999999999999999999999999999999999999999999999875422111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
++|+||++.+|+.+||+||+.++.... ......+..+++.++++.+|+.+..++.+.+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999998899999998753211 0111223356688899999999889999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|+++.++ | .|||+||||++++.++||++++|++|+
T Consensus 161 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 161 AQ-------QPDLILADEPIASLDPKTSKQVMDYLKRINKEDG----------ITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 97 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeeccccc
Q 018638 321 IVWQGMTHEF 330 (352)
Q Consensus 321 iv~~g~~~~~ 330 (352)
+++.|+++++
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999987775
No 65
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.3e-53 Score=395.95 Aligned_cols=236 Identities=35% Similarity=0.522 Sum_probs=203.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC----------C-
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI----------S- 160 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~----------~- 160 (352)
|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 57999999999888999999999999999999999999999999999999999999999999875321 0
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.....+.+++|+||++.+|+.+|+.||+.++.....+....+..+.+.++++.+|+.+..++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 00112346999999999998899999998753222223444555678899999999989999999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||++||+.++..+.++|+++.++ | .|+|++|||++++..+|||+++|++|
T Consensus 161 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 161 LAM-------RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHD----------LTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 997 69999999999999999999999999999765 5 59999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++.+..++.+
T Consensus 224 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 249 (252)
T TIGR03005 224 RIVEQGKPDEIFRQPKEERTREFLSK 249 (252)
T ss_pred EEEEeCCHHHHhcCCCcHHHHHHHhh
Confidence 9999998887653 456777777653
No 66
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-53 Score=412.43 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=201.9
Q ss_pred ceEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC----CCceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~----p~~G~I~i~G~~~~~~~~~ 161 (352)
++|+++||+++| +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|+|+|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 369999999999 44679999999999999999999999999999999999997 5899999999997654322
Q ss_pred hh--hccceEEEEecCCC--CCCCCCHHHHHHhhhhhc--CC---CCHHHHHHHHHHHHHHcCCCc---ccccCCCCCCh
Q 018638 162 EE--ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYEN--SK---MRDEQISELVKENLAAVGLKG---VEDRLPSELSG 229 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~--~~---~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSG 229 (352)
.. ..+.+|+||||++. +++.+||.+|+.+.+..+ .+ ....+..+++.++|+.+||.+ ..+++|.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 21 12336999999985 678899999997643211 11 112334567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
||||||+|||||+. +|++|||||||++||+.++.+++++|++++++ | .|||+||||++.+.+
T Consensus 162 G~~QRv~iArAL~~-------~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g----------~tii~itHdl~~v~~ 224 (330)
T PRK15093 162 GECQKVMIAIALAN-------QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNN----------TTILLISHDLQMLSQ 224 (330)
T ss_pred HHHHHHHHHHHHHC-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHH
Confidence 99999999999996 69999999999999999999999999999875 5 699999999999999
Q ss_pred hcCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 309 AVDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 309 ~aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+||||++|++|+|++.|+++++. .+.+++++.++..
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999988875 4568888887764
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-53 Score=394.89 Aligned_cols=222 Identities=35% Similarity=0.549 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh-hhhccceE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~-~~~~~~~i 169 (352)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 7899999999999999999999999999999999999999999999999987543210 11123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+.+||+||+.++.... .........+++.++++.+++.+..++.+.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 99999999998899999998754210 01112233456788999999998899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+||++++|++|++
T Consensus 161 ~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~~~d~v~~l~~G~i 223 (241)
T cd03256 161 Q-------QPKLILADEPVASLDPASSRQVMDLLKRINREEG----------ITVIVSLHQVDLAREYADRIVGLKDGRI 223 (241)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7 69999999999999999999999999999764 5 5999999999999999999999999999
Q ss_pred EEeeccccc
Q 018638 322 VWQGMTHEF 330 (352)
Q Consensus 322 v~~g~~~~~ 330 (352)
++.|+++++
T Consensus 224 ~~~~~~~~~ 232 (241)
T cd03256 224 VFDGPPAEL 232 (241)
T ss_pred EeecCHHHh
Confidence 999987775
No 68
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-53 Score=388.26 Aligned_cols=211 Identities=39% Similarity=0.629 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-------~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-------PGP 73 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-------ccC
Confidence 578999999987 789999999999999999999999999999999999999999999999998642 123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+++|+||++.+|+.+|++||+.++.... +.......+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~---- 148 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV---- 148 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc----
Confidence 6999999999998899999998865322 23334445678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|+++.++ + .|||+|||+++++..+||++++|+ +|+++++
T Consensus 149 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 149 ---DPDVLLLDEPFSALDALTREQLQEELLDIWRETG----------KTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 69999999999999999999999999999654 5 599999999999999999999999 7999988
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
++.
T Consensus 216 ~~~ 218 (220)
T cd03293 216 VEV 218 (220)
T ss_pred EEe
Confidence 754
No 69
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-53 Score=395.69 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999999997 489999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CcccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL----~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ +||+||+.++.............+++.++++.+++ .+..++++.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 2346999999998885 89999999875332212334456678889999987 356788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..++++|+++++ + .|||++||+++++.++|||+++|++|+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~sH~~~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 165 LAI-------EPNVILMDEPTSALDPISTGKIEELIINLKE-S----------YTIIIVTHNMQQAGRISDRTAFFLNGC 226 (254)
T ss_pred HHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 5999999999999999999999999999964 4 499999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|++.++. .+.++++++++.+
T Consensus 227 i~~~g~~~~~~~~~~~~~~~~~~~~ 251 (254)
T PRK14273 227 IEEESSTDELFFNPKNTKTEEYISG 251 (254)
T ss_pred EEEeCCHHHHHhCCCChHHHHhhcc
Confidence 99999888875 4567788887754
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-53 Score=393.15 Aligned_cols=232 Identities=36% Similarity=0.595 Sum_probs=200.4
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-PVEL-RRKIG 78 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC-hHHh-hcceE
Confidence 478999999988 78999999999999999999999999999999999999999999999999875432 1222 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--ccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+||++.+|+.+||+||+.++.... +....+..+.+.++++.+|+.. +.++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~----- 152 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA----- 152 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999998899999998864322 2334445567889999999985 8899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++.+..+||+|++|++|++++.|++
T Consensus 153 --~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 153 --DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG----------KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred --CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 69999999999999999999999999999765 5 5999999999999999999999999999999988
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
+++.. ..++....++.
T Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 221 DEILRSPANDFVAEFVG 237 (242)
T ss_pred HHHHcCCCChHHHHHhC
Confidence 77643 34456566553
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-53 Score=402.07 Aligned_cols=221 Identities=30% Similarity=0.515 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 80 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE-NEKWV-RSK 80 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC-CHHHH-Hhh
Confidence 4799999999996 56799999999999999999999999999999999999999999999999987542 22222 336
Q ss_pred EEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|||+||++. .++.+||+||+.|+... .+....+..+++.++++.+||.+..+++|.+|||||||||+|||||+.
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~---- 155 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM---- 155 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999973 33457999999986532 234455556778899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..++++|++++++| .|||++|||++++.++||||++|++|++++.|++
T Consensus 156 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 156 ---DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG----------KTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred ---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 699999999999999999999999999998765 5999999999999999999999999999999987
Q ss_pred ccc
Q 018638 328 HEF 330 (352)
Q Consensus 328 ~~~ 330 (352)
+++
T Consensus 223 ~~~ 225 (274)
T PRK13647 223 SLL 225 (274)
T ss_pred HHh
Confidence 654
No 72
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-52 Score=389.79 Aligned_cols=218 Identities=34% Similarity=0.599 Sum_probs=190.3
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-- 163 (352)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999974 579999999999999999999999999999999999999999999999998764322111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+|+|+||++.+|+.+|++||+.+..... ....++..+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11236999999999999899999998865322 23344556678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++..+ |++++|++|+|+
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~sH~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 163 -------NPRLVLADEPTGNLDARNADSIFQLLGELNRLQG----------TAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence 69999999999999999999999999999764 5 5999999999999875 799999999999
Q ss_pred Eeec
Q 018638 323 WQGM 326 (352)
Q Consensus 323 ~~g~ 326 (352)
+.++
T Consensus 225 ~~~~ 228 (233)
T PRK11629 225 AELS 228 (233)
T ss_pred EEec
Confidence 8774
No 73
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-53 Score=393.62 Aligned_cols=224 Identities=25% Similarity=0.482 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHHhCeE
Confidence 699999999999889999999999999999999999999999999999999999999999999875432 2222234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.+..........++..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA------- 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998754222122334455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++||+++.+..+||++++|++|++++.|+++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG----------LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 699999999999999999999999999998766 5999999999999999999999999999999988877
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 225 ~~ 226 (241)
T PRK10895 225 LQ 226 (241)
T ss_pred hc
Confidence 53
No 74
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-52 Score=395.77 Aligned_cols=236 Identities=28% Similarity=0.456 Sum_probs=201.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++........
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4579999999999988899999999999999999999999999999999999985 89999999998643211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+++|+||++.+|+ +|++||+.+..... +.+.++..+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 12336999999999988 89999998865322 234444556688899999983 4578899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++.++|||+++|++|
T Consensus 168 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~----------~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 168 TLAV-------KPKIILFDEPTSALDPISTARIEDLIMNLKK-D----------YTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred HHHc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999864 4 59999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++++.|+++++. .+.++++++++.+
T Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14268 230 ELIEFGQTRQIFHNPREKSTEDYITG 255 (258)
T ss_pred EEEEeCCHHHHhcCCCCHHHHHHhhc
Confidence 999999888875 3456778887754
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.9e-53 Score=388.80 Aligned_cols=211 Identities=42% Similarity=0.634 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EIS 165 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~ 165 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 578999999986 78999999999999999999999999999999999999999999999999875432111 112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+.+++|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||++..++.+.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-- 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN-- 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc--
Confidence 336999999999999899999999865322 23333445678899999999988899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||+|||+.++..+.++|+++++ ++ .|||+||||++++. +||++++|++|++
T Consensus 158 -----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 -----DPKIILADEPTGNLDSETGKEVMELLRELNKEAG----------TTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 6999999999999999999999999999977 35 59999999999987 8999999999974
No 76
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.8e-53 Score=388.55 Aligned_cols=217 Identities=35% Similarity=0.564 Sum_probs=191.5
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD--RKA-ARQSL 77 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--hHH-HhhhE
Confidence 578999999987 7899999999999999999999999999999999999999999999999987532 122 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++.+|++||+.+....+ +....+..+++.++++.++|.+..++.+.+|||||||||+|||||+.
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 150 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG------ 150 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998865332 23344455678899999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.+.|+++++ + .|||++||+++.+.++||++++|++|++++.|++++
T Consensus 151 -~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 151 -GPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G----------RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred -CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 6999999999999999999999999999875 3 499999999999999999999999999999987665
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 219 ~ 219 (220)
T cd03263 219 L 219 (220)
T ss_pred c
Confidence 3
No 77
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.1e-52 Score=391.15 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=195.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC-HHHHHhcCe
Confidence 3689999999999888999999999999999999999999999999999999999999999999865432 222223369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+.+||+||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988643111 0122334567889999999999899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++++..+|||+++|++|+++
T Consensus 160 ~-------~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 160 Q-------DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K----------HSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred c-------CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 7 6999999999999999999999999999975 4 49999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 222 ~~~~~~~~~~ 231 (242)
T TIGR03411 222 AEGSLDQVQA 231 (242)
T ss_pred eeCCHHHHhc
Confidence 9998877753
No 78
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-53 Score=430.42 Aligned_cols=241 Identities=33% Similarity=0.567 Sum_probs=211.8
Q ss_pred CcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 88 GDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..++++++||+|.|.. ..+++||||+|.+||++||||+||||||||.|+|+||++|++|+|.++|.+ .
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence 5688999999999973 368999999999999999999999999999999999999999999999987 2
Q ss_pred CCCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHH
Q 018638 157 GLISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMK 232 (352)
Q Consensus 157 ~~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqr 232 (352)
...... ...++++-+||||| .|.|.+||+++|..++..+......+..+++.++++++||.. +++++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 222211 11234689999998 689999999999998876554445566778999999999975 89999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||+|||||+. +|++|++|||||+||+..+..+.++|++|.++-+ .|+|+||||+..+..+|||
T Consensus 436 QRvaIARALa~-------~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g---------~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 436 QRVAIARALAL-------EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG---------LTYLFISHDLAVVRYIADR 499 (539)
T ss_pred HHHHHHHHHhc-------CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC---------CEEEEEeCCHHHHHhhCce
Confidence 99999999986 6999999999999999999999999999988731 6999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
|+||++|+||+.|++++++ .+.|+|++.++...
T Consensus 500 v~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 500 VAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAV 533 (539)
T ss_pred EEEEECCeEEEeCCHHHHhcCCCChHHHHHHHhc
Confidence 9999999999999888876 46899999998753
No 79
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-52 Score=393.04 Aligned_cols=236 Identities=29% Similarity=0.459 Sum_probs=198.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++........
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 467999999999998889999999999999999999999999999999999974 689999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .||+||+.++.........+...+++.++++.+++.+ ..++.+.+|||||||||+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 12336999999999998 5999999887533221233344567888999999853 468889999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++||||++|++|
T Consensus 163 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 163 ALAV-------EPEVLLMDEPASALDPIATQKIEELIHELKA-R----------YTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEecHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999954 4 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhc
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
++++.|+++++.. +.+..+++++.
T Consensus 225 ~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14242 225 KLIEVGPTEQIFTRPREKQTEDYIT 249 (253)
T ss_pred EEEEeCCHHHHHcCCCchHHHHHhh
Confidence 9999998888653 34566666654
No 80
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.2e-53 Score=385.46 Aligned_cols=213 Identities=40% Similarity=0.653 Sum_probs=186.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999888999999999999999999999999999999999999999999999999864211111112346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|++||+.++.........++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 153 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-------N 153 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998864222223444455678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++|||||||+|||+.++..+.++|++++++| .|||++||+++++.++||++++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEG----------MTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998765 5999999999999999999999999974
No 81
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-53 Score=404.21 Aligned_cols=221 Identities=34% Similarity=0.527 Sum_probs=192.7
Q ss_pred EEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhh
Q 018638 92 IDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEI 164 (352)
Q Consensus 92 l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~ 164 (352)
|+++||+++|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 469999999999999999999999999999999999999999999999998742111 1111
Q ss_pred ccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 165 ~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+.+||||||++ .+|+ .||+||+.|+... .+.+.++..+++.++++.+||. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 233699999997 4665 6999999987532 2345556667789999999996 678999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++.++||||++|++|+
T Consensus 161 ~~-------~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g----------~tviiitHd~~~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 161 AM-------EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG----------LTTVLVTHSMEDAARYADQIVVMHKGT 223 (290)
T ss_pred Hc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 96 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 224 i~~~g~~~~~~ 234 (290)
T PRK13634 224 VFLQGTPREIF 234 (290)
T ss_pred EEEECCHHHHh
Confidence 99999887764
No 82
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.7e-53 Score=406.22 Aligned_cols=219 Identities=33% Similarity=0.555 Sum_probs=196.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ... .+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~--~~~-~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN--PKE-VQRNIG 78 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--hHH-HHhceE
Confidence 48999999999999999999999999999999999999999999999999999999999999987531 222 234699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||.||+.+....+ +.+.++..+++.++++.+||.+..++++.+||||||||++|||||++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~------- 150 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH------- 150 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999998765332 23445556678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|++|||||||+|||+.++..++++|+++++ + .|||++||+++++.++||||++|++|++++.|+++++
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-D----------KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 6999999999999999999999999999864 4 4999999999999999999999999999999988876
Q ss_pred c
Q 018638 331 T 331 (352)
Q Consensus 331 ~ 331 (352)
.
T Consensus 220 ~ 220 (301)
T TIGR03522 220 S 220 (301)
T ss_pred H
Confidence 3
No 83
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.9e-53 Score=385.69 Aligned_cols=212 Identities=40% Similarity=0.632 Sum_probs=186.2
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 58999999999 4678999999999999999999999999999999999999999999999999875432111 112336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+|+.+|+.||+.+..... +.......+++.++++.+++.+..++.+.+|||||||||+|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN----- 154 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-----
Confidence 999999999998899999998865322 23344455678899999999988899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++||+++++..+||++++|++|+
T Consensus 155 --~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 155 --SPPLLLADEPTGNLDPDLSERILDLLKRLNKRG----------TTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 699999999999999999999999999997766 599999999999999999999999985
No 84
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-53 Score=407.13 Aligned_cols=223 Identities=34% Similarity=0.541 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC------
Q 018638 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI------ 159 (352)
Q Consensus 91 ~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~------ 159 (352)
+|+++||+++|++. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 5999999999999999999999999999999999999999999999987652110
Q ss_pred ----------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 018638 160 ----------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVE 220 (352)
Q Consensus 160 ----------------~~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~ 220 (352)
......+.+||||||++ .+|. .||+|||.|+.... +.+.++..+++.++++.+||. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 00111234699999986 4554 79999999876432 355666777899999999996 789
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++.+|||||||||+|||||+. +|++|||||||++||+.++..++++|++++++| .|||+||
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~-------~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivt 222 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAM-------EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG----------KTIILVT 222 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEe
Confidence 99999999999999999999997 699999999999999999999999999998766 5999999
Q ss_pred CCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 301 HQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
||++.+.++||||++|++|++++.|+++++..
T Consensus 223 Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 223 HDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred eCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999998888654
No 85
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-53 Score=403.07 Aligned_cols=223 Identities=32% Similarity=0.515 Sum_probs=194.4
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
||+++||+++|+. +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 259999999999999999999999999999999999999999999999998742111 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+||||||++ .+|+ .||.||+.|+.... +.+..+..+++.++++.+||. .+.++.+.+||||||||++||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 1234699999987 6676 69999999876432 345566677889999999996 57899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||||++|++|+
T Consensus 159 L~~-------~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 159 LAM-------EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG----------QTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 996 699999999999999999999999999998766 599999999999999999999999999
Q ss_pred EEEeeccccccc
Q 018638 321 IVWQGMTHEFTS 332 (352)
Q Consensus 321 iv~~g~~~~~~~ 332 (352)
+++.|+++++..
T Consensus 222 i~~~g~~~~~~~ 233 (288)
T PRK13643 222 IISCGTPSDVFQ 233 (288)
T ss_pred EEEECCHHHHHc
Confidence 999999888653
No 86
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-52 Score=386.45 Aligned_cols=215 Identities=33% Similarity=0.543 Sum_probs=188.4
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccce
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~ 168 (352)
||+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 58999999999 6778999999999999999999999999999999999999999999999999875432111 111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+++.+|++||+.+..... +...++..+++.++++.+++.+..++.+.+||||||||++|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~----- 154 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN----- 154 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc-----
Confidence 999999999888899999998865322 23444555667889999999988999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+||||++|++|+++.
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 155 --KPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----------VTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred --CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 699999999999999999999999999997665 599999999999999999999999999854
No 87
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.7e-53 Score=384.55 Aligned_cols=208 Identities=33% Similarity=0.609 Sum_probs=185.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HH-HHhhEEE
Confidence 5789999999888999999999999999999999999999999999999999999999999876432 11 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+||+||+.++...+. .. .+++.++++.+++.+..++++.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 144 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLG-IR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLG-------N 144 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999988999999988653221 11 3457889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..+.++|+++++++ .|+|++|||++++..+||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQG----------ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998765 59999999999999999999999999998764
No 88
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-52 Score=393.46 Aligned_cols=224 Identities=26% Similarity=0.490 Sum_probs=195.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC-HHHHHhcCe
Confidence 4799999999999889999999999999999999999999999999999999999999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcC------C--------CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENS------K--------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~------~--------~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv 235 (352)
+|+||++.+|+.+||+||+.++..... . ....+..+.+.++++.+|+.+..++++.+|||||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 999999999999999999998532100 0 01112335678899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|++|||||||+|||+.++..+.++|.+++++ | .|||++||+++++.++||+++
T Consensus 163 ~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~ 225 (255)
T PRK11300 163 EIARCMVT-------QPEILMLDEPAAGLNPKETKELDELIAELRNEHN----------VTVLLIEHDMKLVMGISDRIY 225 (255)
T ss_pred HHHHHHhc-------CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHHhCCEEE
Confidence 99999997 69999999999999999999999999999775 5 599999999999999999999
Q ss_pred EEeCCeEEEeecccccc
Q 018638 315 FLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~ 331 (352)
+|++|++++.|+++++.
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999887765
No 89
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-54 Score=380.91 Aligned_cols=237 Identities=34% Similarity=0.536 Sum_probs=212.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC---------
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--------- 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--------- 160 (352)
+.|+++|+.|+||...+|++|||+-++|+++.|||.|||||||+||||+=|..|+.|+|.++|+.+.-...
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45999999999999999999999999999999999999999999999999999999999999987632111
Q ss_pred hh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 161 DE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 161 ~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.+ .+.+.++|+|||+++||.+|||.||+......--+.++.+..++++.+|.++|+.+..+.+|..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 01 1122359999999999999999999977543333467777888899999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+ ++|+++|+|||||+|||+..-++++.|++|+++| .|+++|||.|.+++..+.+|++|++
T Consensus 165 RaLa-------meP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg----------rTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 165 RALA-------MEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG----------RTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred HHHh-------cCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC----------CeEEEEeeehhHHHhhhhheEEeec
Confidence 9997 5899999999999999999999999999999998 5999999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
|.|-++|+|++++ .+..+.+++|++
T Consensus 228 G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 228 GKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred ceecccCChHHHhcCCCCHHHHHHHH
Confidence 9999999999976 577899999987
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-53 Score=384.55 Aligned_cols=211 Identities=30% Similarity=0.562 Sum_probs=187.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .+.+++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QK-LRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HH-HHhheEE
Confidence 57999999999888999999999999 99999999999999999999999999999999998765421 22 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+||+||+.+..... +...++..+.+.++++.+|+.+..++.+.+|||||||||+|||||+. +
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 148 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG-------D 148 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998865332 23334456678899999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|++++++ .|||++|||++++.++|||+++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGED-----------RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999753 49999999999999999999999999998764
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-52 Score=407.59 Aligned_cols=227 Identities=30% Similarity=0.465 Sum_probs=196.4
Q ss_pred CCcceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC--
Q 018638 87 DGDVLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI-- 159 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~-- 159 (352)
.++++|+++||+++|++ +.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++....
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 44578999999999974 35999999999999999999999999999999999999999999999998864320
Q ss_pred ------------ChhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCC
Q 018638 160 ------------SDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLP 224 (352)
Q Consensus 160 ------------~~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~ 224 (352)
......+.+||||||++ .+|+ .||+||+.|+.... +.+.++..+++.++++.+||. .+.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 01111234699999997 5776 59999998875322 245556667788999999996 6889999
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
.+|||||||||+|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++
T Consensus 175 ~~LSgGqkqRvaiAraL~~-------~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TiiivtHd~~ 237 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI-------QPEILIFDEPTAGLDPKGEHEMMQLILDAKANN----------KTVFVITHTME 237 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHH
Confidence 9999999999999999996 699999999999999999999999999997766 59999999999
Q ss_pred HHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 305 TIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
++..+||||++|++|++++.|++++++.
T Consensus 238 ~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 238 HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999998887653
No 92
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-53 Score=385.14 Aligned_cols=232 Identities=30% Similarity=0.500 Sum_probs=203.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+||+++||+..||..++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|+|+|+.... .....+..|
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p-~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP-PHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCC-HHHHHhCCe
Confidence 5799999999999999999999999999999999999999999999999999999999999999998864 444556689
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||||.-.+|+.+||+||+..+.+.... ++.....++++.+.| .|.+..+++..+|||||||.+||||||+.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~----- 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS----- 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc-----
Confidence 9999999999999999999998754332 111122256677777 36889999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||.||-|.-..++.+.|++|++++. .||++|.++...+.+++||.+||++|+|+.+|+.+
T Consensus 154 --~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g---------~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 154 --RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG---------MTILLVEQNARFALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred --CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC---------cEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHH
Confidence 6999999999999999999999999999997742 69999999999999999999999999999999888
Q ss_pred ccccCCcHHHHHHh
Q 018638 329 EFTSSSNPIVQQFA 342 (352)
Q Consensus 329 ~~~~~~~~~~~~~~ 342 (352)
++.. ++.+.+.+
T Consensus 223 eL~~--~~~v~~~y 234 (237)
T COG0410 223 ELLA--DPDVREAY 234 (237)
T ss_pred HHhc--CHHHHHHh
Confidence 8764 33344444
No 93
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-53 Score=399.34 Aligned_cols=233 Identities=35% Similarity=0.541 Sum_probs=201.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--hccceEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--ISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~~~~~ig 170 (352)
.++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ ..+.+++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 57899999999999999999999999999999999999999999999999999999999998754321111 1233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~------- 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV------- 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998865322 23344455678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++.++||++++|++|++++.|++++
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQ----------KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998888
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
+.. +.+++.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~ 262 (269)
T cd03294 248 ILTNPANDYVREFFR 262 (269)
T ss_pred HHhCcCcHHHHHHHh
Confidence 754 44566666664
No 94
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-52 Score=383.26 Aligned_cols=210 Identities=30% Similarity=0.598 Sum_probs=187.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~--~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----A--ARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----H--HHccEEE
Confidence 578999999998889999999999999999999999999999999999999999999999987531 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+....+ +....+..+.+.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~-------~ 146 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH-------D 146 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998764322 23334455678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||+|||+.++..+.++|+++++++ .|||++|||++++.++||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAG----------KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999997665 59999999999999999999999999998654
No 95
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-52 Score=400.29 Aligned_cols=222 Identities=32% Similarity=0.541 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
++|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~-~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE-NVWDI-R 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-H
Confidence 37999999999963 4599999999999999999999999999999999999999999999999987542 22222 3
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.++||+||++ .+++..||+|||.|+... .+.+.++..+++.++++.+||.++.++.+.+|||||||||+|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~-- 157 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLEN-KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM-- 157 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 4699999998 366678999999987532 234566667788999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++.+. .||||++|++|+++..
T Consensus 158 -----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tilivtH~~~~~~-~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 158 -----RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ----------MTVISITHDLDEVA-LSDRVLVMKNGQVEST 221 (279)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 69999999999999999999999999999875 5 59999999999985 7999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 222 g~~~~~~~ 229 (279)
T PRK13650 222 STPRELFS 229 (279)
T ss_pred CCHHHHHc
Confidence 98887643
No 96
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-52 Score=383.37 Aligned_cols=212 Identities=36% Similarity=0.557 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhccceE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~~~i 169 (352)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 67999999999999999999999999999999999999999999999999875432111 1123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+.+|++||+.++.... ....++..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------ 153 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN------ 153 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc------
Confidence 99999999999899999998875332 23344555678899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.+.|++++++| .|||++||+++++..+||++++|++|++
T Consensus 154 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 -SPTILIADEPTGNLDPDTTWEIMNLLKKINKAG----------TTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred -CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 699999999999999999999999999997666 5999999999999999999999999974
No 97
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7.6e-53 Score=405.88 Aligned_cols=212 Identities=32% Similarity=0.567 Sum_probs=189.0
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
|+|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .... +.+|||+||++.+
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKV-RRSIGIVPQYASV 77 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--HHHH-HhhcEEecCCCCC
Confidence 478888899999999999999999999999999999999999999999999999987531 2222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
|+.+||+||+.+....+ +....+..+++.++++.+||.+..++++.+|||||||||+|||||++ +|++||||
T Consensus 78 ~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLD 149 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH-------QPDVLFLD 149 (302)
T ss_pred CCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEe
Confidence 99999999998865332 23444556678899999999999999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|||+|||+.++..++++|++++++| .|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g----------~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEG----------VTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998766 59999999999999999999999999999999887753
No 98
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-52 Score=392.48 Aligned_cols=236 Identities=29% Similarity=0.498 Sum_probs=201.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 56999999999998889999999999999999999999999999999999986 5899999999987421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ .|++||+.++.......+.++..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 2346999999999888 799999988653222234455566788999999984 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.+.|+++++ + .|||++||+++.+..+|||+++|++|+
T Consensus 171 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 171 IAI-------RPEVLLLDEPCSALDPISTGRIEELITELKQ-D----------YTVVIVTHNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred HHC-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999964 4 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+.+++.+
T Consensus 233 i~~~g~~~~~~~~~~~~~~~~~~~~ 257 (260)
T PRK10744 233 LIEFGNTDTIFTKPAKKQTEDYITG 257 (260)
T ss_pred EEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 999998888754 456777777654
No 99
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-52 Score=390.27 Aligned_cols=236 Identities=32% Similarity=0.539 Sum_probs=200.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCC-CChhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGL-ISDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~-~~~~~ 163 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... .....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 479999999999988899999999999999999999999999999999999987 499999999987421 11112
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
.+.+++|+||++.+|+.+||.||+.++...... ...++..+++.++++.+|+. ...++.+.+|||||||||+||
T Consensus 83 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 83 -VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred -HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 233699999999999989999999886532211 13344556678899999984 357889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|||++|||++++..+||||++|++
T Consensus 162 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 162 RALAM-------KPKILLMDEPTANIDPVGTAKIEELLFELKK-E----------YTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C----------CEEEEEECCHHHHHhhCCEEEEEEC
Confidence 99997 6999999999999999999999999999865 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|++.++.. +.++..+.|+.+
T Consensus 224 G~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14267 224 GKLIEVGPTRKVFENPEHELTEKYVTG 250 (253)
T ss_pred CEEEEeCCHHHHHhCCCcHHHHHHhcc
Confidence 99999998888754 335666777655
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-52 Score=389.67 Aligned_cols=222 Identities=25% Similarity=0.414 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....+.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ-TAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC-HHHHHHhCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875432 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAV-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+|+||++.+|+.+||.||+.+.... ....+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS----- 154 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999999989999999885421 12233445567788888 58777888999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||++|||++++.++|||+++|++|++++.|+++
T Consensus 155 --~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (237)
T PRK11614 155 --QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG----------MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGD 222 (237)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999888
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 223 ~~~~ 226 (237)
T PRK11614 223 ALLA 226 (237)
T ss_pred HHhc
Confidence 8753
No 101
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-52 Score=389.41 Aligned_cols=236 Identities=30% Similarity=0.487 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++..........
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4899999999998889999999999999999999999999999999999986 4 6999999999874321111122
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+.+|++||+.++..........+..+++.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 34699999999999989999999876533221233444566888999999853 56788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|+++.++ .|||++||+++++.++|||+++|++|++
T Consensus 164 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-----------~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 164 AV-------KPEVILMDEPASALDPISTLKIEELIEELKEK-----------YTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred hc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-----------CcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 97 69999999999999999999999999999753 4999999999999999999999999999
Q ss_pred EEeecccccc-cCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.|+++++. .+.++.+++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14256 226 VECGETKKIFTTPEKKQTEDYITG 249 (252)
T ss_pred EEeCCHHHHHhCCCcHHHHHHHhh
Confidence 9999888865 4567778888765
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.2e-52 Score=384.71 Aligned_cols=218 Identities=35% Similarity=0.600 Sum_probs=184.4
Q ss_pred eEEEEeEEEEeCCe----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh-hhhc
Q 018638 91 LIDCRNVYKSFGEK----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD-EEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~-~~~~ 165 (352)
+|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 58899999999765 799999999999999999999999999999999999999999999999987543210 1112
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHH-HHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISEL-VKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++ .+++.+||++|+.+...........+..+. +.++++.+++. ...++.+.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 34699999998 567779999999876533221112222222 35789999995 688999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.+.|++++++ | .|||++|||++.+..+||++++|++|+
T Consensus 161 ~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 161 AL-------NPKLLIADEPTSALDVSVQAQILDLLKKLQEELG----------LTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred hc-------CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 97 69999999999999999999999999999875 5 599999999999999999999999999
Q ss_pred EEEee
Q 018638 321 IVWQG 325 (352)
Q Consensus 321 iv~~g 325 (352)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 98654
No 103
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-52 Score=388.80 Aligned_cols=234 Identities=34% Similarity=0.528 Sum_probs=199.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.... ... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-~~~-~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD-VIE-L 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC-HHH-H
Confidence 59999999999988899999999999999999999999999999999999974 7999999999875432 222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
+.+|+|+||++.+++.+||+||+.++...... ....+..+.+.++++.+||.+ ..++.+.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 34699999999888889999999886532211 133445567889999999853 5788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++++..+||++++|++|+
T Consensus 161 l~~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 161 LAF-------QPEVLLADEPTANLDPENTAKIESLFLELKK-D----------MTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 997 6999999999999999999999999999864 4 599999999999999999999999999
Q ss_pred EEEeecccccccC-CcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTSS-SNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~~-~~~~~~~~~~~ 344 (352)
+++.|+++++... .++..+.|+.+
T Consensus 223 i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14247 223 IVEWGPTREVFTNPRHELTEKYVTG 247 (250)
T ss_pred EEEECCHHHHHcCCccHHHHHHhhc
Confidence 9999988887543 34556666543
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-52 Score=397.22 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=193.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999987421111111233699
Q ss_pred EEecCCCC-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++.+ +...|+.+|+.++.... +....+..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~------ 153 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL------ 153 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc------
Confidence 99999753 33468999998864322 23444555678889999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+|||+++|++|++++.|++++
T Consensus 154 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 154 -QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG----------NHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 699999999999999999999999999998666 599999999999999999999999999999998877
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 223 ~~~ 225 (271)
T PRK13638 223 VFA 225 (271)
T ss_pred Hhc
Confidence 643
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-52 Score=398.53 Aligned_cols=224 Identities=29% Similarity=0.540 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5799999999996 577999999999999999999999999999999999999999999999999874211111112346
Q ss_pred EEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+||++ .++ ..||+||+.++.... +.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~--- 158 (283)
T PRK13636 84 VGMVFQDPDNQLF-SASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM--- 158 (283)
T ss_pred EEEEecCcchhhc-cccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 99999997 345 479999998865322 34455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++..+|||+++|++|++++.|
T Consensus 159 ----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 159 ----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG----------LTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred ----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999999999999875 5 59999999999999999999999999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 225 ~~~~~~~ 231 (283)
T PRK13636 225 NPKEVFA 231 (283)
T ss_pred CHHHHhc
Confidence 8877653
No 106
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.9e-52 Score=394.07 Aligned_cols=237 Identities=29% Similarity=0.500 Sum_probs=201.9
Q ss_pred cceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC
Q 018638 89 DVLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (352)
Q Consensus 89 ~~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~ 159 (352)
++||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~- 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG- 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-
Confidence 357999999999962 4699999999999999999999999999999999999999999999999987532
Q ss_pred ChhhhccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 160 SDEEISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 160 ~~~~~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
... ..+.+|+|+||++. +++.+|+.+|+.+....+......+..+++.++++.+|+. ...++++.+|||||||||+
T Consensus 81 ~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 81 DYS-YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred chh-hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 111 12236999999974 6777899999987654332234445556788999999994 6788899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||++||+.++..+.++|.+++++ | .|||++||+++.+..+|||+++
T Consensus 160 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tviivsH~~~~~~~~~d~i~~ 222 (267)
T PRK15112 160 LARALIL-------RPKVIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHLGMMKHISDQVLV 222 (267)
T ss_pred HHHHHHh-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhcCEEEE
Confidence 9999997 69999999999999999999999999999765 5 5999999999999999999999
Q ss_pred EeCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 316 LYEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++|++++.|+++++.. +.+++...++.+
T Consensus 223 l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 223 MHQGEVVERGSTADVLASPLHELTKRLIAG 252 (267)
T ss_pred EECCEEEecCCHHHHhcCCCCHHHHHHHHh
Confidence 99999999998888754 345667777653
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-52 Score=399.08 Aligned_cols=222 Identities=31% Similarity=0.483 Sum_probs=192.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
+|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 469999999999999999999999999999999999999999999999998743211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+|+|+||++ .+| .+||+||+.++.... ....++..+++.++++.+||+ ++.++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 456 479999998865322 234555667789999999997 68899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|++++++| .|||++|||++.+.++|||+++|++|+
T Consensus 160 l~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tvlivsH~~~~~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 160 MAY-------EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG----------HTVILVTHNMDDVAEYADDVLVLEHGK 222 (287)
T ss_pred HHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 699999999999999999999999999997666 599999999999999999999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (287)
T PRK13641 223 LIKHASPKEIF 233 (287)
T ss_pred EEEeCCHHHHh
Confidence 99999877654
No 108
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-52 Score=390.51 Aligned_cols=237 Identities=28% Similarity=0.462 Sum_probs=200.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++........
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 357999999999998889999999999999999999999999999999999997 3 69999999998742111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+. ||+||+.+..........++..+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 123469999999999885 99999988643222123344556678899999985 3568899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++++ + .|+|+|||+++.+.++|||+++|++|
T Consensus 169 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 169 ALAT-------NPDVLLMDEPTSALDPVSTRKIEELILKLKE-K----------YTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 9997 6999999999999999999999999999964 4 49999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++++.|+++++. .+.++.+.+++.+
T Consensus 231 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14274 231 ELVECNDTNKMFSNPDDQRTLDYITG 256 (259)
T ss_pred EEEEECCHHHHhhCCCCHHHHHhhcc
Confidence 999999988875 3456777777754
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=394.59 Aligned_cols=226 Identities=28% Similarity=0.404 Sum_probs=196.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 85 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-SKAF-AR 85 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-HHHH-hh
Confidence 346899999999999889999999999999999999999999999999999999999999999999865322 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.++|+||++.+++.+|+.||+.++...... .......+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~- 164 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ- 164 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc-
Confidence 699999998888889999999875421110 1122335568899999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|.+++++ | .|||++||+++++.++||||++|++|++++
T Consensus 165 ------~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~----------~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 165 ------DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG----------LTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred ------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999
Q ss_pred eeccccccc
Q 018638 324 QGMTHEFTS 332 (352)
Q Consensus 324 ~g~~~~~~~ 332 (352)
.|++.++..
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 998877653
No 110
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.6e-52 Score=386.04 Aligned_cols=220 Identities=30% Similarity=0.539 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... ..+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~--~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAA--LARLG 77 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhh--hhhEE
Confidence 588999999999889999999999999999999999999999999999999999999999999875421 111 22699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+|++||+.+..... +....+..+.+.++++.+|+.+..++.+.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~------- 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH------- 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999998888899999998765322 23344455678899999999988999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.+.|+++++ +| .|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG----------LSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHH
Confidence 6999999999999999999999999999975 35 599999999999975 99999999999999998777
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 653
No 111
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-52 Score=392.56 Aligned_cols=240 Identities=28% Similarity=0.466 Sum_probs=200.3
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCC
Q 018638 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~ 160 (352)
+...++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.....
T Consensus 16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 344568999999999998889999999999999999999999999999999999865 799999999998753211
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRva 236 (352)
.....+.+++|+||++.+|+. |++||+.++.............+.+.++++.+++. +..++.+.+||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 111123369999999999984 99999988653222112233445677889999884 4578899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++..+|||+++|
T Consensus 175 laral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 175 IARTLAM-------KPAVLLLDEPASALDPISNAKIEELITELKE-E----------YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred HHHHHhC-------CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C----------CEEEEEEeCHHHHHHhCCEEEEE
Confidence 9999996 6999999999999999999999999999965 3 49999999999999999999999
Q ss_pred eCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++|++++.|+++++.. +.++.+.+++.+
T Consensus 237 ~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
T PRK14248 237 LNGDLVEYDQTEQIFTSPKQQKTEDYING 265 (268)
T ss_pred ECCEEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 9999999998888653 456777777754
No 112
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.8e-52 Score=383.02 Aligned_cols=213 Identities=36% Similarity=0.627 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 579999999999999999999999999999999999999999999999998754321111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+.+|+|+||++.+|+.+||+||+.+..... .....+..+++.++++.+|+.+..++.+.+|||||||||+|||||+.
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 158 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN- 158 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC-
Confidence 1236999999999998899999998864322 22333445667899999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.++..+.++|++++++ + .|||++|||++++.. ||++++|++|+++
T Consensus 159 ------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 ------QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN----------TSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred ------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 69999999999999999999999999999765 4 599999999999875 7999999999975
No 113
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-52 Score=388.41 Aligned_cols=236 Identities=28% Similarity=0.454 Sum_probs=200.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 679999999999988899999999999999999999999999999999999875 899999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ +|++||+.+...........+..+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2346999999999997 899999988653322112344456678899999874 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++.++ .|||+|||+++++.++|||+++|++|+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 162 IAV-------KPDVILMDEPTSALDPISTLKIEDLMVELKKE-----------YTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred Hhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-----------CeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 997 69999999999999999999999999998763 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+.+++..
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14270 224 LIEFNKTEKIFLEPQKKETEDYISG 248 (251)
T ss_pred EEEeCCHHHHhcCCCChHHHHhhcc
Confidence 999999988754 556778887654
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-52 Score=392.54 Aligned_cols=228 Identities=34% Similarity=0.495 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~-~~~~-~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAEL-ARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCC-HHHh-hhheE
Confidence 689999999999888999999999999999999999999999999999999999999999999865432 2222 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++..... ...++..+++.++++.+|+.+..++.+.+|||||||||+|||||+..+ +.-.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~-~~~~ 157 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW-EPDG 157 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc-ccCC
Confidence 99999988778999999988642211 222334456788999999998899999999999999999999999300 0001
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+.++..+.++|+++. ++| .|||++|||++++..+||+|++|++|++++.|++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG----------LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 599999999999999999999999999997 455 599999999999999999999999999999998777
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 653
No 115
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-52 Score=388.70 Aligned_cols=229 Identities=34% Similarity=0.522 Sum_probs=198.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-~~~~-~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID-VIDL-RRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-hHHh-hhcEE
Confidence 589999999998888999999999999999999999999999999999999999999999999875432 2222 33699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++.+|+ .||+||+.+..... . . ..+++.++++.+++. ++.++.+.+||||||||++|||||+.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~------ 148 (241)
T PRK14250 81 MVFQQPHLFE-GTVKDNIEYGPMLK-G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN------ 148 (241)
T ss_pred EEecCchhch-hhHHHHHhcchhhc-C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999999887 69999998754221 1 1 134577899999996 67899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+.++..+.+.|++++++ | .|||++|||++++..+||||++|++|++++.|++.
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 149 -NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN----------LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 69999999999999999999999999999764 5 59999999999999999999999999999999888
Q ss_pred cccc-CCcHHHHHHhcC
Q 018638 329 EFTS-SSNPIVQQFASG 344 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~~ 344 (352)
++.. +.+++...|+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~ 234 (241)
T PRK14250 218 DFFTNPQNEVTKLFIQG 234 (241)
T ss_pred HHhcCCCcHHHHHHHhc
Confidence 8754 445676776654
No 116
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.2e-52 Score=390.26 Aligned_cols=238 Identities=32% Similarity=0.515 Sum_probs=200.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-----CCCCCChhh-
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-----~~~~~~~~~- 163 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999987 543211111
Q ss_pred -hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 164 -ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 -~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+..++|+||++ .+++.+|+++|+.+.+.........+..+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 1133599999997 46777899999987543222122334556788999999997 4789999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.+.|+++.++ | .|||++|||++++..+||+|++|++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 165 NLVT-------HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG----------LAVVIVTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------cEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9997 69999999999999999999999999998765 5 5999999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++++.|+++++. .+.+++.+.++..
T Consensus 228 g~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK11701 228 GRVVESGLTDQVLDDPQHPYTQLLVSS 254 (258)
T ss_pred CEEEEeCCHHHHhcCCCCHHHHHHHHh
Confidence 9999999888875 3445666666643
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-52 Score=398.65 Aligned_cols=223 Identities=29% Similarity=0.478 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~ 163 (352)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999963 3699999999999999999999999999999999999999999999999987532111 11
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+||||||++ .+|+ .||+||+.|+... .+.+.++..+++.++++.+||. +..++.+.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN-FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1234699999997 5666 5999999987533 2345556677889999999997 68899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|++++++ | .|||+||||++++.++||||++|++|
T Consensus 160 L~~-------~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 160 LAM-------NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN----------KTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 997 69999999999999999999999999999764 5 59999999999999999999999999
Q ss_pred eEEEeeccccccc
Q 018638 320 KIVWQGMTHEFTS 332 (352)
Q Consensus 320 ~iv~~g~~~~~~~ 332 (352)
++++.|+++++..
T Consensus 223 ~i~~~g~~~~~~~ 235 (286)
T PRK13646 223 SIVSQTSPKELFK 235 (286)
T ss_pred EEEEECCHHHHHh
Confidence 9999998877543
No 118
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.1e-53 Score=382.65 Aligned_cols=203 Identities=32% Similarity=0.521 Sum_probs=178.2
Q ss_pred EEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 93 DCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 93 ~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. .+.+|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~-~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KE-RRKSIGY 75 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HH-hhcceEE
Confidence 47899999987 789999999999999999999999999999999999999999999999998632 11 2336999
Q ss_pred EecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++. .+..+|++||+.++..... . ..+++.++++.+|+.++.++++.+||||||||++|||||+.
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELD---A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLS------- 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcC---c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHh-------
Confidence 999974 2335799999988643211 1 12457889999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||++++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQG----------KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 699999999999999999999999999997766 59999999999999999999999999975
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.6e-52 Score=382.57 Aligned_cols=216 Identities=35% Similarity=0.530 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--h
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--E 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~ 163 (352)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 35999999999999999999999999999999999999999999999999875432211 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+++|+||++.+++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12236999999999999899999998764322 23344456678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++|||++++.. ||++++|++|+++
T Consensus 164 -------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 -------RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG----------TTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 69999999999999999999999999999765 5 599999999999865 9999999999997
Q ss_pred Ee
Q 018638 323 WQ 324 (352)
Q Consensus 323 ~~ 324 (352)
+.
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
No 120
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-52 Score=387.16 Aligned_cols=236 Identities=33% Similarity=0.513 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC---CCC--CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL---LAP--DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl---~~p--~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++.........
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999997 455 589999999987532111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ .|++||+.++.........+...+.+.++++.+|+.+ ..++.+.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2336999999999887 6999999886532211123344566788999999853 5688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++. ++ .|||+||||++++.++|||+++|++|+
T Consensus 161 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 161 MAV-------SPSVLLMDEPASALDPISTAKVEELIHELK-KD----------YTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 997 699999999999999999999999999995 44 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++.+++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14245 223 MVEYDDTKKIFTNPEKEATQNYITG 247 (250)
T ss_pred EEEECCHHHHhcCCCChHHHHhhcc
Confidence 999999888753 456677776654
No 121
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-52 Score=389.28 Aligned_cols=236 Identities=32% Similarity=0.503 Sum_probs=199.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 69999999999988899999999999999999999999999999999999974 7999999999864211111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+..++|+||++.+|+.+||+||+.++.........++..+++.++++.+|+. +..++.+.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999998999999988653222123445566788899999984 467889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe----
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY---- 317 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~---- 317 (352)
+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++.++||||++|+
T Consensus 164 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tviivsH~~~~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 164 AV-------EPDVLLMDEPCSALDPISTLAIEDLINELKQ-D----------YTIVIVTHNMQQAARVSDQTAFFNLEAT 225 (258)
T ss_pred hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhCCEEEEEecccC
Confidence 97 6999999999999999999999999999954 4 499999999999999999999997
Q ss_pred --CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|+|++.|+++++.. +.++.+.+++.+
T Consensus 226 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14241 226 GKPGRLVEIDDTEKIFSNPTQKATEDYISG 255 (258)
T ss_pred CCCceEEecCCHHHHHhCcCcHHHHHHHhh
Confidence 899999998888753 345666776654
No 122
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-52 Score=390.03 Aligned_cols=212 Identities=30% Similarity=0.537 Sum_probs=189.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..+++
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-------~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-------GAERG 73 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-------CCcEE
Confidence 58999999999988899999999999999999999999999999999999999999999999986421 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+++.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~------- 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA------- 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998899999998864322 23344455678899999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEeecc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQGMT 327 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++++ +| .|||+||||++++..+||+|++|+ +|++++.++.
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG----------KQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 6999999999999999999999999999865 35 599999999999999999999998 5999998754
No 123
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-52 Score=390.40 Aligned_cols=231 Identities=28% Similarity=0.426 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..... +..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-SSRQL-ARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-CHHHH-hhheE
Confidence 69999999999988999999999999999999999999999999999999999999999999976432 12222 23599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+||++.+++.+|++||+.++.... .........+++.++++.+|+.++.++++.+|||||||||+|||||+.
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~---- 155 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ---- 155 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc----
Confidence 9999999888889999998753111 111123345567889999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++.++| .|||++||+++++.++||++++|++|+++..|++
T Consensus 156 ---~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 156 ---DTPVVLLDEPTTYLDINHQVELMRLMRELNTQG----------KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCH
Confidence 699999999999999999999999999997665 5999999999999999999999999999999988
Q ss_pred cccccCCcHHHHHHh
Q 018638 328 HEFTSSSNPIVQQFA 342 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~ 342 (352)
+++.. .+.+.+++
T Consensus 223 ~~~~~--~~~~~~~~ 235 (255)
T PRK11231 223 EEVMT--PGLLRTVF 235 (255)
T ss_pred HHhcC--HHHHHHHh
Confidence 77653 23445554
No 124
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-52 Score=394.95 Aligned_cols=222 Identities=35% Similarity=0.537 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++......... +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH-Hhhe
Confidence 589999999995 56799999999999999999999999999999999999999999999999987543211222 3369
Q ss_pred EEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||+||++. .+...|++||+.+..... +.+..+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~----- 153 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM----- 153 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc-----
Confidence 99999985 355589999998865322 24555566778899999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++.+. .||||++|++|++++.|+++
T Consensus 154 --~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 154 --EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG----------KTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999985 59999999999999999887
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 221 ~~~~ 224 (274)
T PRK13644 221 NVLS 224 (274)
T ss_pred HHhc
Confidence 7643
No 125
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.6e-52 Score=413.63 Aligned_cols=232 Identities=31% Similarity=0.493 Sum_probs=200.9
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE----eCCCCCChh--hhccce
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDE--EISGLR 168 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~----~~~~~~~~~--~~~~~~ 168 (352)
.++.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+ ++....... ..++.+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 35677888888999999999999999999999999999999999999999999999997 333221111 122346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+||||++.+|+.+||+||+.+++.. .+.++.+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~-~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~----- 181 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM-QGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM----- 181 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 99999999999999999999988643 234555566778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|+||||||||++||+.++..+++.|.+++++ + .|||+||||++++.++||||++|++|++++.|++
T Consensus 182 --~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~----------~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 182 --DADILLMDEPFSALDPLIRTQLQDELLELQAKLN----------KTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTP 249 (382)
T ss_pred --CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 69999999999999999999999999999775 5 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhcC
Q 018638 328 HEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~~ 344 (352)
+++.. +.+.+++.|+.+
T Consensus 250 ~ei~~~p~~~~~~~~~~~ 267 (382)
T TIGR03415 250 EEIVLNPANDYVADFVAH 267 (382)
T ss_pred HHHhhCcchHHHHHHhcc
Confidence 88764 456678877653
No 126
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-51 Score=390.02 Aligned_cols=237 Identities=31% Similarity=0.476 Sum_probs=199.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4579999999999988899999999999999999999999999999999999975 89999999998743111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIA 238 (352)
..+.+|+|+||++.+|+ .||+||+.++...+.. ....+..+++.++++.+|+.+ ..++.+.+|||||||||+||
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 12346999999999988 4999999886532211 123344566888999999953 56788999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++.+..+||++++|++
T Consensus 176 ral~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~----------~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 176 RAIAV-------SPEVILMDEPCSALDPIATAKVEELIDELRQ-N----------YTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred HHHHc-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C----------CeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99997 6999999999999999999999999999865 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|+++++.. +.++.+++++.+
T Consensus 238 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14235 238 GNLVEVGDTEKMFTNPDDPRTQDYITG 264 (267)
T ss_pred CEEEEeCCHHHHHhCCCCHHHHHHhhc
Confidence 99999998888753 445666776654
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-52 Score=393.99 Aligned_cols=223 Identities=35% Similarity=0.613 Sum_probs=193.2
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 589999999996 4679999999999999999999999999999999999999999999999998742111111123469
Q ss_pred EEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+||++ .+++ .||.||+.++.... +...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~---- 154 (275)
T PRK13639 81 GIVFQNPDDQLFA-PTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM---- 154 (275)
T ss_pred EEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc----
Confidence 9999997 3454 79999998764322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+++|++|++++.|++
T Consensus 155 ---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~----------~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 155 ---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG----------ITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 699999999999999999999999999998765 5999999999999999999999999999999988
Q ss_pred ccccc
Q 018638 328 HEFTS 332 (352)
Q Consensus 328 ~~~~~ 332 (352)
+++..
T Consensus 222 ~~~~~ 226 (275)
T PRK13639 222 KEVFS 226 (275)
T ss_pred HHHhc
Confidence 87653
No 128
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7e-52 Score=385.23 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=190.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-PDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC-HHHhhccce
Confidence 57899999999888999999999999999999999999999999999995 799999999999875432 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCC------CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSK------MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARSI 241 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~------~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIArAL 241 (352)
+|+||++.+++.+|++||+.+....... ....+..+++.++++.+|+. ...++.+. +|||||||||+|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 9999999999999999999876432111 12234456788999999997 56788887 5999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|++++++| .|||+||||++.+..+ ||++++|++|+
T Consensus 160 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~vsH~~~~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 160 LL-------EPKLAILDEIDSGLDIDALKIVAEGINRLREPD----------RSFLIITHYQRLLNYIKPDYVHVLLDGR 222 (243)
T ss_pred hc-------CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC----------cEEEEEEecHHHHHhhcCCeEEEEeCCE
Confidence 97 699999999999999999999999999997765 5999999999999998 89999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (243)
T TIGR01978 223 IVKSGDVELAK 233 (243)
T ss_pred EEEecCHHHhc
Confidence 99999776543
No 129
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4e-52 Score=379.44 Aligned_cols=208 Identities=40% Similarity=0.676 Sum_probs=181.0
Q ss_pred EEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 93 DCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 78 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS-LKE-LRRKVG 78 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC-HHH-HHhhce
Confidence 47899999987 78999999999999999999999999999999999999999999999999875421 122 233699
Q ss_pred EEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+||++. .++.+|++||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~------ 151 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM------ 151 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc------
Confidence 9999985 355689999998764322 23334445668889999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||+|||+.++..+.+.|++++++| .|||++|||++++..+||+|++|++|+
T Consensus 152 -~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 152 -DPDILLLDEPTAGLDPAGRRELLELLKKLKAEG----------KTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 699999999999999999999999999998766 599999999999999999999999985
No 130
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-51 Score=385.52 Aligned_cols=235 Identities=26% Similarity=0.411 Sum_probs=196.9
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CC---CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--AP---DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p---~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999995 46 599999999987432111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ +||+||+.++.............+++.++++.+++. +..++.+.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 2336999999999987 799999988653222112333456678889999874 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++..+|||+++|++|+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 163 LAT-------SPKIILLDEPTSALDPISAGKIEETLLGLKD-D----------YTMLLVTRSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred Hhc-------CCCEEEEcCCccccCHHHHHHHHHHHHHHhh-C----------CeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999865 3 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+++.|+++++.. +.++.+.+++.
T Consensus 225 i~~~g~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14239 225 LIEYNDTKQMFMNPKHKETEDYIS 248 (252)
T ss_pred EEEeCCHHHHHhCCCCHHHHHHHh
Confidence 999998888754 44566666654
No 131
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6e-52 Score=383.33 Aligned_cols=217 Identities=31% Similarity=0.498 Sum_probs=189.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP-HERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH-HHHHHhCeEE
Confidence 578999999998899999999999999999999999999999999999999999999999998754322 2212336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+||++.+|+.+|+.||+.++..... .. ..+.+.++++.++ +....++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~-~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------- 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP-RR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT------- 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC-cc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999998999999988653221 11 1233567788886 5778899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|.+++++ + .|||++||+++++..+||++++|++|++++.|++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG----------MAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCC----------cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999874 4 599999999999999999999999999999998777
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 132
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=392.80 Aligned_cols=221 Identities=35% Similarity=0.588 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++... ..... +.+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~-~~~ 79 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREV-RKF 79 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHH-Hhh
Confidence 3699999999996 45699999999999999999999999999999999999999999999999987532 12222 336
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|+||++. ++ ..||.||+.++... .....++..+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 80 i~~v~q~~~~~~~-~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~--- 154 (277)
T PRK13652 80 VGLVFQNPDDQIF-SPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM--- 154 (277)
T ss_pred eEEEecCcccccc-cccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 999999973 45 57999999876532 234555566778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++.++|||+++|++|++++.|
T Consensus 155 ----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 155 ----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG----------MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 69999999999999999999999999999875 5 59999999999999999999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 221 ~~~~~~ 226 (277)
T PRK13652 221 TVEEIF 226 (277)
T ss_pred CHHHHh
Confidence 887764
No 133
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-51 Score=384.60 Aligned_cols=233 Identities=28% Similarity=0.460 Sum_probs=198.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+++++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.... ... .+.
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~-~~~-~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD-VVA-LRK 79 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC-HHH-Hhh
Confidence 5899999999998889999999999999999999999999999999999984 79999999999875432 112 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHHh
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+|+||++.+|+ .|++||+.++....... ......+++.++++.+++. +..++.+.+|||||||||+|||||+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6999999999997 69999998864322111 2234455678899999995 4568889999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++.+ + .|+|+|||+++++.++|||+++|++|+++
T Consensus 159 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 159 I-------KPKLLLLDEPTSALDPISSGVIEELLKELSH-N----------LSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 7 6999999999999999999999999999864 5 59999999999999999999999999999
Q ss_pred Eeeccccccc-CCcHHHHHHhcC
Q 018638 323 WQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 323 ~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+.|++.++.. +.++.+++|+.+
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~ 243 (246)
T PRK14269 221 EFGESKEFFENPKQEKTKAYLSG 243 (246)
T ss_pred EECCHHHHHhCCCcHHHHHHhhh
Confidence 9998888754 345667777654
No 134
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-51 Score=384.12 Aligned_cols=235 Identities=29% Similarity=0.493 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 48999999999988899999999999999999999999999999999999863 7999999999875311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+|+|+||++.+|+ +|++||+.+..........++..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346999999999888 899999988653222122344566788889999874 456889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+..+|||+++|++|++
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 162 AV-------EPEVLLMDEPTSALDPISTLKIEELIQELKK-D----------YTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 97 6999999999999999999999999999854 4 5999999999999999999999999999
Q ss_pred EEeecccccc-cCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++.|+++++. .+.++.+.+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14240 224 VEFGDTVDLFTNPKDKRTEDYITG 247 (250)
T ss_pred EEeCCHHHHHhCCCChHHHHhhcc
Confidence 9999888865 3456777777654
No 135
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=393.76 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~-~~ 81 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDV-RR 81 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHH-hh
Confidence 57999999999974 5699999999999999999999999999999999999999999999999987543 22222 34
Q ss_pred eEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 168 RIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 168 ~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|||+||++. +++..||.||+.++.... +...++..+++.++++.+||+++.++++.+|||||||||+|||||+.
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~--- 157 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL--- 157 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc---
Confidence 6999999983 566689999998865332 23455556778999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++.+.. |||+++|++|++++.|
T Consensus 158 ----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~----------~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 158 ----QPDIIILDEATSMLDPRGRREVLETVRQLKEQKG----------ITVLSITHDLDEAAQ-ADRVIVMNKGEILEEG 222 (279)
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC----------CEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 69999999999999999999999999999875 5 599999999999975 9999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 223 ~~~~~~ 228 (279)
T PRK13635 223 TPEEIF 228 (279)
T ss_pred CHHHHh
Confidence 877654
No 136
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-51 Score=388.76 Aligned_cols=234 Identities=31% Similarity=0.504 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCC---Chhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~---~~~~ 163 (352)
++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|+|+|+++.... ....
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 5799999999999889999999999999999999999999999999999999987 499999999864321 0111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcC-------CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-------KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
..+.+++|+||++.+|+.+||+||+.++..... ....++..+++.++++.+|+.+..++.+.+|||||||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 123369999999999998999999987542100 0112334567889999999998899999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++..+|||+++
T Consensus 163 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g----------~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 163 IARALMQ-------QAKVILADEPIASLDPESARIVMDTLRDINQNDG----------ITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred HHHHHhc-------CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEE
Confidence 9999996 69999999999999999999999999999764 5 5999999999999999999999
Q ss_pred EeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++|++++.|++.++. .+.+.+++.
T Consensus 226 l~~g~i~~~g~~~~~~---~~~~~~~~~ 250 (262)
T PRK09984 226 LRQGHVFYDGSSQQFD---NERFDHLYR 250 (262)
T ss_pred EECCEEEEeCCHHHhc---cHHHHHHHh
Confidence 9999999999887762 234444443
No 137
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.9e-51 Score=388.53 Aligned_cols=238 Identities=29% Similarity=0.453 Sum_probs=204.4
Q ss_pred eEEEEeEEEEeC---------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 91 LIDCRNVYKSFG---------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 91 ~l~~~nls~~y~---------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+|+++||+++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++......
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 699999999997 47899999999999999999999999999999999999999999999999987543211
Q ss_pred h-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 162 E-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
. ...+.+++|+||++ .+++..|+.+|+.+...........+..+++.++++.+|+. ...++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1 11233699999997 46677899999977543222233444455788999999997 58899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+. +|++|||||||++||+.++..+.++|++++++ + .|+|++||+++.+..+||++++|
T Consensus 163 aral~~-------~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 163 ARALAV-------EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG----------TACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred HHHHhc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcC----------cEEEEEECCHHHHHHhCCEEEEE
Confidence 999997 69999999999999999999999999999765 4 59999999999999999999999
Q ss_pred eCCeEEEeecccccccCCcHHHHHHhcCC
Q 018638 317 YEGKIVWQGMTHEFTSSSNPIVQQFASGS 345 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 345 (352)
++|++++.|+++++....++++..++...
T Consensus 226 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 254 (268)
T PRK10419 226 DNGQIVETQPVGDKLTFSSPAGRVLQNAV 254 (268)
T ss_pred ECCEEeeeCChhhccCCCCHHHHHHHHhc
Confidence 99999999999888777788888777543
No 138
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-52 Score=406.69 Aligned_cols=225 Identities=29% Similarity=0.449 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
||++ ||+|+|+++. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...... ....+++
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5888 9999998764 3 89999999999999999999999999999999999999999999986431100 0111336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|+||++.+|+.+||+||+.++.. ....+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~----- 145 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT----- 145 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc-----
Confidence 9999999999999999999988642 1123567889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+++.|+++.++ | .|+|+||||++++..+|||+++|++|++++.|++
T Consensus 146 --~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 146 --APELLLMDEPLASLDLPRKRELLPYLERLAREIN----------IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred --CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCH
Confidence 69999999999999999999999999999875 5 5999999999999999999999999999999999
Q ss_pred cccccC-CcHHHHHHh
Q 018638 328 HEFTSS-SNPIVQQFA 342 (352)
Q Consensus 328 ~~~~~~-~~~~~~~~~ 342 (352)
+++... .+..+..|+
T Consensus 214 ~~i~~~p~~~~~~~~~ 229 (352)
T PRK11144 214 EEVWASSAMRPWLPKE 229 (352)
T ss_pred HHHHhCcchhhhhccc
Confidence 887643 334444443
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-51 Score=376.63 Aligned_cols=210 Identities=39% Similarity=0.625 Sum_probs=183.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++. .++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-P---ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-H---hHccEEE
Confidence 47899999998764 3999999999999999999999999999999999999999999999875431 1 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|++||+.++....... .++..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~-------~ 146 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR-------D 146 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 999999999899999998764311111 22345568899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..++++|++++++ + .|||++|||++++..+|||+++|++|++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETK----------MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999764 5 59999999999999999999999999998654
No 140
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=389.52 Aligned_cols=209 Identities=36% Similarity=0.541 Sum_probs=187.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~ 82 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE-------ARED 82 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH-------hhCc
Confidence 356999999999998889999999999999999999999999999999999999999999999986421 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||++.+|+.+||+||+.++.. . ...+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~--~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~----- 150 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G--QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH----- 150 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c--hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 9999999999988999999987531 1 123457889999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..+.++|+++.++ + .|||+||||++++..+||+|++|++|+++.+++.
T Consensus 151 --~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 151 --RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG----------FTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 69999999999999999999999999998654 4 5999999999999999999999999999998865
Q ss_pred c
Q 018638 328 H 328 (352)
Q Consensus 328 ~ 328 (352)
+
T Consensus 219 ~ 219 (257)
T PRK11247 219 D 219 (257)
T ss_pred c
Confidence 4
No 141
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-51 Score=383.45 Aligned_cols=236 Identities=30% Similarity=0.500 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46999999999998899999999999999999999999999999999999997 4899999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+..++|++|++.+|+ .||+||+.++.........+...+++.++++.+++. ...++.+.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 2336999999999887 799999987643222122333456678899999984 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.+.|+++.+ + .|||+|||+++++.++||||++|++|+
T Consensus 162 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 162 LAV-------RPKVVLLDEPTSALDPISSSEIEETLMELKH-Q----------YTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred Hhc-------CCCEEEecCCCccCCHHHHHHHHHHHHHHHc-C----------CeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 997 6999999999999999999999999999854 3 499999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|+++++. .+.+...+.++..
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14251 224 LIEAGPTEEMFIAPKKQITSDYLNG 248 (251)
T ss_pred EEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 99999888865 3456666666653
No 142
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-51 Score=383.24 Aligned_cols=236 Identities=28% Similarity=0.430 Sum_probs=199.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
++|+++||+++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5799999999999888999999999999999999999999999999999999997 69999999986431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+. |++||+.+..........+...+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 23469999999999984 99999998653221112233445677788888874 45788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++. ++ .|||++||+++++.++||++++|++|+
T Consensus 162 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~----------~tilivsh~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 162 LAI-------EPEVILMDEPCSALDPVSTMRIEELMQELK-QN----------YTIAIVTHNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC----------CEEEEEeCCHHHHHhhCCEEEEEeCCe
Confidence 997 699999999999999999999999999985 44 599999999999999999999999999
Q ss_pred EEEeecccccc-cCCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+++.|+++++. .+.++.+.+++.+
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14249 224 LVEYGRTGEIFSRPRDKRTEDYITG 248 (251)
T ss_pred EEEeCCHHHHHhCCCChHHHHHHhc
Confidence 99999888865 3556777777765
No 143
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-51 Score=382.90 Aligned_cols=237 Identities=29% Similarity=0.498 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++.........
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4799999999999889999999999999999999999999999999999999874 89999999987531111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+.+|+.||+.+..........++..+.+.++++.+++. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 23469999999999998999999987653222112334455667777777753 45688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.+.|+++++ + .|||++||+++.+..+|||+++|++|+
T Consensus 163 l~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 163 LAV-------EPEILLMDEPTSALDPASTARIEDLMTDLKK-V----------TTIIIVTHNMHQAARVSDTTSFFLVGD 224 (252)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 997 6999999999999999999999999999864 4 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|+++++.. +.++....++.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14272 225 LVEHGPTDQLFTNPRDERTEAYVSG 249 (252)
T ss_pred EEEeCCHHHHHhCcCcHHHHHHHhc
Confidence 999998888753 445667777755
No 144
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-51 Score=389.98 Aligned_cols=225 Identities=29% Similarity=0.442 Sum_probs=195.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYA-SKEV-ARR 82 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCC-HHHH-hhh
Confidence 35799999999999888999999999999999999999999999999999999999999999999875422 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
|+|+||++.+++.+|++||+.++...... ...+...+++.++++.+||.+..++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~-- 160 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ-- 160 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc--
Confidence 99999999998889999999875321110 1112334567889999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|.++.++ | .|||++|||++++.++|||+++|++|++++.
T Consensus 161 -----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~----------~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 161 -----ETAIMLLDEPTTWLDISHQIDLLELLSELNREKG----------YTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred -----CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999764 5 5999999999999999999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|++.++..
T Consensus 226 g~~~~~~~ 233 (265)
T PRK10253 226 GAPKEIVT 233 (265)
T ss_pred CCHHHHhh
Confidence 98877653
No 145
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.9e-52 Score=380.34 Aligned_cols=208 Identities=36% Similarity=0.595 Sum_probs=179.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . .+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~--~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----K--ERKRIGYV 73 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----H--HHhheEEe
Confidence 3689999999888999999999999999999999999999999999999999999999998642 1 12369999
Q ss_pred ecCCCCC--CCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 173 FQSAALF--DSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 173 ~Q~~~l~--~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||++.++ ..+||+||+.++...... ...+...+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~---- 149 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ---- 149 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc----
Confidence 9998763 237999999886432111 1123345678899999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..+.+.|++++++| .|||++|||++++.++||++++|++| +++.|
T Consensus 150 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 150 ---DPDLLLLDEPFAGVDPKTQEDIYELLRELRREG----------MTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 699999999999999999999999999997665 59999999999999999999999886 55543
No 146
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-51 Score=386.88 Aligned_cols=237 Identities=26% Similarity=0.459 Sum_probs=199.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+||||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++........
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 457999999999998899999999999999999999999999999999999996 589999999998742111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+..|+|+||++.+|+ .||+||+.++..........+..+++.++++.+++. +..++++.+||||||||++|||
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 12346999999999887 699999988653222123344556788899999984 4678899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++||+++++..+|||+++|++|
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 177 AIAV-------KPDILLMDEPASALDPISTMQLEETMFELKK-N----------YTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHHhcCEEEEEECC
Confidence 9997 6999999999999999999999999999954 4 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.+..+.+++.+
T Consensus 239 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (267)
T PRK14237 239 DLIEYDKTRNIFTNPKLQSTNDYVSG 264 (267)
T ss_pred EEEEeCCHHHHhcCCCcHHHHHhhhh
Confidence 9999999888754 344556666544
No 147
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-51 Score=430.85 Aligned_cols=239 Identities=25% Similarity=0.434 Sum_probs=206.7
Q ss_pred cceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC
Q 018638 89 DVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG 157 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~ 157 (352)
.++|+++||++.|+. +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999961 469999999999999999999999999999999999999999999999998754
Q ss_pred CCChh-hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHH
Q 018638 158 LISDE-EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKK 233 (352)
Q Consensus 158 ~~~~~-~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQ 233 (352)
..... ...+.+|+||||++ .+++.+||.+|+.+++..+.....++..+++.++|+.+||. +..+++|++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 32111 11234699999997 58889999999988653322123444556788999999996 6789999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|||
T Consensus 471 Rv~iAraL~~-------~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g----------~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 471 RICIARALAL-------NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG----------IAYLFISHDMAVVERISHR 533 (623)
T ss_pred HHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCE
Confidence 9999999996 69999999999999999999999999999775 5 5999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++|++|+|++.|+++++. .+.+++++.++..
T Consensus 534 i~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 534 VAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9999999999999998875 4578898888764
No 148
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-51 Score=390.70 Aligned_cols=223 Identities=33% Similarity=0.521 Sum_probs=191.5
Q ss_pred eEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhh
Q 018638 91 LIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~ 163 (352)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998753211 111
Q ss_pred hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArA 240 (352)
..+.+|+|+||++ .+|+ .||+||+.++.... +...++..+++.++++.+||. ...++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1233699999997 4665 69999998865322 234445566788899999997 57899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+||++++|++|+
T Consensus 160 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 160 LAM-------EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG----------MTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 997 699999999999999999999999999997665 599999999999999999999999999
Q ss_pred EEEeeccccccc
Q 018638 321 IVWQGMTHEFTS 332 (352)
Q Consensus 321 iv~~g~~~~~~~ 332 (352)
+++.|+++++..
T Consensus 223 i~~~g~~~~~~~ 234 (280)
T PRK13649 223 LVLSGKPKDIFQ 234 (280)
T ss_pred EEEeCCHHHHhc
Confidence 999998877543
No 149
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-51 Score=380.35 Aligned_cols=218 Identities=32% Similarity=0.557 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|++.. .+|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~---~~~~i~ 74 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-P---SRRPVS 74 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-h---hhccEE
Confidence 589999999998654 4999999999999999999999999999999999999999999999865321 1 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+||++.+|+.+|+.||+.++....... .+...+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~------- 146 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVR------- 146 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhc-------
Confidence 9999999999899999998754211111 22335668899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|+++.++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ----------LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999764 5 599999999999999999999999999999998877
Q ss_pred ccc
Q 018638 330 FTS 332 (352)
Q Consensus 330 ~~~ 332 (352)
+..
T Consensus 217 ~~~ 219 (232)
T PRK10771 217 LLS 219 (232)
T ss_pred HHh
Confidence 764
No 150
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.9e-51 Score=383.31 Aligned_cols=237 Identities=32% Similarity=0.496 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-----CCCCCChhh-
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-----RAGLISDEE- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-----~~~~~~~~~- 163 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +........
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999999976 433211111
Q ss_pred -hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 164 -ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 -~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|++|++. +++.+|+.+|+.+...........+..+.+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 11235999999974 4556799999976432111111223446678999999997 5889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.++|+++.++ | .|||+|||+++++..+||++++|++
T Consensus 162 al~~-------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~vsH~~~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 162 NLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG----------LAVIIVTHDLGVARLLAQRLLVMQQ 224 (253)
T ss_pred HHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9997 69999999999999999999999999998764 5 5999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|+++++.. +.+++++.|+.
T Consensus 225 G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 225 GRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred CEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 99999998887653 44667777664
No 151
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-51 Score=381.60 Aligned_cols=234 Identities=30% Similarity=0.537 Sum_probs=196.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 69999999999988899999999999999999999999999999999999984 8999999999864311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++.+|+ .|++||+.+..........+...+.+.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 346999999999888 8999999886533221223344566788899999853 47889999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+..+||++++|++|++
T Consensus 162 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 162 AV-------EPEVILLDEPTSALDPIATQRIEKLLEELSE-N----------YTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred hC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C----------cEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 97 6999999999999999999999999999864 4 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhc
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
++.|+++++.. +.++....++.
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14262 224 IEYGPTREIVERPKNKLTEEYLT 246 (250)
T ss_pred EEecCHHHHHhCCCChHHHHHhc
Confidence 99998888754 33455666553
No 152
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-51 Score=381.88 Aligned_cols=237 Identities=29% Similarity=0.495 Sum_probs=199.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++........
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 357999999999998899999999999999999999999999999999999976 3 48999999998754211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .||+||+.+.............++.+.++++.+++. ...++.+.+||||||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 12346999999999998 599999998653322122334456678889998874 3468899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++||+++++.++||++++|++|
T Consensus 163 al~~-------~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 163 TLAV-------NPEVILMDEPCSALDPIATAKIEDLIEDLKK-E----------YTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-C----------ceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 9997 5999999999999999999999999999875 3 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++..+.++.+
T Consensus 225 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK14261 225 KLIEFDKTTQIFENPHEELTENYITG 250 (253)
T ss_pred EEEEcCCHHHHHhCCCcHHHHHHhcc
Confidence 9999998888653 445677777764
No 153
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.6e-52 Score=437.86 Aligned_cols=281 Identities=30% Similarity=0.485 Sum_probs=235.2
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCC-CCCCCCCCCccccccccCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDG-FPATKFNDSSKSENVNTLF 82 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (352)
++....+.+-..+..+.+|+..+.+.+ .-....+.+.+|+..+...|+.+..... .+-
T Consensus 407 lTlG~LiAf~~l~~~f~~pi~~L~~~~-----~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~---------------- 465 (709)
T COG2274 407 LTLGQLVAFNMLAGYFISPITRLSQLW-----TDFQQAKVALERLGDILDTPPEQEGDKTLIHL---------------- 465 (709)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccccccccc----------------
Confidence 445677777788888899999998888 8888999999999999999975554431 110
Q ss_pred CCCCCCcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 83 EPEDDGDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 83 ~~~~~~~~~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
+.-.++ |+++||+|+|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.....
T Consensus 466 -~~~~g~--I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 466 -PKLQGE--IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred -cccCce--EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 222333 9999999999754 69999999999999999999999999999999999999999999999999876532
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCCh
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSG 229 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSG 229 (352)
... |++||||+|++.+|. .|++|||+++. ...+ .+++.++++..|.+++..+.| ..|||
T Consensus 543 -~~l-R~~ig~V~Q~~~Lf~-gSI~eNi~l~~---p~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 543 -ASL-RRQVGYVLQDPFLFS-GSIRENIALGN---PEAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred -HHH-HhheeEEcccchhhc-CcHHHHHhcCC---CCCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 222 447999999999997 59999999853 1122 244677888888888777665 68999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||++|||||++ +|+|||||||||+||+.+++.+.+.|.++.+. +|+|+|||+++.+..
T Consensus 613 GQrQrlalARaLl~-------~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-----------~T~I~IaHRl~ti~~- 673 (709)
T COG2274 613 GQRQRLALARALLS-------KPKILLLDEATSALDPETEAIILQNLLQILQG-----------RTVIIIAHRLSTIRS- 673 (709)
T ss_pred HHHHHHHHHHHhcc-------CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-----------CeEEEEEccchHhhh-
Confidence 99999999999997 59999999999999999999999999998654 499999999999986
Q ss_pred cCEEEEEeCCeEEEeecccccccCCcHH
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~~~~~~~ 337 (352)
||||+||++|+|+++|+.+|+......+
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred ccEEEEccCCceeccCCHHHHHHhcChH
Confidence 6999999999999999888877654333
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-51 Score=389.00 Aligned_cols=223 Identities=34% Similarity=0.589 Sum_probs=193.5
Q ss_pred cceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 82 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE-NLKEI-R 82 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC-CHHHH-h
Confidence 36899999999995 46799999999999999999999999999999999999999999999999987532 11222 3
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+++|+||++. .|+.+||+||+.++... .....++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL-- 159 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 56678999999886532 223445556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.++..++++|+++++++. .|||++||+++.+. .||++++|++|++++.|
T Consensus 160 -----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~---------~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 160 -----NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRK---------KTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC---------cEEEEEEechhHHh-hCCEEEEEECCEEEEec
Confidence 6999999999999999999999999999976531 59999999999986 79999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 225 ~~~~~~ 230 (271)
T PRK13632 225 KPKEIL 230 (271)
T ss_pred CHHHHh
Confidence 877754
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-51 Score=385.90 Aligned_cols=222 Identities=32% Similarity=0.447 Sum_probs=193.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+++|
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS-RRAR-ARRVAL 79 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-HHHH-hhheEE
Confidence 68999999999999999999999999999999999999999999999999999999999999875432 2222 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|++.+++.+||+||+.++.... ......+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~----- 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ----- 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999998777899999998753211 011122334567889999999989999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|+++||||||+|||+.++..+.++|++++++| .|||++|||++.+..+||||++|++|++++.|+.+
T Consensus 155 --~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 155 --EPKLLLLDEPTNHLDVRAQLETLALVRELAATG----------VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred --CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 699999999999999999999999999998765 59999999999999999999999999999999887
Q ss_pred cccc
Q 018638 329 EFTS 332 (352)
Q Consensus 329 ~~~~ 332 (352)
++..
T Consensus 223 ~~~~ 226 (256)
T TIGR03873 223 EVLT 226 (256)
T ss_pred HhhC
Confidence 7653
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=420.31 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=197.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+||+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHHHhCCE
Confidence 4799999999999888999999999999999999999999999999999999999999999999875321 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|+||++.+++.+||+||+.++.... ...+..+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~--- 158 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF--- 158 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999999999999999998864321 112334445678899999999988999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++..+||||++|++|++++.|+
T Consensus 159 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 159 ----ESKVIIMDEPTDALTDTETESLFRVIRELKSQG----------RGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred ----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 699999999999999999999999999997665 599999999999999999999999999999998
Q ss_pred ccccc
Q 018638 327 THEFT 331 (352)
Q Consensus 327 ~~~~~ 331 (352)
++++.
T Consensus 225 ~~~~~ 229 (501)
T PRK10762 225 VADLT 229 (501)
T ss_pred cCcCC
Confidence 77753
No 157
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-51 Score=391.00 Aligned_cols=223 Identities=33% Similarity=0.533 Sum_probs=194.5
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|+++|++++|++ +.+|++|||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++... ....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~-~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK-TVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-CHHH
Confidence 457999999999964 469999999999999999999999999999999999999998 8999999987532 1111
Q ss_pred hccceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 164 ISGLRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
.+.+|||+||++. +++..||+||+.|.... .+...++..+++.++++.+||.++.++++.+|||||||||+|||||+
T Consensus 82 -~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 82 -IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred -HHhheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 2346999999984 56678999999876432 23455566677899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||+|||+.++..+.++|++++++ | .|||++||+++++. .|||+++|++|++
T Consensus 160 ~-------~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tvli~tH~~~~~~-~~d~i~~l~~G~i 221 (282)
T PRK13640 160 V-------EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN----------LTVISITHDIDEAN-MADQVLVLDDGKL 221 (282)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 7 69999999999999999999999999999765 5 59999999999985 7999999999999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+++++..
T Consensus 222 ~~~g~~~~~~~ 232 (282)
T PRK13640 222 LAQGSPVEIFS 232 (282)
T ss_pred EEeCCHHHHhc
Confidence 99998877643
No 158
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-51 Score=387.22 Aligned_cols=234 Identities=32% Similarity=0.496 Sum_probs=197.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCC-CChh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGL-ISDE 162 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~-~~~~ 162 (352)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... ....
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 468999999999998889999999999999999999999999999999999987 6999999999986421 1112
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL----KGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL----~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.. +.+|+|+||++.+|+ .||+||+.+..... ... ....+++.++++.+++ .+..++++.+|||||||||+||
T Consensus 91 ~~-~~~i~~v~q~~~l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 91 EV-RRRIGMVFQQPNPFP-KSIYENIAFGARIN-GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred HH-hhceEEEccCCccch-hhHHHHHhhhhhhc-CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 22 336999999999998 59999998865322 222 2334567778888876 3467889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++|||++++..+|||+++|++
T Consensus 167 ral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAI-------EPEVILMDEPCSALDPISTLKIEETMHELKK-N----------FTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99997 6999999999999999999999999999854 4 4999999999999999999999996
Q ss_pred -----------CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 -----------GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 -----------G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|++.++.. +.++....++.+
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYISG 266 (269)
T ss_pred cccccccccccceEEEeCCHHHHHhCcCChHHHHHHhc
Confidence 67999999988754 456777777754
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-51 Score=403.29 Aligned_cols=215 Identities=32% Similarity=0.507 Sum_probs=188.4
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhhccceEEEEe
Q 018638 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~~~~~ig~v~ 173 (352)
||+|+|+++. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .....+++|+|+|
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 8999998876 4 9999999999999999999999999999999999999999999998743211 0011233699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|++.+|+.+||+||+.|++... ...+..+++.++++.+||.++.++++.+|||||||||+|||||+. +|+
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~-------~p~ 151 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS-------SPR 151 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc-------CCC
Confidence 9999999999999999875321 223345568899999999999999999999999999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
+|||||||++||+.++..+.++|++++++ | .|+|+||||++++..+||++++|++|++++.|+++++..
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g----------~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFG----------IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999999999999999875 5 599999999999999999999999999999998888654
No 160
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-51 Score=386.48 Aligned_cols=237 Identities=29% Similarity=0.475 Sum_probs=197.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+.++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3568999999999998889999999999999999999999999999999999997 69999999999874211111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC----CCcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG----LKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g----L~~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+++|+||++.+|+ .|++||+.++.............+.+.++++.++ +.+..++++.+||||||||++||
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 112336999999999887 5999999886532221122333455677787775 44567889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++..+|||+++|++
T Consensus 180 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiivsH~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 180 RCLAI-------EPDVILMDEPTSALDPISTLKVEELVQELKK-D----------YSIIIVTHNMQQAARISDKTAFFLN 241 (271)
T ss_pred HHHHc-------CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C----------CEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999965 4 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|++.++.. +.++....++.
T Consensus 242 G~i~~~g~~~~~~~~~~~~~~~~~~~ 267 (271)
T PRK14238 242 GYVNEYDDTDKIFSNPSDKRTEDYIT 267 (271)
T ss_pred CEEEEeCCHHHHHcCCCCHHHHHHHh
Confidence 99999998888754 34566666664
No 161
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-51 Score=380.28 Aligned_cols=235 Identities=30% Similarity=0.503 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~-~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD-L 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH-H
Confidence 58999999999988899999999999999999999999999999999999986 59999999998642111122 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+..++|+||++.+|+ .||.||+.+..........+...+++.++++.+++. +..++.+.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 336999999999997 799999987643221112334456677889999874 456788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.++|++++++ .|||++||+++++..+|||+++|++|++
T Consensus 161 ~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 161 AM-------EPDVILMDEPTSALDPIATHKIEELMEELKKN-----------YTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred Hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 97 69999999999999999999999999999653 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcCC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
++.|+++++.. +.++.+.+++.+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (249)
T PRK14253 223 VEHDDTQVIFSNPKDDRTQGYVNGD 247 (249)
T ss_pred EEeCCHHHHHcCCCChHHHHHhhcc
Confidence 99998877653 4566777776543
No 162
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=384.69 Aligned_cols=239 Identities=31% Similarity=0.480 Sum_probs=199.8
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
+...+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 21 ~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 34568999999999998889999999999999999999999999999999999987 4899999999987531111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
....+.+++|+||++.+|+. |++||+.+..........+...+++.++++.+++. +..++.+.+|||||||||+|
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 11123469999999999985 99999987643221112333445678889999985 35688999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++.++|||+++|+
T Consensus 180 aral~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tiiivtH~~~~~~~~~d~i~~l~ 241 (272)
T PRK14236 180 ARAIAI-------EPEVLLLDEPTSALDPISTLKIEELITELKS-K----------YTIVIVTHNMQQAARVSDYTAFMY 241 (272)
T ss_pred HHHHHC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C----------CeEEEEeCCHHHHHhhCCEEEEEE
Confidence 999997 6999999999999999999999999999975 4 499999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|+++++.. +.+..+.+++..
T Consensus 242 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 269 (272)
T PRK14236 242 MGKLVEYGDTDTLFTSPAKKQTEDYITG 269 (272)
T ss_pred CCEEEecCCHHHHhcCCCcHHHHHHhcc
Confidence 999999998888653 345666776543
No 163
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=379.57 Aligned_cols=236 Identities=28% Similarity=0.455 Sum_probs=196.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--C---CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--P---DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p---~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+||+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|+++|+++.........
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 57999999999998889999999999999999999999999999999999975 5 599999999987431111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+ .|+++|+.+..........+...+++.++++.+++. +..++.+.+||||||||++||||
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara 162 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV 162 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence 2346999999999998 699999988653222112233345567788888763 45688999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.++ .|||+|||+++++.++||||++|++|+
T Consensus 163 l~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~vsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14255 163 LAV-------KPDVILLDEPTSALDPISSTQIENMLLELRDQ-----------YTIILVTHSMHQASRISDKTAFFLTGN 224 (252)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-----------CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 997 69999999999999999999999999999653 499999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+++.|++.++.. +.+...++++.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14255 225 LIEFADTKQMFLNPKEKETEDYITG 249 (252)
T ss_pred EEEeCCHHHHhcCCCChHHHHHhcc
Confidence 999998887653 345556666654
No 164
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-51 Score=389.37 Aligned_cols=237 Identities=30% Similarity=0.488 Sum_probs=197.8
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
+.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.......
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4568999999999988889999999999999999999999999999999999864 49999999999864321111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+|+|+||++.+|+. ||+||+.++.......+.....+++.++++.+|+. +..++.+.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 1123469999999999884 99999998653222112333456678889999873 567889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|+++.+ + .|||++|||++++.++|||+++|++
T Consensus 195 raL~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~----------~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 195 RTLAV-------EPEILLLDEPTSALDPKATAKIEDLIQELRG-S----------YTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred HHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
|++++.|+++++.. +.++..+.++.
T Consensus 257 G~i~~~g~~~~~~~~~~~~~~~~~~~ 282 (286)
T PRK14275 257 GVLVEHAPTAQLFTNPKDRMTEDYIT 282 (286)
T ss_pred CEEEEeCCHHHHHhCCCcHHHHHHHH
Confidence 99999998888754 34555666554
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-51 Score=419.92 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=197.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ......+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS-NIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-CHHHHHHC
Confidence 579999999999988899999999999999999999999999999999999996 899999999987542 22222234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++|||||++.+++.+||+||+.+++..+ ...+.++..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~-- 160 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK-- 160 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc--
Confidence 6999999999999999999998865321 112334455678899999999988999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..++++|.+++++| .|||+||||++++..+||||++|++|++++.|
T Consensus 161 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 161 -----QARLLILDEPTASLTESETAVLLDIIRDLKAHG----------IACIYISHKLNEVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCcHHHHHHhcCEEEEEECCEEeeec
Confidence 699999999999999999999999999997666 59999999999999999999999999999999
Q ss_pred cccccc
Q 018638 326 MTHEFT 331 (352)
Q Consensus 326 ~~~~~~ 331 (352)
+++++.
T Consensus 226 ~~~~~~ 231 (506)
T PRK13549 226 PAAGMT 231 (506)
T ss_pred ccccCC
Confidence 887763
No 166
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-51 Score=415.73 Aligned_cols=239 Identities=32% Similarity=0.546 Sum_probs=211.5
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC----ceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD----KGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~----~G~I~i~G~~~~~~~~~ 161 (352)
++|+++||++.|.. ..+++||||+|.+||++||||.|||||||+.++|+|++++. +|+|.|+|+++..+...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 26999999999999999999999999999999999999987 89999999987665433
Q ss_pred hh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc--cCCCCCChHHHHHH
Q 018638 162 EE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED--RLPSELSGGMKKRV 235 (352)
Q Consensus 162 ~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSGGqrQRv 235 (352)
.. .+..+|+||||+| .|.|-+||.+.|.-.+..+.....++..+++.++|+++||.+... ++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 22 2344699999997 567779999999887776665667888899999999999976554 59999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
.||+||+. +|++||+||||++||+..+.+++++|+++.++.+ +++|+||||+..+.++||||+|
T Consensus 164 ~iAmALa~-------~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g---------~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 164 MIAMALAL-------KPKLLIADEPTTALDVTTQAQILDLLKDLQRELG---------MAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred HHHHHHhC-------CCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC---------cEEEEEcCCHHHHHHhcCeEEE
Confidence 99999996 6999999999999999999999999999986631 6999999999999999999999
Q ss_pred EeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 316 LYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|++|++++.|++++++ .+.|+|++.++..
T Consensus 228 m~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 228 MYKGEIVETGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred EECCEEEEecCHHHHHhccCCcccHHHHhh
Confidence 9999999999999976 5779999988764
No 167
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-51 Score=376.65 Aligned_cols=229 Identities=38% Similarity=0.596 Sum_probs=199.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+..++|
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP----HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh----hhcceEE
Confidence 468999999998899999999999999999999999999999999999999999999999998754321 1236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|+.+|+.+..... +.......+++.++++.+|+.++.++.+.+||+|||||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN-------E 148 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765332 23344455678889999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|++++++ | .|||++||+++++..+|||+++|++|++++.|+.+++
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELG----------ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999865 5 5999999999999999999999999999999977776
Q ss_pred ccC-CcHHHHHHh
Q 018638 331 TSS-SNPIVQQFA 342 (352)
Q Consensus 331 ~~~-~~~~~~~~~ 342 (352)
... .+...++|+
T Consensus 219 ~~~~~~~~~~~~~ 231 (232)
T cd03300 219 YEEPANRFVADFI 231 (232)
T ss_pred HhCCchHHHHHhc
Confidence 532 344555553
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-51 Score=419.61 Aligned_cols=224 Identities=28% Similarity=0.434 Sum_probs=197.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+|
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC-HHHHHHCCe
Confidence 5799999999999888999999999999999999999999999999999999999999999999875432 222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc---CC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN---SK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~---~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
+||||++.+++.+||+||+.++.... .+ .+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998754211 11 1233455678899999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++..+|||+++|++|++++
T Consensus 163 -------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 163 -------DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG----------TAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 699999999999999999999999999998766 599999999999999999999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (510)
T PRK09700 226 SGMVSDVS 233 (510)
T ss_pred ecchhhCC
Confidence 99887764
No 169
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-51 Score=373.09 Aligned_cols=210 Identities=35% Similarity=0.554 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC--hhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS--DEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~--~~~~~~~~i 169 (352)
+.+ ||+|+|+++.+ ||||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++..... .....+.++
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 99999998766 99999999 9999999999999999999999999999999999998642111 111123369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+.+|+.+|+.+..... ......+++.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~------ 148 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA------ 148 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc------
Confidence 99999999998899999998764221 233345568889999999988899999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||+|||+.+++.+.++|++++++ | .|||++|||++++..+||++++|++|++++.|
T Consensus 149 -~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 -QPELLLLDEPFSALDRALRLQLLPELKQIKKNLN----------IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred -CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 69999999999999999999999999999775 5 59999999999999999999999999998765
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-51 Score=385.63 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=194.0
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-~~~-~~ 82 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN-FEK-LR 82 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-HHH-HH
Confidence 468999999999975 35999999999999999999999999999999999999999999999999875421 112 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+++|+||++. +|+..|+.+|+.+..... ....++..+++.++++.+++.++.++++.+||||||||++|||||+.
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-- 159 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL-- 159 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 36999999984 677789999998865322 23444556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.+.|++++++ | .|||++||+++++.. ||||++|++|++++.
T Consensus 160 -----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~----------~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 160 -----NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHN----------ITIISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 69999999999999999999999999999765 5 599999999999986 999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 224 g~~~~~~~ 231 (269)
T PRK13648 224 GTPTEIFD 231 (269)
T ss_pred cCHHHHhc
Confidence 98877643
No 171
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-51 Score=388.37 Aligned_cols=221 Identities=34% Similarity=0.549 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 90 VLIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
+||+++||+++|++ +.+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++........
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 469999999999999999999999999999999999999999999999998753211111
Q ss_pred hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.++++||+||++. ++. .||.+|+.|+.... +....+..+++.++++.+||.++.++++.+|||||||||+|||||
T Consensus 83 -~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 -IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred -HhhheEEEecChhhhhcc-ccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2346999999974 454 69999999875322 344555667789999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..+.+.|++++++ | .|||++|||++++.. |||+++|++|+
T Consensus 160 ~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g----------~tillvtH~~~~~~~-~d~v~~l~~G~ 221 (280)
T PRK13633 160 AM-------RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG----------ITIILITHYMEEAVE-ADRIIVMDSGK 221 (280)
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHhc-CCEEEEEECCE
Confidence 97 69999999999999999999999999999764 5 599999999999986 99999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (280)
T PRK13633 222 VVMEGTPKEIF 232 (280)
T ss_pred EEEecCHHHHh
Confidence 99999888764
No 172
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=381.87 Aligned_cols=236 Identities=29% Similarity=0.458 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 369999999999988899999999999999999999999999999999999985 589999999986421111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+|+|+||++.+|+ +|++||+.++..........+..+.+.++++.+++. +..++.+.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 899999987653222123334456678889999883 46788999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe---
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--- 317 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--- 317 (352)
|+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++..+|||+++|+
T Consensus 165 l~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiii~tH~~~~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 165 LAI-------KPKVLLMDEPCSALDPIATMKVEELIHSLRS-E----------LTIAIVTHNMQQATRVSDFTAFFSTDE 226 (259)
T ss_pred Hhc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhcCeEEEEeccC
Confidence 997 6999999999999999999999999999865 3 499999999999999999999998
Q ss_pred --CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|++.++.. +.++.+.+++.+
T Consensus 227 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (259)
T PRK14260 227 SRIGQMVEFGVTTQIFSNPLDSRTRDYVSG 256 (259)
T ss_pred CCCceEEEeCCHHHHhcCCCChHHHHhhhh
Confidence 599999999888753 456677776644
No 173
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.2e-51 Score=417.76 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ......+.++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL-TPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987543 2222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
||+||++.+++.+||+||+.++.. ...+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~------ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLP-----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR------ 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccc-----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc------
Confidence 999999999999999999988642 122345668899999999988999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|++|++++.|++++
T Consensus 158 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 158 -DSRILILDEPTASLTPAETERLFSRIRELLAQG----------VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 699999999999999999999999999998776 599999999999999999999999999999998877
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 227 ~~ 228 (510)
T PRK15439 227 LS 228 (510)
T ss_pred cC
Confidence 64
No 174
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.9e-51 Score=371.61 Aligned_cols=211 Identities=32% Similarity=0.542 Sum_probs=184.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++++||+++|+. .++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... . .+.+++|
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~-~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---P-YQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---h-hccceEE
Confidence 478999999974 578999999999999999999999999999999999999999999999875321 1 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+....... ...+..+++.++++.+|+.+..++.+.+||||||||++|||||+. +
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 146 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR-------P 146 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc-------C
Confidence 99999999889999999876432111 122234567889999999988999999999999999999999996 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
|+++||||||++||+.++..+.++|+++.++ + .|||+|||+++++..+||++++|++|++++.|+
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~----------~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQ----------RTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999765 4 599999999999999999999999999998874
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-50 Score=383.98 Aligned_cols=236 Identities=28% Similarity=0.472 Sum_probs=200.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4589999999999999999999999999999999999999999999999999986 79999999998753211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
.+.+|+|+||++.+|+ .|+++|+.++..........+..+.+.++++.+++.. ..++.+.+||||||||++|||
T Consensus 99 -~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 99 -FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred -HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 2336999999999998 7999999886532222244455556778899999864 467889999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||++||+.++..+.+.|++++++ .|||+|||+++++.++|||+++|++|
T Consensus 177 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 177 TLAV-------NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-----------LTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9997 59999999999999999999999999998753 49999999999999999999999999
Q ss_pred eEEEeeccccccc-CCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++++.|+++++.. +.++....++.+
T Consensus 239 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK14271 239 RLVEEGPTEQLFSSPKHAETARYVAG 264 (276)
T ss_pred EEEEeCCHHHHHhCcCcHHHHHHHhh
Confidence 9999998888754 456666776654
No 176
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-50 Score=385.01 Aligned_cols=237 Identities=32% Similarity=0.514 Sum_probs=198.7
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
.+.++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+|+|+++......
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34578999999999998889999999999999999999999999999999999987 6899999999986431111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
....+.+++|+||++.+|+. ||+||+.+..... +... ...+++.++++.+|+. +..++++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~-~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc-CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 11123469999999998885 9999998865322 2222 3456688999999984 46788999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE-EE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI-FL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~-vL 316 (352)
||||+. +|+||||||||+|||+.++..+.++|++++++ .|||++|||++++..+|||++ +|
T Consensus 192 AraL~~-------~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-----------~tiii~tH~~~~i~~~~dri~v~l 253 (285)
T PRK14254 192 ARAIAP-------DPEVILMDEPASALDPVATSKIEDLIEELAEE-----------YTVVIVTHNMQQAARISDKTAVFL 253 (285)
T ss_pred HHHHHc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHhhcCEEEEEe
Confidence 999997 69999999999999999999999999999764 399999999999999999975 67
Q ss_pred eCCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++|+|++.|+++++.. ..++.+.+++..
T Consensus 254 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 282 (285)
T PRK14254 254 TGGELVEFDDTDKIFENPESQRVEDYITG 282 (285)
T ss_pred eCCEEEEeCCHHHHHhCcCCHHHHHHhhh
Confidence 9999999998887653 445666776643
No 177
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-50 Score=388.49 Aligned_cols=222 Identities=31% Similarity=0.455 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC---CChh
Q 018638 91 LIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL---ISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~---~~~~ 162 (352)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 49999999999764 499999999999999999999999999999999999999999999999986421 0011
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
...+.+|+|++|++ .+++ .|++||+.++... .+...++..+++.++++.++|. ++.++++.+|||||||||+|||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 11233699999997 3455 6999999886532 2234445556678899999994 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|++|||||||+|||+.++..++++|+++.++ | +|||+|||+++++.++|||+++|++
T Consensus 164 al~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiiisH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 164 IIAM-------DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK----------KRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9997 59999999999999999999999999999764 5 5999999999999999999999999
Q ss_pred CeEEEeecccccc
Q 018638 319 GKIVWQGMTHEFT 331 (352)
Q Consensus 319 G~iv~~g~~~~~~ 331 (352)
|++++.|+++++.
T Consensus 227 G~i~~~g~~~~~~ 239 (289)
T PRK13645 227 GKVISIGSPFEIF 239 (289)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999877754
No 178
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.2e-51 Score=424.58 Aligned_cols=272 Identities=24% Similarity=0.326 Sum_probs=211.1
Q ss_pred HHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEe
Q 018638 17 KSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRN 96 (352)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 96 (352)
..++.|+..+++.. ........+.+|+......|+....... . ..+.....-|+++|
T Consensus 298 ~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~~-----------------~-~~~~~~~~~i~~~~ 354 (588)
T PRK11174 298 PEFYQPLRDLGTFY-----HAKAQAVGAAESLVTFLETPLAHPQQGE-----------------K-ELASNDPVTIEAED 354 (588)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCc-----------------c-ccCCCCCceEEEEe
Confidence 34456776666655 5667788888999998877642111000 0 00000112399999
Q ss_pred EEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecC
Q 018638 97 VYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 97 ls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
|++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+||+++..... ... +.+|+||+|+
T Consensus 355 vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~-~~l-r~~i~~v~Q~ 431 (588)
T PRK11174 355 LEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP-ESW-RKHLSWVGQN 431 (588)
T ss_pred eEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH-HHH-HhheEEecCC
Confidence 99755 5678999999999999999999999999999999999999 999999999999876533 333 3479999999
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHHHHHHHHHhcc
Q 018638 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+|+ .|++|||.++. ...++ +++.++++.++++++..+. ...||||||||++|||||++
T Consensus 432 ~~LF~-~TI~eNI~~g~---~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~- 502 (588)
T PRK11174 432 PQLPH-GTLRDNVLLGN---PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ- 502 (588)
T ss_pred CcCCC-cCHHHHhhcCC---CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc-
Confidence 99998 59999998852 12333 3466677777776554443 35799999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|||||||||+||+++++.+++.|+++.++ +|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 503 ------~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~-----------~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 503 ------PCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----------QTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQ 564 (588)
T ss_pred ------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecChHHHHh-CCEEEEEeCCeEeec
Confidence 59999999999999999999999999988643 499999999999876 799999999999999
Q ss_pred ecccccccCCcHHHHHHh
Q 018638 325 GMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 325 g~~~~~~~~~~~~~~~~~ 342 (352)
|+.+++.... +...+++
T Consensus 565 G~~~eL~~~~-~~y~~l~ 581 (588)
T PRK11174 565 GDYAELSQAG-GLFATLL 581 (588)
T ss_pred CCHHHHHhcc-hHHHHHH
Confidence 9777776433 3334443
No 179
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-51 Score=386.61 Aligned_cols=230 Identities=27% Similarity=0.367 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--------ceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--------KGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~--------~G~I~i~G~~~~~~~~~~ 162 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.... ..
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~-~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID-AP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC-HH
Confidence 589999999999889999999999999999999999999999999999999998 999999999875322 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.. +..++|+||++.+++.+||+||+.++..... .....+..+++.++++.+|+.+..++++.+|||||||||+|||
T Consensus 80 ~~-~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RL-ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HH-HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 22 2258999999876556899999988542111 1111233456788999999998899999999999999999999
Q ss_pred HHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 240 SIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 240 AL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||+..| .+-+.+|++|||||||++||+.++..+.++|+++.++ | .|||+||||++++.++||++++|
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN----------LGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEE
Confidence 999300 0001259999999999999999999999999999775 5 59999999999999999999999
Q ss_pred eCCeEEEeeccccccc
Q 018638 317 YEGKIVWQGMTHEFTS 332 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~ 332 (352)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999998877754
No 180
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=378.73 Aligned_cols=232 Identities=31% Similarity=0.504 Sum_probs=193.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
-+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 468999999998889999999999999999999999999999999999986 479999999997643211111123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+++|+||++.+|+. |++||+.+....... ....+..+.+.++++.+|+.+ ..++.+.+|||||||||+|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 469999999999985 999999876422211 123344566788999999964 46788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|+++.+ + .|||++|||++++..+|||+++|++|++
T Consensus 165 ~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 165 AV-------KPTMLLMDEPCSALDPVATNVIENLIQELKK-N----------FTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 97 5999999999999999999999999999854 4 5999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHh
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~ 342 (352)
++.|+++++.. +.++...+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14244 227 VEYNTTQEIFKNPQSSKTKRYI 248 (251)
T ss_pred EEeCCHHHHhcCCCChHHHHhc
Confidence 99998888754 3455555554
No 181
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-50 Score=379.56 Aligned_cols=237 Identities=29% Similarity=0.431 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----ceEEEECCEeCCCCCChhhh
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-----KGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-----~G~I~i~G~~~~~~~~~~~~ 164 (352)
.+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.........
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3699999999998888999999999999999999999999999999999999986 89999999986321111111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+..++|+||++.+|+ +|++||+.+...........+..+++.++++.+++.+ ..++.+.+||||||||++||||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 2336999999999998 8999999876432211123344556788999998743 5688899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE- 318 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~- 318 (352)
|+. +|++|||||||++||+.++..+.+.|++++++ + .|||+||||++++.++||||++|++
T Consensus 165 l~~-------~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~----------~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 165 LAV-------KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE----------LTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred Hhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhcCEEEEEccC
Confidence 997 69999999999999999999999999998754 5 5999999999999999999999999
Q ss_pred ----CeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 319 ----GKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 319 ----G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++++.|+++++.. +......+++..
T Consensus 228 ~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNSPHDSRTREYVLS 258 (261)
T ss_pred CCcCceEEEeCCHHHHHhCCCCHHHHHHHHh
Confidence 99999999988764 345566665543
No 182
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.7e-50 Score=372.34 Aligned_cols=210 Identities=30% Similarity=0.566 Sum_probs=187.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++|
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----~--~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----D--LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----c--cccEEE
Confidence 5789999999988999999999999999999999999999999999999999999999999875321 1 136999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+++.+|++||+.+..... ... .+++.++++.+|+++..++.+.+||||||||++|||||+. +
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~-------~ 142 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLL-GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLN-------H 142 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHc-CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 122 2357789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
|++|||||||+|||+.++..+.++|++++++| .|||++|||++++..+|||+++|++|+++..|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQG----------ITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999997665 599999999999999999999999999999997654
No 183
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-50 Score=381.81 Aligned_cols=235 Identities=29% Similarity=0.445 Sum_probs=196.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++........
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 458999999999998889999999999999999999999999999999999986 489999999998642111111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ .|++||+.++.... ... ....+++.++++.+++. +..++.+.+||||||||++|||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc-Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 12336999999999888 59999998865321 121 22345567778888874 3568899999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-- 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-- 317 (352)
||+. +|++|||||||++||+.++..+.++|+++.++ .|||++||+++++.++||||++|+
T Consensus 165 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-----------~tvi~vtH~~~~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 165 AIAV-------QPEVILMDEPCSALDPISTLRIEELMHELKEQ-----------YTIIIVTHNMQQAARVSDMTAFFNVE 226 (264)
T ss_pred HHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHHHHHhCCEEEEEecc
Confidence 9997 69999999999999999999999999999653 499999999999999999999998
Q ss_pred -------CCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 318 -------EGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 318 -------~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+|++++.|++.++. .+.++.+++++.+
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 261 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYVSG 261 (264)
T ss_pred cccccccCceEEEeCCHHHHHhCCCcHHHHHHhhh
Confidence 89999999998875 3456677776654
No 184
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-50 Score=374.29 Aligned_cols=218 Identities=31% Similarity=0.549 Sum_probs=193.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... . . +.+++|
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~-~-~--~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-P-E--KRDISY 75 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC-h-h--HcCEEE
Confidence 5789999999875 899999999999999999999999999999999999999999999999875421 1 1 236999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+.... .+....+..+.+.++++.+||.+..++++.+||||||||++|||||+. +
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 147 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKK-RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV-------N 147 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHc-------C
Confidence 99999999889999999876532 223344555677889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|+++..+ + .|+|++||+++++..+|||+++|++|++++.|+.+++
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~----------~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFG----------VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999765 5 5999999999999999999999999999999987766
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 218 ~~ 219 (235)
T cd03299 218 FK 219 (235)
T ss_pred Hh
Confidence 54
No 185
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.4e-50 Score=374.24 Aligned_cols=229 Identities=39% Similarity=0.641 Sum_probs=199.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . .+..++|
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~-~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---A-RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---h-hhcCEEE
Confidence 47899999999889999999999999999999999999999999999999999999999999875321 1 1336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+.+....+ ........+.+.++++.+++.++.++.+.+||+||+||++|||||+. +
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~-------~ 148 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAV-------E 148 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 999999998899999998765322 23333445667899999999989999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++||||||+|||+.++..+.++|.+++++ + .|||++||+++++.++||++++|++|++++.|+.+++
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH----------VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999775 5 5999999999999999999999999999999988776
Q ss_pred cc-CCcHHHHHHh
Q 018638 331 TS-SSNPIVQQFA 342 (352)
Q Consensus 331 ~~-~~~~~~~~~~ 342 (352)
.. +.++.+..++
T Consensus 219 ~~~~~~~~~~~~~ 231 (237)
T TIGR00968 219 YDHPANPFVMSFL 231 (237)
T ss_pred HcCCCcHHHHHhc
Confidence 53 3456655555
No 186
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=384.61 Aligned_cols=222 Identities=32% Similarity=0.501 Sum_probs=193.3
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+|+|+++... .... .+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~-~~~~-~~ 80 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE-NVWN-LR 80 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC-CHHH-Hh
Confidence 37999999999974 3599999999999999999999999999999999999999999999999987542 1122 23
Q ss_pred ceEEEEecCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 167 LRIGLVFQSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 167 ~~ig~v~Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
.+|||+||++. +++..||.||+.++... .+...++..+++.++++.+||.++.++++.+||||||||++|||||+.
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~-- 157 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL-- 157 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc--
Confidence 46999999984 56668999999876532 223455556678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||++|||++++. .||+|++|++|++++.
T Consensus 158 -----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 158 -----RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ----------LTVLSITHDLDEAA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHH-hCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999875 5 59999999999997 5999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 222 g~~~~~~~ 229 (277)
T PRK13642 222 AAPSELFA 229 (277)
T ss_pred CCHHHHhc
Confidence 98877653
No 187
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-50 Score=392.16 Aligned_cols=236 Identities=33% Similarity=0.541 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChh
Q 018638 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~ 162 (352)
.+|+++|++++|. .+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.|+|+++.......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5799999999995 3579999999999999999999999999999999999986 57999999999875311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC-HHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaI 237 (352)
...+.+++||||++.+|+ .|++|||.|+.... ... .+...+.+.++++.++|. ...++++.+|||||||||+|
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 112346999999999996 79999999865322 122 223344567888998873 45688999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|+||||||||++||+.+...+.+.|+++.++ .|+|+|||+++++.++||||++|+
T Consensus 237 ARAl~~-------~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~-----------~Tii~iTH~l~~i~~~~Driivl~ 298 (329)
T PRK14257 237 ARAIAL-------EPEVLLMDEPTSALDPIATAKIEELILELKKK-----------YSIIIVTHSMAQAQRISDETVFFY 298 (329)
T ss_pred HHHHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999997 69999999999999999999999999998753 499999999999999999999999
Q ss_pred CCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 318 EGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 318 ~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
+|+|++.|++.++. .+.++.+.+++.+.
T Consensus 299 ~G~i~e~g~~~~l~~~~~~~~~~~~~~~~ 327 (329)
T PRK14257 299 QGWIEEAGETKTIFIHPKNKRTKDYISGK 327 (329)
T ss_pred CCEEEEeCCHHHHhcCCCcHHHHHHhccc
Confidence 99999999999975 45677788887654
No 188
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-52 Score=379.43 Aligned_cols=218 Identities=30% Similarity=0.571 Sum_probs=204.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|++++|+|+||++.+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.|+|.++... ...+||
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~------~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE------IKNRIG 75 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh------hhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999986531 123699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+|.+-.||+.+||.|.+.|.. ...+++.+++++++..||+++++.+...+++.+||.|++|++.+..|++|
T Consensus 76 yLPEERGLy~k~tv~dql~yla-~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH------- 147 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLA-ELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH------- 147 (300)
T ss_pred cChhhhccCccCcHHHHHHHHH-HhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc-------
Confidence 9999999999999999999876 45568889999999999999999999999999999999999999999998
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+++|||||||||||.+.+.+.+.+.+++.+| +|||++||.|+.++++||++++|++|+.|.+|+.+++
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G----------atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEG----------ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcC----------CEEEEecchHHHHHHHhhhhheecCCceEEeccHHHH
Confidence 699999999999999999999999999999988 6999999999999999999999999999999988876
Q ss_pred cc
Q 018638 331 TS 332 (352)
Q Consensus 331 ~~ 332 (352)
..
T Consensus 218 r~ 219 (300)
T COG4152 218 RR 219 (300)
T ss_pred HH
Confidence 53
No 189
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-50 Score=424.50 Aligned_cols=238 Identities=26% Similarity=0.420 Sum_probs=201.7
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC------
Q 018638 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG------ 157 (352)
Q Consensus 88 ~~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~------ 157 (352)
.+++|+++||+++|+ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 456899999999996 2579999999999999999999999999999999999999999999999975421
Q ss_pred -C--CChh---hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCC
Q 018638 158 -L--ISDE---EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSE 226 (352)
Q Consensus 158 -~--~~~~---~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~ 226 (352)
. .... ..++.+||||||++ .+++.+||+||+.+++..+.+.+..+..+++.++++.+||. ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0 0111 11223699999998 68888999999999764332345556667889999999995 357999999
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHH
Q 018638 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 227 LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
|||||||||+|||||+. +|+||||||||++||+.++.++.++|++++++ | .|||+||||+++
T Consensus 169 LSgGq~QRv~iA~AL~~-------~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g----------~tvi~itHdl~~ 231 (623)
T PRK10261 169 LSGGMRQRVMIAMALSC-------RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS----------MGVIFITHDMGV 231 (623)
T ss_pred CCHHHHHHHHHHHHHhC-------CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHH
Confidence 99999999999999996 69999999999999999999999999999865 5 599999999999
Q ss_pred HHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 306 IRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 306 i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
+.++||||++|++|+|++.|+++++.. +.++++..++
T Consensus 232 ~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 232 VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred HHHhCCEEEEeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999999999999999999998888753 3455555554
No 190
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-50 Score=380.90 Aligned_cols=236 Identities=28% Similarity=0.435 Sum_probs=196.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChh
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~ 162 (352)
..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.......
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 34689999999999988899999999999999999999999999999999999863 6999999999864311111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
...+.+|+|+||++.+|+ .||+||+.++.... ... ....+.+.++++.+++. +..++++.+|||||||||+||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN-GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred HHHhhcEEEEccCCcccc-ccHHHHHHhHHHhc-Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 112346999999999887 49999998864322 111 12334567788888873 457889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY- 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~- 317 (352)
|||+. +|++|||||||++||+.++..+.++|+++++ + .|||++|||++++.++|||+++|+
T Consensus 174 raL~~-------~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~----------~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 174 RAIAM-------KPDVLLMDEPCSALDPISTRQVEELCLELKE-Q----------YTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHhh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C----------CEEEEEeCCHHHHHHhCCEEEEEec
Confidence 99997 6999999999999999999999999999964 4 499999999999999999999998
Q ss_pred --------CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 --------EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 --------~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|++.++.. +.++.+++++.+
T Consensus 236 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~ 271 (274)
T PRK14265 236 EIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271 (274)
T ss_pred ccccccccCceEEEeCCHHHHHhCCCCHHHHHHhhh
Confidence 899999999988753 456667777654
No 191
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-51 Score=411.27 Aligned_cols=288 Identities=25% Similarity=0.375 Sum_probs=228.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
|+....+++++++--||.|+-.+++.. +--..-....+++......|....+...-. .
T Consensus 255 ltl~~~l~~LiLAPEff~PlR~lGs~f-----H~~~~g~aa~d~i~~~l~~~~~~~~~~~~~-----------------~ 312 (559)
T COG4988 255 LTLFAGLFVLILAPEFFQPLRDLGSFF-----HAAAAGEAAADKLFTLLESPVATPGSGEKA-----------------E 312 (559)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHhhhhhHHHHHHHHhcCCCCCCCCcccc-----------------c
Confidence 344566677777778888888888777 666666666777777777665433332100 0
Q ss_pred CCCCCcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
........++++|+++.|++. ++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||.++..+....
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 011112236677999999754 8999999999999999999999999999999999999999999999999987765444
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc----------CCCCCChHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMK 232 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~----------~~~~LSGGqr 232 (352)
++ ++++||+|+|++|+. |++|||.++- ...+ ++.+.++++++|+.++.++ ....|||||+
T Consensus 393 ~~--k~i~~v~Q~p~lf~g-TireNi~l~~---~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 393 WR--KQISWVSQNPYLFAG-TIRENILLAR---PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred HH--hHeeeeCCCCccccc-cHHHHhhccC---CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 43 379999999999985 9999998853 1122 3446788888888777665 1246999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||++||||++ +++++|+||||++||.++++.+++.|.++.++ +|+|+|||++..+.+ +|+
T Consensus 463 QRlaLARAll~-------~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-----------ktvl~itHrl~~~~~-~D~ 523 (559)
T COG4988 463 QRLALARALLS-------PASLLLLDEPTAHLDAETEQIILQALQELAKQ-----------KTVLVITHRLEDAAD-ADR 523 (559)
T ss_pred HHHHHHHHhcC-------CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-----------CeEEEEEcChHHHhc-CCE
Confidence 99999999997 59999999999999999999999999999887 499999999999987 599
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++|++|++++.|..+++...+ +....++.
T Consensus 524 I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~ 553 (559)
T COG4988 524 IVVLDNGRLVEQGTHEELSEKQ-GLYANLLK 553 (559)
T ss_pred EEEecCCceeccCCHHHHhhcC-cHHHHHHH
Confidence 9999999999999887776443 33444443
No 192
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-50 Score=377.86 Aligned_cols=237 Identities=30% Similarity=0.547 Sum_probs=200.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE------eCCCCCChh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR------KRAGLISDE 162 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~------~~~~~~~~~ 162 (352)
.++|+++|++++|+++.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+ ++... ...
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~-~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI-DAI 86 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC-CHH
Confidence 47899999999999999999999999999999999999999999999999999999987777764 33221 111
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIA 238 (352)
. .+.+++|+||++.+|+.+|++||+.++.........++..+++.++++.+++. +..++.+..||||||||++||
T Consensus 87 ~-~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 87 K-LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred H-HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 1 23469999999999988999999998753221123345556788999999996 456889999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|+++||||||++||+.++..+.+.|.++.+ + .|||+|||+++++..+||++++|++
T Consensus 166 ral~~-------~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 166 RALAL-------KPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E----------IAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred HHHHc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------cEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 4999999999999999999999999
Q ss_pred CeEEEeeccccccc-CCcHHHHHHhcCC
Q 018638 319 GKIVWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 319 G~iv~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
|++++.|+++++.. +.++..+.|+.|.
T Consensus 228 g~i~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (257)
T PRK14246 228 GELVEWGSSNEIFTSPKNELTEKYVIGR 255 (257)
T ss_pred CEEEEECCHHHHHhCCCcHHHHHHhhcc
Confidence 99999998888764 4566777776553
No 193
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.4e-50 Score=426.83 Aligned_cols=279 Identities=28% Similarity=0.412 Sum_probs=221.1
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
....+.+...+..++.++..+.+.. ..........+|+......|....... . .+
T Consensus 391 iG~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-------------------~~ 445 (686)
T TIGR03797 391 LGSFLAFNTAFGSFSGAVTQLSNTL-----ISILAVIPLWERAKPILEALPEVDEAK-T-------------------DP 445 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcccccCc-C-------------------CC
Confidence 3445555555666677777777666 667778888899988877654211000 0 00
Q ss_pred CCCcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
......|+++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+++..... ..
T Consensus 446 ~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~ 524 (686)
T TIGR03797 446 GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV-QA 524 (686)
T ss_pred CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH-HH
Confidence 01112499999999995 3579999999999999999999999999999999999999999999999999876533 33
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqr 232 (352)
. +.+||||+|++.+|+ .|++|||.++. . .+ ++++.++++.+|++++.++.| ..||||||
T Consensus 525 l-r~~i~~v~Q~~~lf~-gTI~eNi~~~~---~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 525 V-RRQLGVVLQNGRLMS-GSIFENIAGGA---P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred H-HhccEEEccCCccCc-ccHHHHHhcCC---C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 2 347999999999997 59999998852 1 22 234678889999887665554 57999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++||||||||+||+.+++.+++.|+++ + .|+|+|||+++.+.. |||
T Consensus 595 QRialARAll~-------~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~----------~T~IiItHr~~~i~~-~D~ 653 (686)
T TIGR03797 595 QRLLIARALVR-------KPRILLFDEATSALDNRTQAIVSESLERL---K----------VTRIVIAHRLSTIRN-ADR 653 (686)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHh---C----------CeEEEEecChHHHHc-CCE
Confidence 99999999997 59999999999999999999999999876 3 499999999999876 799
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|++|+|++.|+.+++... +....+++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~ 682 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMAR-EGLFAQLA 682 (686)
T ss_pred EEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 999999999999987777654 34444444
No 194
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-50 Score=373.65 Aligned_cols=235 Identities=31% Similarity=0.517 Sum_probs=197.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++..........
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998889999999999999999999999999999999999874 48999999999874311111112
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHHHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+.+++|+||++.+|+. |+.||+.++...+.....+..++++.++++.+|+. ...++.+.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999984 99999987643222123344567788899999984 356888999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.++|+++++ + .|||++||+++++..+||++++|++|++
T Consensus 162 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 162 AV-------SPEVILMDEPCSALDPISTTKIEDLIHKLKE-D----------YTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred Hc-------CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 97 6999999999999999999999999999964 4 4999999999999999999999999999
Q ss_pred EEeeccccccc-CCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
++.|+++++.. +.++.+.+++.+
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14266 224 IESGLTDQIFINPKDKRTEDYITG 247 (250)
T ss_pred EEeCCHHHHHhCCCChHHHHHhcc
Confidence 99999888753 455666776643
No 195
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-51 Score=419.36 Aligned_cols=285 Identities=29% Similarity=0.443 Sum_probs=221.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
+.....|++-.+.+-..+..+++.. +-.-+.-.+-+|+.+.....|+-... ... .|
T Consensus 404 ~g~L~sFllY~~~~g~sl~~ls~~y-----s~lmkgvGAs~rvFel~dr~P~i~~~-G~~------------------~p 459 (716)
T KOG0058|consen 404 SGALSSFLLYQVQLGSSLSGLSSFY-----SELMKGVGASERVFELMDRKPRIPLT-GTL------------------AP 459 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHhccCCCCCCC-Ccc------------------cc
Confidence 3333444544555555555555544 44445556677888888877643322 110 11
Q ss_pred CCCcceEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 86 DDGDVLIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
..-.-.|+++||+|+|+.+ ++|+|+||+|++||++|||||||+||||+.++|..|++|++|+|.+||+|+.++. ..
T Consensus 460 ~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-~~ 538 (716)
T KOG0058|consen 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-HK 538 (716)
T ss_pred ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-HH
Confidence 1112349999999999764 5999999999999999999999999999999999999999999999999998764 44
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
+.+ ++||+|-|+|.||. -||+|||+|+.. ..+.+ ++..+.++.+.+++....| .+|||||
T Consensus 539 ~lr-~~Ig~V~QEPvLFs-~sI~eNI~YG~~---~~t~e----~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 539 YLR-RKIGLVGQEPVLFS-GSIRENIAYGLD---NATDE----EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHH-HHeeeeeccceeec-ccHHHHHhcCCC---CCCHH----HHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 443 47999999999997 599999999874 23333 3555666666655554444 6999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||+||||||++ +|.||||||.||+||.+++..+.+.|.++.++ .|||+|+|+++++++ ||
T Consensus 610 KQRIAIARALlr-------~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-----------rTVlvIAHRLSTV~~-Ad 670 (716)
T KOG0058|consen 610 KQRIAIARALLR-------NPRVLILDEATSALDAESEYLVQEALDRLMQG-----------RTVLVIAHRLSTVRH-AD 670 (716)
T ss_pred HHHHHHHHHHhc-------CCCEEEEechhhhcchhhHHHHHHHHHHhhcC-----------CeEEEEehhhhHhhh-cc
Confidence 999999999998 59999999999999999999999999998765 499999999999987 69
Q ss_pred EEEEEeCCeEEEeecccccccCCcHHHHHHhc
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+|+++|++++.|+-+|++...+....++.+
T Consensus 671 ~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 671 QIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred EEEEEcCCeEEecccHHHHhhCcccHHHHHHH
Confidence 99999999999999777777665444555544
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.7e-50 Score=368.84 Aligned_cols=212 Identities=34% Similarity=0.576 Sum_probs=185.1
Q ss_pred EEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-hhcc
Q 018638 92 IDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISG 166 (352)
Q Consensus 92 l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~~~~ 166 (352)
|+++||++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++....... ...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 67999999999999999999999999999999999999999999999999875322111 1123
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+|+|+||++.+|+.+|+.||+.+..........++..+++.++++.+|+.+..++++.+||+|||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~--- 158 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH--- 158 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999998899999999865433223445556678999999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|++++++ + .|||++||+++. .++||+|++|++|++
T Consensus 159 ----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 ----RPKLVLADEPTAALDSKSGRDVVELMQKLAREQG----------CTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred ----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 69999999999999999999999999999764 4 599999999985 579999999999986
No 197
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-51 Score=358.03 Aligned_cols=216 Identities=37% Similarity=0.565 Sum_probs=192.1
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
+|++++++|..+. ..+|++|+|.|++||.++||||||||||||+-+++||..|++|+|++.|+++..+..+.. .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6999999999864 569999999999999999999999999999999999999999999999999887654432 3
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+++|||||.+.|.|+||..||++.++.... -...+....+.++|+++||.+.+..+|.+|||||||||+|||||+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g-e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~- 163 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRG-ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG- 163 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcC-CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC-
Confidence 44579999999999999999999999985443 2334445667899999999999999999999999999999999985
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
.|+||+.||||.+||..+-+.+.++|..+.++.. +|.|+||||...+.+ |+|++.|.+|+|+++
T Consensus 164 ------~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G---------~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 164 ------RPDVLFADEPTGNLDRATGDKIADLLFALNRERG---------TTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred ------CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC---------ceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 7999999999999999999999999999987631 699999999999987 699999999999753
No 198
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.9e-50 Score=418.98 Aligned_cols=283 Identities=29% Similarity=0.442 Sum_probs=226.8
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.++.....++.++..++... ........+.+|+.+....|+.-...... ..
T Consensus 267 ~~g~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~~------------------~~ 323 (567)
T COG1132 267 TVGALAAFILYLLRLLTPILQLGEVV-----SLLQRASAAAERLFELLDEEPEVEDPPDP------------------LK 323 (567)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCCCC------------------CC
Confidence 34556677777777788888888777 77788888999999999886531111100 01
Q ss_pred CCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 85 EDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
...+ -|+++||+++|+ ++++|+|+||+|++||.+|||||||||||||+++|+|+++|++|+|.+||+++........
T Consensus 324 ~~~~--~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIG--SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCC--eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 1112 299999999998 5789999999999999999999999999999999999999999999999999987543332
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGGqr 232 (352)
+.+|+||||++.+|. .||+|||.++.. ..+++ ++.++++.++++++..+ ....||||||
T Consensus 402 --r~~I~~V~Qd~~LF~-~TI~~NI~~g~~---~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 402 --RKRIGIVSQDPLLFS-GTIRENIALGRP---DATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred --HHhccEEcccceeec-ccHHHHHhcCCC---CCCHH----HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 337999999999998 699999999642 12333 35556666655544333 3468999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++||||||||+||+.++..+++.+.++. ++ +|+|+|+|+++++.. ||+
T Consensus 472 QrlaiARall~-------~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~----------rT~iiIaHRlsti~~-aD~ 532 (567)
T COG1132 472 QRLAIARALLR-------NPPILILDEATSALDTETEALIQDALKKLL-KG----------RTTLIIAHRLSTIKN-ADR 532 (567)
T ss_pred HHHHHHHHHhc-------CCCEEEEeccccccCHHhHHHHHHHHHHHh-cC----------CEEEEEeccHhHHHh-CCE
Confidence 99999999998 599999999999999999999999999887 43 488999999999998 799
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+||++|+|++.|+.+++... +...+++.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred EEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 999999999999988888765 33444443
No 199
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-50 Score=418.74 Aligned_cols=282 Identities=22% Similarity=0.355 Sum_probs=215.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
....++......++.++..+.... ..........+|+......|....... . ..+
T Consensus 282 g~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~-~-------------------~~~ 336 (582)
T PRK11176 282 GTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDLEQEKDEGK-R-------------------VIE 336 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCcCCCCC-c-------------------CCC
Confidence 343344444445566777666555 566677777888887776653211000 0 000
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.....|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||+++....... .
T Consensus 337 ~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~-~ 415 (582)
T PRK11176 337 RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS-L 415 (582)
T ss_pred CCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHH-H
Confidence 11123999999999964 56999999999999999999999999999999999999999999999999987653222 2
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+|+||||++.+|+ .|++|||.++.. ...+ ++++.++++.+|++++.++.| .+|||||||
T Consensus 416 -~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 416 -RNQVALVSQNVHLFN-DTIANNIAYART--EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred -HhhceEEccCceeec-chHHHHHhcCCC--CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 336999999999998 599999988531 1122 334677788888766555443 569999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|++|||||++ +|++|||||||++||+.++..+++.|.++.++ +|+|+|||+++.+.. ||+|
T Consensus 488 Ri~LARall~-------~~~ililDEptsaLD~~t~~~i~~~l~~~~~~-----------~tvI~VtHr~~~~~~-~D~I 548 (582)
T PRK11176 488 RIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQKN-----------RTSLVIAHRLSTIEK-ADEI 548 (582)
T ss_pred HHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999988543 499999999998765 8999
Q ss_pred EEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++|++|++++.|+.+++.... +..++++
T Consensus 549 i~l~~g~i~e~g~~~~l~~~~-~~y~~l~ 576 (582)
T PRK11176 549 LVVEDGEIVERGTHAELLAQN-GVYAQLH 576 (582)
T ss_pred EEEECCEEEEeCCHHHHHhCC-ChHHHHH
Confidence 999999999999877776443 3334443
No 200
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-49 Score=371.80 Aligned_cols=221 Identities=27% Similarity=0.421 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++|+++||++.|+++.+|++|||+|++||+++|+|+||||||||+++|+|+ ++|++|+|+++|+++.... .....+.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhhee
Confidence 479999999999988899999999999999999999999999999999998 5899999999999875432 2222222
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcC---C---CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENS---K---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALAR 239 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIAr 239 (352)
.++|+||++.+++.+|+.+|+.+...... . ....+..+++.++++.+|+. ...++.+. +|||||||||+|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 48999999999999999999987542111 0 11223345678899999997 47788887 59999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~ 318 (352)
||+. +|++|||||||++||+.++..+.++|+++.++| .|||++|||++++..+ ||++++|++
T Consensus 165 al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~~tH~~~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 165 MALL-------DSELAILDETDSGLDIDALKIIAEGINKLMTSE----------NSIILITHYQRLLDYIKPDYVHVMQN 227 (252)
T ss_pred HHHc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHhhhCCEEEEEeC
Confidence 9997 699999999999999999999999999998665 5999999999999886 899999999
Q ss_pred CeEEEeeccc
Q 018638 319 GKIVWQGMTH 328 (352)
Q Consensus 319 G~iv~~g~~~ 328 (352)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999775
No 201
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.2e-50 Score=416.96 Aligned_cols=267 Identities=25% Similarity=0.406 Sum_probs=210.1
Q ss_pred HHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcce
Q 018638 12 FPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVL 91 (352)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (352)
+...+..+..|+..++... ........+.+++......+..+.... . ..... ..
T Consensus 287 ~~~~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------~------~~~~~--~~ 340 (592)
T PRK10790 287 FISYLGRLNEPLIELTTQQ-----SMLQQAVVAGERVFELMDGPRQQYGND-------------D------RPLQS--GR 340 (592)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccCCCC-------------c------cCCCC--Ce
Confidence 3333344556666655555 555666777777777665543211000 0 00111 23
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++....... . +.+|+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~-l-~~~i~ 418 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV-L-RQGVA 418 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH-H-HhheE
Confidence 999999999964 56999999999999999999999999999999999999999999999999987643322 2 34799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIAr 239 (352)
||+|++.+|+. |++|||.++. ..+. +++.++++.+|++++.++.| ..||||||||++|||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~----~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR----DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC----CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 99999999985 9999998852 1232 34677888888876665544 579999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||++ +|+||||||||++||+.+++.+.+.|+++.++ +|+|+|||+++.+.. ||+|++|++|
T Consensus 490 aLl~-------~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-----------~tvIivtHr~~~l~~-~D~ii~l~~G 550 (592)
T PRK10790 490 VLVQ-------TPQILILDEATANIDSGTEQAIQQALAAVREH-----------TTLVVIAHRLSTIVE-ADTILVLHRG 550 (592)
T ss_pred HHHh-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-----------CEEEEEecchHHHHh-CCEEEEEECC
Confidence 9997 59999999999999999999999999988654 499999999998875 7999999999
Q ss_pred eEEEeecccccccCC
Q 018638 320 KIVWQGMTHEFTSSS 334 (352)
Q Consensus 320 ~iv~~g~~~~~~~~~ 334 (352)
++++.|+.+++....
T Consensus 551 ~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 551 QAVEQGTHQQLLAAQ 565 (592)
T ss_pred EEEEEcCHHHHHhCC
Confidence 999999888876544
No 202
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-50 Score=409.08 Aligned_cols=220 Identities=24% Similarity=0.361 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA-STTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC-CHHHHHhCCE
Confidence 579999999999988899999999999999999999999999999999999999999999999987532 2222223469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhc-CC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYEN-SK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~-~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||+||++.+++.+||+||+.++.... .+ ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR---- 157 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh----
Confidence 99999999999999999998864211 11 2344556678899999999888899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+||||++|++|+++..++.
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 158 ---NARVIAFDEPTSSLSAREIEQLFRVIRELRAEG----------RVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred ---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 699999999999999999999999999997766 5999999999999999999999999999887653
No 203
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1e-49 Score=410.62 Aligned_cols=236 Identities=27% Similarity=0.444 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~ 160 (352)
+||+++||+++|++ +.+|++|||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47999999999963 5799999999999999999999999999999999999987 79999999998754322
Q ss_pred hh--hhccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHH
Q 018638 161 DE--EISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKK 233 (352)
Q Consensus 161 ~~--~~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQ 233 (352)
.. ..++.+||||||++. +++.+|+.+|+.+......+.+..+..+++.++++.+||.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 112246999999975 67778999998765422223344556677899999999975 468999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|||
T Consensus 164 rv~iAraL~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 164 RVMIAMALLT-------RPELLIADEPTTALDVSVQAQILQLLRELQQELN----------MGLLFITHNLSIVRKLADR 226 (529)
T ss_pred HHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC----------CeEEEEcCcHHHHHHhcCE
Confidence 9999999996 69999999999999999999999999999765 5 5999999999999999999
Q ss_pred EEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
|++|++|++++.|+++++.. +.+...+.++
T Consensus 227 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 257 (529)
T PRK15134 227 VAVMQNGRCVEQNRAATLFSAPTHPYTQKLL 257 (529)
T ss_pred EEEEECCEEEEeCCHHHHhhCCCCHHHHHHH
Confidence 99999999999998887653 3344555554
No 204
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.9e-50 Score=427.58 Aligned_cols=282 Identities=27% Similarity=0.428 Sum_probs=219.2
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+...+..++.|+..+.... ..........+|+......|....... ... ......
T Consensus 407 lt~G~lva~~~l~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~---------~~~~~~-- 469 (710)
T TIGR03796 407 LTIGMLVAFQSLMSSFLEPVNNLVGFG-----GTLQELEGDLNRLDDVLRNPVDPLLEE-EEA---------PAAGSE-- 469 (710)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccc-ccc---------cccccc--
Confidence 344555566666667778888777777 677888889999999887764321110 000 000000
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+.......|+++||+++|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.....
T Consensus 470 ~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~- 548 (710)
T TIGR03796 470 PSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR- 548 (710)
T ss_pred cCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH-
Confidence 00111124999999999974 579999999999999999999999999999999999999999999999999876432
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
... +.+||||+|++.+|+ .|++|||.++. ...+. +++.++++.+|++++.++.| ..||||
T Consensus 549 ~~l-r~~i~~v~Q~~~lf~-gTi~eNi~l~~---~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 549 EVL-ANSVAMVDQDIFLFE-GTVRDNLTLWD---PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred HHH-HhheeEEecCChhhh-ccHHHHhhCCC---CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 222 347999999999997 59999998742 11233 34667788888776555443 679999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++||||||||+||+.++..+++.|++ .+ +|+|+|||+++.+.. |
T Consensus 620 QrQRiaLARall~-------~p~iliLDEptS~LD~~te~~i~~~l~~---~~----------~T~IiitHrl~~i~~-~ 678 (710)
T TIGR03796 620 QRQRLEIARALVR-------NPSILILDEATSALDPETEKIIDDNLRR---RG----------CTCIIVAHRLSTIRD-C 678 (710)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEECccccCCHHHHHHHHHHHHh---cC----------CEEEEEecCHHHHHh-C
Confidence 9999999999997 5999999999999999999999999875 34 599999999999876 8
Q ss_pred CEEEEEeCCeEEEeecccccccC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~ 333 (352)
|||++|++|+|++.|+.+++...
T Consensus 679 D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 679 DEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred CEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999987777643
No 205
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.6e-49 Score=373.27 Aligned_cols=228 Identities=26% Similarity=0.421 Sum_probs=194.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+|+++||+++| ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~----~~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP----CALRG 78 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc----ccccc
Confidence 69999999999 56799999999999999999999999999999999999999 99999999998642 11223
Q ss_pred ceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccCCCCCChHHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 167 ~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+|+|+||++. +.+.+|+.+|+.+.+.... ... ..+++.++++.+++.+ ..++.+.+|||||||||+|||||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALG-KPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcC-CCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 36999999974 4556799999876432221 222 2356788999999986 57899999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||++||+.++..+.++|++++++ | .|||++||+++++..+|||+++|++|+
T Consensus 156 ~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~til~~sH~~~~~~~~~d~v~~l~~G~ 218 (254)
T PRK10418 156 LC-------EAPFIIADEPTTDLDVVAQARILDLLESIVQKRA----------LGMLLVTHDMGVVARLADDVAVMSHGR 218 (254)
T ss_pred hc-------CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcC----------cEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 97 69999999999999999999999999999765 5 599999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+++.|+++++.. +.++..+.++.
T Consensus 219 i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 219 IVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred EEEecCHHHHhhCCCCHHHHHHHH
Confidence 999998888754 34556666654
No 206
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.2e-50 Score=412.33 Aligned_cols=237 Identities=28% Similarity=0.489 Sum_probs=201.2
Q ss_pred CcceEEEEeEEEEeC-----------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 88 GDVLIDCRNVYKSFG-----------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 88 ~~~~l~~~nls~~y~-----------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..++|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 346899999999995 3579999999999999999999999999999999999984 8999999999875
Q ss_pred CCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHH
Q 018638 157 GLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (352)
Q Consensus 157 ~~~~~~~-~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGq 231 (352)
....... ..+.+|+||||++ .+++.+||+||+.+++..+. .....+..+++.++++.+|+. +..++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 4321111 1133699999997 47888999999998653221 123344456788999999997 57899999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||+|||||+. +|++|||||||++||+.++..++++|++++++ | .|||+||||++++..+|
T Consensus 431 ~qrv~la~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvi~vsHd~~~~~~~~ 493 (529)
T PRK15134 431 RQRIAIARALIL-------KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ----------LAYLFISHDLHVVRALC 493 (529)
T ss_pred HHHHHHHHHHhC-------CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC----------CEEEEEeCCHHHHHHhc
Confidence 999999999996 69999999999999999999999999999865 5 59999999999999999
Q ss_pred CEEEEEeCCeEEEeeccccccc-CCcHHHHHHh
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
|||++|++|+|++.|+++++.. +.++++++++
T Consensus 494 d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 526 (529)
T PRK15134 494 HQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLL 526 (529)
T ss_pred CeEEEEECCEEEEEcCHHHHhcCCCChHHHHHh
Confidence 9999999999999998888754 4567777765
No 207
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=352.43 Aligned_cols=235 Identities=32% Similarity=0.526 Sum_probs=207.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC--CCCCChhhh--cc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR--AGLISDEEI--SG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~--~~~~~~~~~--~~ 166 (352)
.|+++|+++.||...+|-||+|+.++||.+.++||||||||||+|.++-|.-|++|+..|.|... +.....+.. .+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999988643 222222222 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+.+|+|||+..|+|.+||.||+......-.+.++++...++.++|+++.|.++.|+.|-.|||||+|||+|||||+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm---- 157 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM---- 157 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh----
Confidence 4699999999999999999999775444456788888888999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
++|++||+||||++|||+-..++.++|++|...| .|-++|||..+.+.+.|.+|+.|++|+|++.|+
T Consensus 158 ---mkpqvllfdeptaaldpeitaqvv~iikel~~tg----------itqvivthev~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 158 ---MEPQVLLFDEPTAALDPEITAQIVSIIKELAETG----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred ---cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC----------ceEEEEEeehhHHHhhhhheEeeecCeeEeecc
Confidence 4799999999999999999999999999999877 699999999999999999999999999999998
Q ss_pred ccccccCCcHHHHHHh
Q 018638 327 THEFTSSSNPIVQQFA 342 (352)
Q Consensus 327 ~~~~~~~~~~~~~~~~ 342 (352)
...+..+..+....++
T Consensus 225 a~~ft~p~te~f~~yl 240 (242)
T COG4161 225 ASCFTEPQTEAFKNYL 240 (242)
T ss_pred hhhccCccHHHHHHHh
Confidence 8888766555544444
No 208
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7e-50 Score=369.39 Aligned_cols=216 Identities=31% Similarity=0.447 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~ 82 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK-PEIY-RQQ 82 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC-HHHH-Hhc
Confidence 46899999999999888999999999999999999999999999999999999999999999999875432 2222 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
++|+||++.+|+ .|++||+.+...... ... ..+++.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 83 i~~~~q~~~l~~-~tv~enl~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~---- 154 (225)
T PRK10247 83 VSYCAQTPTLFG-DTVYDNLIFPWQIRN-QQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF---- 154 (225)
T ss_pred cEEEeccccccc-ccHHHHHHhHHhhcC-CCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc----
Confidence 999999999887 599999987543221 111 234567899999996 57899999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-CCeEEEee
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-EGKIVWQG 325 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.++|+++.++ | .|||++||+++++. .||++++|+ ++..+++|
T Consensus 155 ---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 155 ---MPKVLLLDEITSALDESNKHNVNEIIHRYVREQN----------IAVLWVTHDKDEIN-HADKVITLQPHAGEMQEA 220 (225)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEECChHHHH-hCCEEEEEecccchHhhh
Confidence 69999999999999999999999999999764 5 59999999999996 699999995 55666777
Q ss_pred cccc
Q 018638 326 MTHE 329 (352)
Q Consensus 326 ~~~~ 329 (352)
.+|
T Consensus 221 -~~~ 223 (225)
T PRK10247 221 -RYE 223 (225)
T ss_pred -hhc
Confidence 443
No 209
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.3e-50 Score=362.59 Aligned_cols=204 Identities=39% Similarity=0.577 Sum_probs=177.3
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccceEEE
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRIGL 171 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ig~ 171 (352)
++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ....+++++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 47999999988999999999999999999999999999999999999999999999999985422111 1122346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|++||+.+.... .+....+..+++.++++.+|+.+..++++.+||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~-------~ 152 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY-KKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK-------D 152 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc-------C
Confidence 99999999989999999986532 223344556678899999999989999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++|||||||++||+.++..+.++|+++.+++ .|+|++||+++.+ .+||++++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEG----------KTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999999997665 5999999999976 579999875
No 210
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-50 Score=408.43 Aligned_cols=219 Identities=21% Similarity=0.321 Sum_probs=192.3
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+.+++|+|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-SKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-HHHHHhCCEEEEe
Confidence 468999999889999999999999999999999999999999999999999999999999875322 2222234699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 174 QSAALFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
|++.+++.+||+||+.++.....+ ....+..+++.++++.+++....++++.+|||||||||+|||||+. +
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~-------~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY-------N 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh-------C
Confidence 999989889999999876422111 1334445678899999999988999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||||++|++|++++.|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG----------CGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999997766 5999999999999999999999999999999987775
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-49 Score=407.49 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+|+++||+++|+++.+|++|||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... .....+.+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-IRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-HHHHHhCC
Confidence 48999999999988899999999999999999999999999999999999987 7999999999875432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc--C-CCCHHHHHHHHHHHHHHcCCCccc-ccCCCCCChHHHHHHHHHHHHhcc
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN--S-KMRDEQISELVKENLAAVGLKGVE-DRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~--~-~~~~~~~~~~v~~~l~~~gL~~~~-~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
||||||++.+++.+||+||+.++.... . ....++..+++.++++.+++.+.. ++++.+|||||||||+|||||+.
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~- 158 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK- 158 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh-
Confidence 999999999999999999998864321 1 123344556788999999998654 67899999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..+.++|++++++| .|||+||||++++..+||+|++|++|+++..
T Consensus 159 ------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 159 ------QARLLILDEPSSSLTEKETEILLDIIRDLKAHG----------VACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 699999999999999999999999999998766 5999999999999999999999999999999
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
++++++
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 877654
No 212
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-49 Score=373.02 Aligned_cols=236 Identities=28% Similarity=0.468 Sum_probs=197.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCC--h
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLIS--D 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~--~ 161 (352)
..+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..... .
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3569999999999988899999999999999999999999999999999999975 79999999986531100 1
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC-HHHHHHHHHHHHHHcCCC----cccccCCCCCChHHHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR-DEQISELVKENLAAVGLK----GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~~LSGGqrQRva 236 (352)
....+.+|+|+||++.+|+. |++||+.++.... +.. ....++.+.++++.+++. +..++.+.+|||||||||+
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 11123369999999999985 9999998865322 222 223345677888888873 4668889999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..+.++|+++++ + .|||+|||+++++..+|||+++|
T Consensus 172 laral~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~----------~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 172 IARALAT-------DPEILLFDEPTSALDPIATASIEELISDLKN-K----------VTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred HHHHHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C----------CEEEEEecCHHHHHHhCCEEEEE
Confidence 9999997 6999999999999999999999999999965 3 49999999999999999999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
++|++++.|+.+++. .+.++++++++.+
T Consensus 234 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 262 (265)
T PRK14252 234 YMGELIEFGATDTIFIKPKNKQTEDYITG 262 (265)
T ss_pred ECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 999999999888865 4557778877754
No 213
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-50 Score=402.21 Aligned_cols=224 Identities=32% Similarity=0.483 Sum_probs=203.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++++++||+|+||+.++|++|||+|.+||++||+|.||||||||+|+|+|.++||+|+|+++|+.... .++.+.....
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~-~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAF-SSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccC-CCHHHHHhCC
Confidence 467999999999999999999999999999999999999999999999999999999999999998754 3455555567
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
|+.|+|+.+|+|++||.|||-++..... ..+++++.+++.++|+.+|+....+.++.+||.||||.|+|||||..
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~-- 162 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF-- 162 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--
Confidence 9999999999999999999987754332 35778889999999999999544899999999999999999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+++|||||||||+|+....+.+++++++|+++| .+||+|||+|+++.++||||.||+||+.+...
T Consensus 163 -----~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G----------v~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 163 -----DARVLILDEPTAALTVKETERLFDLIRRLKAQG----------VAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred -----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 599999999999999999999999999999988 69999999999999999999999999999998
Q ss_pred cc-ccc
Q 018638 326 MT-HEF 330 (352)
Q Consensus 326 ~~-~~~ 330 (352)
+. .++
T Consensus 228 ~~~~~~ 233 (500)
T COG1129 228 PTAAET 233 (500)
T ss_pred ccccCC
Confidence 73 554
No 214
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-49 Score=380.63 Aligned_cols=240 Identities=32% Similarity=0.492 Sum_probs=199.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----CCceEEEECCEeCCCCCCh
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-----PDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-----p~~G~I~i~G~~~~~~~~~ 161 (352)
+..++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 44568999999999998899999999999999999999999999999999999986 6899999999987431111
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC-----------CCC-HHHHHHHHHHHHHHcCCC----cccccCCC
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS-----------KMR-DEQISELVKENLAAVGLK----GVEDRLPS 225 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~-----------~~~-~~~~~~~v~~~l~~~gL~----~~~~~~~~ 225 (352)
....+.+|+|+||++.+|+ .||+||+.++..... ... .....+++.++++.+++. +..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1112336999999999888 599999998643211 011 123356678899999884 45688899
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|||||||||+|||||++ +|+||||||||+|||+.++..+.++|++++++ .|||+|||+++.
T Consensus 200 ~LSgGq~qrv~LAraL~~-------~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-----------~tiiivtH~~~~ 261 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAV-------DPEVILMDEPASALDPIATSKIEDLIEELAEE-----------YTVVVVTHNMQQ 261 (305)
T ss_pred cCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-----------CEEEEEEcCHHH
Confidence 999999999999999997 69999999999999999999999999999764 499999999999
Q ss_pred HHhhcCEE-EEEeCCeEEEeeccccccc-CCcHHHHHHhcCC
Q 018638 306 IRRAVDRL-IFLYEGKIVWQGMTHEFTS-SSNPIVQQFASGS 345 (352)
Q Consensus 306 i~~~aDrv-~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~~~ 345 (352)
+..+|||+ ++|++|++++.|+++++.. ..++.+.+++.+.
T Consensus 262 i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 303 (305)
T PRK14264 262 AARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITGK 303 (305)
T ss_pred HHHhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhccc
Confidence 99999996 5789999999998888754 3456777777653
No 215
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.8e-50 Score=423.93 Aligned_cols=276 Identities=30% Similarity=0.422 Sum_probs=221.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+......++.|+..+.+.. ........+.+|+......|+........ .
T Consensus 399 ls~G~l~a~~~~~~~~~~p~~~l~~~~-----~~~~~~~~~~~ri~~il~~~~e~~~~~~~----------------~-- 455 (694)
T TIGR03375 399 LTMGGLIACVMLSGRALAPLGQLAGLL-----TRYQQAKTALQSLDELMQLPVERPEGTRF----------------L-- 455 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCCC----------------C--
Confidence 344555666666777788888877777 67788889999999988876532110000 0
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
........|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++......
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535 (694)
T ss_pred CCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHH
Confidence 00011124999999999964 5699999999999999999999999999999999999999999999999998765332
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++. ...+. +++.++++.++++++.++.| ..||||
T Consensus 536 -~l-r~~i~~v~Q~~~lf~-~TI~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 -DL-RRNIGYVPQDPRLFY-GTLRDNIALGA---PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred -HH-HhccEEECCChhhhh-hhHHHHHhCCC---CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 22 347999999999998 59999998752 11233 34677788888876665554 579999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++||||||||+||+.++..+++.|.++.++ +|+|+|||+++.+. .|
T Consensus 606 QrQRlalARall~-------~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~-----------~T~iiItHrl~~~~-~~ 666 (694)
T TIGR03375 606 QRQAVALARALLR-------DPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-----------KTLVLVTHRTSLLD-LV 666 (694)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-----------CEEEEEecCHHHHH-hC
Confidence 9999999999997 59999999999999999999999999998653 49999999999885 58
Q ss_pred CEEEEEeCCeEEEeecccccc
Q 018638 311 DRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~ 331 (352)
|||++|++|++++.|+.+++.
T Consensus 667 D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 667 DRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999766654
No 216
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-49 Score=371.60 Aligned_cols=235 Identities=32% Similarity=0.476 Sum_probs=197.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.+.+++++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++........
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3569999999999998999999999999999999999999999999999999986 79999999998743211111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc----ccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG----VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~----~~~~~~~~LSGGqrQRvaIAr 239 (352)
..+.+|+|+||++.+|+ +|++||+.++..... . ..+..+.+.++++.+++.. ..++++.+||||||||++|||
T Consensus 86 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNR-Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hhhhceEEEecCCcccc-ccHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 22346999999999884 899999988753221 2 2234567888999999853 446788999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-- 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-- 317 (352)
||+. +|++|||||||+|||+.++..+.++|+++.+ + .|+|++||+++++.++||||++|+
T Consensus 163 al~~-------~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 163 AIAT-------EPEVLLLDEPCSALDPIATRRVEELMVELKK-D----------YTIALVTHNMQQAIRVADTTAFFSVD 224 (261)
T ss_pred HHHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C----------CeEEEEeCCHHHHHHhCCEEEEEecc
Confidence 9997 6999999999999999999999999999954 4 499999999999999999999996
Q ss_pred ------CCeEEEeeccccccc-CCcHHHHHHhcC
Q 018638 318 ------EGKIVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 318 ------~G~iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
+|++++.|+++++.. +.++....++.+
T Consensus 225 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 258 (261)
T PRK14263 225 ISQGTRTGYLVEMGPTAQIFQNPREQLTSDYISG 258 (261)
T ss_pred cccccCCceEEEeCCHHHHHhCCCcHHHHHHhhc
Confidence 899999998888754 334555666654
No 217
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.6e-50 Score=424.44 Aligned_cols=278 Identities=22% Similarity=0.328 Sum_probs=218.5
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+...+..+++|+..+.+.. ........+.+|+......|......... .
T Consensus 409 ls~G~lva~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~----------------~-- 465 (708)
T TIGR01193 409 LTLGQLITFNALLSYFLTPLENIINLQ-----PKLQAARVANNRLNEVYLVDSEFINKKKR----------------T-- 465 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccccccc----------------c--
Confidence 344555556666666778887777766 66777888899999988776432111000 0
Q ss_pred CCCCCcceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
........|+++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.......
T Consensus 466 ~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 466 ELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545 (708)
T ss_pred CCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHH
Confidence 0001112399999999997 467999999999999999999999999999999999999999999999999987653333
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGq 231 (352)
. +.+||||+|++.+|+. |++|||.++.. ...+. +++.++++.++++++.++. ...|||||
T Consensus 546 -l-r~~i~~v~Q~~~lf~g-TI~eNi~l~~~--~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 546 -L-RQFINYLPQEPYIFSG-SILENLLLGAK--ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred -H-HHheEEEecCceehhH-HHHHHHhccCC--CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 2 3369999999999975 99999988521 11233 3456777777776554433 36799999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.+++.+++.|+++ ++ .|+|+|||+++.+. .||
T Consensus 617 rQRialARall~-------~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~----------~T~IiitHr~~~~~-~~D 676 (708)
T TIGR01193 617 KQRIALARALLT-------DSKVLILDESTSNLDTITEKKIVNNLLNL--QD----------KTIIFVAHRLSVAK-QSD 676 (708)
T ss_pred HHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHh--cC----------CEEEEEecchHHHH-cCC
Confidence 999999999997 59999999999999999999999999875 34 49999999999886 589
Q ss_pred EEEEEeCCeEEEeecccccccC
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~ 333 (352)
+|++|++|++++.|+.+++...
T Consensus 677 ~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 677 KIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred EEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999987777643
No 218
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.1e-49 Score=368.82 Aligned_cols=206 Identities=31% Similarity=0.551 Sum_probs=178.7
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe-cCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAA 177 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~-Q~~~ 177 (352)
+.|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.+++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~--~~~-~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR--RKK-FLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc--chh-hcccEEEEcCCccc
Confidence 566777899999999999999999999999999999999999999999999999875321 111 233699998 5577
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
+++.+|++||+.+..... +...++..+++.++++.+|+.+..++++.+||||||||++|||||+. +|++|||
T Consensus 106 ~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~-------~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH-------EPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEE
Confidence 888899999998765322 23444555677889999999988999999999999999999999997 6999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
||||++||+.++..+.++|++++++ + .|||++||+++++..+||++++|++|++++.|
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERG----------TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCC----------CEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999765 4 59999999999999999999999999998764
No 219
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3e-49 Score=364.88 Aligned_cols=213 Identities=28% Similarity=0.498 Sum_probs=184.0
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ 78 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence 4789999999964 579999999999999999999999999999999999999 999999999997631 12
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHH-HHHHcCCCcccccCCCCCChHHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKE-NLAAVGLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~-~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+.+++|+||++.+|+.+||+||+.+...... .........++.+ .++.+++.+..++.+.+|||||||||+||||
T Consensus 79 -~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 79 -FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred -hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 23469999999999998999999998653221 1112222234555 8999999988899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|+++.+++ .|+|++||++ +++..+||++++|++|
T Consensus 158 l~~-------~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 158 LLW-------DPKVLILDEPTSGLDSFTALNLVSTLSQLARRN----------RIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHh-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 997 599999999999999999999999999997665 5999999999 6899999999999999
Q ss_pred eEEEee
Q 018638 320 KIVWQG 325 (352)
Q Consensus 320 ~iv~~g 325 (352)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 998765
No 220
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-50 Score=361.79 Aligned_cols=229 Identities=31% Similarity=0.470 Sum_probs=201.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++..++.+|++|||++++||+++|+||||||||||||.|+|-+.|++|++.++|.++..+. .....+ +-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~-~~~lA~-~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP-PEELAR-HRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC-HHHHHH-Hhh
Confidence 689999999999999999999999999999999999999999999999999999999999999987753 333332 578
Q ss_pred EEecCCCC-CCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSAAL-FDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~~l-~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
.+||+..+ || .||+|.+.++...+.. ....+..+.++++|.++++..+..|...+|||||||||.+||.|++-|.-.
T Consensus 79 VlpQ~s~laFp-Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 79 VLPQNSSLAFP-FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hcccCcccccc-eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 99999887 66 6999999998765533 222344556788999999999999999999999999999999999865432
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
. ++++|+||||||+||...+..++++.+++.++| ..|+.|-||++.+..|||||++|++||+++.|+|+
T Consensus 158 ~-~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g----------~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 158 P-SGRWLFLDEPTSALDIAHQHHTLRLARQLAREG----------GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred C-CCceEEecCCccccchHHHHHHHHHHHHHHhcC----------CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 2 356999999999999999999999999999887 48999999999999999999999999999999999
Q ss_pred ccccC
Q 018638 329 EFTSS 333 (352)
Q Consensus 329 ~~~~~ 333 (352)
+++++
T Consensus 227 ~vlt~ 231 (259)
T COG4559 227 DVLTD 231 (259)
T ss_pred HhcCH
Confidence 98753
No 221
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.6e-49 Score=422.30 Aligned_cols=274 Identities=28% Similarity=0.418 Sum_probs=213.5
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+......++.++..+.... ........+.+|+......++....... . .
T Consensus 416 t~G~lva~~~~~~~l~~~l~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~~~~-----------------~--~ 471 (711)
T TIGR00958 416 SSGNLVSFLLYQEQLGEAVRVLSYVY-----SGMMQAVGASEKVFEYLDRKPNIPLTGT-----------------L--A 471 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCCCC-----------------C--C
Confidence 34445555555666677777766666 6667778888888888776543211000 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 85 EDDGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
+.+....|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++......
T Consensus 472 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1111224999999999964 4699999999999999999999999999999999999999999999999998765322
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++.. ..+ ++++.++++.++++++.++.| .+||||
T Consensus 552 -~l-r~~i~~v~Q~~~lF~-gTIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 552 -YL-HRQVALVGQEPVLFS-GSVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred -HH-HhhceEEecCccccc-cCHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 22 336999999999997 599999988631 122 234677888888876655543 579999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|+|||||||||+||+++++.+.+ .. ..++ +|+|+|||+++.+.. |
T Consensus 622 QkQRlalARALl~-------~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~----------~TvIiItHrl~~i~~-a 680 (711)
T TIGR00958 622 QKQRIAIARALVR-------KPRVLILDEATSALDAECEQLLQE-SR--SRAS----------RTVLLIAHRLSTVER-A 680 (711)
T ss_pred HHHHHHHHHHHhc-------CCCEEEEEccccccCHHHHHHHHH-hh--ccCC----------CeEEEEeccHHHHHh-C
Confidence 9999999999997 599999999999999999999888 22 1233 599999999999865 7
Q ss_pred CEEEEEeCCeEEEeecccccccC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~ 333 (352)
|+|++|++|+|++.|+.+++.+.
T Consensus 681 D~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 681 DQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred CEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999987777643
No 222
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-49 Score=369.29 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=180.2
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..... +.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~-~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-DPAWL-RRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-CHHHH-hhcE
Confidence 478999999963 5799999999999999999999999999999999999999999999999986432 22222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+ .||.||+.+... ........+ .+.++++.+ +++...++++.+|||||||||+|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999998886 699999987431 112222111 123444555 5566678889999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++++ | .|||++|||++++. .||++++|++|+++
T Consensus 155 ~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 215 (237)
T cd03252 155 H-------NPRILIFDEATSALDYESEHAIMRNMHDICA-G----------RTVIIIAHRLSTVK-NADRIIVMEKGRIV 215 (237)
T ss_pred h-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 7 6999999999999999999999999999864 5 59999999999996 59999999999999
Q ss_pred EeecccccccC
Q 018638 323 WQGMTHEFTSS 333 (352)
Q Consensus 323 ~~g~~~~~~~~ 333 (352)
+.|+++++...
T Consensus 216 ~~~~~~~~~~~ 226 (237)
T cd03252 216 EQGSHDELLAE 226 (237)
T ss_pred EEcCHHHHHhc
Confidence 99988877644
No 223
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.6e-49 Score=409.64 Aligned_cols=258 Identities=25% Similarity=0.422 Sum_probs=206.5
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~ 113 (352)
........+.+|+......|+...... . . ........|+++||+++|++ +++|+|+||+
T Consensus 302 ~~~~~~~~s~~ri~~ll~~~~~~~~~~-~------~------------~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~ 362 (574)
T PRK11160 302 QHLGQVIASARRINEITEQKPEVTFPT-T------S------------TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQ 362 (574)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCc-c------c------------CCCCCCCeEEEEEEEEECCCCCCcceecceEE
Confidence 455666778888888877664211000 0 0 00011234999999999964 4699999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... . +.+|+||+|++.+|+ .|++|||.++..
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~-~-r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~ 439 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA-L-RQAISVVSQRVHLFS-ATLRDNLLLAAP 439 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHH-H-HhheeEEcccchhhc-ccHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999987653322 2 346999999999997 599999988531
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccccc----------CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDR----------LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~----------~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
..+ ++++.++++.++++++.++ ....||||||||++|||||++ +|++|||||||++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~-------~~~ililDE~ts~ 505 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH-------DAPLLLLDEPTEG 505 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCccc
Confidence 122 3457888999999887766 346799999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
||+.+++.+.+.|.++.+ + +|+|+|||+++.+.. ||+|++|++|++++.|+.+++.... +..++++
T Consensus 506 lD~~t~~~i~~~l~~~~~-~----------~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~-g~y~~l~ 571 (574)
T PRK11160 506 LDAETERQILELLAEHAQ-N----------KTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQ-GRYYQLK 571 (574)
T ss_pred CCHHHHHHHHHHHHHHcC-C----------CEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcC-cHHHHHH
Confidence 999999999999999864 3 499999999999875 8999999999999999877776443 3444443
No 224
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-49 Score=373.53 Aligned_cols=219 Identities=27% Similarity=0.395 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.+
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-----~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-----ALQKNL 79 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----hhccce
Confidence 4699999999995 5789999999999999999999999999999999999999999999999988631 112235
Q ss_pred EEEEecCCCCC--CCCCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 169 IGLVFQSAALF--DSLTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 169 ig~v~Q~~~l~--~~lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++|+||++.++ ...++++|+.++..... ........+++.++++.+||.+..++++.+||||||||++|||||+.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999998652 23478898865421110 01122334567889999999988999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|++++++| .|||++|||++++..+||+++++ +|++++
T Consensus 160 -------~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g----------~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 160 -------QGQVILLDEPFTGVDVKTEARIISLLRELRDEG----------KTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred -------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 699999999999999999999999999997766 59999999999999999999877 899999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 222 ~g~~~~~~ 229 (272)
T PRK15056 222 SGPTETTF 229 (272)
T ss_pred ecCHHhcc
Confidence 99887764
No 225
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-49 Score=366.37 Aligned_cols=216 Identities=32% Similarity=0.530 Sum_probs=182.0
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~-~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT-LASL-RRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC-HHHH-HhhE
Confidence 4789999999765 7999999999999999999999999999999999999999999999999865421 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+|+||++.+|+ .||+||+.+.... ....+..+ .+.++++.+ ++....++++.+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999887 6999999875421 12222211 234556665 6777788899999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||++||+.++..+.+.|+++.+ + .|||++||+++++.. ||++++|++|+++
T Consensus 155 ~-------~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 155 K-------DPPILILDEATSALDTESERLVQAALERLMK-N----------RTTFVIAHRLSTIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred c-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHhh-CCEEEEecCCeEe
Confidence 6 6999999999999999999999999999864 4 599999999999976 9999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 216 ~~~~~~~~~~ 225 (234)
T cd03251 216 ERGTHEELLA 225 (234)
T ss_pred eeCCHHHHHH
Confidence 9998777643
No 226
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4e-49 Score=382.78 Aligned_cols=244 Identities=31% Similarity=0.523 Sum_probs=215.9
Q ss_pred CCCcceEEEEeEEEEeCC-----------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 86 DDGDVLIDCRNVYKSFGE-----------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~-----------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
.+..+.|+.+||.+.|.- ..++++|||++++||.+||||.||||||||-++|.+|++++ |+|.|+|++
T Consensus 271 ~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 271 EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 345678999999999941 35899999999999999999999999999999999999887 999999999
Q ss_pred CCCCCChhh-hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcC-CCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCCh
Q 018638 155 RAGLISDEE-ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENS-KMRDEQISELVKENLAAVGLKG-VEDRLPSELSG 229 (352)
Q Consensus 155 ~~~~~~~~~-~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~-~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSG 229 (352)
+..+....- ..+.++-.||||| .|.|.+||.+-|..++..+. ..+..+..+++.++|+.+||+. ..+|+|+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 876543321 1244699999998 58999999999999987665 5677888899999999999974 78999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
|||||+|||||++. +|++++||||||+||..-+.++.++|++|.++.. .+++|||||+..+..+
T Consensus 430 GQRQRIAIARAliL-------kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~---------LsYLFISHDL~VvrAl 493 (534)
T COG4172 430 GQRQRIAIARALIL-------KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG---------LSYLFISHDLAVVRAL 493 (534)
T ss_pred chhhHHHHHHHHhc-------CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhC---------CeEEEEeccHHHHHHh
Confidence 99999999999995 7999999999999999999999999999987632 6999999999999999
Q ss_pred cCEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 310 VDRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 310 aDrv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
||+|+||++|+||++|++++++ .+.++|++.++....
T Consensus 494 ~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L~~aa~ 531 (534)
T COG4172 494 CHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAF 531 (534)
T ss_pred hceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHHHHhhc
Confidence 9999999999999999999976 578999999886543
No 227
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-49 Score=361.19 Aligned_cols=208 Identities=29% Similarity=0.401 Sum_probs=183.0
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
...++++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 5 ~~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~- 79 (214)
T PRK13543 5 LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----D- 79 (214)
T ss_pred CCCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----h-
Confidence 33445789999999999988899999999999999999999999999999999999999999999999986431 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
.+..++|++|++.+++.+|++||+.+...... . ...+.+.++++.+++.+..++++.+|||||||||+||||++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~- 154 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG-R---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS- 154 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC-C---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc-
Confidence 12359999999999988999999987643221 1 123456788999999988999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+|++|||||||++||+.+++.+.++|+++.++| .|+|++|||++++.++|||+++|+.
T Consensus 155 ------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 ------PAPLWLLDEPYANLDLEGITLVNRMISAHLRGG----------GAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred ------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecChhhhhhhcceEEEEee
Confidence 599999999999999999999999999998776 5999999999999999999999864
No 228
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.2e-49 Score=358.21 Aligned_cols=202 Identities=32% Similarity=0.454 Sum_probs=178.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. . .+.+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-~~-~-~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RD-E-YHQDLL 77 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-hH-H-hhhheE
Confidence 58999999999988999999999999999999999999999999999999999999999999986532 11 1 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+|+.||+.+....+. . ...+++.++++.+|+.+..++++.+||||||||++|||||++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~------- 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT------- 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 99999999998999999988653221 1 223567889999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+|+++||||||++||+.++..+.++|+++++++ .|||++|||++++..+.+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQG----------GMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecChhhhccCCceEEec
Confidence 699999999999999999999999999997665 59999999999999888888877
No 229
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8.1e-49 Score=366.01 Aligned_cols=221 Identities=28% Similarity=0.424 Sum_probs=184.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
||+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.|+|+++.... .....+..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS-PEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-HHHHhhcc
Confidence 589999999999888999999999999999999999999999999999995 699999999998765432 22222346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhh---cCC---CCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYE---NSK---MRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALARS 240 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~---~~~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIArA 240 (352)
++|++|++.+++.+|+.+++.+.... ... .......+.+.++++.+++. +..++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999988877877776543211 000 11223456678899999994 56777775 899999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G 319 (352)
|++ +|++|||||||++||+.++..+.++|+++++++ .|||++|||++++..+ ||+|++|++|
T Consensus 160 l~~-------~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~----------~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 160 AVL-------EPELCILDESDSGLDIDALKIVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred HHc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 997 599999999999999999999999999998765 5999999999999887 8999999999
Q ss_pred eEEEeecccc
Q 018638 320 KIVWQGMTHE 329 (352)
Q Consensus 320 ~iv~~g~~~~ 329 (352)
++++.|+++.
T Consensus 223 ~i~~~g~~~~ 232 (248)
T PRK09580 223 RIVKSGDFTL 232 (248)
T ss_pred eEEEeCCHHH
Confidence 9999996653
No 230
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-49 Score=405.24 Aligned_cols=225 Identities=23% Similarity=0.419 Sum_probs=192.8
Q ss_pred cceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECCEeCCCCCChhhh
Q 018638 89 DVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 89 ~~~l~~~nls~~y~---~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.++|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++... .....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~-~~~~~ 335 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR-NPQQA 335 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC-CHHHH
Confidence 46899999999994 4679999999999999999999999999999999999998 5999999999987432 22122
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhhhh-cCC---CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NSK---MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 165 ~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~~---~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
.+.+|+|+||++ .+++.+||.||+.++... ... ....+..+++.++++.+++. +..++++.+|||||||||+
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 233699999996 478889999999876421 111 12333456688999999996 5789999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||++|||++++.++|||+++|
T Consensus 416 lA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 416 LAKCLLL-------NPKILILDEPTRGIDVGAKYEIYKLINQLVQQG----------VAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEEEEE
Confidence 9999996 699999999999999999999999999998776 59999999999999999999999
Q ss_pred eCCeEEEeecccccc
Q 018638 317 YEGKIVWQGMTHEFT 331 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~ 331 (352)
++|+++..|+++++.
T Consensus 479 ~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 479 HEGKLKGDLINHNLT 493 (506)
T ss_pred ECCEEEEEeccccCC
Confidence 999999999887763
No 231
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.8e-49 Score=364.15 Aligned_cols=217 Identities=30% Similarity=0.499 Sum_probs=185.0
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChhhhccceEEEEecCCC--CC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA--LF 179 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~--l~ 179 (352)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...+.+|+|++|++. ++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~----~~~~~~i~~~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL----SIRGRHIATIMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh----hhhhheeEEEecCchhhcC
Confidence 57999999999999999999999999999999999999 899999999986432 122236999999984 55
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
+.+|+++|+.+...... ....+..+++.++++.+++. +..++.+.+|||||||||+|||||+. +|++||
T Consensus 77 ~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~-------~p~vll 148 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL-------EPPFLI 148 (230)
T ss_pred cccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc-------CCCEEE
Confidence 67899999977643222 22334456788999999997 57899999999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SS 334 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~ 334 (352)
|||||+|||+.++..+.+.|++++++ + .|||++||+++++..+|||+++|++|++++.|+++++.. +.
T Consensus 149 LDEPt~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 149 ADEPTTDLDVVNQARVLKLLRELRQLFG----------TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 99999999999999999999999764 5 599999999999999999999999999999998888753 34
Q ss_pred cHHHHHHhcC
Q 018638 335 NPIVQQFASG 344 (352)
Q Consensus 335 ~~~~~~~~~~ 344 (352)
....+.++.+
T Consensus 219 ~~~~~~~~~~ 228 (230)
T TIGR02770 219 HETTRKLLSA 228 (230)
T ss_pred CHHHHHHHHh
Confidence 5666667654
No 232
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.5e-49 Score=404.38 Aligned_cols=224 Identities=33% Similarity=0.520 Sum_probs=189.8
Q ss_pred CcceEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC-CEe---CCCC
Q 018638 88 GDVLIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR-GRK---RAGL 158 (352)
Q Consensus 88 ~~~~l~~~nls~~y~-----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~-G~~---~~~~ 158 (352)
..++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 346899999999994 2579999999999999999999999999999999999999999999996 642 2111
Q ss_pred CC-hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----ccccCCCCCChHHH
Q 018638 159 IS-DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----VEDRLPSELSGGMK 232 (352)
Q Consensus 159 ~~-~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----~~~~~~~~LSGGqr 232 (352)
.. .....+.+|+|+||++.+++.+||+||+.+.+.. ....+...+++.++++.+||.+ +.++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 10 0111133699999999999999999999875421 1233334566889999999974 67899999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||+|||||+. +|++|||||||++||+.+++.++++|++++++ | .|||+||||++++.++||
T Consensus 434 qrv~laral~~-------~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 434 HRVALAQVLIK-------EPRIVILDEPTGTMDPITKVDVTHSILKAREEME----------QTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------cEEEEEeCCHHHHHHhCC
Confidence 99999999996 69999999999999999999999999999765 5 599999999999999999
Q ss_pred EEEEEeCCeEEEeeccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~ 330 (352)
|+++|++|++++.|++.++
T Consensus 497 ~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 497 RAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999977665
No 233
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-49 Score=354.04 Aligned_cols=213 Identities=34% Similarity=0.580 Sum_probs=193.7
Q ss_pred ceEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~--~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+++.+++++.+|+++. +|+|||++|.+||.++++|||||||||||++++|+.+|+.|+|.+||+.+..- ..
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--ga----- 74 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--GA----- 74 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--Cc-----
Confidence 3578899999999877 99999999999999999999999999999999999999999999999987642 11
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
.-|.|||+..|+|.+||.+|++|++.. .+.++.+..+++.+.+..+||.+..++++.+|||||||||.|||||+.
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~---- 149 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV---- 149 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc----
Confidence 248999999999999999999999854 457788888889999999999999999999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe--CCeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY--EGKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~--~G~iv~~ 324 (352)
+|++|+||||+++||.-++++++++|-++.++ | +.+++||||++++.-+++|++||+ .|+|++.
T Consensus 150 ---eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg----------k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 150 ---EPQLLLLDEPFGALDALTREQMQELLLDLWQETG----------KQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred ---CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC----------CeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 79999999999999999999999999998765 4 489999999999999999999998 5789887
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
-++
T Consensus 217 ~~~ 219 (259)
T COG4525 217 LPL 219 (259)
T ss_pred cCC
Confidence 643
No 234
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.8e-49 Score=364.60 Aligned_cols=200 Identities=35% Similarity=0.561 Sum_probs=176.5
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . +.+|+||++.+|+.+||+|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~------~~~~v~q~~~l~~~~tv~e 73 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-P------DRMVVFQNYSLLPWLTVRE 73 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-h------hheEEecCcccCCCCCHHH
Confidence 57999999999999999999999999999999999999999999999864321 1 2589999999999899999
Q ss_pred HHHhhhhh-cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 187 NVGFLLYE-NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 187 ni~~~~~~-~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
|+.++... .......+..+++.++++.+|+.+..++++.+|||||||||+|||||+. +|++|||||||+|||
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~-------~p~lllLDEPt~gLD 146 (230)
T TIGR01184 74 NIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI-------RPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc-------CCCEEEEcCCCcCCC
Confidence 99886421 1223344555668899999999989999999999999999999999997 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 266 PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+.++..+.++|++++++ | .|||+||||++++..+||||++|++|++++.|+..++
T Consensus 147 ~~~~~~l~~~l~~~~~~~~----------~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHR----------VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999765 5 5999999999999999999999999999999876554
No 235
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-49 Score=363.19 Aligned_cols=205 Identities=35% Similarity=0.548 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADL-RRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCC-HHHH-HhhE
Confidence 789999999975 56999999999999999999999999999999999999999999999999864321 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
+|+||++.+|+ .|+.||+.+.... .. .+.+.++++.+++.+..++.| .+||||||||++||
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPL---AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCC---CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 99999999887 6999999774311 11 234567888888887777655 69999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||+|||+.++..+.++|++++++ .|||++|||++.+ ++||++++|++
T Consensus 153 ~al~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-----------~tii~~sH~~~~~-~~~d~v~~l~~ 213 (220)
T cd03245 153 RALLN-------DPPILLLDEPTSAMDMNSEERLKERLRQLLGD-----------KTLIIITHRPSLL-DLVDRIIVMDS 213 (220)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-----------CEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 99997 69999999999999999999999999998653 3999999999987 69999999999
Q ss_pred CeEEEee
Q 018638 319 GKIVWQG 325 (352)
Q Consensus 319 G~iv~~g 325 (352)
|++++.|
T Consensus 214 g~i~~~~ 220 (220)
T cd03245 214 GRIVADG 220 (220)
T ss_pred CeEeecC
Confidence 9997653
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.8e-49 Score=404.18 Aligned_cols=222 Identities=32% Similarity=0.479 Sum_probs=189.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECC-----------------
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRG----------------- 152 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G----------------- 152 (352)
|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+|+|+|++ +|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999888999999999999999999999999999999999997 79999999972
Q ss_pred ------EeCCC----CC--Chh--hhccceEEEEecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Q 018638 153 ------RKRAG----LI--SDE--EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 217 (352)
Q Consensus 153 ------~~~~~----~~--~~~--~~~~~~ig~v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~ 217 (352)
.++.. .. ... ...+.+++|+||+ +.+|+.+||+||+.+++... +...++..+++.++++.+||+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCh
Confidence 22110 00 010 1113369999997 67888899999999875332 234455567789999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEE
Q 018638 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASY 296 (352)
Q Consensus 218 ~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tv 296 (352)
+..++++.+|||||||||+|||||+. +|++|||||||++||+.++..++++|+++.++ | .||
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tv 222 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAK-------EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG----------ISM 222 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC----------cEE
Confidence 88999999999999999999999996 69999999999999999999999999999664 5 599
Q ss_pred EEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 297 VVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 297 IivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
|+||||++.+.++||||++|++|+++..|+++++.
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 99999999999999999999999999988776653
No 237
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.7e-49 Score=360.52 Aligned_cols=208 Identities=32% Similarity=0.468 Sum_probs=176.6
Q ss_pred eEEEEeEEEEeCC-------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC--CE--eCCCCC
Q 018638 91 LIDCRNVYKSFGE-------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GR--KRAGLI 159 (352)
Q Consensus 91 ~l~~~nls~~y~~-------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~--G~--~~~~~~ 159 (352)
||+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |+ ++....
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999962 479999999999999999999999999999999999999999999998 42 332211
Q ss_pred Chh--hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHH
Q 018638 160 SDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 160 ~~~--~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRva 236 (352)
... ...+.+++|+||++.+++.+||+||+.+.+... +.......+++.++++.+|+.+ ..++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 111 112236999999999999999999998764322 2334445567888999999976 458899999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+.++..+.++|++++++| .|||+|||+++++..+|||++.+
T Consensus 160 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIA-------DYPILLLDEPTASLDAANRQVVVELIAEAKARG----------AALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhc-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcceeEec
Confidence 9999997 699999999999999999999999999997766 59999999999999999999876
No 238
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1e-48 Score=407.75 Aligned_cols=275 Identities=23% Similarity=0.394 Sum_probs=206.8
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
...+.+...+..++.++..+.+.. ..........+++......|+...... . . . ...
T Consensus 273 g~~~a~~~l~~~~~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~~~~---~---~----------~--~~~ 329 (588)
T PRK13657 273 GEVVAFVGFATLLIGRLDQVVAFI-----NQVFMAAPKLEEFFEVEDAVPDVRDPP---G---A----------I--DLG 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCC---C---C----------C--CcC
Confidence 333344444455566666555544 344555666666666655442111000 0 0 0 000
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.....|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 330 ~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~-~~~- 407 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR-ASL- 407 (588)
T ss_pred CCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH-HHH-
Confidence 11124999999999975 579999999999999999999999999999999999999999999999999876532 222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
+.+|+||||++.+|+ .|++|||.++. ...++ +++.++++.++++++.++. ...||||||||
T Consensus 408 r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~---~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 408 RRNIAVVFQDAGLFN-RSIEDNIRVGR---PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred HhheEEEecCccccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 346999999999997 59999998752 11233 3356667777766544433 35799999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|+++|||||||+||+.++..+++.|.++.+ + +|+|+|||+++.+. .||+|+
T Consensus 480 ialARall~-------~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~----------~tvIiitHr~~~~~-~~D~ii 540 (588)
T PRK13657 480 LAIARALLK-------DPPILILDEATSALDVETEAKVKAALDELMK-G----------RTTFIIAHRLSTVR-NADRIL 540 (588)
T ss_pred HHHHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEecHHHHH-hCCEEE
Confidence 999999997 5999999999999999999999999988754 3 49999999999875 589999
Q ss_pred EEeCCeEEEeecccccccC
Q 018638 315 FLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~~~ 333 (352)
+|++|++++.|+.+++...
T Consensus 541 ~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 541 VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred EEECCEEEEeCCHHHHHHC
Confidence 9999999999987776544
No 239
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-50 Score=360.66 Aligned_cols=232 Identities=31% Similarity=0.470 Sum_probs=208.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++.+|+++|++|++|.+++|||||||||||||.++++|+++|+|+|+++|.++....+.. ++ ++++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~-LA-k~lS 78 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE-LA-KKLS 78 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH-HH-HHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998765443 32 2689
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCC-CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSK-MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.+-|+..+...+||+|-+.|+.+++.. ....+-+..+.++++.++|+++.+|+..+||||||||..||+.|++
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ------ 152 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ------ 152 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec------
Confidence 999999888889999999999876543 2334556778999999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+.+.++||||.++||......+++.|++++++-+ +|||+|-||++++..++|+|+-|++|+++.+|++++
T Consensus 153 -dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~---------KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~e 222 (252)
T COG4604 153 -DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG---------KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222 (252)
T ss_pred -cCcEEEecCcccccchHHHHHHHHHHHHHHHHhC---------CeEEEEEecccHHHhhhhheeeecCCEEEecCCHHH
Confidence 4999999999999999999999999999988721 599999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+.++ +.+.+.+
T Consensus 223 ii~~--~~L~eiy 233 (252)
T COG4604 223 IIQP--EILSEIY 233 (252)
T ss_pred hcCH--HHHHHHh
Confidence 8753 4455555
No 240
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.8e-49 Score=406.31 Aligned_cols=284 Identities=25% Similarity=0.402 Sum_probs=222.2
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+......+...+..++.|+..+.+.. ......+...+|+...+..++...... . .
T Consensus 269 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~-------------------~ 323 (571)
T TIGR02203 269 TAGDFTAFITAMIALIRPLKSLTNVN-----APMQRGLAAAESLFTLLDSPPEKDTGT-R-------------------A 323 (571)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCC-C-------------------C
Confidence 34455555556666778887777776 667777888888888877654321100 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
.......|+++||+++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-LA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-HH
Confidence 0011123999999999964 56999999999999999999999999999999999999999999999999986543 33
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
+. +.+|+|+||++.+|+ .|++|||.++.. ...+ ++++.++++.+|++++.++.| ..|||||
T Consensus 403 ~~-~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~--~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 403 SL-RRQVALVSQDVVLFN-DTIANNIAYGRT--EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HH-HhhceEEccCccccc-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 32 346999999999997 599999987521 0122 344677888888877665554 4699999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++||||+++ +|+++||||||++||+.+++.+++.|.++.++ +|+|+|||+.+.+. .||
T Consensus 475 rQRiaLARall~-------~~~illLDEpts~LD~~~~~~i~~~L~~~~~~-----------~tiIiitH~~~~~~-~~D 535 (571)
T TIGR02203 475 RQRLAIARALLK-------DAPILILDEATSALDNESERLVQAALERLMQG-----------RTTLVIAHRLSTIE-KAD 535 (571)
T ss_pred HHHHHHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEehhhHHHH-hCC
Confidence 999999999997 59999999999999999999999999987543 49999999998865 589
Q ss_pred EEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
+|++|++|++++.|+.+++... ++..+++.
T Consensus 536 ~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 565 (571)
T TIGR02203 536 RIVVMDDGRIVERGTHNELLAR-NGLYAQLH 565 (571)
T ss_pred EEEEEeCCEEEeeCCHHHHHHc-CCHHHHHH
Confidence 9999999999999987777643 34445444
No 241
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-48 Score=366.83 Aligned_cols=221 Identities=27% Similarity=0.380 Sum_probs=184.6
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||++. .+|+||||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++.... .... +..++|+
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-~~~~-~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-AAEL-ARHRAYL 74 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-HHHH-hhheEEe
Confidence 57888875 38999999999999999999999999999999999986 5999999999875432 2222 2359999
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
||++.+++.+|+++|+.+.... .....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+++....+|
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred cccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9998887789999999875321 12233445678899999999988999999999999999999999984000000147
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
++|||||||+|||+.++..+.++|+++++++ .|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQG----------IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999999997665 599999999999999999999999999999998777653
No 242
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-49 Score=364.12 Aligned_cols=215 Identities=29% Similarity=0.553 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ... .+.+++
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKS-LRSMIG 80 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC-HHH-HhhhEE
Confidence 889999999975 57999999999999999999999999999999999999999999999998865321 222 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|+||++.+|+. |++||+.+.... ....+..+ .+.++++.+ ++....++.+.+|||||||||+|||||+.
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPN---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999998875 999999875311 11121111 112233333 44445566789999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|||+.++..+++.|+++. ++ .|||+|||+++++.. ||++++|++|++++
T Consensus 157 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (229)
T cd03254 157 -------DPKILILDEATSNIDTETEKLIQEALEKLM-KG----------RTSIIIAHRLSTIKN-ADKILVLDDGKIIE 217 (229)
T ss_pred -------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEecCHHHHhh-CCEEEEEeCCeEEE
Confidence 699999999999999999999999999985 45 599999999999865 99999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+.+++.
T Consensus 218 ~~~~~~~~ 225 (229)
T cd03254 218 EGTHDELL 225 (229)
T ss_pred eCCHHHHH
Confidence 88766653
No 243
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-48 Score=366.55 Aligned_cols=203 Identities=32% Similarity=0.530 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-------------~~i 69 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-------------LRI 69 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-------------cCE
Confidence 4799999999999888999999999999999999999999999999999999999999999862 159
Q ss_pred EEEecCCCCCCC--CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+||++.+++. .|+.+|+.+. .... .+++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~---- 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR----PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLN---- 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc----cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhc----
Confidence 999999987765 3788876542 1111 2346789999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++ + .|||++|||++++..+||+|++|++ ++++.|+
T Consensus 138 ---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g----------~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~ 203 (251)
T PRK09544 138 ---RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD----------CAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGT 203 (251)
T ss_pred ---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEECC-ceEeeCC
Confidence 69999999999999999999999999999765 5 5999999999999999999999965 7999998
Q ss_pred ccccc
Q 018638 327 THEFT 331 (352)
Q Consensus 327 ~~~~~ 331 (352)
++++.
T Consensus 204 ~~~~~ 208 (251)
T PRK09544 204 PEVVS 208 (251)
T ss_pred HHHHh
Confidence 87765
No 244
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-48 Score=413.91 Aligned_cols=285 Identities=24% Similarity=0.383 Sum_probs=223.1
Q ss_pred ccccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCC
Q 018638 4 LSSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFE 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
++....+.+..++..++.|+..+++.. ..........+|+......|.........
T Consensus 392 it~G~lia~~~l~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~e~~~~~~~------------------- 447 (694)
T TIGR01846 392 LSPGQLVAFNMLAGRVTQPVLRLAQLW-----QDFQQTGIALERLGDILNSPTEPRSAGLA------------------- 447 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccCCCCC-------------------
Confidence 344555666666677788888877777 67788889999999988776432110000
Q ss_pred CCCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
........|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||+++......
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 00011124999999999953 5699999999999999999999999999999999999999999999999998765333
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGG 230 (352)
.. +.+|+||+|++.+|+ .|++|||.++. ...+. +.+.++++.++++++.++ ....||||
T Consensus 528 -~~-r~~i~~v~q~~~lf~-~ti~eNi~~~~---~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 528 -WL-RRQMGVVLQENVLFS-RSIRDNIALCN---PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred -HH-HHhCeEEccCCeehh-hhHHHHHhcCC---CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 22 336999999999997 59999998742 11233 335566666666554433 34689999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
||||++|||||++ +|++|||||||++||+.+++.+.+.|+++. ++ .|+|+|||+++.+.. |
T Consensus 598 q~qri~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~----------~t~i~itH~~~~~~~-~ 658 (694)
T TIGR01846 598 QRQRIAIARALVG-------NPRILIFDEATSALDYESEALIMRNMREIC-RG----------RTVIIIAHRLSTVRA-C 658 (694)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEeCChHHHHh-C
Confidence 9999999999997 599999999999999999999999999985 33 599999999999875 8
Q ss_pred CEEEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|+|++|++|++++.|+.+++.... ...++++
T Consensus 659 d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 689 (694)
T TIGR01846 659 DRIIVLEKGQIAESGRHEELLALQ-GLYARLW 689 (694)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHH
Confidence 999999999999999877776543 3444444
No 245
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.2e-48 Score=399.15 Aligned_cols=277 Identities=28% Similarity=0.428 Sum_probs=214.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.|+..+.... ........+.+|+......|+...... .. +
T Consensus 256 t~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-----------------~~--~ 311 (544)
T TIGR01842 256 TPGMMIAGSILVGRALAPIDGAIGGW-----KQFSGARQAYKRLNELLANYPSRDPAM-----------------PL--P 311 (544)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCccccCCC-----------------CC--C
Confidence 34455555555666677887776666 667888888999988887654321000 00 1
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
. ....|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++......
T Consensus 312 ~--~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~- 388 (544)
T TIGR01842 312 E--PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE- 388 (544)
T ss_pred C--CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH-
Confidence 1 1124999999999964 5799999999999999999999999999999999999999999999999988654322
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHH-----HHHHHHHc--CCCcccccCCCCCChHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISEL-----VKENLAAV--GLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSGGqrQRv 235 (352)
. .+.+++||||++.+|+. |++||+.++. ...+.++..+. +.+.++.+ |++....+....||||||||+
T Consensus 389 ~-~~~~i~~v~q~~~lf~~-ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 389 T-FGKHIGYLPQDVELFPG-TVAENIARFG---ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred H-HhhheEEecCCcccccc-cHHHHHhccC---CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 2 23469999999999985 9999998532 11233332221 12333344 444455556789999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||++ +|++|||||||++||+.++..+.+.|+++..++ .|+|++||+++.+. .||+|++
T Consensus 464 ~lARall~-------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~----------~tvi~ith~~~~~~-~~d~i~~ 525 (544)
T TIGR01842 464 ALARALYG-------DPKLVVLDEPNSNLDEEGEQALANAIKALKARG----------ITVVVITHRPSLLG-CVDKILV 525 (544)
T ss_pred HHHHHHhc-------CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC----------CEEEEEeCCHHHHH-hCCEEEE
Confidence 99999997 599999999999999999999999999987555 59999999999765 6899999
Q ss_pred EeCCeEEEeecccccc
Q 018638 316 LYEGKIVWQGMTHEFT 331 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~ 331 (352)
|++|++++.|+.+++.
T Consensus 526 l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 526 LQDGRIARFGERDEVL 541 (544)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999766653
No 246
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-48 Score=360.38 Aligned_cols=217 Identities=33% Similarity=0.552 Sum_probs=178.8
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +..++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT-LDSL-RRAIG 78 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC-HHHH-HhhEE
Confidence 47899999996 567999999999999999999999999999999999999999999999999875432 1122 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
|+||++.+|+ .||+||+.++... ....+..+ .+.+.++.+ +++...++.+.+|||||||||+|||||+.
T Consensus 79 ~~~q~~~~~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 79 VVPQDTVLFN-DTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred EECCCChhhc-chHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999886 6999999875321 12222111 122333333 45555677789999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|.++++ | .|||++||+++.+.. |||+++|++|++++
T Consensus 155 -------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~d~~~~l~~g~i~~ 215 (236)
T cd03253 155 -------NPPILLLDEATSALDTHTEREIQAALRDVSK-G----------RTTIVIAHRLSTIVN-ADKIIVLKDGRIVE 215 (236)
T ss_pred -------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHHh-CCEEEEEECCEEEe
Confidence 6999999999999999999999999999876 5 599999999999975 99999999999999
Q ss_pred eecccccccC
Q 018638 324 QGMTHEFTSS 333 (352)
Q Consensus 324 ~g~~~~~~~~ 333 (352)
.|+.+++...
T Consensus 216 ~~~~~~~~~~ 225 (236)
T cd03253 216 RGTHEELLAK 225 (236)
T ss_pred eCCHHHHhhc
Confidence 9987776543
No 247
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=400.43 Aligned_cols=221 Identities=21% Similarity=0.382 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR-SPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC-CHHHHHHCC
Confidence 45899999999874 389999999999999999999999999999999999999999999999987432 121112336
Q ss_pred EEEEecC---CCCCCCCCHHHHHHhhhhhc----C---C-CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHH
Q 018638 169 IGLVFQS---AALFDSLTVRENVGFLLYEN----S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 169 ig~v~Q~---~~l~~~lTV~eni~~~~~~~----~---~-~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva 236 (352)
|||+||+ +.+++.+||+||+.++.... . + .......+++.++++.+|+. +..++++.+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 9999998 46888899999998753210 0 1 12223345678899999997 7889999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+|||+++|
T Consensus 420 lAral~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 420 ISKWLCC-------CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG----------KVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred HHHHHhc-------CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEEEEE
Confidence 9999997 699999999999999999999999999998766 59999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|++++.++..+
T Consensus 483 ~~G~i~~~~~~~~ 495 (510)
T PRK09700 483 CEGRLTQILTNRD 495 (510)
T ss_pred ECCEEEEEecCcc
Confidence 9999999886634
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.6e-49 Score=364.38 Aligned_cols=216 Identities=33% Similarity=0.541 Sum_probs=178.1
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN-LRW-LRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC-HHH-HHhh
Confidence 478999999964 46999999999999999999999999999999999999999999999999864321 222 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
++|+||++.+++ .||+||+.++... ...++..+ .+.++++.+ ++....++.+.+|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999998887 6999999875321 11222111 122333333 555567788999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|++|||||||+|||+.++..+.+.|++++ +| .|||++||+++++. +||++++|++|++
T Consensus 155 ~~-------~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g----------~~vi~~sh~~~~~~-~~d~v~~l~~G~i 215 (238)
T cd03249 155 LR-------NPKILLLDEATSALDAESEKLVQEALDRAM-KG----------RTTIVIAHRLSTIR-NADLIAVLQNGQV 215 (238)
T ss_pred hc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHh-hCCEEEEEECCEE
Confidence 96 699999999999999999999999999986 55 59999999999997 7999999999999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+.+++..
T Consensus 216 ~~~~~~~~~~~ 226 (238)
T cd03249 216 VEQGTHDELMA 226 (238)
T ss_pred EEeCCHHHHhh
Confidence 99997776643
No 249
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.7e-48 Score=398.90 Aligned_cols=224 Identities=23% Similarity=0.386 Sum_probs=191.0
Q ss_pred cceEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhh
Q 018638 89 DVLIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 89 ~~~l~~~nls~~y---~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.++|+++|++++| +++.+|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... .....
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-NPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC-CHHHH
Confidence 4589999999999 346799999999999999999999999999999999999995 899999999987432 12122
Q ss_pred ccceEEEEecCC---CCCCCCCHHHHHHhhhhh-cC---CCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHH
Q 018638 165 SGLRIGLVFQSA---ALFDSLTVRENVGFLLYE-NS---KMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 165 ~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~---~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRva 236 (352)
.+.+|||+||++ .+++.+||++|+.++... .. ........+++.++++++++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 234699999996 588889999999875321 11 1223334566889999999974 689999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++|||+++|
T Consensus 414 la~al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 414 LAKMLLT-------NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG----------VAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred HHHHHhh-------CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEE
Confidence 9999997 699999999999999999999999999998776 59999999999999999999999
Q ss_pred eCCeEEEeeccccc
Q 018638 317 YEGKIVWQGMTHEF 330 (352)
Q Consensus 317 ~~G~iv~~g~~~~~ 330 (352)
++|+++..++.+++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 477 GEGKLKGDFVNHAL 490 (500)
T ss_pred ECCEEEEEEccccC
Confidence 99999988866543
No 250
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-49 Score=393.99 Aligned_cols=223 Identities=33% Similarity=0.536 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++++||+|+|++. ++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++..+..... +..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~--~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL--RET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH--HHH
Confidence 69999999999875 49999999999999999999999999999999999999999999999999876643322 235
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|++++|.+.+|. -|+++|+.+.. .+.+ .+.+.++++++||+++....| ..||||||||++|
T Consensus 414 i~vl~Qr~hlF~-~Tlr~NL~lA~---~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 414 ISVLTQRVHLFS-GTLRDNLRLAN---PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred HhhhccchHHHH-HHHHHHHhhcC---CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 999999999997 49999998842 2223 345778899999987666554 6899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||+|++| .+++||||||.|||+.++++++++|.+-.+ | +|+|||||++..++. ||||+||+
T Consensus 486 AR~LL~d-------apl~lLDEPTegLD~~TE~~vL~ll~~~~~-~----------kTll~vTHrL~~le~-~drIivl~ 546 (573)
T COG4987 486 ARALLHD-------APLWLLDEPTEGLDPITERQVLALLFEHAE-G----------KTLLMVTHRLRGLER-MDRIIVLD 546 (573)
T ss_pred HHHHHcC-------CCeEEecCCcccCChhhHHHHHHHHHHHhc-C----------CeEEEEecccccHhh-cCEEEEEE
Confidence 9999984 999999999999999999999999988655 3 499999999999886 59999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHhc
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+++++|..++++. .++...+++.
T Consensus 547 ~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 547 NGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred CCeeeecCCHHhhhc-cccHHHHHhc
Confidence 999999998888775 4566666653
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-48 Score=399.22 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=186.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ..... +.+++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~-~~~~~-~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL-SFEQL-QKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-CHHHH-HHHhc
Confidence 69999999999988899999999999999999999999999999999999999999999999765432 22222 23599
Q ss_pred EEecCCCC--C-C-----CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 171 LVFQSAAL--F-D-----SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 171 ~v~Q~~~l--~-~-----~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
|+||++.+ + + .+||++|+.+. .+..+++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 151 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM 151 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99998643 1 1 46888887542 122456788999999998899999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||+|||+.++..+.++|++++++| .|||+||||++.+.++||+|++|++|+++
T Consensus 152 ~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 152 S-------EPDLLILDEPFDGLDVASRQQLAELLASLHQSG----------ITLVLVLNRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred c-------CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC----------CeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999998766 59999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
..|+++++..
T Consensus 215 ~~~~~~~~~~ 224 (490)
T PRK10938 215 ETGEREEILQ 224 (490)
T ss_pred EeCCHHHHhc
Confidence 9998777643
No 252
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.3e-48 Score=359.47 Aligned_cols=202 Identities=33% Similarity=0.472 Sum_probs=177.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------------
Confidence 789999999999999999999999999999999999999999999999999999999999986421
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
..+...+++.+||+||+.+..... .....+..+++.++++.+++.+..++.+.+||||||||++|||||+. +
T Consensus 89 ~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~-------~ 160 (224)
T cd03220 89 LGLGGGFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL-------E 160 (224)
T ss_pred hcccccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc-------C
Confidence 011223456789999998865322 23344455667889999999999999999999999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|++|||||||++||+.++..+.+.|+++++++ .|||++||+++++..+||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQG----------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999997765 59999999999999999999999999998764
No 253
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-48 Score=372.30 Aligned_cols=220 Identities=27% Similarity=0.464 Sum_probs=189.0
Q ss_pred EEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++| ++..+|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++... ..... +.+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~-~~~~l-r~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV-PLQKW-RKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-CHHHH-hhhE
Confidence 8899999999 45679999999999999999999999999999999999998 789999999987543 22222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCC-----------CChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----------LSGGqrQRvaIA 238 (352)
+|+||++.+|+ .||++|+.... .... +++.++++.+||.++.+++|.. ||||||||++||
T Consensus 80 ~~v~q~~~lf~-~tv~~nl~~~~----~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 80 GVIPQKVFIFS-GTFRKNLDPYG----KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred EEECCCcccch-hhHHHHhhhcc----CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 99999999998 59999996321 1222 3467788999999999999987 999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|+||||||||++||+.++..+.+.|+++.+ + +|||+|||+++++.. ||||++|++
T Consensus 151 Rall~-------~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~i~~-~dri~vl~~ 211 (275)
T cd03289 151 RSVLS-------KAKILLLDEPSAHLDPITYQVIRKTLKQAFA-D----------CTVILSEHRIEAMLE-CQRFLVIEE 211 (275)
T ss_pred HHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEECCHHHHHh-CCEEEEecC
Confidence 99997 6999999999999999999999999998743 4 599999999999876 999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++++.|+++++... ..+..+++.
T Consensus 212 G~i~~~g~~~~l~~~-~~~~~~~~~ 235 (275)
T cd03289 212 NKVRQYDSIQKLLNE-KSHFKQAIS 235 (275)
T ss_pred CeEeecCCHHHHhhC-cHHHHHHHh
Confidence 999999999998763 355666654
No 254
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-48 Score=385.03 Aligned_cols=234 Identities=28% Similarity=0.410 Sum_probs=208.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
+.|++++++|.|++..++++|||+|++||++||+|.||||||||+++|.|+++||+|+|+++|+++.- .++.+..+..|
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~-~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRI-KSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEecc-CCHHHHHHcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999998754 45555666789
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhh--cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYE--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+|+|++.|+|.+||.|||.++... ....+.++..++++++.+++||+-..++++.+||-||||||.|-+||.+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr---- 157 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR---- 157 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc----
Confidence 9999999999999999999998642 1234677888899999999999988999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+-|-|...+++++.|+.|+++| +|||+|||.++++.++|||+.||++|+++...++
T Consensus 158 ---~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G----------~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~ 224 (501)
T COG3845 158 ---GARLLILDEPTAVLTPQEADELFEILRRLAAEG----------KTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224 (501)
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC
Confidence 599999999999999999999999999999998 5999999999999999999999999998776652
Q ss_pred -cccccCCcHHHHHHhcC
Q 018638 328 -HEFTSSSNPIVQQFASG 344 (352)
Q Consensus 328 -~~~~~~~~~~~~~~~~~ 344 (352)
.+. ....+.++.-|
T Consensus 225 ~~~~---t~~ela~lMvG 239 (501)
T COG3845 225 VAET---TEEELAELMVG 239 (501)
T ss_pred CCCC---CHHHHHHHhcC
Confidence 221 23444555554
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-48 Score=353.37 Aligned_cols=198 Identities=31% Similarity=0.456 Sum_probs=176.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++... . .. .+.+++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~-~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-DS-IARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-HH-hhhheEE
Confidence 5789999999988999999999999999999999999999999999999999999999999886432 1 11 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+++.+|++||+.+... .. ..+++.++++.+++.++.++++.+||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~----~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~-------~ 143 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHA----DH---SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS-------G 143 (201)
T ss_pred eccccccCCCcCHHHHHHhhcc----cc---cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987431 11 23457889999999988899999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++|||||||++||+.++..+.++|+++.++| .|+|++|||...+..+|++++++
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARG----------GMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999987766 59999999999999999999887
No 256
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6e-48 Score=400.31 Aligned_cols=284 Identities=26% Similarity=0.400 Sum_probs=214.6
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
.....+...+..++.++..+.+.. ........+.+|+......|.... ..... . ..+.
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~-~~~~~-------------~---~~~~ 332 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVW-----GELQRAAGAAERLIELLQAEPDIK-APAHP-------------K---TLPV 332 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcCC-CCCCC-------------c---cCCc
Confidence 344444444555566776666555 566777888888888776653211 00000 0 0000
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.....|+++||+++|++ +.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.... ...
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~-~~~ 411 (576)
T TIGR02204 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD-PAE 411 (576)
T ss_pred CCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-HHH
Confidence 11234999999999964 56999999999999999999999999999999999999999999999999986543 222
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqr 232 (352)
. +.+|+|+||++.+|+ .|++|||.++. ...+. +++.++++.+|+.+..++. ...||||||
T Consensus 412 ~-~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~---~~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 412 L-RARMALVPQDPVLFA-ASVMENIRYGR---PDATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred H-HHhceEEccCCcccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2 236999999999997 59999998743 11222 3466677777775544433 357999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++||||+++ +|++|||||||++||+.+++.+++.|+++.+ + +|+|+|||+++.+. .|||
T Consensus 483 Qrl~laRal~~-------~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~----------~t~IiitH~~~~~~-~~d~ 543 (576)
T TIGR02204 483 QRIAIARAILK-------DAPILLLDEATSALDAESEQLVQQALETLMK-G----------RTTLIIAHRLATVL-KADR 543 (576)
T ss_pred HHHHHHHHHHh-------CCCeEEEeCcccccCHHHHHHHHHHHHHHhC-C----------CEEEEEecchHHHH-hCCE
Confidence 99999999997 5999999999999999999999999999854 3 59999999998876 5899
Q ss_pred EEEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|++|++++.|+.+++... ++..++++
T Consensus 544 vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~ 572 (576)
T TIGR02204 544 IVVMDQGRIVAQGTHAELIAK-GGLYARLA 572 (576)
T ss_pred EEEEECCEEEeeecHHHHHHc-CChHHHHH
Confidence 999999999999987776543 33334443
No 257
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-49 Score=424.58 Aligned_cols=215 Identities=39% Similarity=0.615 Sum_probs=187.0
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+|+|+.+ .+|+|+||+|++|+.+||||||||||||++++|.+++.|++|+|++||.|+..+.. +|++ .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~-~~lr-~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL-KWLR-S 427 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch-HHHH-h
Confidence 49999999999865 59999999999999999999999999999999999999999999999999887643 3443 3
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+||.|+|+|.||. .||+|||.|+. ++..++++.++++..+..++..+.| .+||||||||||
T Consensus 428 ~iglV~QePvlF~-~tI~eNI~~G~-------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIA 499 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFA-TTIRENIRYGK-------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIA 499 (1228)
T ss_pred hcCeeeechhhhc-ccHHHHHhcCC-------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHH
Confidence 7999999999996 79999999964 1223445667777777666655554 579999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+|||||||||+||+++++.+++.|.++.+ | .|.|+|+|+++++++ ||+|++|
T Consensus 500 IARalv~-------~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-g----------rTTivVaHRLStIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 500 IARALVR-------NPKILLLDEATSALDAESERVVQEALDKASK-G----------RTTIVVAHRLSTIRN-ADKIAVM 560 (1228)
T ss_pred HHHHHHh-------CCCEEEecCcccccCHHHHHHHHHHHHHhhc-C----------CeEEEEeeehhhhhc-cCEEEEE
Confidence 9999998 5999999999999999999999999988754 4 499999999999998 7999999
Q ss_pred eCCeEEEeecccccccCC
Q 018638 317 YEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~ 334 (352)
++|+|++.|+.+|+....
T Consensus 561 ~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ECCEEEEecCHHHHHhcc
Confidence 999999999888876544
No 258
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-48 Score=342.63 Aligned_cols=173 Identities=42% Similarity=0.750 Sum_probs=158.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEEE
Confidence 47899999998888999999999999999999999999999999999999999999999999875421 22 2346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+||++.+|+.+|+.||+. ||||||||++|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~~~-------------------------------------LS~G~~qrv~laral~~-------~ 113 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-------------------------------------LSGGMKQRLALAQALLH-------D 113 (173)
T ss_pred EecCCccccCCcHHHHhh-------------------------------------cCHHHHHHHHHHHHHHc-------C
Confidence 999999998899999973 99999999999999996 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++|||||||++||+.++..+.++|++++++| .|+|++|||++++..+||++++|++|++
T Consensus 114 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKEG----------KTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999998776 5999999999999999999999999974
No 259
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.2e-48 Score=357.51 Aligned_cols=210 Identities=28% Similarity=0.477 Sum_probs=177.4
Q ss_pred CCcceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 87 DGDVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
....+|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~ 85 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE-HKY 85 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC-HHH
Confidence 34568999999999975 36999999999999999999999999999999999999999999999998764321 111
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHH-----HHHHHHHHHHc--CCCcccccCCCCCChHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRva 236 (352)
.+.+++|+||++.+|+ .||+||+.++... ....+. ...+.++++.+ |++...++++.+|||||||||+
T Consensus 86 -~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 -LHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred -HHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 2336999999998887 6999999875421 111111 12246778888 8888889999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+.++..+.+.|+++.+ + .|+|++|||++++.. ||+|++|
T Consensus 161 laral~~-------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i~~l 221 (226)
T cd03248 161 IARALIR-------NPQVLILDEATSALDAESEQQVQQALYDWPE-R----------RTVLVIAHRLSTVER-ADQILVL 221 (226)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEECCHHHHHh-CCEEEEe
Confidence 9999997 6999999999999999999999999999865 3 499999999999965 9999999
Q ss_pred eCCeE
Q 018638 317 YEGKI 321 (352)
Q Consensus 317 ~~G~i 321 (352)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99974
No 260
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-47 Score=400.17 Aligned_cols=276 Identities=24% Similarity=0.381 Sum_probs=209.2
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
...+.+...+..++.++..++... ........+.+++.+....|+........ ....
T Consensus 273 g~l~a~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~ri~~~~~~~~~~~~~~~~------------------~~~~ 329 (585)
T TIGR01192 273 GEVIAFIGFANLLIGRLDQMSGFI-----TQIFEARAKLEDFFDLEDSVFQREEPADA------------------PELP 329 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccCCccC------------------CCCC
Confidence 334444444555566776666555 45566777788887776655321100000 0000
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.....|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... .
T Consensus 330 ~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~- 407 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES-L- 407 (585)
T ss_pred CCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH-H-
Confidence 11224999999999975 56999999999999999999999999999999999999999999999999876543222 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcccccCCCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~~~~LSGGqrQR 234 (352)
+.+++||+|++.+|+ .|++|||.++. ...+.++ +.++++.++ ++.........||||||||
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGR---EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 346999999999997 59999998853 1123333 333344433 3444455667899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|++|||||||++||+.+++.+.+.|.++.+ + .|+|+|||+++.+.. ||+|+
T Consensus 480 l~lARall~-------~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvI~isH~~~~~~~-~d~i~ 540 (585)
T TIGR01192 480 LAIARAILK-------NAPILVLDEATSALDVETEARVKNAIDALRK-N----------RTTFIIAHRLSTVRN-ADLVL 540 (585)
T ss_pred HHHHHHHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcChHHHHc-CCEEE
Confidence 999999997 5999999999999999999999999998854 4 599999999999865 89999
Q ss_pred EEeCCeEEEeecccccccCC
Q 018638 315 FLYEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~~~~~ 334 (352)
+|++|++++.|+.+++....
T Consensus 541 ~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred EEECCEEEEECCHHHHHHCC
Confidence 99999999999877776543
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-48 Score=343.02 Aligned_cols=177 Identities=46% Similarity=0.751 Sum_probs=159.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........+.+++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999875432101122346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+|+.+|++||+.+. ||||||||++|||||+. +
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------------------------lS~G~~qr~~la~al~~-------~ 118 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------------------------LSGGQQQRVALARALAM-------D 118 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------------------------CCHHHHHHHHHHHHHHC-------C
Confidence 99999998889999998652 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+++||||||+|||+.++..+.++|++++++ + .|+|++|||++++..+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~----------~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLG----------ITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999876 5 599999999999999999999999985
No 262
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-47 Score=398.47 Aligned_cols=274 Identities=19% Similarity=0.280 Sum_probs=210.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
....+.+...+..++.|+..++... ........+.+|+......|+...... . . .+
T Consensus 253 ~g~l~a~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~ll~~~~~~~~~~-~---------------~---~~ 308 (569)
T PRK10789 253 LGQLTSFVMYLGLMIWPMLALAWMF-----NIVERGSAAYSRIRAMLAEAPVVKDGS-E---------------P---VP 308 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCC-C---------------C---CC
Confidence 3444445555555667776665555 566667778888888776653211000 0 0 00
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.....|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++...... .
T Consensus 309 -~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~-~ 386 (569)
T PRK10789 309 -EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD-S 386 (569)
T ss_pred -CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHH-H
Confidence 11123999999999964 5699999999999999999999999999999999999999999999999987654322 2
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-----------cCCCCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSGGqr 232 (352)
. +.+|+|++|++.+|+ .|++|||.++. ...+.+ ++.++++.++++++.. .....||||||
T Consensus 387 ~-~~~i~~v~q~~~lf~-~ti~~Ni~~~~---~~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 387 W-RSRLAVVSQTPFLFS-DTVANNIALGR---PDATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred H-HhheEEEccCCeecc-ccHHHHHhcCC---CCCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 2 336999999999997 49999998753 112332 3455666666654433 34468999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
||++|||||++ +|++|||||||++||+.++..+++.|+++. ++ .|+|+|||+++.+.. ||+
T Consensus 458 qRi~lARall~-------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~----------~tii~itH~~~~~~~-~d~ 518 (569)
T PRK10789 458 QRISIARALLL-------NAEILILDDALSAVDGRTEHQILHNLRQWG-EG----------RTVIISAHRLSALTE-ASE 518 (569)
T ss_pred HHHHHHHHHhc-------CCCEEEEECccccCCHHHHHHHHHHHHHHh-CC----------CEEEEEecchhHHHc-CCE
Confidence 99999999997 599999999999999999999999999875 34 599999999998865 899
Q ss_pred EEEEeCCeEEEeecccccccC
Q 018638 313 LIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~ 333 (352)
|++|++|++++.|+.+++...
T Consensus 519 i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred EEEEeCCEEEEecCHHHHHHc
Confidence 999999999999987776543
No 263
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-47 Score=343.32 Aligned_cols=177 Identities=31% Similarity=0.523 Sum_probs=158.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+.++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS-PRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC-HHHHHhCCe
Confidence 579999999999 899999999999999999999999999999999999999999999999876432 122223469
Q ss_pred EEEecCC---CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 170 GLVFQSA---ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 170 g~v~Q~~---~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+|+||++ .+++.+|++||+.+... ||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------LS~G~~qrl~la~al~~--- 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------LSGGNQQKVVLARWLAR--- 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------cCHHHHHHHHHHHHHcc---
Confidence 9999995 57888999999977420 99999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|+++++++ .|+|++||+++++.++||++++|++|++
T Consensus 122 ----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 ----DPRVLILDEPTRGVDVGAKAEIYRLIRELADAG----------KAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 699999999999999999999999999997665 5999999999999999999999999974
No 264
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.2e-48 Score=353.06 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=173.8
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .... +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i 80 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG-LHDL-RSRI 80 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC-HHHH-hhhE
Confidence 789999999964 47999999999999999999999999999999999999999999999999865422 2222 3469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRvaIA 238 (352)
+|+||++.+++ .|++||+.+.. .... +++.++++.+++.+.. ++.+.+||||||||++||
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFG----EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCC----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 99999999886 69999996531 1222 2345566666665544 468899999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++++.. ||++++|++
T Consensus 152 ral~~-------~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~i~~l~~ 212 (221)
T cd03244 152 RALLR-------KSKILVLDEATASVDPETDALIQKTIREAFK-D----------CTVLTIAHRLDTIID-SDRILVLDK 212 (221)
T ss_pred HHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEeCCHHHHhh-CCEEEEEEC
Confidence 99997 6999999999999999999999999999864 3 499999999999976 899999999
Q ss_pred CeEEEeec
Q 018638 319 GKIVWQGM 326 (352)
Q Consensus 319 G~iv~~g~ 326 (352)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 99998774
No 265
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-48 Score=361.42 Aligned_cols=199 Identities=34% Similarity=0.589 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
++++++||+|.|.. ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+|+|+++..+
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc--
Confidence 57999999999952 3799999999999999999999999999999999999999999999999875432
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
. .++..+++.++|+.+|+. +.++|+|++|||||||||+|||
T Consensus 81 ---------~-----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IAR 122 (268)
T COG4608 81 ---------S-----------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIAR 122 (268)
T ss_pred ---------c-----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHH
Confidence 1 234456789999999996 5899999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+++++|||+|+||...+.+++++|.+++++-+ .|+++||||++.+..+||||+||+.|
T Consensus 123 ALal-------~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~---------lt~lFIsHDL~vv~~isdri~VMy~G 186 (268)
T COG4608 123 ALAL-------NPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---------LTYLFISHDLSVVRYISDRIAVMYLG 186 (268)
T ss_pred HHhh-------CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC---------CeEEEEEEEHHhhhhhcccEEEEecC
Confidence 9985 7999999999999999999999999999987631 69999999999999999999999999
Q ss_pred eEEEeecccccc-cCCcHHHHHHhcC
Q 018638 320 KIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 320 ~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
+|++.|++++++ ++.||+++.++..
T Consensus 187 ~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 187 KIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred ceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 999999999865 6789999999875
No 266
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=391.60 Aligned_cols=220 Identities=25% Similarity=0.404 Sum_probs=189.0
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~-~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR-SPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHHHHCC
Confidence 45899999995 379999999999999999999999999999999999999999999999987543 221222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhhhhc-C---C-CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFLLYEN-S---K-MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~~~~~-~---~-~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
||||||++ .+++.+||.||+.++.... . + ....+..+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999996 5788899999998753211 0 1 22333456688999999995 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||+|||+.++..+.++|+++.++| .|||++|||++++..+||||++|++|
T Consensus 409 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g----------~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 409 GLMT-------RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG----------LSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred HHhh-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 9997 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeecccccc
Q 018638 320 KIVWQGMTHEFT 331 (352)
Q Consensus 320 ~iv~~g~~~~~~ 331 (352)
+++..|+++++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999887753
No 267
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-47 Score=361.12 Aligned_cols=228 Identities=22% Similarity=0.340 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.... ... .+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-~~~-~~~ 95 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-LHT-LRS 95 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-HHH-Hhh
Confidence 45999999999986 57999999999999999999999999999999999999999999999999875432 112 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArA 240 (352)
+|+|+||++.+|+ .|+++|+.... . .......+ .+.+.++.+ +++...++.+.+||||||||++||||
T Consensus 96 ~i~~v~q~~~l~~-~tv~~nl~~~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 96 RLSIILQDPILFS-GSIRFNLDPEC---K-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hEEEECCCCcccc-cHHHHhcCcCC---C-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 6999999999887 59999985421 0 11111111 123344444 55556667778999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+. +|++|||||||++||+.++..+.++|+++.+ + .|||++||+++.+.. ||||++|++|+
T Consensus 171 l~~-------~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~----------~tiii~sh~~~~~~~-~dri~~l~~G~ 231 (257)
T cd03288 171 FVR-------KSSILIMDEATASIDMATENILQKVVMTAFA-D----------RTVVTIAHRVSTILD-ADLVLVLSRGI 231 (257)
T ss_pred Hhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecChHHHHh-CCEEEEEECCE
Confidence 997 6999999999999999999999999998753 4 599999999999986 99999999999
Q ss_pred EEEeecccccccCCcHHHHHHhc
Q 018638 321 IVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 321 iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+++.|+++++........++++.
T Consensus 232 i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 232 LVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred EEEeCCHHHHHhccchHHHHHHh
Confidence 99999888876554555565554
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-47 Score=348.16 Aligned_cols=199 Identities=30% Similarity=0.421 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. .+.+++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~--~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD---PD--VAEACH 76 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc---hh--hHhhcE
Confidence 6999999999998889999999999999999999999999999999999999999999999987531 11 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+|+.||+.+...... .. .+.+.++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~------- 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLG-GE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS------- 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcC-Cc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc-------
Confidence 99999888888999999987542221 11 2347889999999888899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+|++|||||||++||+.++..+.++|+++.++| .|||++||+++++.. |+++-+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQG----------GIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCchhhcc--CcEEeecC
Confidence 699999999999999999999999999987766 599999999999986 89887744
No 269
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.2e-47 Score=344.50 Aligned_cols=183 Identities=37% Similarity=0.569 Sum_probs=163.7
Q ss_pred eEEEEeEEEEeCC------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSFGE------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y~~------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~ 162 (352)
.|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~----~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----R 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch----H
Confidence 4899999999975 67999999999999999999999999999999999999 9999999999998642 1
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
. .+.+++|+||++.+|+.+|++||+.+... .. +||||||||++|||||+
T Consensus 79 ~-~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------~~-----------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 79 S-FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------LR-----------------GLSGGERKRVSIALELV 127 (194)
T ss_pred h-hhheEEEccCcccCCCCCcHHHHHHHHHH-------------hc-----------------cCCHHHHHHHHHHHHHH
Confidence 1 23369999999999988999999976421 00 89999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~i 321 (352)
. +|++|||||||++||+.++..+.++|+++++++ .|+|++|||++ ++..+||++++|++|++
T Consensus 128 ~-------~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 128 S-------NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG----------RTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred c-------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 7 599999999999999999999999999997666 59999999996 78889999999999999
Q ss_pred EEee
Q 018638 322 VWQG 325 (352)
Q Consensus 322 v~~g 325 (352)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8654
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.5e-47 Score=346.48 Aligned_cols=200 Identities=26% Similarity=0.432 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~-~~ 82 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP-LEDL-RS 82 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-HHHH-Hh
Confidence 34999999999975 47999999999999999999999999999999999999999999999999864321 2222 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+|+||++.+|+ .|++||+.+.. ....+ .+.++++ .++.+.+||||||||++|||||+.
T Consensus 83 ~i~~v~q~~~~~~-~tv~~~l~~~~----~~~~~----~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~---- 142 (207)
T cd03369 83 SLTIIPQDPTLFS-GTIRSNLDPFD----EYSDE----EIYGALR-------VSEGGLNLSQGQRQLLCLARALLK---- 142 (207)
T ss_pred hEEEEecCCcccC-ccHHHHhcccC----CCCHH----HHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhh----
Confidence 6999999999887 59999997531 12222 2334443 467899999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|+++. ++ .|+|++||+++++.. ||++++|++|++++.|+
T Consensus 143 ---~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 ---RPRVLVLDEATASIDYATDALIQKTIREEF-TN----------STILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 699999999999999999999999999985 34 599999999999976 89999999999998775
No 271
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-48 Score=386.26 Aligned_cols=220 Identities=33% Similarity=0.518 Sum_probs=190.7
Q ss_pred EEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++||+++|+.++ +|+++||+|++||.+||+|+|||||||++|+|.++.+ ++|+|++||+++....... .|+-||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S--lR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES--LRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH--hhhhee
Confidence 99999999998766 9999999999999999999999999999999999999 9999999999987653322 233599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALAR 239 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIAr 239 (352)
|||||..||++ ||.+||.++.. ..+ .++|.++++++|+++...+.| ..|||||||||+|||
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999985 99999998641 122 345788899999988777776 469999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
|+++| |+|+++|||||+||.++++++++.+.+.. .+ +|+|+|.||++++.. ||+|++|++|
T Consensus 501 a~lKd-------a~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~----------rTvI~IvH~l~ll~~-~DkI~~l~nG 561 (591)
T KOG0057|consen 501 AFLKD-------APILLLDEATSALDSETEREILDMIMDVM-SG----------RTVIMIVHRLDLLKD-FDKIIVLDNG 561 (591)
T ss_pred HHhcC-------CCeEEecCcccccchhhHHHHHHHHHHhc-CC----------CeEEEEEecchhHhc-CCEEEEEECC
Confidence 99984 99999999999999999999999999843 33 599999999999987 5999999999
Q ss_pred eEEEeecccccccCCcHHHHHHh
Q 018638 320 KIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 320 ~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++.+.|+.+|++. .+....++.
T Consensus 562 ~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 562 TVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred eeEEeccHHHHhh-hhhHHHHHh
Confidence 9999998888876 444444444
No 272
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-47 Score=370.38 Aligned_cols=240 Identities=28% Similarity=0.460 Sum_probs=215.1
Q ss_pred cceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CceEEEECCEeCCCCC
Q 018638 89 DVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-----DKGEVYIRGRKRAGLI 159 (352)
Q Consensus 89 ~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-----~~G~I~i~G~~~~~~~ 159 (352)
.++|+++|+++.|. ...++++|||+|.+||.+||||.||||||-..+.|+||++- -+|+|.|+|+++....
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999996 57899999999999999999999999999999999999975 3799999999986643
Q ss_pred Chhh--hccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---cccccCCCCCChHHH
Q 018638 160 SDEE--ISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK---GVEDRLPSELSGGMK 232 (352)
Q Consensus 160 ~~~~--~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~---~~~~~~~~~LSGGqr 232 (352)
.... .+..+|++|||+| .|.|-.|+...|...+..+.+.+.++.++++.++|+.+|+. ..++.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 2221 2233699999998 68888899999999888888889999999999999999995 367899999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|||.||+||++ +|++||.||||++||...+.+++++|++|.++-+ .++++||||+..+.++|||
T Consensus 164 QRVMIAMALan-------~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g---------Ma~lfITHDL~iVr~~ADr 227 (534)
T COG4172 164 QRVMIAMALAN-------EPDLLIADEPTTALDVTVQAQILDLLKELQAELG---------MAILFITHDLGIVRKFADR 227 (534)
T ss_pred hHHHHHHHHcC-------CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC---------cEEEEEeccHHHHHHhhhh
Confidence 99999999986 6999999999999999999999999999987621 6999999999999999999
Q ss_pred EEEEeCCeEEEeecccccc-cCCcHHHHHHhcC
Q 018638 313 LIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASG 344 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~ 344 (352)
|+||.+|++++.|++++++ .+.|+|++.++..
T Consensus 228 V~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 228 VYVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred EEEEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 9999999999999999866 6789999999875
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.9e-47 Score=344.96 Aligned_cols=197 Identities=35% Similarity=0.516 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. . .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~-~-~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ-RD-E-PHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-hH-H-hhhheEE
Confidence 5789999999999999999999999999999999999999999999999999999999999986543 11 1 2336999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
++|++.+++.+|+.||+.+...... . + .+++.++++.+++.++.++++.+|||||||||+|||||+. +
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~--~-~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~-------~ 145 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHG--G-A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS-------R 145 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcC--C-c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc-------C
Confidence 9999999888999999987643221 1 1 2357789999999999999999999999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|++|||||||++||+.++..+.++|++++++| .|+|++||+...+. |+|++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sH~~~~~~--~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARG----------GIVLLTTHQDLGLV--EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEccccccc--ceEEee
Confidence 99999999999999999999999999997766 59999999986654 577764
No 274
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.1e-47 Score=345.19 Aligned_cols=188 Identities=32% Similarity=0.564 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++||+++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|+++.... .....+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-PEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC-HHHHhhCcE
Confidence 4789999999988899999999999999999999999999999999999 4799999999999876532 222223359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++..++++++ ++.+.+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~~~~~~l--------------------------------~~~~~~LS~G~~qrv~laral~~------ 121 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL--------------------------------RYVNEGFSGGEKKRNEILQLLLL------ 121 (200)
T ss_pred EEeecChhhccCccHHHHH--------------------------------hhccccCCHHHHHHHHHHHHHhc------
Confidence 9999999999888887776 12236899999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh-hcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~-~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+.++..+.++|+++++++ .|||++||+++.+.. +||++++|++|++++.| +.
T Consensus 122 -~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~----------~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~ 189 (200)
T cd03217 122 -EPDLAILDEPDSGLDIDALRLVAEVINKLREEG----------KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DK 189 (200)
T ss_pred -CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cH
Confidence 699999999999999999999999999997765 599999999999988 79999999999999998 44
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
++
T Consensus 190 ~~ 191 (200)
T cd03217 190 EL 191 (200)
T ss_pred HH
Confidence 43
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-47 Score=346.19 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=172.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+.+++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~-~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCT-YQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHH-HHhheE
Confidence 58999999999988899999999999999999999999999999999999999999999999876431 111 233699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+||+||+.++.... .. ...+.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~----~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~------- 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFS----PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS------- 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcC----cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc-------
Confidence 9999999988899999998864211 11 2357889999999888889999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|++|||||||++||+.++..+.++|+++++++ .|||++||+.+.+.. ||.-+
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKG----------GAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCchhccc-cchhh
Confidence 699999999999999999999999999987666 599999999998866 67654
No 276
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-47 Score=342.96 Aligned_cols=182 Identities=30% Similarity=0.487 Sum_probs=161.9
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNF 77 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHh
Confidence 5899999999974 67999999999999999999999999999999999986 489999999999863 111
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+++|++|++.+|+.+|++||+.+... ++ +|||||||||+|||||+.
T Consensus 78 -~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------------~~-------------~LSgGe~qrv~la~al~~- 125 (192)
T cd03232 78 -QRSTGYVEQQDVHSPNLTVREALRFSAL-----------------LR-------------GLSVEQRKRLTIGVELAA- 125 (192)
T ss_pred -hhceEEecccCccccCCcHHHHHHHHHH-----------------Hh-------------cCCHHHhHHHHHHHHHhc-
Confidence 2369999999999988999999987421 00 899999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeC-CeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYE-GKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~-G~iv 322 (352)
+|++|||||||++||+.++..+++.|++++++| .|+|++||+++ .+..+|||+++|++ |+++
T Consensus 126 ------~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 126 ------KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG----------QAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred ------CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcC----------CEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 699999999999999999999999999997665 59999999998 57889999999999 9998
Q ss_pred Eee
Q 018638 323 WQG 325 (352)
Q Consensus 323 ~~g 325 (352)
+.|
T Consensus 190 ~~g 192 (192)
T cd03232 190 YFG 192 (192)
T ss_pred eCC
Confidence 764
No 277
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-47 Score=344.57 Aligned_cols=192 Identities=28% Similarity=0.416 Sum_probs=165.4
Q ss_pred eEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCChhh
Q 018638 91 LIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 91 ~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~~~~ 163 (352)
.+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~- 79 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--E- 79 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--h-
Confidence 478999999995 4579999999999999999999999999999999999999 89999999999875421 1
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+.+++|+||++.+|+.+||+||+.+.... . .++++.+||||||||++|||||+.
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------~-----------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRC-------------K-----------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhh-------------c-----------cccchhhCCHHHHHHHHHHHHHhh
Confidence 1234699999999999989999999874310 0 567889999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE-EEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV-VVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI-ivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|++|||||||++||+.+++.++++|++++++++ .|+| +++|+.+++.++||++++|++|+++
T Consensus 136 -------~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~---------~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 136 -------RASVLCWDNSTRGLDSSTALEILKCIRTMADVLK---------TTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC---------CEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 5999999999999999999999999999976521 3555 4566778999999999999999998
Q ss_pred Eee
Q 018638 323 WQG 325 (352)
Q Consensus 323 ~~g 325 (352)
..|
T Consensus 200 ~~g 202 (202)
T cd03233 200 YYG 202 (202)
T ss_pred ecC
Confidence 754
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-47 Score=389.88 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+.++++|+++. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR-SPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC-CHHHHHhCC
Confidence 457999999842 489999999999999999999999999999999999999999999999986432 222222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhhhhhcC---C--CCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFLLYENS---K--MRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~~~~~~---~--~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
|+|+||++ .+|+.+|++||+.++..... + .......+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999996 48888999999987542110 1 12223345678899999994 6889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+||||||||+|||+.++..++++|+++.++| .|||+||||++++.++|||+++|++|
T Consensus 410 al~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g----------~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 410 WLSE-------DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG----------VAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHcc-------CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHhhCCEEEEEECC
Confidence 9996 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeecccccc
Q 018638 320 KIVWQGMTHEFT 331 (352)
Q Consensus 320 ~iv~~g~~~~~~ 331 (352)
++++.|+++++.
T Consensus 473 ~i~~~~~~~~~~ 484 (501)
T PRK11288 473 RIAGELAREQAT 484 (501)
T ss_pred EEEEEEccccCC
Confidence 999999887654
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.1e-47 Score=341.39 Aligned_cols=179 Identities=41% Similarity=0.680 Sum_probs=160.7
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +..++|+
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~-~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKEL-ARKIAYV 78 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHH-HHHHhHH
Confidence 4789999999888999999999999999999999999999999999999999999999999875432 2221 2258888
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
|| +++.+|+.+..++.+.+||||||||++|||||+. +|
T Consensus 79 ~q-----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~-------~p 116 (180)
T cd03214 79 PQ-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ-------EP 116 (180)
T ss_pred HH-----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc-------CC
Confidence 88 6777888888889999999999999999999997 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+++||||||++||+.++..+.++|++++++ + .|+|++||+++++.++||++++|++|++++.|
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~----------~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERG----------KTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999776 5 59999999999999999999999999997653
No 280
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=355.99 Aligned_cols=221 Identities=23% Similarity=0.363 Sum_probs=189.9
Q ss_pred eEEEEeEEEEeCC--------------------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 91 LIDCRNVYKSFGE--------------------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 91 ~l~~~nls~~y~~--------------------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
.|+++||+|.|.. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4788888888732 34899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH
Q 018638 151 RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (352)
Q Consensus 151 ~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG 230 (352)
+|+ +++++|++.+++.+|+.+|+.+..... +...++..+.+.++++.+++.+..++.+.+||||
T Consensus 84 ~g~---------------~~~~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (264)
T PRK13546 84 NGE---------------VSVIAISAGLSGQLTGIENIEFKMLCM-GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147 (264)
T ss_pred CCE---------------EeEEecccCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence 884 356778877777899999998754322 2345555666778899999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
|||||+|||||+. +|++|||||||+|||+.++..+.+.|.+++++| .|||++||+++++..+|
T Consensus 148 q~qrv~Laral~~-------~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g----------~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 148 MRAKLGFSINITV-------NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN----------KTIFFVSHNLGQVRQFC 210 (264)
T ss_pred HHHHHHHHHHHhh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHHHHHc
Confidence 9999999999997 599999999999999999999999999997666 59999999999999999
Q ss_pred CEEEEEeCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
|+|++|++|++++.|+.+++..........|...
T Consensus 211 d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 244 (264)
T PRK13546 211 TKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKK 244 (264)
T ss_pred CEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHhc
Confidence 9999999999999998887765444455555543
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4e-47 Score=337.62 Aligned_cols=171 Identities=36% Similarity=0.635 Sum_probs=154.0
Q ss_pred EEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ... .+.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-PNE-LGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC-HHH-HHhhe
Confidence 478999999975 56999999999999999999999999999999999999999999999999875432 222 23469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|++|++.+|+ .||+||+ ||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l--------------------------------------LS~G~~qrv~la~al~~------ 113 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI--------------------------------------LSGGQRQRLGLARALYG------ 113 (173)
T ss_pred EEECCCCcccc-CcHHHHC--------------------------------------cCHHHHHHHHHHHHHhc------
Confidence 99999998887 5999997 99999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..+.++|++++++| .|+|++|||++++. .||++++|++|++
T Consensus 114 -~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 114 -NPRILVLDEPNSHLDVEGERALNQAIAALKAAG----------ATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred -CCCEEEEECCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 699999999999999999999999999997766 59999999999884 7999999999974
No 282
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.5e-47 Score=429.51 Aligned_cols=221 Identities=24% Similarity=0.397 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+.+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .... .+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~--~~~~-~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT--NISD-VH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc--hHHH-Hh
Confidence 457999999999985 579999999999999999999999999999999999999999999999998743 1111 23
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++|||+||++.+++.+||+||+.+....+ +.+.++.++.+.++++.+||.++.++++++|||||||||+||+||+.
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~-g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~--- 2087 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG--- 2087 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc---
Confidence 46999999999999999999998865332 34455566778899999999999999999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|+||||||||+||||.+++.++++|++++++| +|||++||+++++..+||||++|++|+++..|+
T Consensus 2088 ----~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g----------~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2088 ----CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG----------RAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred ----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 699999999999999999999999999998776 599999999999999999999999999999998
Q ss_pred cccc
Q 018638 327 THEF 330 (352)
Q Consensus 327 ~~~~ 330 (352)
++++
T Consensus 2154 ~q~L 2157 (2272)
T TIGR01257 2154 IQHL 2157 (2272)
T ss_pred HHHH
Confidence 8776
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.9e-47 Score=338.91 Aligned_cols=176 Identities=36% Similarity=0.654 Sum_probs=157.6
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~-~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKA-LSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHH-HHhhE
Confidence 5789999999764 799999999999999999999999999999999999999999999999876432 111 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++ .|++||+ +.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~-~tv~~~i-----------------------------------~~~LS~G~~qrv~laral~~------ 115 (178)
T cd03247 78 SVLNQRPYLFD-TTLRNNL-----------------------------------GRRFSGGERQRLALARILLQ------ 115 (178)
T ss_pred EEEccCCeeec-ccHHHhh-----------------------------------cccCCHHHHHHHHHHHHHhc------
Confidence 99999998886 6999987 78999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..++++|+++. ++ .|||++||+++++. .|||+++|++|++++.|
T Consensus 116 -~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~----------~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 -DAPIVLLDEPTVGLDPITERQLLSLIFEVL-KD----------KTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred -CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 699999999999999999999999999985 44 59999999999986 69999999999998754
No 284
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-47 Score=390.61 Aligned_cols=245 Identities=30% Similarity=0.428 Sum_probs=188.7
Q ss_pred hhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCC
Q 018638 9 SLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDG 88 (352)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
...+...+..++.++..+.... ........+.+|+......|+.....+ .+. ... ..+.
T Consensus 273 l~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~-----------~~~--~~~~-- 331 (529)
T TIGR02868 273 LAVLVLLPLAAFEAFAPLPAAA-----QALTRVRAAAERIEEVTGAKGPRPEGV-VPA-----------AGA--LGLG-- 331 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCcCCCC-CCC-----------Ccc--cCCC--
Confidence 3334444445566666655555 566677888888888887664211100 000 000 0111
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
...|+++||+|+|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++... ... . +.
T Consensus 332 ~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~-l-r~ 408 (529)
T TIGR02868 332 KPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDE-L-RR 408 (529)
T ss_pred CceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHH-H-Hh
Confidence 123999999999975 5699999999999999999999999999999999999999999999999998765 332 2 34
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+|+||||++.+|+. |++|||.++. ...+ ++++.++++.++++++.++.| ..||||||||++
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~---~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR---PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC---CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 79999999999985 9999998853 1122 344778899999887666554 579999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
|||||++ +|+|||||||||+||++++..+++.|.++.++ +|+|+|||++
T Consensus 481 iARall~-------~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~-----------~TvIiItHrl 529 (529)
T TIGR02868 481 LARALLA-------DAPILLLDEPTEHLDAGTESELLEDLLAALSG-----------KTVVVITHHL 529 (529)
T ss_pred HHHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC-----------CEEEEEecCC
Confidence 9999997 59999999999999999999999999986433 5999999984
No 285
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.6e-47 Score=341.29 Aligned_cols=186 Identities=37% Similarity=0.597 Sum_probs=157.9
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC--CC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--AL 178 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~--~l 178 (352)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..........+.+++|+||++ .+
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4567799999999999999999999999999999999999999999999999986421111111233699999998 35
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
|+ .||+||+.+..... +...++..+++.++++.+||.+..++++.+||||||||++|||||+. +|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM-------RPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEc
Confidence 54 79999998864322 23444555678899999999999999999999999999999999997 69999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
|||+|||+.++..+.++|++++++| .|||++|||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~----------~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEG----------MTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeecccc
Confidence 9999999999999999999997766 599999999875
No 286
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-48 Score=360.04 Aligned_cols=213 Identities=31% Similarity=0.519 Sum_probs=184.1
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccceEEEEe
Q 018638 96 NVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~~ig~v~ 173 (352)
|+.+.+|+. +| +++|+.+.-.++||-|+||||||||+|+|+||.+|++|.|.+||+-+.+....- ...+++|||||
T Consensus 5 ~~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 455666654 33 799999987899999999999999999999999999999999998654321111 11234799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
||..|||++||+.|+.|+.+.. .....+++.+.+|++++++|+|.+|||||||||||+|||+. .|+
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt-------~P~ 148 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT-------APE 148 (352)
T ss_pred eccccccceEEecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc-------CCC
Confidence 9999999999999999987432 12336778899999999999999999999999999999997 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccC
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~ 333 (352)
+||||||.|+||...+++++-.|.+|+++-+ ..|++|||.++++.++||+|++|++|++.+.|..+++...
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~---------IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEIN---------IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcC---------CCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999999999999999999999998742 6899999999999999999999999999999999887643
No 287
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9e-47 Score=387.44 Aligned_cols=221 Identities=21% Similarity=0.372 Sum_probs=187.9
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++|+++ .+|++|||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ......+.
T Consensus 265 ~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL-STAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC-CHHHHHhC
Confidence 356899999994 269999999999999999999999999999999999999999999999987543 22222234
Q ss_pred eEEEEecCC---CCCCCCCHHHHHHhhhhh-cC-CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHH
Q 018638 168 RIGLVFQSA---ALFDSLTVRENVGFLLYE-NS-KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 168 ~ig~v~Q~~---~l~~~lTV~eni~~~~~~-~~-~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
+|+|+||++ .+|+.+|+.+|+...... .. .......++.+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 699999985 478889999999643211 00 011223345678999999997 788999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|+||||||||+|||+.+++.+.++|++++++| .|||+||||++++.++|||+++|++|++
T Consensus 419 ~~-------~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g----------~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 419 EA-------SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN----------VAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred hh-------CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 96 699999999999999999999999999998776 5999999999999999999999999999
Q ss_pred EEeecccccc
Q 018638 322 VWQGMTHEFT 331 (352)
Q Consensus 322 v~~g~~~~~~ 331 (352)
+..|+++++.
T Consensus 482 ~~~~~~~~~~ 491 (510)
T PRK15439 482 SGALTGAAIN 491 (510)
T ss_pred EEEEccccCC
Confidence 9999887764
No 288
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-46 Score=426.24 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=197.2
Q ss_pred CcceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..+.|+++||+|.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .... .
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~--~~~~-~ 1001 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET--NLDA-V 1001 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc--hHHH-H
Confidence 346799999999995 5789999999999999999999999999999999999999999999999998753 1122 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++++||+||++.+++.+||+||+.+..... +...++.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk-g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~-- 1078 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG-- 1078 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 346999999999999999999999875432 34445556778999999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|+||||||||+|||+.+++.++++|++++ +| .|||++||+++++..+||||++|++|+++..|
T Consensus 1079 -----~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g----------~TIIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1079 -----DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG----------RTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred -----CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 699999999999999999999999999995 45 59999999999999999999999999999999
Q ss_pred ccccc
Q 018638 326 MTHEF 330 (352)
Q Consensus 326 ~~~~~ 330 (352)
++.++
T Consensus 1143 s~~~L 1147 (2272)
T TIGR01257 1143 TPLFL 1147 (2272)
T ss_pred CHHHH
Confidence 87665
No 289
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-46 Score=387.31 Aligned_cols=255 Identities=27% Similarity=0.398 Sum_probs=198.6
Q ss_pred chhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 018638 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (352)
..+.+...+..++.++..+++.. ........+.+++.+.+..|+...... ... .+..
T Consensus 262 ~~~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~~~~ri~~ll~~~~~~~~~~-----------------~~~-~~~~ 318 (529)
T TIGR02857 262 TGLFVLLLAPEFYLPLRQLGADY-----HARADGVAAAEALFAVLDAPRPLAGKA-----------------PVT-AAPA 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCcccCCCc-----------------CCC-CCCC
Confidence 33444444445566666665555 667778888889888876442111000 000 0111
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...
T Consensus 319 --~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~-~~l- 394 (529)
T TIGR02857 319 --PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSW- 394 (529)
T ss_pred --CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH-HHH-
Confidence 24999999999976 469999999999999999999999999999999999999999999999999876533 222
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
+.+|+||+|++.+|+ .|++||+.++.. ..++ +++.++++.++++++.++. ..+||||||||
T Consensus 395 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA-GTIAENIRLARP---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred HhheEEEcCCCcccC-cCHHHHHhccCC---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 346999999999997 599999988531 1222 3467788888887665554 36899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++|||||++ +|+++||||||++||+.+++.+++.+.++.+ + +|+|+|||+++.+. .||+|+
T Consensus 467 i~laRal~~-------~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~----------~t~i~itH~~~~~~-~~d~i~ 527 (529)
T TIGR02857 467 LALARAFLR-------DAPLLLLDEPTAHLDAETEALVTEALRALAQ-G----------RTVLLVTHRLALAE-RADRIV 527 (529)
T ss_pred HHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHH-hCCEEE
Confidence 999999997 5999999999999999999999999998853 3 59999999999986 589999
Q ss_pred EE
Q 018638 315 FL 316 (352)
Q Consensus 315 vL 316 (352)
+|
T Consensus 528 ~l 529 (529)
T TIGR02857 528 VL 529 (529)
T ss_pred eC
Confidence 86
No 290
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-46 Score=424.28 Aligned_cols=224 Identities=24% Similarity=0.454 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC------------------------
Q 018638 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP------------------------ 143 (352)
Q Consensus 91 ~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p------------------------ 143 (352)
-|+++||+|+|++ +++|+|+||+|++|+.+|||||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 3999999999963 4799999999999999999999999999999999999998
Q ss_pred ------------------------------CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 144 ------------------------------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 144 ------------------------------~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
++|+|++||.++..+.. ..+ +.+||||+|+|.||+ .|++|||.++..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~-~~l-R~~i~~V~Qep~LF~-gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL-KDL-RNLFSIVSQEPMLFN-MSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH-HHH-HhhccEeCCCCcccc-ccHHHHHhcCCC
Confidence 69999999999876533 333 347999999999997 699999999631
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
..+ .+.+.++++.++++++....| ..||||||||++|||||++ +|+|||||||||
T Consensus 1322 ---~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr-------~p~ILLLDEaTS 1387 (1466)
T PTZ00265 1322 ---DAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR-------EPKILLLDEATS 1387 (1466)
T ss_pred ---CCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCccc
Confidence 122 234778888888877665554 5799999999999999997 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC----CeEE-EeecccccccCCcH
Q 018638 263 GLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE----GKIV-WQGMTHEFTSSSNP 336 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~----G~iv-~~g~~~~~~~~~~~ 336 (352)
+||+++++.+++.|.++.. ++ .|+|+|||+++.+.. ||+|++|++ |+++ +.|+.++++.....
T Consensus 1388 aLD~~sE~~I~~~L~~~~~~~~----------~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g 1456 (1466)
T PTZ00265 1388 SLDSNSEKLIEKTIVDIKDKAD----------KTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhccCC----------CEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCC
Confidence 9999999999999999852 44 599999999999876 799999999 9955 89977777643333
Q ss_pred HHHHHh
Q 018638 337 IVQQFA 342 (352)
Q Consensus 337 ~~~~~~ 342 (352)
...+++
T Consensus 1457 ~Y~~l~ 1462 (1466)
T PTZ00265 1457 VYKKYV 1462 (1466)
T ss_pred hHHHHH
Confidence 444443
No 291
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=383.52 Aligned_cols=222 Identities=22% Similarity=0.356 Sum_probs=186.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+++|+++||++.| +.+|++|||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... ......+..
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH-NANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC-CHHHHHHCC
Confidence 4689999999985 4699999999999999999999999999999999999999999999999987543 222222346
Q ss_pred EEEEecCC---CCCCCCCHHHHHHhh-----hhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHH
Q 018638 169 IGLVFQSA---ALFDSLTVRENVGFL-----LYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~---~l~~~lTV~eni~~~-----~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIAr 239 (352)
++|+||++ .+|+.+|+.+|+.+. .............+.+.++++.+++. +..++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 99999985 478888888774332 11011112234456678899999995 5789999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|+||||||||+|||+.++..++++|+++.++| .|||++|||++++.++|||+++|++|
T Consensus 405 al~~-------~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~----------~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 405 WLLT-------QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD----------KGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred HHhc-------CCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC----------CEEEEECCChHHHHhhCCEEEEEECC
Confidence 9997 699999999999999999999999999998776 59999999999999999999999999
Q ss_pred eEEEeeccccc
Q 018638 320 KIVWQGMTHEF 330 (352)
Q Consensus 320 ~iv~~g~~~~~ 330 (352)
+++..++++++
T Consensus 468 ~i~~~~~~~~~ 478 (491)
T PRK10982 468 LVAGIVDTKTT 478 (491)
T ss_pred EEEEEEccccC
Confidence 99988876543
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-46 Score=342.15 Aligned_cols=187 Identities=26% Similarity=0.425 Sum_probs=159.0
Q ss_pred EEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 92 IDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 92 l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
|+++||+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 5799999999764 699999999999999999999999999999999999999999999988
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcccccCCCCCChHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-----------LKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~~~~LSGGqrQRv 235 (352)
+|+|+||++.+|+ .|++||+.+... ...+. ..++++.++ ++...++.+.+||+|||||+
T Consensus 67 -~i~~~~q~~~l~~-~t~~enl~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv 136 (204)
T cd03250 67 -SIAYVSQEPWIQN-GTIRENILFGKP----FDEER----YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI 136 (204)
T ss_pred -EEEEEecCchhcc-CcHHHHhccCCC----cCHHH----HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHH
Confidence 3899999999885 699999987532 11211 223333333 34445677899999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
+|||||+. +|+++||||||++||+.+++.+.+ +++++.+++ .|||++||+++.+.. ||+++
T Consensus 137 ~laral~~-------~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~----------~tvi~~sh~~~~~~~-~d~i~ 198 (204)
T cd03250 137 SLARAVYS-------DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN----------KTRILVTHQLQLLPH-ADQIV 198 (204)
T ss_pred HHHHHHhc-------CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC----------CEEEEEeCCHHHHhh-CCEEE
Confidence 99999997 699999999999999999999988 566665555 599999999999998 99999
Q ss_pred EEeCCe
Q 018638 315 FLYEGK 320 (352)
Q Consensus 315 vL~~G~ 320 (352)
+|++|+
T Consensus 199 ~l~~G~ 204 (204)
T cd03250 199 VLDNGR 204 (204)
T ss_pred EEeCCC
Confidence 999985
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-46 Score=377.38 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 89 DVLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 89 ~~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+|++++||+++|++ +.+|++|||+|++|+++||+||||||||||+++|+|+++|++|+|+++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 358999999999976 4699999999999999999999999999999999999999999999999641
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
++.+.+.+++.+|++||+.+..... +.+.++..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-- 160 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-- 160 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh--
Confidence 1222345667789999998754222 23445556677889999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+.++..+.+.|++++++| .|||++|||++++..+||++++|++|++++.|
T Consensus 161 -----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G----------~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G 225 (549)
T PRK13545 161 -----NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQG----------KTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225 (549)
T ss_pred -----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 599999999999999999999999999997666 59999999999999999999999999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 226 ~~~el~~ 232 (549)
T PRK13545 226 DIKEVVD 232 (549)
T ss_pred CHHHHHh
Confidence 8877653
No 294
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-46 Score=423.28 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=185.4
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|+. +++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.+||.|+..... ... +.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~-~~l-R~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDL-RRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH-HHH-Hhh
Confidence 4999999999953 479999999999999999999999999999999999999999999999999876533 333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.+|+. |++|||.++. ..++ +++.++++.+++.++.++.| ..||||||||++|
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~----~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFS----EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCC----CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997631 1232 34677888888876655544 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+++.+.+++.|++..+ + +|+|+|+|+++++.. ||||+||+
T Consensus 1383 ARALLr-------~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~----------~TvI~IAHRl~ti~~-~DrIlVL~ 1443 (1495)
T PLN03232 1383 ARALLR-------RSKILVLDEATASVDVRTDSLIQRTIREEFK-S----------CTMLVIAHRLNTIID-CDKILVLS 1443 (1495)
T ss_pred HHHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEeCCHHHHHh-CCEEEEEE
Confidence 999997 5999999999999999999999999998754 3 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCC
Q 018638 318 EGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~ 334 (352)
+|+|++.|+++++....
T Consensus 1444 ~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1444 SGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887543
No 295
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.8e-46 Score=363.11 Aligned_cols=200 Identities=37% Similarity=0.607 Sum_probs=174.7
Q ss_pred EEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHH
Q 018638 122 IIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDE 201 (352)
Q Consensus 122 IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~ 201 (352)
|+||||||||||+|+|+|+++|++|+|+++|+++.... . . +++|+|+||++.+|+.+||+||+.|++... +....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~-~--~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-P-H--LRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-H-H--HCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHH
Confidence 68999999999999999999999999999999875432 1 1 236999999999999999999999976322 23445
Q ss_pred HHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 018638 202 QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 202 ~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~ 281 (352)
+..+++.++++.++|.++.++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++.+
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~-------~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF-------KPKILLLDEPLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999999999999997 6999999999999999999999999999976
Q ss_pred c-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc-CCcHHHHHHhc
Q 018638 282 K-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 282 ~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~-~~~~~~~~~~~ 343 (352)
+ | .|+|+||||++++..+||||++|++|++++.|+++++.. +.+..+..|+.
T Consensus 149 ~~g----------~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 149 QLG----------ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIG 202 (325)
T ss_pred hcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhcC
Confidence 5 5 599999999999999999999999999999999988764 44566666654
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=384.97 Aligned_cols=208 Identities=29% Similarity=0.458 Sum_probs=179.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .+||
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 67 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-------------ERLG 67 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CEEE
Confidence 589999999999888999999999999999999999999999999999999999999999872 1599
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc----------CCC---------------------CHHHHHHHHHHHHHHcCCCcc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN----------SKM---------------------RDEQISELVKENLAAVGLKGV 219 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~----------~~~---------------------~~~~~~~~v~~~l~~~gL~~~ 219 (352)
|++|++.+++.+||+||+.++.... ... ...+..+++.++++.+|+.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999999999999999998753100 000 001223567889999999764
Q ss_pred c-ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 220 E-DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 220 ~-~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
. ++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|.+ .+ .|||+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~----------~tiii 207 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFS-------NPDILLLDEPTNNLDINTIRWLEDVLNE---RN----------STMII 207 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHh---CC----------CeEEE
Confidence 4 57899999999999999999996 6999999999999999999999999863 34 49999
Q ss_pred EcCCHHHHHhhcCEEEEEeCCeE-EEeecccccc
Q 018638 299 VTHQHSTIRRAVDRLIFLYEGKI-VWQGMTHEFT 331 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~G~i-v~~g~~~~~~ 331 (352)
||||++.+..+||+|++|++|++ ++.|+++++.
T Consensus 208 vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 208 ISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999999 4788777654
No 297
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.9e-46 Score=422.50 Aligned_cols=213 Identities=27% Similarity=0.432 Sum_probs=185.9
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|.+ .++|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.|||.++.... .... |.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~-l~~L-R~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFG-LMDL-RKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCC-HHHH-Hhc
Confidence 4999999999964 46999999999999999999999999999999999999999999999999987653 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|++|||+|.+|+. |++|||.++- ..+ ++++.++++.+++.++.++.| ..||||||||++|
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 9999999999985 9999997632 122 344678888888877665554 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||.++.+.+++.|++..+ + +|+|+|+|+++++.. ||||+||+
T Consensus 1386 ARALLr-------~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~----------~TvI~IAHRL~tI~~-~DrIlVLd 1446 (1622)
T PLN03130 1386 ARALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFK-S----------CTMLIIAHRLNTIID-CDRILVLD 1446 (1622)
T ss_pred HHHHHc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C----------CEEEEEeCChHHHHh-CCEEEEEE
Confidence 999997 5999999999999999999999999998754 3 599999999999987 69999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|+|++.|++++++..
T Consensus 1447 ~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1447 AGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999888754
No 298
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.8e-46 Score=383.32 Aligned_cols=274 Identities=22% Similarity=0.295 Sum_probs=209.7
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.|+..++... ........+.+|+...+..+..+........ .. ..... +
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~-----~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~---~~-----~~~~~--~ 330 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSAL-----PILAQAQIACQRLADFGERFNEPEPELELSD---AD-----NVLLL--A 330 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccccccccccc---cc-----ccccc--c
Confidence 44455566666677788888888877 7788888999999988754321100000000 00 00000 0
Q ss_pred CCCCcceEEEEeEEEEeCCe-----eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC
Q 018638 85 EDDGDVLIDCRNVYKSFGEK-----HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI 159 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~-----~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~ 159 (352)
+......|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 331 ~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 331 HDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410 (555)
T ss_pred cCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 00112349999999999752 5999999999999999999999999999999999999999999999999987643
Q ss_pred ChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC------CCCChHHHH
Q 018638 160 SDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKK 233 (352)
Q Consensus 160 ~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSGGqrQ 233 (352)
.... +.+++||+|++.+|+. |+++|+. +...++++.++++.++++++.++.| ..|||||||
T Consensus 411 -~~~~-~~~i~~v~q~~~lf~~-ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 -RDDY-RDLFSAIFADFHLFDD-LIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred -HHHH-HhhCcEEccChhhhhh-hhhcccc----------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 2222 3369999999999974 8999841 1122345778999999988776655 469999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~-~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|++|||||++ +|++|||||||++||+.+++.+.+.+. .+..++ .|+|+|||+++.+. .||+
T Consensus 478 RlalaRall~-------~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tiiiisH~~~~~~-~~d~ 539 (555)
T TIGR01194 478 RLALICAWLE-------DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG----------KTIIIISHDDQYFE-LADQ 539 (555)
T ss_pred HHHHHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeccHHHHH-hCCE
Confidence 9999999997 599999999999999999999988654 455555 59999999999765 6899
Q ss_pred EEEEeCCeEEEe
Q 018638 313 LIFLYEGKIVWQ 324 (352)
Q Consensus 313 v~vL~~G~iv~~ 324 (352)
|++|++|++++.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999865
No 299
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.8e-46 Score=381.64 Aligned_cols=221 Identities=26% Similarity=0.393 Sum_probs=181.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++........ .+
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~-~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD-IK 335 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH-HH
Confidence 34689999999999988899999999999999999999999999999999998876 79999999986532111111 23
Q ss_pred ceEEEEecCCCCCC--CCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFD--SLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~--~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArA 240 (352)
.+|||++|++.++. ..++.+++.++.... ......+..+++.++++.++|.+ ..++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 36999999976543 246777665432110 00111233456889999999987 8899999999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh-hcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR-AVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~-~aDrv~vL~~G 319 (352)
|+. +|++|||||||+|||+.++..+.++|++++++++ .|||+||||++++.+ +||++++|++|
T Consensus 416 l~~-------~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~---------~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 416 LVK-------HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE---------TQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred Hhc-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC---------cEEEEEecchhhhhhhhheeEEEecCC
Confidence 997 6999999999999999999999999999987652 479999999999987 59999999999
Q ss_pred eEEEee
Q 018638 320 KIVWQG 325 (352)
Q Consensus 320 ~iv~~g 325 (352)
+|++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998764
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.3e-46 Score=386.98 Aligned_cols=207 Identities=29% Similarity=0.431 Sum_probs=179.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+||+++||+++|+ ++.+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-------------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-------------IK 71 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5899999999998 788999999999999999999999999999999999999999999998641 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-------------CCCCH----------------------HHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-------------SKMRD----------------------EQISELVKENLAA 213 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-------------~~~~~----------------------~~~~~~v~~~l~~ 213 (352)
||||||++.+++.+||.||+.++.... ..... .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 999999999999999999998753210 00000 0123567889999
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++. +
T Consensus 152 ~gl~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~---------- 211 (556)
T PRK11819 152 LRCPP-WDAKVTKLSGGERRRVALCRLLLE-------KPDMLLLDEPTNHLDAESVAWLEQFLHDYP--G---------- 211 (556)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhC-------CCCEEEEcCCCCcCChHHHHHHHHHHHhCC--C----------
Confidence 99964 789999999999999999999997 699999999999999999999999998762 2
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
|||+||||++++..+||+|++|++|+++ +.|+.+++
T Consensus 212 -tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 212 -TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred -eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 8999999999999999999999999986 77766654
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=386.31 Aligned_cols=223 Identities=30% Similarity=0.490 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--
Q 018638 90 VLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE-- 163 (352)
Q Consensus 90 ~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~-- 163 (352)
++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999963 479999999999999999999999999999999999999999999999998765422221
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
..+++++|+||++.+|+.+|+.||+.+..... +....+..+++.++++.+||.+..++.+.+|||||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 12346999999999999999999998865322 23444556678899999999999999999999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.+++.+.++|+++++++ .|+|++||+++.+. .|||+++|++|++++
T Consensus 162 -------~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g----------~tilivsH~~~~~~-~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 162 -------GGQVILADEPTGALDSHSGEEVMAILHQLRDRG----------HTVIIVTHDPQVAA-QAERVIEIRDGEIVR 223 (648)
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHH-hCCEEEEEECCEEEe
Confidence 599999999999999999999999999998766 59999999999886 699999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
+|++++..
T Consensus 224 ~g~~~~~~ 231 (648)
T PRK10535 224 NPPAQEKV 231 (648)
T ss_pred ecCccccc
Confidence 99888764
No 302
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-46 Score=401.12 Aligned_cols=255 Identities=32% Similarity=0.464 Sum_probs=205.2
Q ss_pred hhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCCe---eeeEeeeEE
Q 018638 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGEK---HILRGVSFK 113 (352)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~~---~~L~~vsl~ 113 (352)
-..+.+.+-..+..+...++.-.+.+... ...+.-.++ |+++||+|+|+.+ ++|+|+||+
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---------------~~~~~~~G~--I~~~~V~F~YPsRP~~~Il~~l~l~ 1012 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDSTSG---------------GKLPNVKGD--IEFRNVSFAYPTRPDVPVLNNLSLS 1012 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCC---------------CccccceeE--EEEeeeEeeCCCCCCchhhcCCcEE
Confidence 44566667777777777776332222000 000122234 9999999999764 599999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++|+.+||||||||||||.+.+|-++++|++|.|.+||+|+..+. ..++ |++||.|.|+|.||. -|++|||.|+.
T Consensus 1013 i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~L-R~~i~lVsQEP~LF~-~TIrENI~YG~- 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWL-RKQIGLVSQEPVLFN-GTIRENIAYGS- 1088 (1228)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHH-HHhcceeccCchhhc-ccHHHHHhccC-
Confidence 9999999999999999999999999999999999999999998763 3444 447999999999997 59999999972
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
. ..+. +++.++++..+.+++....| .+||||||||+|||||+++ +|+||||||.||
T Consensus 1089 -~-~vs~----~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR-------nPkILLLDEATS 1155 (1228)
T KOG0055|consen 1089 -E-EVSE----EEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR-------NPKILLLDEATS 1155 (1228)
T ss_pred -C-CCCH----HHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc-------CCCeeeeeccch
Confidence 1 1333 34667788877766655554 6999999999999999998 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccccCCcHH
Q 018638 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~~~~~~ 337 (352)
+||.++++.+++.|.+... | .|.|+|+|+++++.+ ||.|+|+++|+|+|+|+-++++.....+
T Consensus 1156 ALDseSErvVQeALd~a~~-g----------RT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G~Y 1218 (1228)
T KOG0055|consen 1156 ALDSESERVVQEALDRAME-G----------RTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRGIY 1218 (1228)
T ss_pred hhhhhhHHHHHHHHHHhhc-C----------CcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCCch
Confidence 9999999999999999764 4 499999999999987 6999999999999999666676644333
No 303
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8e-46 Score=419.95 Aligned_cols=276 Identities=24% Similarity=0.304 Sum_probs=211.1
Q ss_pred HHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEE
Q 018638 16 TKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCR 95 (352)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (352)
+..++.++..+.... ........+.+|+...+..|+........ . . ....-+..+ .|+++
T Consensus 1229 ~~~~~~~l~~l~~~~-----~~~e~~~~s~eRi~~~~~~~~e~~~~~~~------~------~-~~~~wp~~g--~I~f~ 1288 (1522)
T TIGR00957 1229 SLQVTFYLNWLVRMS-----SEMETNIVAVERLKEYSETEKEAPWQIQE------T------A-PPSGWPPRG--RVEFR 1288 (1522)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCCccccccC------C------C-CCCCCCCCC--cEEEE
Confidence 333444544444444 45566677788888888776422100000 0 0 000001122 39999
Q ss_pred eEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 96 NVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 96 nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
||+++|++ ..+|+||||+|++||.+||||+||||||||+++|.|+++|++|+|.+||.|+..... ... |.+|+|||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~-~~L-R~~i~iVp 1366 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HDL-RFKITIIP 1366 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH-HHH-HhcCeEEC
Confidence 99999964 469999999999999999999999999999999999999999999999999977533 333 34799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHh
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSII 242 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~ 242 (352)
|+|.+|+. |+++||... ...++ +++.++++.+++.++.++.| ..||||||||++|||||+
T Consensus 1367 Qdp~LF~g-TIr~NLdp~----~~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1367 QDPVLFSG-SLRMNLDPF----SQYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred CCCcccCc-cHHHHcCcc----cCCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence 99999985 999999631 12333 34677888888866554443 579999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+ +|+|||||||||+||+++...+++.|++..++ +|+|+|+|+++.+.. ||||+||++|+|+
T Consensus 1438 r-------~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~-----------~TvI~IAHRl~ti~~-~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1438 R-------KTKILVLDEATAAVDLETDNLIQSTIRTQFED-----------CTVLTIAHRLNTIMD-YTRVIVLDKGEVA 1498 (1522)
T ss_pred c-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 7 59999999999999999999999999886543 599999999999987 5999999999999
Q ss_pred EeecccccccCCcHHHHHHh
Q 018638 323 WQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 323 ~~g~~~~~~~~~~~~~~~~~ 342 (352)
+.|++++++... ....+++
T Consensus 1499 E~G~~~eLl~~~-~~f~~l~ 1517 (1522)
T TIGR00957 1499 EFGAPSNLLQQR-GIFYSMA 1517 (1522)
T ss_pred EECCHHHHHhCC-CHHHHHH
Confidence 999998887543 3444444
No 304
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.9e-45 Score=324.48 Aligned_cols=162 Identities=32% Similarity=0.596 Sum_probs=147.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..+..+.+++|
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS-PRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC-HHHHHhcCeEE
Confidence 57899999999889999999999999999999999999999999999999999999999999875432 21222346999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+|| ||||||||++|||||+. +
T Consensus 80 ~~q----------------------------------------------------LS~G~~qrl~laral~~-------~ 100 (163)
T cd03216 80 VYQ----------------------------------------------------LSVGERQMVEIARALAR-------N 100 (163)
T ss_pred EEe----------------------------------------------------cCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
|++|||||||++||+.+++.+.++|+++++++ .|+|++|||++++..+|||+++|++|++++
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQG----------VAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999997665 599999999999999999999999999875
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=8e-46 Score=342.05 Aligned_cols=196 Identities=30% Similarity=0.485 Sum_probs=168.6
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC--CCCHHHHHH
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD--SLTVRENVG 189 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~--~lTV~eni~ 189 (352)
|+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. . .+.+++|+||++.+++ .+|+.+|+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~--~~~~i~~v~q~~~~~~~~~~tv~~~l~ 73 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----K--GWRHIGYVPQRHEFAWDFPISVAHTVM 73 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----H--hhCcEEEecccccccCCCCccHHHHHH
Confidence 578999999999999999999999999999999999999998642 1 1236999999987632 379999998
Q ss_pred hhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 190 FLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 190 ~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
++...... .......+++.++++.+++++..++++.+||||||||++|||||+. +|++|||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~-------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 74 SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT-------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred hccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeCCcccCCH
Confidence 75321100 1122334568889999999999999999999999999999999997 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
.++..+.++|++++++| .|+|++|||++++.++||+++++ +|++++.|+++++..
T Consensus 147 ~~~~~l~~~l~~~~~~~----------~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 147 PTQELLTELFIELAGAG----------TAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999998766 59999999999999999999999 899999998888754
No 306
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.5e-46 Score=391.06 Aligned_cols=215 Identities=30% Similarity=0.500 Sum_probs=187.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--ceEEEECCEeCCCCCChhhhccceEE
Q 018638 93 DCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD--KGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 93 ~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~--~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+|++++|+++.+|+|||+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. . . ++++|
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~-~-~~~i~ 143 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----Q-I-LKRTG 143 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----h-h-ccceE
Confidence 3667889998889999999999999999999999999999999999999985 8999999998631 1 1 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCccc-----ccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVE-----DRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~-----~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
||+|++.+++.+||+||+.+..... ...+.++..++++++++.+||.+.. ++.+.+|||||||||+|||+|+.
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 9999999999999999999865322 1234455567789999999997765 44678899999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~iv 322 (352)
+|+||||||||+|||+.++..+.+.|++++++| .|||++||+++ .+.+++|++++|++|+++
T Consensus 224 -------~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 224 -------NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG----------KTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred -------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCC----------CEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 599999999999999999999999999998776 59999999998 588999999999999999
Q ss_pred Eeeccccc
Q 018638 323 WQGMTHEF 330 (352)
Q Consensus 323 ~~g~~~~~ 330 (352)
..|+++++
T Consensus 287 ~~G~~~~~ 294 (659)
T PLN03211 287 FFGKGSDA 294 (659)
T ss_pred EECCHHHH
Confidence 99988765
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-46 Score=329.30 Aligned_cols=169 Identities=41% Similarity=0.686 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
|+++|++++|+++ .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.... ... .+.++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD-LES-LRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC-HHH-HHhhE
Confidence 4789999999875 7999999999999999999999999999999999999999999999999865432 222 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+|+ .|++||+ ||||||||++|||||+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l--------------------------------------LS~G~~~rl~la~al~~------ 113 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI--------------------------------------LSGGQRQRIAIARALLR------ 113 (171)
T ss_pred EEEcCCchhcc-chHHHHh--------------------------------------hCHHHHHHHHHHHHHhc------
Confidence 99999998887 6999987 99999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|++|||||||++||+.++..+.++|+++.+ + .|+|++|||++++.. ||++++|++|+
T Consensus 114 -~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~----------~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 114 -DPPILILDEATSALDPETEALILEALRALAK-G----------KTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-C----------CEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 6999999999999999999999999999854 4 599999999999987 99999999985
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-46 Score=381.86 Aligned_cols=204 Identities=24% Similarity=0.388 Sum_probs=179.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 383 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-------------AN 383 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------eE
Confidence 46899999999999888999999999999999999999999999999999999999999999873 15
Q ss_pred EEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+||++|++. +++.+|+++|+.+.. . .. ...+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-- 455 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-- 455 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc--c--CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc--
Confidence 999999974 556789999986521 1 11 1134578899999994 68899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Ee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~ 324 (352)
+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++..+|||+++|++|+++ +.
T Consensus 456 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~ 517 (530)
T PRK15064 456 -----KPNVLVMDEPTNHMDMESIESLNMALEKY--E-----------GTLIFVSHDREFVSSLATRIIEITPDGVVDFS 517 (530)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C-----------CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcC
Confidence 69999999999999999999999999876 2 38999999999999999999999999998 77
Q ss_pred ecccccc
Q 018638 325 GMTHEFT 331 (352)
Q Consensus 325 g~~~~~~ 331 (352)
|++.++.
T Consensus 518 g~~~~~~ 524 (530)
T PRK15064 518 GTYEEYL 524 (530)
T ss_pred CCHHHHH
Confidence 8776654
No 309
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=335.44 Aligned_cols=236 Identities=31% Similarity=0.519 Sum_probs=209.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC-EeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G-~~~~~~~~~~~~~~~~ 168 (352)
+.|+++||+++||+..+|+++||+|.+||.-+|||||||||||++.+|+|-.+|+.|+|+|+| .++..+ ...++.+..
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~-~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL-PEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC-CHHHHHHhc
Confidence 579999999999999999999999999999999999999999999999999999999999999 787765 445566668
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCC-------CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKM-------RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~-------~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
||--||.|..|+.+||+||+.+.....+.. ...+.+++++++|+..||.+..++....||.||||++.|++-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 999999999999999999998876432211 1233356799999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
++ +|++||||||++|+-.......-++|+.++.. .+|++|.|||.++..+|++|-||+.|.+
T Consensus 163 ~Q-------~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-----------hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 163 AQ-------DPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-----------HSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred cc-------CCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-----------ceEEEEeccHHHHHHhhheeEEEeccce
Confidence 97 59999999999999999999999999999875 4999999999999999999999999999
Q ss_pred EEeecccccccCCcHHHHHHhcCCC
Q 018638 322 VWQGMTHEFTSSSNPIVQQFASGSL 346 (352)
Q Consensus 322 v~~g~~~~~~~~~~~~~~~~~~~~~ 346 (352)
..+|+..++. .+|.+.+.|.|..
T Consensus 225 L~EGsld~v~--~dp~ViEvYLGr~ 247 (249)
T COG4674 225 LAEGSLDEVQ--NDPKVIEVYLGRK 247 (249)
T ss_pred eecccHHHhh--cCcceEeeecccC
Confidence 9999988875 3466666665543
No 310
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-45 Score=337.31 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=163.9
Q ss_pred EEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccceE
Q 018638 93 DCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLRI 169 (352)
Q Consensus 93 ~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~i 169 (352)
.+.|+.++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ....+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 46799999999999999999999999999999999999999999999999876432110 11123469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRvaIA 238 (352)
+|++|++.+|+ .|++||+.+... ...+ ...++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~q~~~~~~-~t~~~nl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 82 AYAAQKPWLLN-ATVEENITFGSP----FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEcCCCcccc-ccHHHHHhhcCc----CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999998885 799999987531 1221 22345555555432 3567899999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED--LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~--ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||+. +|++|||||||++||+.++..+++ +++.+++++ .|+|++||+++.+. .||++++|
T Consensus 153 ral~~-------~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~----------~tii~~sH~~~~~~-~~d~i~~l 214 (218)
T cd03290 153 RALYQ-------NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK----------RTLVLVTHKLQYLP-HADWIIAM 214 (218)
T ss_pred HHHhh-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCC----------CEEEEEeCChHHHh-hCCEEEEe
Confidence 99997 699999999999999999999998 666665555 59999999999986 69999999
Q ss_pred eCCe
Q 018638 317 YEGK 320 (352)
Q Consensus 317 ~~G~ 320 (352)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9884
No 311
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.4e-45 Score=375.98 Aligned_cols=252 Identities=22% Similarity=0.271 Sum_probs=194.9
Q ss_pred hhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEE
Q 018638 19 VSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVY 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls 98 (352)
+..|+..++... ........+.+|+.+....|....... . .+. +....|+++||+
T Consensus 275 ~~~pl~~l~~~~-----~~~~~~~~a~~ri~~l~~~~~~~~~~~----~---------------~~~-~~~~~i~~~~v~ 329 (547)
T PRK10522 275 LRTPLLSAVGAL-----PTLLSAQVAFNKLNKLALAPYKAEFPR----P---------------QAF-PDWQTLELRNVT 329 (547)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccccccc----c---------------ccc-CcCceEEEEEEE
Confidence 345666655555 456677778888887755443111000 0 000 011249999999
Q ss_pred EEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC
Q 018638 99 KSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA 177 (352)
Q Consensus 99 ~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~ 177 (352)
|+|++ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|+||+|++.
T Consensus 330 f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~-~~~i~~v~q~~~ 407 (547)
T PRK10522 330 FAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ-PEDY-RKLFSAVFTDFH 407 (547)
T ss_pred EEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC-HHHH-hhheEEEecChh
Confidence 99965 56999999999999999999999999999999999999999999999999986543 2222 347999999999
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----CCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+|+ .|+++| + .. ..++.+.++++.+++....+.. ..+||||||||++|||||++ +|
T Consensus 408 lf~-~ti~~n---~----~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-------~~ 468 (547)
T PRK10522 408 LFD-QLLGPE---G----KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-------ER 468 (547)
T ss_pred HHH-Hhhccc---c----Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 997 588888 1 01 1234567888999987654322 35899999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
++|||||||++||+.++..+.+.+.++.+ ++ .|+|+|||+++.+. .||+|++|++|++++....
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~----------~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMG----------KTIFAISHDDHYFI-HADRLLEMRNGQLSELTGE 533 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEEechHHHH-hCCEEEEEECCEEEEecCC
Confidence 99999999999999999999999887644 34 59999999998765 6899999999999987533
No 312
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.2e-45 Score=413.28 Aligned_cols=223 Identities=27% Similarity=0.417 Sum_probs=188.6
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|++ ..+|+||||+|++||.+||||+||||||||+++|.|+++|++|+|++||.|+..+. .... +.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~-l~~L-R~~ 1385 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG-LREL-RRQ 1385 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC-HHHH-Hhc
Confidence 4999999999964 45999999999999999999999999999999999999999999999999987653 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
||||||+|.||+. ||++||... ...++ +++.++++.++++++....| ..||||||||++|
T Consensus 1386 I~iVpQdp~LF~g-TIreNIdp~----~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1386 FSMIPQDPVLFDG-TVRQNVDPF----LEASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred ceEECCCCccccc-cHHHHhCcc----cCCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 9999999999985 999999642 11232 45788899999877655443 5799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+++ +|+|||||||||+||+++.+.+++.|++..++ +|+|+|+|+++.+.. ||+|+||+
T Consensus 1457 ARALL~~------~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~-----------~TvI~IAHRl~ti~~-~DrIlVLd 1518 (1560)
T PTZ00243 1457 ARALLKK------GSGFILMDEATANIDPALDRQIQATVMSAFSA-----------YTVITIAHRLHTVAQ-YDKIIVMD 1518 (1560)
T ss_pred HHHHhcC------CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCC-----------CEEEEEeccHHHHHh-CCEEEEEE
Confidence 9999962 38999999999999999999999999986443 599999999999986 69999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHh
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
+|+|++.|+++++....+....+++
T Consensus 1519 ~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243 1519 HGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred CCEEEEECCHHHHHhCCCCHHHHHH
Confidence 9999999999998754343444444
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-45 Score=379.84 Aligned_cols=208 Identities=29% Similarity=0.421 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.||+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-------------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-------------IK 69 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-------------CE
Confidence 5799999999998 778999999999999999999999999999999999999999999998741 25
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcC-------------CCCHHH----------------------HHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENS-------------KMRDEQ----------------------ISELVKENLAA 213 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~-------------~~~~~~----------------------~~~~v~~~l~~ 213 (352)
||||||++.+++.+||+||+.+++.... .....+ ..+++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 9999999999999999999987542100 000010 12456678888
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
+|+.. .++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|+++ .
T Consensus 150 ~~l~~-~~~~~~~LSgGqkqrv~la~al~~-------~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~----------- 208 (552)
T TIGR03719 150 LRCPP-WDADVTKLSGGERRRVALCRLLLS-------KPDMLLLDEPTNHLDAESVAWLEQHLQEY--P----------- 208 (552)
T ss_pred CCCCc-ccCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCCCChHHHHHHHHHHHhC--C-----------
Confidence 88854 688999999999999999999996 69999999999999999999999998875 2
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeecccccc
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEFT 331 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~~ 331 (352)
.|||+||||++.+..+||+|++|++|+++ ..|+.+++.
T Consensus 209 ~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 209 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 28999999999999999999999999975 678776643
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-45 Score=330.96 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=166.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++... . ...++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~----~--~~~~~ 73 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI----A--KPYCT 73 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh----h--hhhEE
Confidence 588999999998766665 9999999999999999999999999999999999999999999876431 1 22589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.+++.+||+||+.+....+. ..+++.++++.+++.+..++.+.+||||||||++||||++.
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~------- 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYN------SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIAC------- 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcc------cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhc-------
Confidence 99999887778999999988543211 13356788999999988899999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
+|+++||||||++||+.++..+.++|++..+++ .|+|++||+++.+.. +|-|
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~----------~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSG----------GIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCccccch-hhee
Confidence 599999999999999999999999998776555 599999999999887 4654
No 315
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.3e-44 Score=344.30 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=171.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
....|+++|+++. ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------- 98 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------------
Confidence 3456999999985 46799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----------ccccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSGGqrQRva 236 (352)
+|+|++|++.+++. ||+||+.+... .... .+.++++.+++.+ ..++.+.+||||||||++
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~----~~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVS----YDEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccc----cCHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 28999999998874 99999987531 1111 1233444445433 233456799999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||+. +|++|||||||++||+.++..+.+.+ +++. ++ .|||++||+++.+. .||++++
T Consensus 170 lAraL~~-------~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~----------~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 170 LARAVYK-------DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred HHHHHhc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCChHHHH-hCCEEEE
Confidence 9999997 69999999999999999999998754 5554 34 49999999999985 7999999
Q ss_pred EeCCeEEEeecccccccCCcHHHHHHh
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
|++|+++..|++.++.....+....++
T Consensus 231 l~~G~i~~~g~~~~~~~~~~~~~~~~~ 257 (282)
T cd03291 231 LHEGSSYFYGTFSELQSLRPDFSSKLM 257 (282)
T ss_pred EECCEEEEECCHHHHHhcchHHHHHHh
Confidence 999999999988887654344444443
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-46 Score=327.12 Aligned_cols=209 Identities=32% Similarity=0.506 Sum_probs=183.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.++++++.+.-++.++|+++||++.+||+++|+||||||||||+|+++-|..|++|+++|.|++++.+..+. .+.+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea--~Rq~Vs 80 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA--YRQQVS 80 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHH--HHHHHH
Confidence 467777777778889999999999999999999999999999999999999999999999999988764333 345799
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|+.|.|.||+. ||++|+.|+...+..... ..+..++++++++. ..+++.+.+||||||||++|+|-|..
T Consensus 81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~d---r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~------ 150 (223)
T COG4619 81 YCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF------ 150 (223)
T ss_pred HHHcCcccccc-chhhccccchHHhccCCC---hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc------
Confidence 99999999985 999999998754332222 23467889999996 47899999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
-|+|||||||||+||+.+++.+.++|.++.++.. ..+++||||.+++.+++|+++-+..|++
T Consensus 151 -~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~---------vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 151 -MPKILLLDEITSALDESNKRNIEEMIHRYVREQN---------VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred -CCceEEecCchhhcChhhHHHHHHHHHHHhhhhc---------eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 5999999999999999999999999999874321 6999999999999999999999999986
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-44 Score=374.00 Aligned_cols=208 Identities=30% Similarity=0.473 Sum_probs=178.8
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------VK 388 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------eE
Confidence 4689999999999988999999999999999999999999999999999999999999999853 1 15
Q ss_pred EEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 169 IGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 169 ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
|||+||++ .+++.+||+||+.++..... .... ...+.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~--- 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ--- 462 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc---
Confidence 99999997 77888999999988642111 1111 123457899999964 6799999999999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-CeEE-Ee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE-GKIV-WQ 324 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~-G~iv-~~ 324 (352)
+|++|||||||+|||+.++..+.++|.++ .+ |||+||||++++..+||||++|++ |++. ..
T Consensus 463 ----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-----------tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 463 ----GGNVLLLDEPTNDLDVETLRALEEALLEF--PG-----------CAVVISHDRWFLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred ----CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-----------eEEEEECCHHHHHHhCCEEEEEECCCeEEEec
Confidence 69999999999999999999999999886 23 799999999999999999999986 7876 46
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+..++.+
T Consensus 526 g~~~~~~~ 533 (556)
T PRK11819 526 GNFQEYEE 533 (556)
T ss_pred CCHHHHHH
Confidence 76666543
No 318
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.5e-44 Score=407.10 Aligned_cols=243 Identities=26% Similarity=0.397 Sum_probs=190.1
Q ss_pred hhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeEE
Q 018638 37 FYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSFK 113 (352)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl~ 113 (352)
...+...+.+++......++....... . .. .+... .|+++||+|+|++ +++|+|+||+
T Consensus 347 ~~~~a~~a~~ri~~ii~~~~~~~~~~~------~--------~~---~~~~~--~I~~~nVsf~Y~~~~~~~vL~~isl~ 407 (1466)
T PTZ00265 347 EYMKSLEATNSLYEIINRKPLVENNDD------G--------KK---LKDIK--KIQFKNVRFHYDTRKDVEIYKDLNFT 407 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCC------C--------cc---CCCCC--cEEEEEEEEEcCCCCCCceeccceEE
Confidence 455677788888888776643211000 0 00 11111 4999999999975 3699999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE-CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i-~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
|++||++||+||||||||||+++|+|+++|++|+|++ +|.++... ...+. +.+||||+|++.+|+ .||+|||.++.
T Consensus 408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-~~~~l-r~~Ig~V~Q~~~LF~-~TI~eNI~~g~ 484 (1466)
T PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-NLKWW-RSKIGVVSQDPLLFS-NSIKNNIKYSL 484 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-CHHHH-HHhccEecccccchh-ccHHHHHHhcC
Confidence 9999999999999999999999999999999999999 56776543 22332 346999999999998 59999999864
Q ss_pred hhcCC---------C-----------------------------------------CHHHHHHHHHHHHHHcCCCccc--
Q 018638 193 YENSK---------M-----------------------------------------RDEQISELVKENLAAVGLKGVE-- 220 (352)
Q Consensus 193 ~~~~~---------~-----------------------------------------~~~~~~~~v~~~l~~~gL~~~~-- 220 (352)
..... . ......+.+.++++.++++++.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~ 564 (1466)
T PTZ00265 485 YSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSA 564 (1466)
T ss_pred CCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHh
Confidence 21000 0 0011235578888888887664
Q ss_pred ---------ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCC
Q 018638 221 ---------DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANP 290 (352)
Q Consensus 221 ---------~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~ 290 (352)
.+.+.+|||||||||+|||||++ +|+||||||||++||+.++..+++.|+++++ +|
T Consensus 565 lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~-------~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g------- 630 (1466)
T PTZ00265 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIR-------NPKILILDEATSSLDNKSEYLVQKTINNLKGNEN------- 630 (1466)
T ss_pred CccccCceeCCCCCcCCHHHHHHHHHHHHHhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCC-------
Confidence 34567999999999999999997 5999999999999999999999999999975 35
Q ss_pred CCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 291 GNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 291 ~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.|+|+|||+++++. .||+|++|++|
T Consensus 631 ---~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 631 ---RITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred ---CEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 59999999999985 79999999986
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.7e-44 Score=319.25 Aligned_cols=162 Identities=29% Similarity=0.437 Sum_probs=146.7
Q ss_pred EEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-------------ceEE
Confidence 47899999996 467999999999999999999999999999999999999999999999863 2699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|++|++.++ ..|++||+.+. .+.+||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~~~~LS~G~~~rv~laral~~------- 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------WDDVLSGGEQQRLAFARLLLH------- 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------CCCCCCHHHHHHHHHHHHHHc-------
Confidence 999999876 47999999652 468999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|+++||||||++||+.++..+.++|+++ + .|+|++|||++.+ .+||++++|+++
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~----------~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---G----------ITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---C----------CEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 69999999999999999999999999876 3 4999999999875 589999999876
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-44 Score=373.41 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=177.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~------------~ 385 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T------------V 385 (552)
T ss_pred CCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c------------e
Confidence 34689999999999988899999999999999999999999999999999999999999999843 1 1
Q ss_pred eEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+|||+||++ .+++.+||.||+.++..... .... ...+.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-- 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-- 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh--
Confidence 599999997 47888999999988642111 1111 123557899999964 6799999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC-CeEE-E
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE-GKIV-W 323 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~-G~iv-~ 323 (352)
+|++|||||||++||+.++..+.++|+++. + |||+||||++++..+||||++|++ |+++ +
T Consensus 461 -----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-----------~viivsHd~~~~~~~~d~i~~l~~~~~~~~~ 522 (552)
T TIGR03719 461 -----GGNVLLLDEPTNDLDVETLRALEEALLEFA--G-----------CAVVISHDRWFLDRIATHILAFEGDSHVEWF 522 (552)
T ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-----------eEEEEeCCHHHHHHhCCEEEEEECCCeEEEe
Confidence 699999999999999999999999999872 3 799999999999999999999986 5876 5
Q ss_pred eeccccc
Q 018638 324 QGMTHEF 330 (352)
Q Consensus 324 ~g~~~~~ 330 (352)
.|+..++
T Consensus 523 ~g~~~~~ 529 (552)
T TIGR03719 523 EGNYSEY 529 (552)
T ss_pred CCCHHHH
Confidence 5655444
No 321
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.9e-45 Score=321.51 Aligned_cols=238 Identities=31% Similarity=0.524 Sum_probs=210.5
Q ss_pred ceEEEEeEEEEeCC---------eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC
Q 018638 90 VLIDCRNVYKSFGE---------KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 90 ~~l~~~nls~~y~~---------~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~ 160 (352)
+.++++|++|+|.. ..+++.|||++++|+.+||||.||||||||.|+|+|.++|++|+|.|||+.+.. .
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~--~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF--G 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc--c
Confidence 46899999999842 358999999999999999999999999999999999999999999999998643 2
Q ss_pred hhhhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGqrQRvaI 237 (352)
+...+.++|-++||+| .+.|.+.+.+-+..++.....+..++..+++.+.|+.+|| .+..+-+|..||-||||||||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaL 160 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHH
Confidence 2333445799999998 4677888888888888777677778888899999999999 468899999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||||+- +|+|+|.||..++||...+.++.+++.+|.++ | .+.|+|+.++..+..++|.|+||
T Consensus 161 ARALIL-------~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~G----------iSyiYV~QhlG~iKHi~D~viVM 223 (267)
T COG4167 161 ARALIL-------RPKIIIADEALASLDMSMRSQLINLMLELQEKQG----------ISYIYVTQHIGMIKHISDQVLVM 223 (267)
T ss_pred HHHHhc-------CCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhC----------ceEEEEechhhHhhhhcccEEEE
Confidence 999995 69999999999999999999999999999876 4 69999999999999999999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
++|++++.|++++++ .+.++.++.+++...
T Consensus 224 ~EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 224 HEGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred ecCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 999999999999976 567888888876543
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.4e-44 Score=373.02 Aligned_cols=200 Identities=30% Similarity=0.392 Sum_probs=177.9
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++|++++|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~------------ 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L------------ 400 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e------------
Confidence 45689999999999875 4999999999999999999999999999999999999999999985 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|+|+||++.+++.+||+||+.++... ... ...+.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~---- 470 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDD---LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR---- 470 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhh---cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc----
Confidence 489999999888889999999875321 111 1246789999999989999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..+.++|++++++ | .|||+||||++++..+|||+++|++ ++...|.
T Consensus 471 ---~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 ---DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE----------ATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 69999999999999999999999999999765 4 5999999999999999999999964 8887775
Q ss_pred c
Q 018638 327 T 327 (352)
Q Consensus 327 ~ 327 (352)
.
T Consensus 537 ~ 537 (590)
T PRK13409 537 A 537 (590)
T ss_pred c
Confidence 3
No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=376.74 Aligned_cols=203 Identities=27% Similarity=0.497 Sum_probs=177.7
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~ 375 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------------I 375 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-------------E
Confidence 456899999999999989999999999999999999999999999999999999999999999631 1
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 168 ~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+|||++|+. .+.+..|+.+++... . .....+.+.++|+.+++. +..++++++|||||||||+|||+|+.
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~~---~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~- 447 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLARL---A----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ- 447 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHHh---C----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-
Confidence 599999975 455667888876421 1 112245678899999996 47899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-E
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-W 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~ 323 (352)
+|++|||||||++||+.++..+.++|.++ .| |||+||||++++..+||||++|++|+++ .
T Consensus 448 ------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-----------tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~ 508 (638)
T PRK10636 448 ------RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-----------ALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508 (638)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------eEEEEeCCHHHHHHhCCEEEEEECCEEEEc
Confidence 69999999999999999999999999987 33 8999999999999999999999999997 7
Q ss_pred eeccccc
Q 018638 324 QGMTHEF 330 (352)
Q Consensus 324 ~g~~~~~ 330 (352)
.|+.+++
T Consensus 509 ~g~~~~~ 515 (638)
T PRK10636 509 DGDLEDY 515 (638)
T ss_pred CCCHHHH
Confidence 7877766
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-44 Score=336.20 Aligned_cols=180 Identities=28% Similarity=0.400 Sum_probs=155.7
Q ss_pred eeeEeeeEEEe-----CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 105 HILRGVSFKIR-----HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 105 ~~L~~vsl~i~-----~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
..+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|+ +|+|++|++.++
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------------~i~~~~q~~~~~ 73 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------------TVSYKPQYIKAD 73 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------eEEEecccccCC
Confidence 35666666665 79999999999999999999999999999999999873 489999998876
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
+.+||+||+.+...... .. ...+.++++.+++.+..++.+.+|||||||||+|||||+. +|+++||||
T Consensus 74 ~~~tv~e~l~~~~~~~~--~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-------~p~llllDE 141 (246)
T cd03237 74 YEGTVRDLLSSITKDFY--TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK-------DADIYLLDE 141 (246)
T ss_pred CCCCHHHHHHHHhhhcc--cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-------CCCEEEEeC
Confidence 67899999976432111 11 1235678999999988999999999999999999999997 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
||++||+.++..+.++|++++++ + .|||+||||++++..+||+|++|+++.
T Consensus 142 Pt~~LD~~~~~~l~~~l~~~~~~~~----------~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 142 PSAYLDVEQRLMASKVIRRFAENNE----------KTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999764 4 599999999999999999999997653
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-44 Score=339.66 Aligned_cols=204 Identities=28% Similarity=0.437 Sum_probs=172.6
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChh
Q 018638 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (352)
Q Consensus 95 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~ 162 (352)
.||+|+|+.+ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|+++.... ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HH
Confidence 4789999865 59999995 999999999999999999999999999999999996 7787754321 11
Q ss_pred hhc-cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EIS-GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~-~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
... ...++|++|.+.+++ .++.+++.+.+ ......+.+.++++.+|+.+..++.+.+||||||||++|||||
T Consensus 82 ~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l------~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIP-KAVKGKVGELL------KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhhcccceeeecchhccCc-hHHHHHHHHHh------chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 111 124899999998888 48888887643 1223345678999999999889999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+. +|+++||||||++||+.++..+.++|+++++++ .|||++|||++.+..+||+|++|+ |++
T Consensus 155 ~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~----------~tIIiiSHd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 155 AR-------DADFYFFDEPSSYLDIKQRLNAARLIRELAEDD----------NYVLVVEHDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred Hh-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence 97 599999999999999999999999999998765 599999999999999999999995 667
Q ss_pred EEee
Q 018638 322 VWQG 325 (352)
Q Consensus 322 v~~g 325 (352)
++.|
T Consensus 217 ~~~~ 220 (255)
T cd03236 217 GAYG 220 (255)
T ss_pred Ccce
Confidence 6554
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.6e-44 Score=357.39 Aligned_cols=264 Identities=28% Similarity=0.471 Sum_probs=211.7
Q ss_pred HHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEE
Q 018638 14 LATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLID 93 (352)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (352)
+.+.....|++.+-..+ ...-.++.+-+|+......-+.....-.. |.+.+ .|.
T Consensus 283 Il~gRaLaPid~aI~~W-----kq~~~Ar~s~~Rl~~lL~~~p~~~~~m~L-------------------P~P~g--~L~ 336 (580)
T COG4618 283 ILSGRALAPIDLAIANW-----KQFVAARQSYKRLNELLAELPAAAERMPL-------------------PAPQG--ALS 336 (580)
T ss_pred HHhhhhhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCccccCCCCC-------------------CCCCc--eee
Confidence 33445567777654445 46667788888888877664422211111 22223 499
Q ss_pred EEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 94 CRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 94 ~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+++|++.=++ +++|+++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++..+..+. ..++|||
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~--lG~hiGY 414 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ--LGRHIGY 414 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH--hccccCc
Confidence 9999986543 57999999999999999999999999999999999999999999999999987764332 3458999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHH
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARS 240 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArA 240 (352)
+||+..||+. ||.|||+-.- ...+ .+.+-++.+..|.+++.-+.| ..||||||||++||||
T Consensus 415 LPQdVeLF~G-TIaeNIaRf~---~~~d----~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 415 LPQDVELFDG-TIAENIARFG---EEAD----PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred CcccceecCC-cHHHHHHhcc---ccCC----HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 9999999985 9999996421 1122 234667777788777766665 6899999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|.. +|.+++||||-|+||.+.+..+.+.|.+++++| .|+|+|||+.+.+.. +|+|++|++|+
T Consensus 487 lYG-------~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG----------~~vvviaHRPs~L~~-~Dkilvl~~G~ 548 (580)
T COG4618 487 LYG-------DPFLVVLDEPNSNLDSEGEAALAAAILAAKARG----------GTVVVIAHRPSALAS-VDKILVLQDGR 548 (580)
T ss_pred HcC-------CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcC----------CEEEEEecCHHHHhh-cceeeeecCCh
Confidence 997 599999999999999999999999999999887 599999999998764 69999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
+...|+.+|+.
T Consensus 549 ~~~FG~r~eVL 559 (580)
T COG4618 549 IAAFGPREEVL 559 (580)
T ss_pred HHhcCCHHHHH
Confidence 99999877764
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-43 Score=373.18 Aligned_cols=208 Identities=26% Similarity=0.389 Sum_probs=178.2
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+..+|+++||+++|+++.+|+++||+|.+|+++||+||||||||||+|+|+|+++|++|+|++ |.++
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------- 382 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------- 382 (635)
T ss_pred CCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------
Confidence 3457899999999999888999999999999999999999999999999999999999999998 4321
Q ss_pred ceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+|||++|++ .+++.+||.||+.++.... ... .....+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 383 -~i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~- 457 (635)
T PRK11147 383 -EVAYFDQHRAELDPEKTVMDNLAEGKQEV-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK- 457 (635)
T ss_pred -EEEEEeCcccccCCCCCHHHHHHhhcccc-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-
Confidence 599999986 5888899999998753211 011 1134577889999996 57899999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe-CCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY-EGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~-~G~iv~ 323 (352)
+|++|||||||++||+.++..+.++|+++ . .|||+||||.+++..+||++++|+ +|+++.
T Consensus 458 ------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~-----------~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 458 ------PSNLLILDEPTNDLDVETLELLEELLDSY--Q-----------GTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred ------CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-----------CeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 69999999999999999999999999876 3 389999999999999999999998 899866
Q ss_pred e-eccccc
Q 018638 324 Q-GMTHEF 330 (352)
Q Consensus 324 ~-g~~~~~ 330 (352)
. |+-.++
T Consensus 519 ~~g~y~~y 526 (635)
T PRK11147 519 YVGGYHDA 526 (635)
T ss_pred ccCCHHHH
Confidence 4 444444
No 328
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.1e-43 Score=398.08 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=187.3
Q ss_pred eEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+++|+. ..+|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|+|||.++..... ... +.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~-~~l-R~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL-QTW-RKA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH-HHH-Hhc
Confidence 4999999999963 679999999999999999999999999999999999997 79999999999876532 222 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.+|+. ||++||... ...+ ++++.++|+.++|.++..+.| ..||||||||++|
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~----~~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPY----EQWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCcc----cCCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 9999999999985 999999542 1122 345778899999877665554 3799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+.+...+++.|++..++ +|||+|||+++.+.. ||||++|+
T Consensus 1365 ARALLr-------~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~-----------~TvI~IaHRl~ti~~-~DrIlvL~ 1425 (1490)
T TIGR01271 1365 ARSILS-------KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN-----------CTVILSEHRVEALLE-CQQFLVIE 1425 (1490)
T ss_pred HHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-----------CEEEEEecCHHHHHh-CCEEEEEE
Confidence 999997 59999999999999999999999999986543 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCCcHHHHHHhc
Q 018638 318 EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
+|+|++.|+++++... +....+++.
T Consensus 1426 ~G~ivE~g~p~~Ll~~-~~~f~~l~~ 1450 (1490)
T TIGR01271 1426 GSSVKQYDSIQKLLNE-TSLFKQAMS 1450 (1490)
T ss_pred CCEEEEeCCHHHHHcC-CcHHHHHHH
Confidence 9999999999888753 334444444
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3e-43 Score=323.25 Aligned_cols=189 Identities=21% Similarity=0.283 Sum_probs=159.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-ECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.+.+.+++.+|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~---------------~~~~~~~l~~~lt 65 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL---------------PLGANSFILPGLT 65 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee---------------ccccccccCCcCc
Confidence 379999999999999999999999999999999999999999997 776431 1224567888999
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
++||+.+....+. ...++.. ..+.+.+++....++++.+||||||||++|||||+. +|+++||||||++
T Consensus 66 v~enl~~~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~-------~p~llllDEP~~~ 134 (213)
T PRK15177 66 GEENARMMASLYG-LDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-------PCRLYIADGKLYT 134 (213)
T ss_pred HHHHHHHHHHHcC-CCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhc-------CCCEEEECCCCcc
Confidence 9999998654332 3333322 234466788888899999999999999999999997 6999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
+|+.++..+.+.+.+..++ .|+|++||+++++..+||++++|++|++++.++.++.
T Consensus 135 lD~~~~~~~~~~l~~~~~~-----------~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 135 GDNATQLRMQAALACQLQQ-----------KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred CCHHHHHHHHHHHHHHhhC-----------CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 9999999999988664443 3799999999999999999999999999999977665
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=325.01 Aligned_cols=223 Identities=30% Similarity=0.426 Sum_probs=190.6
Q ss_pred CCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 86 DDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
...+++|+++||+++|+++++|+|+|++|++||..+|+|||||||||||++++|.++|++|.+.+.|+.........+ .
T Consensus 26 ~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~e-l 104 (257)
T COG1119 26 EINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE-L 104 (257)
T ss_pred CCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHH-H
Confidence 345678999999999999999999999999999999999999999999999999999999999999998654322122 3
Q ss_pred cceEEEEecC--CCCCCCCCHHHHHHhhhhhcCC----CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 166 GLRIGLVFQS--AALFDSLTVRENVGFLLYENSK----MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 166 ~~~ig~v~Q~--~~l~~~lTV~eni~~~~~~~~~----~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
+++||||.-. ..+.+..+|+|-+.-+.+...+ ...++..+++..+++.+|+.+..+++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 4579999753 3344567898888765532211 123445677889999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||++ +|++|||||||+|||...++.+.+.|.++... +. .++|+|||..+++....++++.+++
T Consensus 185 ALv~-------~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~---------~~ll~VtHh~eEi~~~~th~lll~~ 248 (257)
T COG1119 185 ALVK-------DPELLILDEPAQGLDLIAREQLLNRLEELAASPGA---------PALLFVTHHAEEIPPCFTHRLLLKE 248 (257)
T ss_pred HHhc-------CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCC---------ceEEEEEcchhhcccccceEEEeeC
Confidence 9997 59999999999999999999999999999754 21 5899999999999999999999999
Q ss_pred CeEEEee
Q 018638 319 GKIVWQG 325 (352)
Q Consensus 319 G~iv~~g 325 (352)
|+++.+|
T Consensus 249 g~v~~~g 255 (257)
T COG1119 249 GEVVAQG 255 (257)
T ss_pred Cceeecc
Confidence 9999887
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-43 Score=368.25 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=170.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++.+|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.++|.. +|+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-------------~i~ 67 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-------------QLA 67 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-------------EEE
Confidence 5899999999999999999999999999999999999999999999999999999999998731 478
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhh-----------------------c---CCCCHHHHHHHHHHHHHHcCCC-cccccC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYE-----------------------N---SKMRDEQISELVKENLAAVGLK-GVEDRL 223 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~-----------------------~---~~~~~~~~~~~v~~~l~~~gL~-~~~~~~ 223 (352)
|++|++..+. .|+.+++...... . ......+...++.++++.+|+. +..+++
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 8888654332 4665554311000 0 0000112345688899999997 578999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
+.+|||||||||+|||||+. +|+||||||||++||+.++..+.+.|+++ + .|||+||||+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~-------~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~----------~tviivsHd~ 206 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALIC-------RSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q----------GTLILISHDR 206 (638)
T ss_pred hhhcCHHHHHHHHHHHHHcc-------CCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C----------CeEEEEeCCH
Confidence 99999999999999999996 69999999999999999999999998775 2 3899999999
Q ss_pred HHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 304 STIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 304 ~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
+++..+||+|++|++|+++ ..|+.+.+
T Consensus 207 ~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 207 DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999996 45655544
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.4e-42 Score=390.38 Aligned_cols=219 Identities=26% Similarity=0.440 Sum_probs=190.9
Q ss_pred CcceEEEEeEEEEeC----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC---CCceEEEECCEeCCCCCC
Q 018638 88 GDVLIDCRNVYKSFG----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA---PDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 88 ~~~~l~~~nls~~y~----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~---p~~G~I~i~G~~~~~~~~ 160 (352)
+..+|+++||+++|+ ++.+|+|||++|++||++||+|||||||||||++|+|+.+ |++|+|++||+++..
T Consensus 756 ~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred CCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 345799999999995 4679999999999999999999999999999999999998 789999999998631
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC----CCChHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS----ELSGGMKKR 234 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~----~LSGGqrQR 234 (352)
.. ++++|||+|++.+++.+||+||+.|....+. ..+.++..++++++++.+||.+..++.++ +||||||||
T Consensus 833 --~~-~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 833 --SF-QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred --hh-hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 12 3369999999888888999999998754321 23445556788999999999998898887 799999999
Q ss_pred HHHHHHHhccCCCCCCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH-HHhhcCE
Q 018638 235 VALARSIIFDNTKESVEPE-VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDR 312 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~-llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~-i~~~aDr 312 (352)
|+|||+|+. +|+ ||||||||+|||+.++..+++.|++++++| .|||+++|+++. +.+.+|+
T Consensus 910 l~Ia~aL~~-------~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g----------~tvI~t~H~~~~~~~~~~D~ 972 (1394)
T TIGR00956 910 LTIGVELVA-------KPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG----------QAILCTIHQPSAILFEEFDR 972 (1394)
T ss_pred HHHHHHHHc-------CCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC----------CEEEEEecCCCHHHHHhcCE
Confidence 999999997 597 999999999999999999999999998776 599999999986 4577999
Q ss_pred EEEEeCC-eEEEeecccc
Q 018638 313 LIFLYEG-KIVWQGMTHE 329 (352)
Q Consensus 313 v~vL~~G-~iv~~g~~~~ 329 (352)
+++|++| ++++.|++.+
T Consensus 973 vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 973 LLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred EEEEcCCCEEEEECCccc
Confidence 9999997 9999997643
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=310.65 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=195.7
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE-----eCCCCCChhh
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR-----KRAGLISDEE 163 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~-----~~~~~~~~~~ 163 (352)
.|.+++++++|.||.....++|||++.+||+.||+|+|||||||||+||++-+.|+.|+|.+.-. ++......++
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 36799999999999999999999999999999999999999999999999999999999998643 2222222211
Q ss_pred --hccceEEEEecCCC--CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHH
Q 018638 164 --ISGLRIGLVFQSAA--LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 164 --~~~~~ig~v~Q~~~--l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIA 238 (352)
..+-..|||.|+|. |-...+..-||..-+..........+.+.+.++|+++.++ ...+..|.++|||||||+.||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 11224899999983 3333344455533221111111234556678899999996 578999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|-|+. .|+++++||||.|||...+..++++++.|..+-. .++|+||||+..+.-++||.++|++
T Consensus 164 RnLVt-------~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~---------la~viVTHDl~VarLla~rlmvmk~ 227 (258)
T COG4107 164 RNLVT-------RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG---------LAVVIVTHDLAVARLLADRLMVMKQ 227 (258)
T ss_pred HHhcc-------CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC---------ceEEEEechhHHHHHhhhcceeecC
Confidence 99996 6999999999999999999999999999987631 6899999999999999999999999
Q ss_pred CeEEEeecccccc-cCCcHHHHHHhcCCC
Q 018638 319 GKIVWQGMTHEFT-SSSNPIVQQFASGSL 346 (352)
Q Consensus 319 G~iv~~g~~~~~~-~~~~~~~~~~~~~~~ 346 (352)
|++++.|-+..++ .+.+|+++-+.+..+
T Consensus 228 g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 228 GQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred CCEeccccccccccCCCCchHHHHHHHhc
Confidence 9999999888866 567899988876544
No 334
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.5e-43 Score=366.44 Aligned_cols=207 Identities=29% Similarity=0.482 Sum_probs=182.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
+++.+|+|||++|++||+++|+|||||||||||++|+|..+|. +|+|.++|+++.. ... ++.+|||+|++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~~-~~~i~yv~Q~~~~ 110 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KEM-RAISAYVQQDDLF 110 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HHH-hhhceeecccccc
Confidence 3567999999999999999999999999999999999999885 8999999998631 222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC------CCChHHHHHHHHHHHHhccCCCCCC
Q 018638 179 FDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS------ELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~------~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
++.+||+|||.|+..... ..+.++..++++++++.+||.+..+..++ .|||||||||+|||+|+.
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~------- 183 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT------- 183 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc-------
Confidence 999999999999764321 23455667789999999999988888876 599999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++++|||||+|||+.+...+++.|++++++| .|||+++|+++ .+.+++|++++|++|++++.|++++
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG----------KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC----------CEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence 599999999999999999999999999998766 59999999995 7888999999999999999998876
Q ss_pred c
Q 018638 330 F 330 (352)
Q Consensus 330 ~ 330 (352)
+
T Consensus 254 ~ 254 (617)
T TIGR00955 254 A 254 (617)
T ss_pred H
Confidence 5
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=315.53 Aligned_cols=221 Identities=32% Similarity=0.448 Sum_probs=186.0
Q ss_pred eEEEEeEEEEeC-----CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFG-----EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~-----~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
|+.+.|+.+.|. .+++|+++||+|++|+++.|||.||||||||+++|+|-+.|++|+|.|+|.++......+ +
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~--R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK--R 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH--H
Confidence 567888888884 367999999999999999999999999999999999999999999999999997653322 2
Q ss_pred cceEEEEecCC--CCCCCCCHHHHHHhhhhhc--CCCCH---HHHHHHHHHHHHHc--CCCcccccCCCCCChHHHHHHH
Q 018638 166 GLRIGLVFQSA--ALFDSLTVRENVGFLLYEN--SKMRD---EQISELVKENLAAV--GLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 166 ~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~--~~~~~---~~~~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRva 236 (352)
...++-|||+| ..++.+||+||+++...+. ++... ....+...+.++.+ ||++.++.++.-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 33589999998 5699999999998865431 12221 22233345556665 4578899999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|+.|.++ .|+||+|||-|++|||.....++++=.++.++.+ .|.+||||+|+.+.+|.+|.++|
T Consensus 159 L~MAtl~-------~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~k---------lTtlMVTHnm~~Al~yG~RlImL 222 (263)
T COG1101 159 LLMATLH-------PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK---------LTTLMVTHNMEDALDYGNRLIML 222 (263)
T ss_pred HHHHhcC-------CCcEEEecchhhcCCcchHHHHHHHHHHHHHhcC---------CceEEEeccHHHHHhhCCeEEEE
Confidence 9999997 6999999999999999999999999999987754 69999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|+|+.+-.-++
T Consensus 223 h~G~IvlDv~g~~ 235 (263)
T COG1101 223 HSGKIVLDVTGEE 235 (263)
T ss_pred eCCeEEEEccccc
Confidence 9999998764433
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.7e-42 Score=363.67 Aligned_cols=202 Identities=28% Similarity=0.475 Sum_probs=170.1
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.++|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|++++. .
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-------------~ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-------------V 572 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-------------e
Confidence 468999999999964 56999999999999999999999999999999999999999999998642 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYE-NSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+|||++|++. +.+++.+|..+.... ..... .+.+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 573 ~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-- 644 (718)
T PLN03073 573 RMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-- 644 (718)
T ss_pred eEEEEecccc--ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc--
Confidence 5999999862 345666665432211 11112 34578899999997 47899999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Ee
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~ 324 (352)
+|++|||||||++||+.++..+.+.|.++ ++ |||+||||++++..+|||+++|++|+++ +.
T Consensus 645 -----~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-----------tvIivSHd~~~i~~~~drv~~l~~G~i~~~~ 706 (718)
T PLN03073 645 -----KPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-----------GVLMVSHDEHLISGSVDELWVVSEGKVTPFH 706 (718)
T ss_pred -----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-----------EEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999988877664 33 8999999999999999999999999998 56
Q ss_pred ecccc
Q 018638 325 GMTHE 329 (352)
Q Consensus 325 g~~~~ 329 (352)
|+..+
T Consensus 707 g~~~~ 711 (718)
T PLN03073 707 GTFHD 711 (718)
T ss_pred CCHHH
Confidence 75544
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.9e-42 Score=362.17 Aligned_cols=193 Identities=23% Similarity=0.299 Sum_probs=163.2
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------KGK 516 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-------------CCc
Confidence 3699999999995 56799999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC---------CCCChHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVALAR 239 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSGGqrQRvaIAr 239 (352)
++||||++.+++. |++||+.++.............+++.++++.++++++.+++. .+||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999999986 999999886421100001111345778899999987776643 799999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||++ +|+++||||||++||+.++..+.+.+++. | .|+|+|||+++.+ +.||++++|+
T Consensus 596 al~~-------~p~illLDEpts~LD~~~~~~l~~~l~~~---~----------~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 596 LFYH-------KPQFAILDECTSAVSVDVEGYMYRLCREF---G----------ITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred HHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEeCchHHH-HhCCEEEEEe
Confidence 9997 69999999999999999999999988763 4 5999999999987 5689999996
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.4e-42 Score=361.23 Aligned_cols=205 Identities=30% Similarity=0.430 Sum_probs=167.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|+++.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-------------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-------------IVA 69 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-------------EEE
Confidence 6999999999999899999999999999999999999999999999999999999999998631 266
Q ss_pred EEecCCCCCCCCCHHHHHHhhh------------------------------hh---cCCCCHHHHHHHHHHHHHHcCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLL------------------------------YE---NSKMRDEQISELVKENLAAVGLK 217 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~------------------------------~~---~~~~~~~~~~~~v~~~l~~~gL~ 217 (352)
|++|++......+|.+++..+. .. ...........++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7777653322345655542110 00 00000112345678899999996
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 018638 218 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (352)
Q Consensus 218 ~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI 297 (352)
.++++.+|||||||||+|||||+. +|+||||||||++||+.++..+.++|+++. + |||
T Consensus 150 --~~~~~~~LSgGekqRv~LAraL~~-------~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~-----------tvl 207 (635)
T PRK11147 150 --PDAALSSLSGGWLRKAALGRALVS-------NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--G-----------SII 207 (635)
T ss_pred --CCCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCCccCHHHHHHHHHHHHhCC--C-----------EEE
Confidence 388999999999999999999997 699999999999999999999999998872 2 899
Q ss_pred EEcCCHHHHHhhcCEEEEEeCCeEEE-eeccccc
Q 018638 298 VVTHQHSTIRRAVDRLIFLYEGKIVW-QGMTHEF 330 (352)
Q Consensus 298 ivTHdl~~i~~~aDrv~vL~~G~iv~-~g~~~~~ 330 (352)
+||||.+++..+||+|++|++|+++. .|+..++
T Consensus 208 ivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 208 FISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99999999999999999999999974 5766554
No 339
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=347.23 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=181.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
-|+++||+|.|+ ++++|+||||++.+|+.+|||||||+||||++|+|.++.+.++|.|.|||+|+....... .|..|
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~S--LRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS--LRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHH--HHHhc
Confidence 399999999995 688999999999999999999999999999999999999999999999999986432111 23479
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
|.||||..||++ |+..||.|+. ...+. +++.++.+..++++..-..| -.||||||||||||
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak---~~Asn----eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAK---PSASN----EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred CcccCcceeecc-eeeeheeecC---CCCCh----HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 999999999985 9999998853 11223 33555566666655444333 48999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|++++ .|.+++|||.||+||..+++.++..|.++... .|-|+|.|+++++-+ ||.|+++++
T Consensus 687 RtiLK-------~P~iIlLDEATSALDT~tER~IQaaL~rlca~-----------RTtIVvAHRLSTivn-AD~ILvi~~ 747 (790)
T KOG0056|consen 687 RTILK-------APSIILLDEATSALDTNTERAIQAALARLCAN-----------RTTIVVAHRLSTIVN-ADLILVISN 747 (790)
T ss_pred HHHhc-------CCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-----------CceEEEeeeehheec-ccEEEEEeC
Confidence 99998 49999999999999999999999999999875 388999999999987 699999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|.-+|+...
T Consensus 748 G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 748 GRIVERGRHEELLKR 762 (790)
T ss_pred CeEeecCcHHHHHhc
Confidence 999999976676544
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=7.7e-42 Score=295.87 Aligned_cols=144 Identities=38% Similarity=0.648 Sum_probs=135.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|++++|++..+|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-------------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-------------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-------------EEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999984 15999
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+|| ||+||+||++|||||+. +
T Consensus 68 ~~~----------------------------------------------------lS~G~~~rv~laral~~-------~ 88 (144)
T cd03221 68 FEQ----------------------------------------------------LSGGEKMRLALAKLLLE-------N 88 (144)
T ss_pred Ecc----------------------------------------------------CCHHHHHHHHHHHHHhc-------C
Confidence 999 99999999999999997 6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|+++||||||++||+.++..+.+.|+++ + .|+|++||+++++..+||++++|++||
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~----------~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---P----------GTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---C----------CEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999886 2 389999999999999999999999986
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-41 Score=305.14 Aligned_cols=157 Identities=29% Similarity=0.412 Sum_probs=140.0
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEec
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q 174 (352)
.||+|+|+++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ .++|++|
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--------------~i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--------------TPVYKPQ 68 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--------------EEEEEcc
Confidence 5899999999999985 999999999999999999999999999999999999999985 2789998
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcE
Q 018638 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV 254 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~l 254 (352)
++. ||||||||++|||||+. +|++
T Consensus 69 ~~~-------------------------------------------------LSgGq~qrv~laral~~-------~p~l 92 (177)
T cd03222 69 YID-------------------------------------------------LSGGELQRVAIAAALLR-------NATF 92 (177)
T ss_pred cCC-------------------------------------------------CCHHHHHHHHHHHHHhc-------CCCE
Confidence 643 99999999999999997 6999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe--ecccccc
Q 018638 255 LLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ--GMTHEFT 331 (352)
Q Consensus 255 lLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~--g~~~~~~ 331 (352)
+||||||++||+.++..+.+.|++++++++ .|||++||+++++..+||++++|+++-.+.+ |.|....
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGK---------KTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999999976631 4999999999999999999999998865543 5454333
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-41 Score=383.79 Aligned_cols=234 Identities=29% Similarity=0.445 Sum_probs=187.1
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl 112 (352)
.....+..+.+|+......+......+. +.......|+++|++++|+. +++|+|+||
T Consensus 579 ~~~~~a~~s~~RI~~~L~~~e~~~~~~~--------------------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 579 TQAVNANVSLKRLEELLLAEERVLLPNP--------------------PLEPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccCC--------------------cccCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 4556677888888888776543211100 00001124999999999964 569999999
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
+|++|+.++|+||+|||||||+++|+|+++|++ |+|.+.| +|+||+|+|.+|+ .||+|||.|+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------------~Iayv~Q~p~Lfn-gTIreNI~fg 702 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------------TVAYVPQVSWIFN-ATVRDNILFG 702 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---------------eEEEEcCccccCC-CCHHHHHhCC
Confidence 999999999999999999999999999999999 8998532 5999999999997 5999999996
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
.. .+ ++++.++++.++|.+..+..| ..|||||||||+||||+++ +|+|+|||||
T Consensus 703 ~~----~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~-------~~~IlLLDEp 767 (1622)
T PLN03130 703 SP----FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS-------NSDVYIFDDP 767 (1622)
T ss_pred Cc----cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC-------CCCEEEECCC
Confidence 31 22 345677788888866554443 5799999999999999997 5999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 261 TAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 261 tsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
||+||+...+.+. +.++.+. ++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 768 tSALD~~~~~~I~~~~l~~~l-~~----------kTvIlVTH~l~~l~~-aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDEL-RG----------KTRVLVTNQLHFLSQ-VDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHh-cC----------CEEEEEECCHhHHHh-CCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999988775 5566553 33 599999999998765 79999999999999998777653
No 343
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.2e-41 Score=377.65 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=186.8
Q ss_pred eEEEEeEEEEeC-------------CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeC
Q 018638 91 LIDCRNVYKSFG-------------EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKR 155 (352)
Q Consensus 91 ~l~~~nls~~y~-------------~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~ 155 (352)
.+.++||++..+ .+.+|+|||++|++|++++|+|||||||||||++|+|+.++ .+|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 599999999873 24699999999999999999999999999999999999874 789999999874
Q ss_pred CCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCC-----CCCC
Q 018638 156 AGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLP-----SELS 228 (352)
Q Consensus 156 ~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LS 228 (352)
. .... ++.+|||+|++.+++.+||+||+.|..... ...+.++..+.++++++.+||.+..++.+ ..||
T Consensus 947 ~----~~~~-~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 947 K----QETF-ARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred C----hHHh-hhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 2 1112 235999999999999999999999875332 12344455667899999999998888886 5899
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHH
Q 018638 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIR 307 (352)
Q Consensus 229 GGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~ 307 (352)
|||||||+||++|+. +|+||+|||||+|||+.++..+++.|++++++| .|||+++|+++ .+.
T Consensus 1022 gGerkRvsIa~aL~~-------~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g----------~tVI~t~Hq~~~~i~ 1084 (1470)
T PLN03140 1022 TEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG----------RTVVCTIHQPSIDIF 1084 (1470)
T ss_pred HHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCCCHHHH
Confidence 999999999999997 699999999999999999999999999998876 59999999998 577
Q ss_pred hhcCEEEEEeC-CeEEEeeccc
Q 018638 308 RAVDRLIFLYE-GKIVWQGMTH 328 (352)
Q Consensus 308 ~~aDrv~vL~~-G~iv~~g~~~ 328 (352)
+.+|++++|++ |+++..|++.
T Consensus 1085 ~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1085 EAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HhCCEEEEEcCCCEEEEECCcc
Confidence 89999999996 8999999764
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-41 Score=381.86 Aligned_cols=248 Identities=27% Similarity=0.387 Sum_probs=191.0
Q ss_pred HhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeE
Q 018638 18 SVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNV 97 (352)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl 97 (352)
.+..|+..+.... .....+..+.+|+......|+...... . ........|+++|+
T Consensus 566 ~l~~pl~~l~~~~-----~~~~~a~~s~~Ri~~~L~~~~~~~~~~--------~------------~~~~~~~~I~~~~v 620 (1495)
T PLN03232 566 VLRSPLNMLPNLL-----SQVVNANVSLQRIEELLLSEERILAQN--------P------------PLQPGAPAISIKNG 620 (1495)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCcccccccc--------C------------CcCCCCCcEEEEee
Confidence 3344554444433 456677888899988887764211000 0 00011124999999
Q ss_pred EEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEec
Q 018638 98 YKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 174 (352)
Q Consensus 98 s~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q 174 (352)
+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.. + +.+|+||+|
T Consensus 621 sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----~----------~~~Iayv~Q 686 (1495)
T PLN03232 621 YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----I----------RGSVAYVPQ 686 (1495)
T ss_pred EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----e----------cCcEEEEcC
Confidence 999964 56999999999999999999999999999999999999999987631 1 225999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhc
Q 018638 175 SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIF 243 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~ 243 (352)
+|.+|+ .||+|||.|+.. .++ +++.++++.++|.+..+..| ..|||||||||+||||+++
T Consensus 687 ~p~Lf~-gTIreNI~fg~~----~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGSD----FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred cccccc-ccHHHHhhcCCc----cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 999997 599999998631 232 34666777778765544443 4799999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|+|+|||||||+||+.+.+.+++ ++..+. ++ +|+|+|||+++.+. .||+|++|++|+|+
T Consensus 758 -------~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~----------kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 758 -------NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KG----------KTRVLVTNQLHFLP-LMDRIILVSEGMIK 818 (1495)
T ss_pred -------CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cC----------CEEEEEECChhhHH-hCCEEEEEeCCEEE
Confidence 599999999999999999988865 455443 33 59999999999876 58999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+.+++..
T Consensus 819 ~~Gt~~eL~~ 828 (1495)
T PLN03232 819 EEGTFAELSK 828 (1495)
T ss_pred EecCHHHHHh
Confidence 9998777653
No 345
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-41 Score=304.86 Aligned_cols=222 Identities=27% Similarity=0.455 Sum_probs=195.2
Q ss_pred ceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+.+-+++ .+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.|+|+++..+. ..++++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~-~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS-PDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-HhHHHh
Confidence 479999999999985 9999999999999999999999999999999999986 679999999999998864 455566
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC--HHHHHHHHHHHHHHcCCCc-ccccCCC-CCChHHHHHHHHHHHHh
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMR--DEQISELVKENLAAVGLKG-VEDRLPS-ELSGGMKKRVALARSII 242 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~--~~~~~~~v~~~l~~~gL~~-~~~~~~~-~LSGGqrQRvaIArAL~ 242 (352)
..|.+.||.|.=+|..|+.+.+........+.. ..+..+++++.++.+++++ +++|.+. .+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 789999999999999999999987664322211 2355677899999999976 8888885 69999999999999998
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc-CEEEEEeCCeE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV-DRLIFLYEGKI 321 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a-Drv~vL~~G~i 321 (352)
. +|++.|||||-||||..+-+.+-+.+.+++.+| .++++|||....+..+- |+|.||-+|+|
T Consensus 161 l-------ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~----------~~~liITHy~rll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 161 L-------EPKLAILDEPDSGLDIDALKIVAEGINALREEG----------RGVLIITHYQRLLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred c-------CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC----------CeEEEEecHHHHHhhcCCCEEEEEECCEE
Confidence 5 799999999999999999999999999999887 58999999988776553 99999999999
Q ss_pred EEeeccccc
Q 018638 322 VWQGMTHEF 330 (352)
Q Consensus 322 v~~g~~~~~ 330 (352)
+.+|.+ ++
T Consensus 224 v~sG~~-el 231 (251)
T COG0396 224 VKSGDP-EL 231 (251)
T ss_pred EecCCH-HH
Confidence 999988 54
No 346
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-42 Score=319.18 Aligned_cols=206 Identities=30% Similarity=0.513 Sum_probs=175.7
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe-cCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF-QSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~-Q~~~l~~~lT 183 (352)
.+++||||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+.... .+.. -+++++|+ |-..++-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~--~~~~-~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR--REEY-LRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh--HHHH-HHHHHHHhhhhheeeeech
Confidence 488999999999999999999999999999999999999999999999876431 1111 12588876 4445554566
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.+-+......+ ..+.++..++...+.+.++|+++++.+++.||-|||.|+.||.||++ +|+||+|||||-|
T Consensus 115 ~~ds~~v~~~Iy-~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh-------~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY-EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH-------PPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH-hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcC-------CCcEEEecCCccC
Confidence 666654432222 35677888899999999999999999999999999999999999998 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
||..++..+.+.+++..++.. +||+++||+++.+..+||||++|+.|+++.+|+..++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~---------aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQ---------ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhC---------ceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 999999999999999976532 7999999999999999999999999999999877665
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-40 Score=376.83 Aligned_cols=238 Identities=24% Similarity=0.330 Sum_probs=186.6
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC--eeeeEeeeEE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE--KHILRGVSFK 113 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~--~~~L~~vsl~ 113 (352)
........+.+|+......+..+...... .. ........|+++|++++|++ +++|+|+||+
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--------------~~---~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~ 660 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIER--------------RT---IKPGEGNSITVHNATFTWARDLPPTLNGITFS 660 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccc--------------cc---cCCCCCCcEEEEEeEEEcCCCCCceeeeeEEE
Confidence 45566778888998888766432110000 00 00011125999999999974 5799999999
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||+|++.+|+ .||+|||.|+..
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~i~yv~Q~~~l~~-~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------SVAYVPQQAWIQN-DSLRENILFGKA 724 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---------------EEEEEcCCccccC-CcHHHHhhcCCc
Confidence 999999999999999999999999999999999999986 3899999999886 699999998642
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCC-----------CcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 194 ENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.+.+.. +++++.+++ +....+.+.+|||||||||+||||++. +|+++||||||+
T Consensus 725 ----~~~~~~----~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~-------~~~illLDEp~s 789 (1522)
T TIGR00957 725 ----LNEKYY----QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS-------NADIYLFDDPLS 789 (1522)
T ss_pred ----cCHHHH----HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEcCCcc
Confidence 222222 222333222 223456788999999999999999997 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHH--HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 263 GLDPIASTVVEDLIRSVH--KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~--~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
+||+.+++.+++.+.+.. .++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~----------~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKN----------KTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcC----------CEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999887532 233 599999999999876 89999999999999998877653
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-40 Score=307.10 Aligned_cols=196 Identities=33% Similarity=0.463 Sum_probs=175.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+|+||||++++||.+||||+||||||||+|+|+|.++||+|+|.++|+-.. .. .+| ..+-|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-------li--~lg-----~Gf~pelT 105 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-------LI--ELG-----AGFDPELT 105 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-------hh--hcc-----cCCCcccc
Confidence 46999999999999999999999999999999999999999999999996311 01 112 23457799
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
.+|||.+.... .++..+++++++++..+..+|.++.++++.++|-||+-|+++|.|... +|+|||+||-.+.
T Consensus 106 GreNi~l~~~~-~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~-------~pdILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLI-LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHV-------EPDILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhc-------CCCEEEEehhhhc
Confidence 99999886543 357789999999999999999999999999999999999999999975 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.|+.-++.-.+.+.++.+++ .|+|+||||++.+.++|||+++|++|+|...|+++++.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~----------~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKN----------KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999997775 49999999999999999999999999999999998864
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.8e-41 Score=351.01 Aligned_cols=195 Identities=29% Similarity=0.434 Sum_probs=163.4
Q ss_pred EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChh
Q 018638 95 RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDE 162 (352)
Q Consensus 95 ~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~ 162 (352)
++++++||.. .+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|+++.......
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3489999874 6999999 9999999999999999999999999999999999997 8998764211000
Q ss_pred hhccceEEEEecC----CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH
Q 018638 163 EISGLRIGLVFQS----AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 163 ~~~~~~ig~v~Q~----~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA 238 (352)
.....++++.+|. +.+|. .||.||+.+. +..+++.++++.++|....++.+.+|||||||||+||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred hccCcceeecccchhhhhhhhc-chHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0111235665654 44443 3999998641 1234578899999999899999999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+||+. +|++|||||||++||+..+..+.++|+++++ | .|||+||||++++..+||+|++|++
T Consensus 225 ~al~~-------~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g----------~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 225 AALLR-------DADFYFFDEPTSYLDIRQRLNVARLIRELAE-G----------KYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C----------CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99997 6999999999999999999999999999977 6 5999999999999999999999987
Q ss_pred C
Q 018638 319 G 319 (352)
Q Consensus 319 G 319 (352)
+
T Consensus 287 ~ 287 (590)
T PRK13409 287 E 287 (590)
T ss_pred C
Confidence 3
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-40 Score=286.24 Aligned_cols=156 Identities=44% Similarity=0.746 Sum_probs=141.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.... ... ...+++|+|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~-~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEE-LRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHH-HHhceEEEe
Confidence 689999998888999999999999999999999999999999999999999999999998765321 111 123699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
| |||||+||++||||++. +|+
T Consensus 80 q----------------------------------------------------lS~G~~~r~~l~~~l~~-------~~~ 100 (157)
T cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLL-------NPD 100 (157)
T ss_pred e----------------------------------------------------CCHHHHHHHHHHHHHhc-------CCC
Confidence 9 99999999999999996 599
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
++||||||++||+.++..+.+.|.++.+++ .|+|++||+++++..+||++++|++|+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEG----------RTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999987764 599999999999999999999999875
No 351
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-41 Score=327.53 Aligned_cols=214 Identities=32% Similarity=0.506 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+.++||+|.|+ .+++|+++||++++|+.++|+||+|+||||++++|.+++++++|.|.+||+++....... .++-|
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s--lR~aI 339 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS--LRRAI 339 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH--HHHHh
Confidence 388999999995 578999999999999999999999999999999999999999999999999986542222 23359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIA 238 (352)
|.|||+..||.+ |++.|+.++.. ... .+.+..+++.+.+.++....| -.|||||||||+||
T Consensus 340 g~VPQDtvLFND-ti~yni~ygr~---~at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 340 GIVPQDTVLFND-TIAYNIKYGRP---DAT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred CcCcccceehhh-hHHHHHhccCc---ccc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 999999999975 99999998531 122 334566677777766666655 47999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|++++ +|+||+|||.||+||..++++++..|+++.+. .|-++|.|+++++.. ||.|+||++
T Consensus 412 r~ilk-------~p~il~~deatsaldt~te~~iq~~l~~~~~~-----------rttlviahrlsti~~-adeiivl~~ 472 (497)
T COG5265 412 RTILK-------NPPILILDEATSALDTHTEQAIQAALREVSAG-----------RTTLVIAHRLSTIID-ADEIIVLDN 472 (497)
T ss_pred HHHhc-------CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCC-----------CeEEEEeehhhhccC-CceEEEeeC
Confidence 99998 59999999999999999999999999998743 489999999999998 599999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|+-++++..
T Consensus 473 g~i~erg~h~~ll~~ 487 (497)
T COG5265 473 GRIVERGTHEELLAA 487 (497)
T ss_pred CEEEecCcHHHHHHc
Confidence 999999966666544
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.6e-40 Score=370.02 Aligned_cols=208 Identities=23% Similarity=0.294 Sum_probs=176.5
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC----CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~----~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
.+.+|+|||+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++... . ...+..++||+|+..+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~--~-~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI--K-KHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH--H-hhcCceeEEecccccc
Confidence 467999999999999999999999999999999999996 57999999999976321 1 1123359999999999
Q ss_pred CCCCCHHHHHHhhhhhcC------CCCHHHHHHH-HHHHHHHcCCCcccccC-----CCCCChHHHHHHHHHHHHhccCC
Q 018638 179 FDSLTVRENVGFLLYENS------KMRDEQISEL-VKENLAAVGLKGVEDRL-----PSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~------~~~~~~~~~~-v~~~l~~~gL~~~~~~~-----~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++.+||+||+.|+..... ...+++..++ ++++++.+||++..+++ +..|||||||||+||++|+.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--- 226 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--- 226 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh---
Confidence 999999999999764321 1233333333 46689999998777654 57899999999999999997
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCCeEEEe
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|+|++|||||+|||+.++..+.+.|++++++ | .|||+++|++ +.+.+++|+|++|++|+++..
T Consensus 227 ----~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g----------~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 227 ----GAKIQCWDNATRGLDSATALEFIRALKTSANILD----------TTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred ----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 69999999999999999999999999999875 5 5999999996 789999999999999999999
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
|+++++
T Consensus 293 G~~~~~ 298 (1394)
T TIGR00956 293 GPADKA 298 (1394)
T ss_pred CCHHHH
Confidence 988765
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-40 Score=285.59 Aligned_cols=202 Identities=33% Similarity=0.507 Sum_probs=173.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
++.++||+.+.++...|-+|||+|.+||++-|+||||||||||+.-+.|.+.++ +|+++++++++..+.. .++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----AQR 77 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch----hhh
Confidence 588999999999999999999999999999999999999999999999999986 8999999999865432 234
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
++|++||++.|||+++|.+|+.|.+-.. ..-++.+..+..+|++.||.+..++.|.+||||||-||++-|+|+.
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~--~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla---- 151 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPAT--LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA---- 151 (213)
T ss_pred heeeeecccccccccccccceEEecCcc--cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh----
Confidence 7999999999999999999999976321 2223445567889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l-~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+|+.+|||||+|.||..-+.++.+.+-.- +..| ...|+||||+..+. ...||+-|
T Consensus 152 ---~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag----------iPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 152 ---QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG----------IPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred ---CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcC----------CCeEEEecccccCC-CCCeeeee
Confidence 69999999999999999999999887654 4445 57899999999876 44455433
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-39 Score=364.90 Aligned_cols=197 Identities=25% Similarity=0.433 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++++|+++. .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +|+|
T Consensus 429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------------~iay 491 (1490)
T TIGR01271 429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------------RISF 491 (1490)
T ss_pred ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------------EEEE
Confidence 556666553 35689999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-----------ccccCCCCCChHHHHHHHHHHH
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-----------VEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSGGqrQRvaIArA 240 (352)
++|++.+|+ .||+|||.|+.. .+.+. ..++++.++|.+ .....+.+|||||||||+||||
T Consensus 492 v~Q~~~l~~-~Ti~eNI~~g~~----~~~~~----~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 492 SPQTSWIMP-GTIKDNIIFGLS----YDEYR----YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562 (1490)
T ss_pred EeCCCccCC-ccHHHHHHhccc----cchHH----HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHH
Confidence 999999998 499999998742 12111 122222223221 2345678999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~l-l~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
++. +|+++||||||++||+..+..+++. +.++.+ + +|+|+|||+++.+.. ||+|++|++|
T Consensus 563 l~~-------~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~----------~tvilvtH~~~~~~~-ad~ii~l~~g 623 (1490)
T TIGR01271 563 VYK-------DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-N----------KTRILVTSKLEHLKK-ADKILLLHEG 623 (1490)
T ss_pred HHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-C----------CeEEEEeCChHHHHh-CCEEEEEECC
Confidence 997 5999999999999999999999974 666643 4 599999999999875 8999999999
Q ss_pred eEEEeecccccccC
Q 018638 320 KIVWQGMTHEFTSS 333 (352)
Q Consensus 320 ~iv~~g~~~~~~~~ 333 (352)
++++.|+.+++...
T Consensus 624 ~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 624 VCYFYGTFSELQAK 637 (1490)
T ss_pred EEEEEcCHHHHHhc
Confidence 99999988887643
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=334.00 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=176.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++||++.+|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|.+.+. .+|
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-------------~~v 68 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-------------LRV 68 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-------------ceE
Confidence 4699999999999999999999999999999999999999999999999999999999987642 169
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCC-----------------------------CHHHHHHHHHHHHHHcCCCccc
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKM-----------------------------RDEQISELVKENLAAVGLKGVE 220 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~-----------------------------~~~~~~~~v~~~l~~~gL~~~~ 220 (352)
+|++|++.+.+..||.+.+..+....... ..-+.+.++..+|..+|+...
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999998889999887654211000 001123456778888888877
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++++||||||.||+||+||+. +|++|||||||++||..+...+.+.|.+. +| |+|+||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~-------~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-----------tviiVS 207 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLE-------EPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-----------TVIVVS 207 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc-------CCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-----------cEEEEe
Confidence 99999999999999999999997 69999999999999999999999998753 33 899999
Q ss_pred CCHHHHHhhcCEEEEEeCCeEEE-eeccccc
Q 018638 301 HQHSTIRRAVDRLIFLYEGKIVW-QGMTHEF 330 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~G~iv~-~g~~~~~ 330 (352)
||-+++.++|++|+.++.|++.. .|.-+.+
T Consensus 208 HDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 208 HDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred CCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 99999999999999999998754 4544443
No 356
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-39 Score=289.69 Aligned_cols=156 Identities=25% Similarity=0.297 Sum_probs=134.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+++|+|+||+|++|++++|+||||||||||||++. +++|+|.++|... . . .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~---~---~~~~~~~~~q--------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K---F---SRNKLIFIDQ--------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c---c---ccccEEEEhH---------
Confidence 57999999999999999999999999999999985 3799999987631 1 1 1224788877
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCC--CcEEEEeCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEP 260 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~--p~llLLDEP 260 (352)
.++++.++|.. ..++++.+||||||||++|||||+. + |+++|||||
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~-------~~~p~llLlDEP 116 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFS-------EPPGTLFILDEP 116 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhh-------CCCCCEEEEeCC
Confidence 24678889876 4789999999999999999999996 7 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
|++||+.++..+.+.|++++++| .|||+|||+++++ ..||++++|++|+.
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g----------~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLG----------NTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999999999999999997665 5999999999987 57999999977654
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-39 Score=364.98 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=174.9
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
.+.+|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|+..++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-----PRKTSAYISQNDVHV 251 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-----ccceeEEecccccCC
Confidence 356999999999999999999999999999999999999998 999999999864321 133699999999999
Q ss_pred CCCCHHHHHHhhhhhcCC---------CCHHHH------------------------HHHHHHHHHHcCCCccc-----c
Q 018638 180 DSLTVRENVGFLLYENSK---------MRDEQI------------------------SELVKENLAAVGLKGVE-----D 221 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~---------~~~~~~------------------------~~~v~~~l~~~gL~~~~-----~ 221 (352)
+.+||+||+.|+...... ...++. ...++++++.+||++.. +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999997642210 011110 11356789999997654 5
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEc
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVT 300 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivT 300 (352)
+.++.|||||||||+||++|+. +|++++|||||+|||+.+..++.+.|++++++ | .|+|+++
T Consensus 332 ~~~rglSGGerkRVsia~aL~~-------~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g----------~Tviis~ 394 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVG-------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE----------ATVLMSL 394 (1470)
T ss_pred ccccCCCcccceeeeehhhhcC-------CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcC----------CEEEEEe
Confidence 6778999999999999999997 69999999999999999999999999999764 4 5999999
Q ss_pred CCH-HHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 301 HQH-STIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 301 Hdl-~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+. +++.+++|+|++|++|+++..|+++++
T Consensus 395 Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 395 LQPAPETFDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred cCCCHHHHHHhheEEEeeCceEEEeCCHHHH
Confidence 996 688899999999999999999987765
No 358
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-39 Score=351.65 Aligned_cols=223 Identities=29% Similarity=0.475 Sum_probs=203.0
Q ss_pred ceEEEEeEEEEeCCee-eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKH-ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~-~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
..+.++|++|.|+.+. +++++||.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++..... ....++.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~-~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD-FQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc-hhhhhhh
Confidence 4689999999999877 9999999999999999999999999999999999999999999999998754322 2223446
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||+||...+++.+|.+|++.+... .++.+..++.+.++.+++.++|.+..+++.+.+|||+|+|+++|.|++.
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~ar-lrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig----- 715 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYAR-LRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG----- 715 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHH-HcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc-----
Confidence 9999999999999999999998764 4456777888889999999999999999999999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++++|||||+|+||.+++.+++++.+++++| ..||++||.+++++.+|||+.+|.+|++...|++.
T Consensus 716 --~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g----------~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 716 --DPSVILLDEPSTGLDPKARRHLWDIIARLRKNG----------KAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred --CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 599999999999999999999999999999876 38999999999999999999999999999999887
Q ss_pred ccc
Q 018638 329 EFT 331 (352)
Q Consensus 329 ~~~ 331 (352)
++.
T Consensus 784 ~LK 786 (885)
T KOG0059|consen 784 ELK 786 (885)
T ss_pred HHH
Confidence 763
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.1e-39 Score=342.80 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=168.1
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC---CCCceEEEECCEeCCCCC-Ch---
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYIRGRKRAGLI-SD--- 161 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~---~p~~G~I~i~G~~~~~~~-~~--- 161 (352)
..+|+++|++++|+++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++.+.... ..
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 35799999999999888999999999999999999999999999999999964 588999987655432110 00
Q ss_pred -----hh---hccceEEEEecCCCCCCCCCHHHHHHhh-----------------hhhcCCCCHHHHHHHHHHHHHHcCC
Q 018638 162 -----EE---ISGLRIGLVFQSAALFDSLTVRENVGFL-----------------LYENSKMRDEQISELVKENLAAVGL 216 (352)
Q Consensus 162 -----~~---~~~~~ig~v~Q~~~l~~~lTV~eni~~~-----------------~~~~~~~~~~~~~~~v~~~l~~~gL 216 (352)
.+ ..+..++|++|++.+... ++.+|.... +...........++++.++|..+|+
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 00 011236788887644221 222222110 0000001111334567788888999
Q ss_pred C-cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 018638 217 K-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (352)
Q Consensus 217 ~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t 295 (352)
. +..++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.+.|+++ + .|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~----------~t 393 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFI-------EPDLLLLDEPTNHLDLHAVLWLETYLLKW---P----------KT 393 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHc---C----------CE
Confidence 5 56788999999999999999999996 69999999999999999999999999886 3 49
Q ss_pred EEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeeccccc
Q 018638 296 YVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMTHEF 330 (352)
Q Consensus 296 vIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~~~~ 330 (352)
||+||||++++..+||+|++|++|+++ ..|+..++
T Consensus 394 viivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999996 56655443
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=285.55 Aligned_cols=193 Identities=32% Similarity=0.488 Sum_probs=167.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++.+|++...+++.++.++||++.+||++-|.||||||||||||+|+||++|++|+|+|+|..+..... .. ...+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~--~~-~~~l~ 78 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE--SY-HQALL 78 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh--hH-HHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999987654211 11 22477
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+-.++.+=+.+||+||+.|....+...+ ...+.++++.+||.++.|.++.+||-|||+||||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls------- 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLS------- 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcC-------
Confidence 88888888889999999999765444322 2347889999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
.++++||||||++||+..+..+..++..-..+|+ .||.+||+.--+.
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GG----------iVllttHq~l~~~ 194 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGG----------IVLLTTHQPLPIA 194 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCC----------EEEEecCCccCCC
Confidence 6999999999999999999999999998777762 7999999976654
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-38 Score=330.51 Aligned_cols=219 Identities=36% Similarity=0.572 Sum_probs=192.5
Q ss_pred ceEEEEeEEEEeCC-----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC---CceEEEECCEeCCCCCCh
Q 018638 90 VLIDCRNVYKSFGE-----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 90 ~~l~~~nls~~y~~-----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p---~~G~I~i~G~~~~~~~~~ 161 (352)
..+.++|++....+ +++|+|||.++++||++||+|||||||||||++|+|.... .+|+|++||+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---- 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---- 99 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch----
Confidence 34788888887743 6799999999999999999999999999999999999975 68999999965321
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcccccCCC-----CCChHHHHH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGVEDRLPS-----ELSGGMKKR 234 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSGGqrQR 234 (352)
+ ..++..|||.|+..+++.+||+|++.|.....- ..+.++..++|+++++.+||....|..++ .+|||||+|
T Consensus 100 ~-~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR 178 (613)
T KOG0061|consen 100 R-SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR 178 (613)
T ss_pred h-hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence 1 123369999999999999999999999765432 23668888999999999999988888886 599999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRL 313 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv 313 (352)
|+||.-|++ +|.||+|||||+|||..+..++.+.|++++++| +|||++=|++. .+.++.|++
T Consensus 179 vsia~Ell~-------~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g----------rtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061|consen 179 VSIALELLT-------DPSILFLDEPTSGLDSFSALQVVQLLKRLARSG----------RTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred HHHHHHHHc-------CCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC----------CEEEEEEeCCcHHHHHHHhHh
Confidence 999999997 599999999999999999999999999999887 59999999995 778888999
Q ss_pred EEEeCCeEEEeeccccc
Q 018638 314 IFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~ 330 (352)
++|.+|+++..|++.+.
T Consensus 242 ~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 242 LLLSEGEVVYSGSPREL 258 (613)
T ss_pred hhhcCCcEEEecCHHHH
Confidence 99999999999988653
No 362
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-38 Score=350.61 Aligned_cols=221 Identities=28% Similarity=0.510 Sum_probs=189.5
Q ss_pred CCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 86 DDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 86 ~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
..+. |+++|++.+|.. ..||+||||+|++||.+||||..|||||||+.+|-++..|.+|+|.|||.|+.... -.+
T Consensus 1135 ~~G~--I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig-L~d 1211 (1381)
T KOG0054|consen 1135 SKGE--IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG-LHD 1211 (1381)
T ss_pred CCCe--EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc-HHH
Confidence 3444 999999999964 47999999999999999999999999999999999999999999999999988753 333
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMK 232 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqr 232 (352)
+ |.+++.+||+|.||.+ |||.|+.= . ...+ ++.+.++|++++|.+...+.| .++|-|||
T Consensus 1212 L-RsrlsIIPQdPvLFsG-TvR~NLDP-f---~e~s----D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1212 L-RSRLSIIPQDPVLFSG-TVRFNLDP-F---DEYS----DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred H-HhcCeeeCCCCceecC-ccccccCc-c---cccC----HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 3 3479999999999985 99999842 1 1122 344778889888876665554 58999999
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|-++|||||++ +++||+|||+||++|+++-..+++.|++--++ +|||.|.|+++++.+. ||
T Consensus 1282 QLlCLARALLr-------~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d-----------cTVltIAHRl~TVmd~-Dr 1342 (1381)
T KOG0054|consen 1282 QLLCLARALLR-------KSKILVLDEATASVDPETDALIQKTIREEFKD-----------CTVLTIAHRLNTVMDS-DR 1342 (1381)
T ss_pred HHHHHHHHHhc-------cCCEEEEecccccCChHHHHHHHHHHHHHhcC-----------CeEEEEeeccchhhhc-Ce
Confidence 99999999997 69999999999999999999999999986554 6999999999999985 99
Q ss_pred EEEEeCCeEEEeecccccccCCcHHH
Q 018638 313 LIFLYEGKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~~~~~~~~ 338 (352)
|+||++|+|++.|+|++++++.+...
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred EEEeeCCeEeecCChHHHHhCCcchH
Confidence 99999999999999999886654433
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.9e-37 Score=287.30 Aligned_cols=199 Identities=28% Similarity=0.343 Sum_probs=141.7
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH-HHHHcCCCCCceEEEECC-------EeCCCCCCh--hhhccceE
Q 018638 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL-KIIAGLLAPDKGEVYIRG-------RKRAGLISD--EEISGLRI 169 (352)
Q Consensus 100 ~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl-k~l~Gl~~p~~G~I~i~G-------~~~~~~~~~--~~~~~~~i 169 (352)
...+..+|++|||+|++||++||+||||||||||+ ..|. .+|++.+.. ......... ........
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 33456799999999999999999999999999995 4443 134432210 000000000 01111234
Q ss_pred EEEecCCC--CCCCCCHHH---HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhc
Q 018638 170 GLVFQSAA--LFDSLTVRE---NVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 170 g~v~Q~~~--l~~~lTV~e---ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++.+|++. +.+..+|.. ...+.... .......++ .++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLL---FARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHH---hhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 55555542 344445543 22221111 112222333 56899999986 5899999999999999999999997
Q ss_pred cCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE-----
Q 018638 244 DNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL----- 316 (352)
Q Consensus 244 ~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL----- 316 (352)
+| ++|||||||++||+..+..+.++|++++++| .|+|+||||++++ .+|||+++|
T Consensus 155 -------~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g----------~tii~itH~~~~~-~~~d~i~~l~~~~~ 216 (226)
T cd03270 155 -------GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG----------NTVLVVEHDEDTI-RAADHVIDIGPGAG 216 (226)
T ss_pred -------CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEEeCHHHH-HhCCEEEEeCCCcc
Confidence 46 6999999999999999999999999997766 5999999999987 589999999
Q ss_pred -eCCeEEEee
Q 018638 317 -YEGKIVWQG 325 (352)
Q Consensus 317 -~~G~iv~~g 325 (352)
++|+|+++|
T Consensus 217 ~~~G~iv~~g 226 (226)
T cd03270 217 VHGGEIVAQG 226 (226)
T ss_pred ccCCEEEecC
Confidence 999999876
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-37 Score=353.02 Aligned_cols=194 Identities=28% Similarity=0.442 Sum_probs=158.8
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 100 SFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 100 ~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
.++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. .+|+|++|++.+|
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------------~~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------------RSIAYVPQQAWIM 733 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------------CeEEEEeCCCccC
Confidence 3456679999999999999999999999999999999999999999999863 1599999999988
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHH-----HHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISE-----LVKENLAAV--GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+ .||+|||.|+.. .+.+...+ .+.+.++.+ |+....++++.+|||||||||+|||||+. +|
T Consensus 734 ~-~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~-------~p 801 (1560)
T PTZ00243 734 N-ATVRGNILFFDE----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA-------NR 801 (1560)
T ss_pred C-CcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc-------CC
Confidence 6 699999998531 11111111 122334444 66666778899999999999999999997 59
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
+++||||||++||+.....+++.+ .... +| +|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 802 ~illLDEP~saLD~~~~~~i~~~~~~~~~-~~----------~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 802 DVYLLDDPLSALDAHVGERVVEECFLGAL-AG----------KTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999988887643 3322 34 59999999999985 58999999999999999888765
Q ss_pred c
Q 018638 332 S 332 (352)
Q Consensus 332 ~ 332 (352)
.
T Consensus 870 ~ 870 (1560)
T PTZ00243 870 R 870 (1560)
T ss_pred h
Confidence 3
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=310.07 Aligned_cols=202 Identities=30% Similarity=0.485 Sum_probs=173.7
Q ss_pred CCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 87 DGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+..+++++|+++.|++ +.+++++||.|.+|+.+|||||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------ 384 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------ 384 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------
Confidence 45678999999999966 68999999999999999999999999999999999999999999987531
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhc
Q 018638 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 166 ~~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
.+|||..|+. .+++..|+.|++.-.. .... +..+...|.++++. +...+++..||||||-|+.||+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~---~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGF---PDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhC---cccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 1699999987 4567789999986532 1111 45688899999996 46688999999999999999999996
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|.+|||||||++||..+...+.+.|.++ +| |||+||||..++.++|++++.+.+ ++.+
T Consensus 457 -------~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~G-----------tvl~VSHDr~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 457 -------PPNLLLLDEPTNHLDIESLEALEEALLDF--EG-----------TVLLVSHDRYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred -------CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CC-----------eEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence 69999999999999999999999999876 34 899999999999999999999998 6655
Q ss_pred e-ecccc
Q 018638 324 Q-GMTHE 329 (352)
Q Consensus 324 ~-g~~~~ 329 (352)
. |...+
T Consensus 516 ~~g~y~~ 522 (530)
T COG0488 516 FEGGYED 522 (530)
T ss_pred cCCCHHH
Confidence 5 54333
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-35 Score=325.62 Aligned_cols=237 Identities=28% Similarity=0.419 Sum_probs=193.8
Q ss_pred hhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEEeCC---eeeeEeeeE
Q 018638 36 SFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKSFGE---KHILRGVSF 112 (352)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~y~~---~~~L~~vsl 112 (352)
+....+..+.+|+......+..+...... .+..+.+..++++|.+++.+. .+.|+||||
T Consensus 481 ~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 481 SQLVQAKVSLKRLKEFLLSEELDPDSVER------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcccccc------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 44556788899999999888654433311 122234456999999999864 348999999
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+|++|+.+||+||-|||||+||.+|.|-++..+|+|.++|. ++||+|.|.+++ .||+|||.|+.
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------------iaYv~Q~pWI~n-gTvreNILFG~ 606 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------------VAYVPQQPWIQN-GTVRENILFGS 606 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---------------EEEeccccHhhC-CcHHHhhhcCc
Confidence 99999999999999999999999999999999999999883 899999999997 59999999975
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
. .++ ++.++.++.+.|+..++-.| -+|||||||||+||||+.+ +++|+|||.|+
T Consensus 607 ~----~d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~-------~adIYLLDDpl 671 (1381)
T KOG0054|consen 607 P----YDE----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ-------DADIYLLDDPL 671 (1381)
T ss_pred c----ccH----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc-------cCCEEEEcCcc
Confidence 2 232 34667788888876655555 5999999999999999998 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccccc
Q 018638 262 AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 262 sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~~ 332 (352)
|++|....+.+++-.-...-++ +|+|+|||+++.+.. ||+|++|++|+|++.|+.+|+.+
T Consensus 672 SAVDahvg~~if~~ci~~~L~~----------KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRG----------KTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcC----------CEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence 9999999888875443322223 599999999998776 69999999999999998888764
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=264.98 Aligned_cols=210 Identities=31% Similarity=0.450 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEe-----CC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe----CCCC
Q 018638 90 VLIDCRNVYKSF-----GE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK----RAGL 158 (352)
Q Consensus 90 ~~l~~~nls~~y-----~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~----~~~~ 158 (352)
..|.++||+|+| ++ -++|++|||+++.||++++=||||||||||||+|.|-+.||+|+|++..+. +...
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 358999999999 33 369999999999999999999999999999999999999999999996542 1111
Q ss_pred CChh---hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHH
Q 018638 159 ISDE---EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKR 234 (352)
Q Consensus 159 ~~~~---~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQR 234 (352)
.+. ..++.-||||.|--...|..+..|.++.++.. .+.+.+....++.++|.++++.+. ..-.|.++|||||||
T Consensus 83 -~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 83 -EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred -ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 111 22334599999988778888888988888754 346777788889999999999754 455689999999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
|.|||.++. +-+||||||||++||..++..+.++|.+-+..| +.+|=|-||-+.=..+|||++
T Consensus 161 VNIaRgfiv-------d~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G----------aAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 161 VNIARGFIV-------DYPILLLDEPTASLDATNRAVVVELIREAKARG----------AALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred hhhhhhhhc-------cCceEEecCCcccccccchHHHHHHHHHHHhcC----------ceEEEeeccHHHHHHHhhhee
Confidence 999999997 589999999999999999999999999988887 689999999999899999998
Q ss_pred EEeC
Q 018638 315 FLYE 318 (352)
Q Consensus 315 vL~~ 318 (352)
-|..
T Consensus 224 ~~~~ 227 (235)
T COG4778 224 DVSA 227 (235)
T ss_pred eccc
Confidence 7753
No 368
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.9e-37 Score=269.23 Aligned_cols=228 Identities=25% Similarity=0.379 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+++++||..+- -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.++|.++..+. ..+..+ +-
T Consensus 2 ~l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~-~~eLAr-hR 74 (248)
T COG4138 2 ILMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWS-ATELAR-HR 74 (248)
T ss_pred ceeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHh-HhHHHH-HH
Confidence 368889887642 377899999999999999999999999999999976 67899999999876542 333333 45
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+.|+......|.|+.++.+. .+.++....+.++...++|++.+.|..++|||||.|||-+|-..++-+++..
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLH------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhc------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 7998876544458999998763 2345556678889999999999999999999999999999999988777666
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
...++||+|||.++||...+..+..+|.++.++| .+|||++||++.-.+.||++++++.|++...|..+|
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G----------~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~e 218 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG----------LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREE 218 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhCC----------cEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhh
Confidence 6678999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
++++ +.+.+.+
T Consensus 219 Vlt~--~vL~q~f 229 (248)
T COG4138 219 VLTP--PVLAQAY 229 (248)
T ss_pred hcCh--HHHHHHh
Confidence 8754 4444444
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-34 Score=274.70 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=155.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-----c-CC----CCCce-----------EEEECCEeCCCCCCh-
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-----G-LL----APDKG-----------EVYIRGRKRAGLISD- 161 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-----G-l~----~p~~G-----------~I~i~G~~~~~~~~~- 161 (352)
..-|+|||++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.++..++......
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999999662 1 11 12211 356665544321110
Q ss_pred -h-------hhc----------c-----ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc
Q 018638 162 -E-------EIS----------G-----LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG 218 (352)
Q Consensus 162 -~-------~~~----------~-----~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~ 218 (352)
. ..+ + ..+.|..++...+..+||.|++.|.... . . .+++.++|+.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~----~--~-~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI----P--K-IARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh----h--h-HHHHHHHHHHcCCch
Confidence 0 000 0 1256666666666789999999885421 1 1 234678999999987
Q ss_pred -ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEE
Q 018638 219 -VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYV 297 (352)
Q Consensus 219 -~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvI 297 (352)
.+++++.+||||||||++|||+|+.+ ..+|+++||||||+|||+..+..+.++|+++.++| .|||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~----~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g----------~tvI 226 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKR----STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG----------NTVV 226 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcC----CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEE
Confidence 58999999999999999999999963 11379999999999999999999999999998776 5999
Q ss_pred EEcCCHHHHHhhcCEEEEE------eCCeEEEeecc
Q 018638 298 VVTHQHSTIRRAVDRLIFL------YEGKIVWQGMT 327 (352)
Q Consensus 298 ivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~ 327 (352)
+|||+++.+. .||++++| ++|+|+++|++
T Consensus 227 iitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999986 69999999 89999999863
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.9e-35 Score=251.02 Aligned_cols=133 Identities=50% Similarity=0.774 Sum_probs=115.3
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++... .....+..++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI--DIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS--HHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999999999999998652 22223346999999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC----CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP----SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~----~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
| ...+++.++++.+++.+..++.+ .+||+||||||+|||||++ +|++|||||||+
T Consensus 79 ~--------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-------~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N--------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-------NPKLLLLDEPTN 137 (137)
T ss_dssp H--------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-------TSSEEEEESTTT
T ss_pred c--------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc-------CCCEEEEeCCCC
Confidence 9 12344778888888866555555 9999999999999999997 699999999997
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=286.55 Aligned_cols=222 Identities=26% Similarity=0.411 Sum_probs=191.3
Q ss_pred CCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 87 DGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+.+.++++|++..- .++||||++++||++||.|-=|||+|-|+++|.|..++++|+|+++|+++... ++.+..+
T Consensus 259 ~~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~-sp~~Ai~ 333 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR-SPRDAIK 333 (500)
T ss_pred CCCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCC-CHHHHHH
Confidence 356789999988532 58999999999999999999999999999999999999999999999987643 3444445
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHhh-hhhcC---CCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHH
Q 018638 167 LRIGLVFQSA---ALFDSLTVRENVGFL-LYENS---KMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALA 238 (352)
Q Consensus 167 ~~ig~v~Q~~---~l~~~lTV~eni~~~-~~~~~---~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIA 238 (352)
..|+|||.|- .++..++|.+|+.++ +.... -.+.....+.++++.+.+++. .-.+..+.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 5799999874 688899999999887 22211 245556667788899999995 466789999999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|.|.. +|++|||||||.|+|.-++.+++++|++|+++| .+|||+|-++.++..+||||+||++
T Consensus 414 rwL~~-------~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G----------~ail~iSSElpEll~~~DRIlVm~~ 476 (500)
T COG1129 414 RWLAT-------DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG----------KAILMISSELPELLGLSDRILVMRE 476 (500)
T ss_pred HHHhc-------CCCEEEECCCCcCcccchHHHHHHHHHHHHHCC----------CEEEEEeCChHHHHhhCCEEEEEEC
Confidence 99986 699999999999999999999999999999998 5999999999999999999999999
Q ss_pred CeEEEeeccccc
Q 018638 319 GKIVWQGMTHEF 330 (352)
Q Consensus 319 G~iv~~g~~~~~ 330 (352)
|+|+.+-+.+++
T Consensus 477 Gri~~e~~~~~~ 488 (500)
T COG1129 477 GRIVGELDREEA 488 (500)
T ss_pred CEEEEEeccccC
Confidence 999987755553
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=4.1e-34 Score=260.04 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=133.6
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---------eEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---------GEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---------G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
++++|++++| +++|+||||||||||+++|+|+++|.. |++.++|++... . ....+|+|+||++..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~v~~vfq~~~~ 87 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---P--ANFAEVTLTFDNSDG 87 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---C--CceEEEEEEEEcCCC
Confidence 6889999999 999999999999999999999987653 467777765432 1 112469999999976
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD 258 (352)
+ |+. .. .+++.++++. .+..++.+.+||||||||++|||+|+.. ...+|+++|||
T Consensus 88 ~----------~~~-----~~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~---~~~~~~illlD 142 (197)
T cd03278 88 R----------YSI-----IS----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIF---RVRPSPFCVLD 142 (197)
T ss_pred c----------eeE-----Ee----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHh---ccCCCCEEEEe
Confidence 6 211 01 2345666766 5567889999999999999999999620 00147999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++||+..+..+.+.|+++++ + .|||+|||+++.+ ++||+++.|..
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~-~----------~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSK-E----------TQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhcc-C----------CEEEEEECCHHHH-hhcceEEEEEe
Confidence 99999999999999999999865 3 4899999999987 57999999864
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=5.7e-34 Score=267.48 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=149.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCE-eCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGR-KRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~-~~~~~~~~~~~~~~~i 169 (352)
|+++|. ++|.+..++.+ +. ..+++||||||||||||+++|++++.|+ .|++++.|. ++............+|
T Consensus 6 ~~~~~f-~~~~~~~~~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISG----FD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 667775 66755433322 22 5599999999999999999999999987 468888776 3221111111123369
Q ss_pred EEEecCC---------CCCCCCCHHHHHHhhhhhcCCC-CHHHHHHHHHHHHHHcCCC--------------------cc
Q 018638 170 GLVFQSA---------ALFDSLTVRENVGFLLYENSKM-RDEQISELVKENLAAVGLK--------------------GV 219 (352)
Q Consensus 170 g~v~Q~~---------~l~~~lTV~eni~~~~~~~~~~-~~~~~~~~v~~~l~~~gL~--------------------~~ 219 (352)
+++||++ .+.+.+||.+|+.++....... ......+++.++|+.+|+. +.
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 3456789998886643211101 1223346788999999986 45
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
.++++.+||||||||++|||||+.- -..+|+++|+||||++||+..+..+.+.|+++.+ | .|+|+|
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~---~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g----------~~ii~i 225 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALL---LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-G----------SQFIVV 225 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHh---hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-C----------CEEEEE
Confidence 5788999999999999999999720 0015899999999999999999999999999853 4 489999
Q ss_pred cCCHHHHHhhcCEEEEEe
Q 018638 300 THQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~ 317 (352)
||+. ++.+.||+++-+.
T Consensus 226 SH~~-~~~~~~d~v~~~~ 242 (251)
T cd03273 226 SLKE-GMFNNANVLFRTR 242 (251)
T ss_pred ECCH-HHHHhCCEEEEEE
Confidence 9995 4555799998775
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.6e-33 Score=260.70 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=143.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH----------------cCCCCCce--------E
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------GLLAPDKG--------E 147 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----------------Gl~~p~~G--------~ 147 (352)
|+++| -|+|++..++++++ |++++|+||||||||||+++|+ +++.+++| +
T Consensus 4 i~~~n-fksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQG-FKSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeC-ccCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 56666 35788888888887 8899999999999999999998 55566666 6
Q ss_pred EEECCEeCC-CCCChhhhccceEEEEecCCCCCC-CCCHHHHHHhhhhhcCCCCHHH-----HHHHHHHHHHHcCCCccc
Q 018638 148 VYIRGRKRA-GLISDEEISGLRIGLVFQSAALFD-SLTVRENVGFLLYENSKMRDEQ-----ISELVKENLAAVGLKGVE 220 (352)
Q Consensus 148 I~i~G~~~~-~~~~~~~~~~~~ig~v~Q~~~l~~-~lTV~eni~~~~~~~~~~~~~~-----~~~~v~~~l~~~gL~~~~ 220 (352)
|.+++.+.. .........++++++++|++.+++ ..|..|...+.. .. +..... .+. +..+.+++.+..
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~-~~-gl~~~~~~~~~~qg---~i~~l~~l~~~~ 152 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLE-SA-GFSRSNPYYIVPQG---KINSLTNMKQDE 152 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHH-Hc-CCCCCCCcEEEEcC---chHHhhhccccc
Confidence 676653211 001111112335999999988877 357766544432 22 221110 011 233345566667
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
++++.+||||||||++|||||+... ..+|+++|+||||++||+.++..+++.|+++++ + +++|++|
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~---~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~----------~~ii~~~ 218 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQK---CDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-G----------AQFITTT 218 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhc---cCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEe
Confidence 8899999999999999999996200 014899999999999999999999999999865 4 4888888
Q ss_pred CCHHHHHhhcCEEEEEe
Q 018638 301 HQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~ 317 (352)
|+.+ +.++||++++|.
T Consensus 219 h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPE-LLEVADKFYGVK 234 (243)
T ss_pred cCHH-HHhhCCEEEEEE
Confidence 8865 668999999985
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=1.2e-32 Score=252.68 Aligned_cols=201 Identities=22% Similarity=0.249 Sum_probs=143.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEe-CCcEEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIR-HGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~-~Ge~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++|.. +|.+. .+|+|+.. +|++++|+||||||||||+++|++ |+-+..+....+. ... ..... .....
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~-~~~~~-~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRS-VFAPG-EDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHH-HhcCC-CccEE
Confidence 48899988 76554 56777654 589999999999999999999996 4444444444321 000 00111 11225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC--
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT-- 246 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~-- 246 (352)
|+++||+.... .++..+. +.+.++..+.+ .++..++.++.++++.+||||||||++|||||+..+.
T Consensus 78 v~~~f~~~~~~--~~~~r~~--------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~ 145 (213)
T cd03279 78 VSFTFQLGGKK--YRVERSR--------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQ 145 (213)
T ss_pred EEEEEEECCeE--EEEEEec--------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhh
Confidence 99999987321 1221111 23333322211 3455567788899999999999999999999974100
Q ss_pred -CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 247 -KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 247 -~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
....+|+++||||||++||+..+..+.+.|.++++++ .|+|+|||+++.+..+||+++++++|.
T Consensus 146 ~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~----------~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 146 NRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN----------RMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred hccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEECchHHHHhhCcEEEEEecCC
Confidence 0002589999999999999999999999999997765 599999999999999999999999985
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.98 E-value=6.8e-34 Score=261.47 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=145.0
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|+++|.. +|+++.++++++| ++++|+||||||||||+++|. +++|.+.. .....++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~------~~~~~~i~~ 63 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS------KMRQKKLSD 63 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH------HhhhhhHHH
Confidence 7888876 8999999999988 899999999999999999997 33454321 111235899
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhc-------CCCCHHHHHH--HHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 172 VFQSAALFDSLTVRENVGFLLYEN-------SKMRDEQISE--LVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~-------~~~~~~~~~~--~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
++|+..+++.+|+.+++.+..... .+...+.... ...++++.+++.+..++++..||+|||||++||||++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 64 LIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred HhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 999988888889988776543211 1111111000 0145667888888888999999999999999999996
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
... ..+|++++|||||+|||+.++..+.+.|++++++ .|+|++||+. ++.++|||+++|..
T Consensus 144 ~~~---~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~-----------~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 144 LHH---YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN-----------AQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred hcc---cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-----------CEEEEEECcH-HHHHhCCEEEEEEe
Confidence 300 0147999999999999999999999999998644 3899999995 56789999999974
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=3.1e-30 Score=256.83 Aligned_cols=229 Identities=26% Similarity=0.442 Sum_probs=198.9
Q ss_pred CCCCCcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC-CCCCCh
Q 018638 84 PEDDGDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR-AGLISD 161 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~-~~~~~~ 161 (352)
+..++++.|+++||+..-.. ...+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ... +.
T Consensus 250 ~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~-~~ 328 (501)
T COG3845 250 PSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL-SP 328 (501)
T ss_pred CCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC-CH
Confidence 34456789999999987643 5789999999999999999999999999999999999999999999999996 332 34
Q ss_pred hhhccceEEEEecCC---CCCCCCCHHHHHHhhhhhc------CCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHH
Q 018638 162 EEISGLRIGLVFQSA---ALFDSLTVRENVGFLLYEN------SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGM 231 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~---~l~~~lTV~eni~~~~~~~------~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGq 231 (352)
..+.+..++|||.|. .+.+.+|+.||+.+..+.. .-.+..++.+.+.++++.+++. .-...+..+||||+
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 444555799999985 5778899999998865421 1246678888899999999996 45566789999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
+||+-+||=|.. +|++||+.+||-|||..+.+.+.+.|.+.+++| +.|+++|-|++++..+||
T Consensus 409 qQK~IlaREl~~-------~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G----------~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 409 QQKLILARELAR-------RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG----------KAVLLISEDLDEILELSD 471 (501)
T ss_pred eehhhhhhhhcc-------CCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC----------CEEEEEehhHHHHHHhhh
Confidence 999999999986 699999999999999999999999999999988 589999999999999999
Q ss_pred EEEEEeCCeEEEeeccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~ 330 (352)
||.||.+|+|+...++++.
T Consensus 472 rIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 472 RIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred eeeeeeCCceecccccccC
Confidence 9999999999998877764
No 378
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.5e-31 Score=240.49 Aligned_cols=239 Identities=24% Similarity=0.353 Sum_probs=189.9
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC----CceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP----DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p----~~G~I~i~G~~~~~~~~~~ 162 (352)
++.++|++..+ |..+++++||+++.+||+-|+||.||||||-..|.|+|..+- +.-...|++.++..+...+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 47788888887 346799999999999999999999999999999999998763 3456677877776654332
Q ss_pred hh--ccceEEEEecCCC--CCCCCCHHHHHHhh--hhhcCCCCH---HHHHHHHHHHHHHcCCCc---ccccCCCCCChH
Q 018638 163 EI--SGLRIGLVFQSAA--LFDSLTVRENVGFL--LYENSKMRD---EQISELVKENLAAVGLKG---VEDRLPSELSGG 230 (352)
Q Consensus 163 ~~--~~~~ig~v~Q~~~--l~~~lTV~eni~~~--~~~~~~~~~---~~~~~~v~~~l~~~gL~~---~~~~~~~~LSGG 230 (352)
++ ....|+++||+|. |-|.-+|...+.-. .+.+.+... .-.++++-++|.++|+.+ ....+|.+|--|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 21 1235999999984 56665665443221 111111100 011345678999999964 566899999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
|-|+|.||.|++. +|++||.||||+++|+.++.+++.+|.++.+... +||++++||+..+.+.|
T Consensus 163 E~QKVMIA~A~An-------qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~---------TtILL~s~Dl~~is~W~ 226 (330)
T COG4170 163 ECQKVMIAIALAN-------QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN---------TTILLISHDLQMISQWA 226 (330)
T ss_pred cceeeeeehhhcc-------CCceEeccCCCcccCccHHHHHHHHHHHhhccCC---------ceEEEEcccHHHHHHHh
Confidence 9999999999985 7999999999999999999999999999987642 69999999999999999
Q ss_pred CEEEEEeCCeEEEeecccccc-cCCcHHHHHHhcCC
Q 018638 311 DRLIFLYEGKIVWQGMTHEFT-SSSNPIVQQFASGS 345 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~ 345 (352)
|+|-||..|+-++.++++++. .+.|||++.++...
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred hheEEEEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 999999999999999888865 57789999998763
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=2.1e-30 Score=280.45 Aligned_cols=138 Identities=27% Similarity=0.368 Sum_probs=116.4
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC---cEEEE
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP---EVLLY 257 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p---~llLL 257 (352)
+||.|++.|.... . .+. ...+.|+.+||.. .+++.+.+||||||||++|||+|+. +| +++||
T Consensus 792 ltv~E~l~~f~~~----~--~i~-~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~-------~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAI----P--KIA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK-------RSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhc----h--hhh-HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc-------CCCCCeEEEE
Confidence 6888888774321 1 122 2457899999986 5799999999999999999999997 47 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccc
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFT 331 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~ 331 (352)
||||+|||+..+..++++|+++.++| .|||+|||+++.+. .||+|++| ++|+|++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G----------~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKG----------NTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999998776 59999999999985 69999999 799999999999987
Q ss_pred cCCcHHHHHHhcC
Q 018638 332 SSSNPIVQQFASG 344 (352)
Q Consensus 332 ~~~~~~~~~~~~~ 344 (352)
......+.+++..
T Consensus 927 ~~~~s~t~~~l~~ 939 (943)
T PRK00349 927 KVEASYTGRYLKP 939 (943)
T ss_pred hCcccHHHHHHHH
Confidence 6555667777754
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=8.7e-30 Score=286.63 Aligned_cols=222 Identities=22% Similarity=0.350 Sum_probs=164.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHH---------HHHcCCCCCc----eE----EEECC
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILK---------IIAGLLAPDK----GE----VYIRG 152 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk---------~l~Gl~~p~~----G~----I~i~G 152 (352)
..|+++|++. ..|+++||+|++||+++|+|+||||||||++ .|.|...+-. +. |.++-
T Consensus 599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 3689998873 3799999999999999999999999999999 6666543311 11 22222
Q ss_pred EeCCCCCC--h-h------hhc---------c---c-eEEEEecC------------------C----------------
Q 018638 153 RKRAGLIS--D-E------EIS---------G---L-RIGLVFQS------------------A---------------- 176 (352)
Q Consensus 153 ~~~~~~~~--~-~------~~~---------~---~-~ig~v~Q~------------------~---------------- 176 (352)
.++..... . . ..+ + . ...|.|+. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 11110000 0 0 000 0 0 12223331 0
Q ss_pred ----CCCCCCCHHHHHHhhhhhcC--CCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 177 ----ALFDSLTVRENVGFLLYENS--KMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 177 ----~l~~~lTV~eni~~~~~~~~--~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
..|...||.|++.+...... ....+++.+++ ++|+.+||.+. +++.+.+|||||||||+|||||+.. +
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~----~ 828 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAP----S 828 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhc----C
Confidence 24667899999988764321 12344566666 58999999886 7999999999999999999999730 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe------CCeEEE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY------EGKIVW 323 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~------~G~iv~ 323 (352)
.+|++|||||||+|||+..+..++++|++++++| .|||+|||+++.+ .+||++++|. +|++++
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G----------~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG----------HTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEE
Confidence 2699999999999999999999999999998776 5999999999999 7899999996 799999
Q ss_pred eeccccccc
Q 018638 324 QGMTHEFTS 332 (352)
Q Consensus 324 ~g~~~~~~~ 332 (352)
.|+++++..
T Consensus 898 ~Gtpeel~~ 906 (1809)
T PRK00635 898 SCSPEELIH 906 (1809)
T ss_pred eCCHHHHHh
Confidence 999988754
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.7e-31 Score=254.45 Aligned_cols=248 Identities=24% Similarity=0.310 Sum_probs=186.9
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEE
Q 018638 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (352)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~ 99 (352)
-+|+..+...- -....++.+.+++.+.--.|+......+.. .|+ -..|+++||.+
T Consensus 276 r~pL~s~vgil-----P~l~~AqvA~~kiakle~~~~~a~~~~~q~------------------~p~--~~~lelrnvrf 330 (546)
T COG4615 276 RTPLLSAVGIL-----PTLLTAQVAFNKIAKLELAPYKADFPRPQA------------------FPD--WKTLELRNVRF 330 (546)
T ss_pred hhHHHHHHhhh-----hHHHHHHHHHHHHHHhhcCCccccCCCCCc------------------CCc--ccceeeeeeee
Confidence 44554443333 367788889999998887775433322111 111 12499999999
Q ss_pred EeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 100 SFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 100 ~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
.|... .-+..||++|++||++.|+|.||||||||++++.||++|++|+|++||+++.... .++. |.-++-||-|.+|
T Consensus 331 ay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~-ledY-R~LfSavFsDyhL 408 (546)
T COG4615 331 AYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQ-LEDY-RKLFSAVFSDYHL 408 (546)
T ss_pred ccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCC-HHHH-HHHHHHHhhhHhh
Confidence 99764 5689999999999999999999999999999999999999999999999886532 2222 2237889999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc---ccccC--CCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG---VEDRL--PSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~---~~~~~--~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|+.+--.|+- .+ .+.++.+|+++.+.+ ..+.. +-.||-|||+|+|+--||+. +.+
T Consensus 409 F~~ll~~e~~---------as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE-------eR~ 468 (546)
T COG4615 409 FDQLLGPEGK---------AS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE-------ERD 468 (546)
T ss_pred hHhhhCCccC---------CC----hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh-------hCC
Confidence 8853111110 12 233566677666643 33333 46899999999999999996 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIR-SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~-~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|+++||=-+--||.-++.+.+.+- .++++| +||+.||||-.-. .+|||++.|++|++++..
T Consensus 469 Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG----------KTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 469 ILVLDEWAADQDPAFRREFYQVLLPLLKEQG----------KTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEeehhhccCChHHHHHHHHHHhHHHHHhC----------CeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999999999999999986554 456777 5999999997765 467999999999998875
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=1.4e-30 Score=237.94 Aligned_cols=166 Identities=24% Similarity=0.311 Sum_probs=129.1
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHH----cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC-----CCCC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIA----GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-----ALFD 180 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~-----~l~~ 180 (352)
.++++.+| +++|+||||||||||+++|. |...|++|.+..+.+.+.. . ..+..|+++||++ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~--~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---G--EVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---C--CCcEEEEEEEEeCCCCEEEEEE
Confidence 34566677 99999999999999999995 9999988877622221111 1 1223699999987 3445
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH------HHHHHHHhccCCCCCCCCcE
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR------VALARSIIFDNTKESVEPEV 254 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR------vaIArAL~~~~~~~a~~p~l 254 (352)
.+|+++|+.+. ...+ +.+.+ ++.+.+||+||+|| ++||||++. +|++
T Consensus 90 ~~~~~~~~~~~-------~~~~----~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~-------~p~i 142 (204)
T cd03240 90 SLAILENVIFC-------HQGE----SNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGS-------NCGI 142 (204)
T ss_pred EhhHhhceeee-------chHH----HHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhcc-------CCCE
Confidence 56899998663 1121 22222 77899999999996 789999986 6999
Q ss_pred EEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 255 LLYDEPTAGLDPIAST-VVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 255 lLLDEPtsgLD~~~~~-~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|+||||++||+..+. .+.++|++++++ + .|||++||+++.+. .||++++|++.
T Consensus 143 lllDEP~~~LD~~~~~~~l~~~l~~~~~~~~----------~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 143 LALDEPTTNLDEENIEESLAEIIEERKSQKN----------FQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhccC----------CEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 9999999999999999 999999999775 4 59999999999875 68999999643
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1e-30 Score=261.79 Aligned_cols=203 Identities=28% Similarity=0.388 Sum_probs=166.7
Q ss_pred CcceEEEEeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+.|.|.+.||+|.|.+. .++++++|-|..++.+++|||||||||||||+++|.+.|..|.|.-.-..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------ 453 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------ 453 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------
Confidence 45789999999999765 58899999999999999999999999999999999999999998654321
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhc
Q 018638 167 LRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 167 ~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++++.-|+. .+--+.++.|++.-.+ .. ....+.+..++.++||. +....+.++||+|||.||.+|+.+++
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF---PD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc---cc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc
Confidence 355555653 2322467777764321 11 22245578899999998 56678889999999999999999997
Q ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE-E
Q 018638 244 DNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI-V 322 (352)
Q Consensus 244 ~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i-v 322 (352)
+|.+|||||||+|||..+...+.+.|.++ .| +||+||||...+..++++|++..+|.+ .
T Consensus 527 -------qP~lLlLDEPtnhLDi~tid~laeaiNe~--~G-----------gvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 527 -------QPHLLLLDEPTNHLDIETIDALAEAINEF--PG-----------GVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred -------CCcEEEecCCCcCCCchhHHHHHHHHhcc--CC-----------ceeeeechhhHHHHHHHHhHhhccCceee
Confidence 69999999999999999999999999875 33 799999999999999999999999876 4
Q ss_pred Eeecccc
Q 018638 323 WQGMTHE 329 (352)
Q Consensus 323 ~~g~~~~ 329 (352)
+.|+...
T Consensus 587 ~~G~i~~ 593 (614)
T KOG0927|consen 587 WDGDIEI 593 (614)
T ss_pred cCccHHH
Confidence 5565443
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=9.9e-30 Score=275.31 Aligned_cols=217 Identities=30% Similarity=0.442 Sum_probs=184.5
Q ss_pred eEEEEeEEEEe----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
+...+|+.+.- +.+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|+++|.+..+ ...
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q----~tF 862 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ----ETF 862 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch----hhh
Confidence 45556666554 45789999999999999999999999999999999999754 257999999987531 222
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcccccCCCC----CChHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGVEDRLPSE----LSGGMKKRVALA 238 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~----LSGGqrQRvaIA 238 (352)
++.+|||-|+....+.+||+|-+.|.+..+ ...+.++..+.|+++++.++|+++.+..++. ||..||+|+.||
T Consensus 863 -~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 863 -ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred -ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence 336999999988789999999999987644 2345666678899999999999999888876 999999999999
Q ss_pred HHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-HHHhhcCEEEEE
Q 018638 239 RSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-TIRRAVDRLIFL 316 (352)
Q Consensus 239 rAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-~i~~~aDrv~vL 316 (352)
--|+. +| .||+|||||||||..+...+++.+++++..| .|||.+=|+++ .+.+..|++++|
T Consensus 942 VELvA-------~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tG----------qtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 942 VELVA-------NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTG----------QTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred EEEec-------CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcC----------CeEEEEecCCcHHHHHHHhHHHHH
Confidence 99986 69 8999999999999999999999999999988 49999999996 566677999999
Q ss_pred e-CCeEEEeecccc
Q 018638 317 Y-EGKIVWQGMTHE 329 (352)
Q Consensus 317 ~-~G~iv~~g~~~~ 329 (352)
+ .|+.+..|+..+
T Consensus 1005 krGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1005 KRGGQTVYFGPLGE 1018 (1391)
T ss_pred hcCCeEEEecCccc
Confidence 7 568999997644
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=4.6e-29 Score=256.37 Aligned_cols=190 Identities=27% Similarity=0.377 Sum_probs=156.8
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+..|+++||+..-++ +..|++.||+|++||.+-|.||||||||||+|+|+||+|.-+|+|.+-. ..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-------------~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-------------DS 456 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-------------CC
Confidence 467999999999865 6789999999999999999999999999999999999999999887531 11
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC------CCCChHHHHHHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP------SELSGGMKKRVALARSI 241 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSGGqrQRvaIArAL 241 (352)
.+-|+||.|++.. .|.+|-|.++..... .++ +.+.++|.++||.++.++.- ..||+|||||+++||.|
T Consensus 457 ~~lflpQ~PY~p~-GtLre~l~YP~~~~~-~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQ-GTLREALCYPNAAPD-FSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCC-ccHHHHHhCCCCCCC-CCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 4789999999765 599999998753321 333 34778899999987665532 68999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
++ +|++++|||.|++||+.++..+++++++--. + +|||-|+|+.....-. ++.+-+
T Consensus 531 L~-------kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~----------~tvISV~Hr~tl~~~h-~~~l~l 586 (604)
T COG4178 531 LH-------KPKWVFLDEATSALDEETEDRLYQLLKEELP-D----------ATVISVGHRPTLWNFH-SRQLEL 586 (604)
T ss_pred Hc-------CCCEEEEecchhccChHHHHHHHHHHHhhCC-C----------CEEEEeccchhhHHHH-hhheee
Confidence 97 6999999999999999999999999976322 2 6999999997765544 554444
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=242.76 Aligned_cols=191 Identities=30% Similarity=0.449 Sum_probs=154.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+.+++..+++|.||+. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|+ ..+ .+
T Consensus 340 ~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~------------~~ 402 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED------------LK 402 (591)
T ss_pred ceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc------------ce
Confidence 4567777888888754 344445567788999999999999999999999999999998 211 15
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|+|=||--.--...||.+.+.-..... ..... .-.++++-++|++.+++++.+|||||.||||||.||.+
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~r----- 472 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSA--FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR----- 472 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhh--cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcc-----
Confidence 889999643333579999875533211 11111 13467888999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+++++|||||+|.||.+.+..+-+.|+++..+.+ +|.++|.||+-.+.-++||++|++
T Consensus 473 --eADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~---------kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 473 --EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE---------KTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred --ccCEEEecCchhhccHHHHHHHHHHHHHHHhhcC---------ceEEEEecceehhhhhhceEEEEe
Confidence 6999999999999999999999999999987643 699999999999999999999885
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=245.07 Aligned_cols=212 Identities=26% Similarity=0.434 Sum_probs=155.8
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC--CEeCCCCCChhhhccceE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR--GRKRAGLISDEEISGLRI 169 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~--G~~~~~~~~~~~~~~~~i 169 (352)
+.+.|++++|.++.+++|++|++.+|+.+||+|+|||||||+|++|+|-..|..-.+-+. .+++.. +... -+
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p--s~~~----av 149 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP--SEKQ----AV 149 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC--chHH----HH
Confidence 999999999999999999999999999999999999999999999999999866554432 222110 1100 01
Q ss_pred EEEec--------------CCCCC-CC--CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHH
Q 018638 170 GLVFQ--------------SAALF-DS--LTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGM 231 (352)
Q Consensus 170 g~v~Q--------------~~~l~-~~--lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGq 231 (352)
-++++ +.... +. .--.+++.. +....+.+..+.++.++|.-+|. .+..++...+||||+
T Consensus 150 ~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~---r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 150 QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYE---RLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHH---HHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 11111 00000 00 000011110 01113344455556667776765 468889999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|.|++|||||.. +|++|||||||++||+.+..-+.+.|.+..+ .++|+++|+.+++-.+|.
T Consensus 227 rmR~aLAr~Lf~-------kP~LLLLDEPtnhLDleA~~wLee~L~k~d~------------~~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 227 RMRAALARALFQ-------KPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR------------IILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHHHHHhc-------CCCEEEecCCccCCCHHHHHHHHHHHHhccC------------ceEEEEecchhhhhhHhh
Confidence 999999999996 6999999999999999999999988876532 279999999999999999
Q ss_pred EEEEEeCCe-EEEeecccccc
Q 018638 312 RLIFLYEGK-IVWQGMTHEFT 331 (352)
Q Consensus 312 rv~vL~~G~-iv~~g~~~~~~ 331 (352)
.|+.|++++ +.+.|+-+++.
T Consensus 288 ~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 288 NIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhheecccceeeecCCHHHHh
Confidence 999999999 67777666553
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=4.9e-28 Score=220.34 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=129.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
.++++++++.+| +.+|+||||||||||+.+|...+..+.. ....|.....+.... .....|.+.||+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~-~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG-ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC-CCeEEEEEEEEcCCccC-----
Confidence 357788888887 8899999999999999999855433321 111232111110000 01225899999887665
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
| . ... ..++.+.++++. .+..++++.+||+|||||++||+|++. ..+.+|+++||||||++||
T Consensus 83 -~---~------~~~-~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~---~~~~~p~illlDEP~~glD 145 (198)
T cd03276 83 -N---P------LCV-LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSL---WEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred -C---c------CCH-HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHH---hcccCCCEEEecCcccccC
Confidence 1 0 111 112446667766 667788999999999999999999941 0002699999999999999
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 266 PIASTVVEDLIRSVHKK--GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~--g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+..+..+.+.|.++.++ +. .|||++||+++.+..+ |+|.+|..++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~---------~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGR---------QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCc---------EEEEEECCcccccccc-cceeEEEecC
Confidence 99999999999998653 21 5899999999999987 9999998754
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.5e-27 Score=256.20 Aligned_cols=127 Identities=29% Similarity=0.379 Sum_probs=104.4
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
+||.|.+.|.... . .+. ...++|+.+||.. .+++++.+|||||+||++||++|+.+ ..+|+++|||||
T Consensus 790 ~tv~e~~~f~~~~----~--~i~-~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~----~~~p~llILDEP 858 (924)
T TIGR00630 790 MTVEEAYEFFEAV----P--SIS-RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR----STGRTLYILDEP 858 (924)
T ss_pred CcHHHHHHHHHhc----c--chh-HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhc----CCCCCEEEEECC
Confidence 5666666663211 1 111 2457899999976 57999999999999999999999852 124899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeeccccc
Q 018638 261 TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEF 330 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~ 330 (352)
|+|||+..+..++++|+++.++| .|||+|||+++.+. .||+|++| ++|+|++.|+++++
T Consensus 859 tsgLD~~~~~~L~~~L~~l~~~G----------~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 859 TTGLHFDDIKKLLEVLQRLVDQG----------NTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999998776 59999999999985 69999999 79999999987664
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.9e-28 Score=229.81 Aligned_cols=202 Identities=19% Similarity=0.227 Sum_probs=131.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe-CCCCCCh--hhhccce
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISD--EEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~-~~~~~~~--~~~~~~~ 168 (352)
|+++|. ++|.+...+ .+.++ +++|+||||||||||+.+|++++.++.|++...+.+ +...... .......
T Consensus 4 i~l~nf-~~~~~~~~~-----~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHVI-----GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCeee-----cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 778886 667543333 33344 999999999999999999999999888887654421 1000000 0000113
Q ss_pred EEEEe--cCCCC-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--------------ccc--------cC
Q 018638 169 IGLVF--QSAAL-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--------------VED--------RL 223 (352)
Q Consensus 169 ig~v~--Q~~~l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--------------~~~--------~~ 223 (352)
|..+| |++.. +-..++.+.... + ...+. ....+.+.++++.+|+.. ..+ ++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~-~-~ingk--~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSS-Y-RINGK--VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceE-E-EECCE--EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 44444 44321 111122221111 0 01111 111234567888888842 222 33
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH 303 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl 303 (352)
+.+||+|||||++||||++.++ ..+|+++||||||++||+..+..+.+.|++++++| .+||+|||+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~---~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g----------~~vi~isH~~ 219 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHS---YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPN----------FQFIVISLKE 219 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhc---cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCC----------cEEEEEECCH
Confidence 4899999999999999998410 01389999999999999999999999999997665 5999999997
Q ss_pred HHHHhhcCEEEEEeC
Q 018638 304 STIRRAVDRLIFLYE 318 (352)
Q Consensus 304 ~~i~~~aDrv~vL~~ 318 (352)
+.+ ..||++++|.+
T Consensus 220 ~~~-~~~d~i~~~~~ 233 (247)
T cd03275 220 EFF-SKADALVGVYR 233 (247)
T ss_pred HHH-hhCCeEEEEEe
Confidence 765 67999999864
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.1e-27 Score=233.70 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=163.8
Q ss_pred CcceEEEEeEEEEeCCe--eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGEK--HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~--~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
..|.|++.+|+|.|... ..+.++++.+..-+.++++|+||+||||++|++.|-+.|.+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------------- 425 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------------
Confidence 45789999999999654 489999999999999999999999999999999999999999887654
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
+.+|+|-+|+-.=+-.++|-+ +.+....+.+..+ +.++..|..+||+ +...+.+..||||||-||++|.+...
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~- 499 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN- 499 (582)
T ss_pred cceecchhHhhhhHHHHHhHH-HHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC-
Confidence 236999999753222344433 2232223344433 4467789999997 56677789999999999999999986
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+|.+|+|||||+.||..+...+-+.|+.+ +| .||+||||.+++...|+.+|+.++|++..
T Consensus 500 ------~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~G-----------GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 ------NPHLLVLDEPTNHLDRDSLGALAKALKNF--NG-----------GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ------CCcEEEecCCCccccHHHHHHHHHHHHhc--CC-----------cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 69999999999999999999998888876 34 69999999999999999999999999865
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4e-27 Score=234.98 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
|.+.+.+..||++.+|++-++++..|..+||+|+||+|||||||+|+. |+|.....+ ++.+ =-+
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-------qE~~---g~~ 144 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-------QEVR---GDD 144 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-------hhee---ccc
Confidence 889999999999999999999999999999999999999999999998 555544321 1111 112
Q ss_pred EecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 172 VFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 172 v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
++-. ..+..+.++.+.+.--....... ...+...++|.-+|.+ +...++..+||||.|.|++|||||..
T Consensus 145 t~~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~------ 215 (582)
T KOG0062|consen 145 TEALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA------ 215 (582)
T ss_pred hHHHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc------
Confidence 2211 12333334444332211111111 2223344488899996 46677889999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE-EEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI-VWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i-v~~g~~~ 328 (352)
+|+||||||||+.||..+..-+.+.|..+. .|+|+||||-.++..+|..|+.+++-|+ ...|.-+
T Consensus 216 -~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-------------~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 216 -KPDLLLLDEPTNHLDVVAVAWLENYLQTWK-------------ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred -CCCEEeecCCcccchhHHHHHHHHHHhhCC-------------ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 699999999999999999999998887653 4999999999999999999999998776 4456555
Q ss_pred cc
Q 018638 329 EF 330 (352)
Q Consensus 329 ~~ 330 (352)
+|
T Consensus 282 ~F 283 (582)
T KOG0062|consen 282 QF 283 (582)
T ss_pred HH
Confidence 54
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=230.01 Aligned_cols=199 Identities=22% Similarity=0.288 Sum_probs=160.2
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
.+.+|++++|+..-++ ..+++|+||+|++|+-+-|.||||||||+|+|+++|||+-.+|++..-.+.- +
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----~---- 500 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----P---- 500 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----C----
Confidence 3467999999998865 4567889999999999999999999999999999999999999998644311 1
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHH
Q 018638 166 GLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKR 234 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQR 234 (352)
..+-|+||.|++-. .|.+|.+.|+........+....+++...|+.++|.+.+.+- ...||+|||||
T Consensus 501 -~~lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 24889999998654 599999999854322222222234567777877776554442 26899999999
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
++.||-+.+ +|++-||||-||++|...+..+.+.+++. | +|.|-|+|+-+...-. |.++
T Consensus 579 La~ARLfy~-------kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---g----------iT~iSVgHRkSL~kfH-d~~L 637 (659)
T KOG0060|consen 579 LAFARLFYH-------KPKFAILDECTSAVTEDVEGALYRKCREM---G----------ITFISVGHRKSLWKFH-DYVL 637 (659)
T ss_pred HHHHHHHhc-------CCceEEeechhhhccHHHHHHHHHHHHHc---C----------CeEEEeccHHHHHhhh-hEEE
Confidence 999999997 69999999999999999998888877653 4 6999999999987765 9999
Q ss_pred EEeC
Q 018638 315 FLYE 318 (352)
Q Consensus 315 vL~~ 318 (352)
-|+.
T Consensus 638 ~~~g 641 (659)
T KOG0060|consen 638 RMDG 641 (659)
T ss_pred EecC
Confidence 8875
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-26 Score=225.36 Aligned_cols=197 Identities=30% Similarity=0.443 Sum_probs=159.7
Q ss_pred CCCCCcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 84 PEDDGDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 84 ~~~~~~~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
++.-..|+|-+.||+|.| |.++.+++++|-|.=...+|||||||.||||||++|.|-+.|..|+.+-+.
T Consensus 579 p~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh---------- 648 (807)
T KOG0066|consen 579 PTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH---------- 648 (807)
T ss_pred CCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc----------
Confidence 334456889999999999 557789999999999999999999999999999999999999999875332
Q ss_pred hhccceEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-cCCCCCChHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-RLPSELSGGMKKRVALAR 239 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSGGqrQRvaIAr 239 (352)
+.+||+.-|+. .|-..-|..|++.-.+ +.+.. .+...|-.+||...++ -.+..|||||+-||++|-
T Consensus 649 ---rL~iG~FdQh~~E~L~~Eetp~EyLqr~F----Nlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValae 717 (807)
T KOG0066|consen 649 ---RLRIGWFDQHANEALNGEETPVEYLQRKF----NLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAE 717 (807)
T ss_pred ---eeeeechhhhhHHhhccccCHHHHHHHhc----CCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHH
Confidence 33799999986 4544567777765432 23433 3567899999965444 367899999999999998
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.-+. .|+||||||||++||.++...+-+.|.++. | .|||||||-..+.+..=.+||+++-
T Consensus 718 Lal~-------~PDvlILDEPTNNLDIESIDALaEAIney~--G-----------gVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 718 LALG-------GPDVLILDEPTNNLDIESIDALAEAINEYN--G-----------GVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred HhcC-------CCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-----------cEEEEecccceeeecCceEEEEccC
Confidence 7665 699999999999999999999999998863 3 6999999999887765567887765
Q ss_pred eE
Q 018638 320 KI 321 (352)
Q Consensus 320 ~i 321 (352)
.|
T Consensus 778 ~i 779 (807)
T KOG0066|consen 778 GI 779 (807)
T ss_pred Ch
Confidence 54
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.91 E-value=7.1e-24 Score=191.48 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=162.2
Q ss_pred CcceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
++..|+++++.|+|.. .+++-|+|++++.|....+||.||||||||||+|+|-.-.-.|.|.+.|.+......-. ..
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--SS 87 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc--cc
Confidence 3456999999999964 57999999999999999999999999999999999987777799999998754311100 01
Q ss_pred ceEEEEec----------CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 167 LRIGLVFQ----------SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 167 ~~ig~v~Q----------~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
-...|+-- +..+-.++++.+-| |+.. +... ++-+++++.++++ +..+.+.+|-|||+||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~---g~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG---GDDP----ERREKLIDILDID--LRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHH-hhcc---CCCh----hHhhhhhhheecc--ceEEEeeccccchhhhH
Confidence 12344332 12222356775544 5431 2222 2234566666664 55678899999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++.|++ .=++|||||-|--||..++..+++.+++-.++.+ +|||+.||-.+-++....+++.|
T Consensus 158 icMGLL~-------PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rg---------atIVYATHIFDGLe~Wpthl~yi 221 (291)
T KOG2355|consen 158 ICMGLLK-------PFKVLLLDEVTVDLDVLARADLLEFLKEECEQRG---------ATIVYATHIFDGLETWPTHLVYI 221 (291)
T ss_pred HHHhccc-------ceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcC---------cEEEEEeeeccchhhcchhEEEe
Confidence 9999996 2499999999999999999999999999776521 79999999999999999999999
Q ss_pred eCCeEEEee
Q 018638 317 YEGKIVWQG 325 (352)
Q Consensus 317 ~~G~iv~~g 325 (352)
++|+|+..-
T Consensus 222 ~~Gkl~~~l 230 (291)
T KOG2355|consen 222 KSGKLVDNL 230 (291)
T ss_pred cCCeeeecc
Confidence 999998743
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.91 E-value=1.2e-24 Score=197.83 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=111.7
Q ss_pred eeEeeeEEEeCCc-EEEEEcCCCchHHHHHHHHH--------cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 106 ILRGVSFKIRHGE-AVGIIGPSGTGKSTILKIIA--------GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 106 ~L~~vsl~i~~Ge-~~~IiGpNGsGKSTLlk~l~--------Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
.+-++||++.+|+ +++|+||||||||||+|+|+ |+.-|....+ .++|+.|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-------------------~~~~~~~~~ 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-------------------SLPVFENIF 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-------------------cCcCccEEE
Confidence 3568999999995 89999999999999999998 4333321000 123322221
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
. .++..+..++..+++|+||||++.|++++. +|+++|
T Consensus 77 ~-----------------------------------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~--------~p~lll 113 (200)
T cd03280 77 A-----------------------------------DIGDEQSIEQSLSTFSSHMKNIARILQHAD--------PDSLVL 113 (200)
T ss_pred E-----------------------------------ecCchhhhhcCcchHHHHHHHHHHHHHhCC--------CCcEEE
Confidence 1 112222344556799999999999999863 699999
Q ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 257 YDEPTAGLDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+||||++||+..+..+. .+++++.+.+ .++|++||+. .+..+||++++|++|+++.++
T Consensus 114 lDEp~~glD~~~~~~i~~~~l~~l~~~~----------~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 114 LDELGSGTDPVEGAALAIAILEELLERG----------ALVIATTHYG-ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence 99999999999999986 5788887665 5999999985 556789999999999998774
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=7.9e-24 Score=194.85 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=114.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
++++.+++.+| +.+|+|||||||||||.+|.-.+-.+.... ........+.... .....|-..++...- .. ..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g-~~~~~v~~~~~~~~~--~~-~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRG-CDEGTIEIELYGNPG--NI-QVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCC-CCcEEEEEEEEeCCC--cc-ccC
Confidence 35667777665 789999999999999999986663222110 0110000000000 000123333332110 00 112
Q ss_pred HHHhhhhh-----cCCCCHHHHHHHHHHHHHHcCC-CcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 187 NVGFLLYE-----NSKMRDEQISELVKENLAAVGL-KGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 187 ni~~~~~~-----~~~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
|+.+.... ...+.. .+.+..++- .++.+..+.+||+|||||+.+|++|+.. ...+|+++|+|||
T Consensus 88 n~~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~---~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQ---ELTRCPFRVVDEI 157 (213)
T ss_pred CceEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHH---hccCCCEEEEecc
Confidence 22211000 000111 122333332 3445678899999999999888665410 0126999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcC--EEEEEeCCe
Q 018638 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVD--RLIFLYEGK 320 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aD--rv~vL~~G~ 320 (352)
|++||+..+..+++.|.+++++ |. .|+|++||++..+...|| +|++|++|+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~---------~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGT---------SQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCC---------ceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999999999765 42 479999999988888877 788999886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=3.3e-24 Score=211.75 Aligned_cols=194 Identities=31% Similarity=0.423 Sum_probs=141.0
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChhh
Q 018638 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~~ 163 (352)
++..+||.. ..|..+- ..++|.++||+||||-||||-+|+|+|.+.|.=|+-. |.|..+..+...-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 467888742 2333322 3578999999999999999999999999999866431 11111100000000
Q ss_pred hccceEEEEec----CCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQ----SAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q----~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
-...++..=+| -|..+. -+|.|-+.-. ......+++.++++|+..++|.+++|||||.||+|||.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~K-G~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVK-GKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred cCCcceecchHHHHHHHHHhc-chHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 00012233333 233333 3666654321 11124678899999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|+++ +++++++|||+|.||...+-...+++++|.+.+ ++||+|.||+..+.-++|-|.++..
T Consensus 227 ~l~r-------dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~----------k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 227 ALLR-------DADVYFFDEPSSYLDIRQRLNAARVIRELAEDG----------KYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHhc-------cCCEEEEcCCcccccHHHHHHHHHHHHHHhccC----------CeEEEEechHHHHHHhhheeEEEec
Confidence 9997 599999999999999999999999999999875 4999999999999999999999874
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.88 E-value=8.5e-23 Score=186.14 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=111.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+.+++|++|+. |++++|+||||||||||+|+|+|... +.+.|.++.. -.+++|...+|+.+|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~~~~~q~~~l~~~~~ 75 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------SSFELPPVKIFTSIR 75 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------CccCcccceEEEecc
Confidence 45788888775 79999999999999999999988553 2235554321 136778667899999
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.||+.++... ...+. +++.++++.+++ . +|+++|+||||+|
T Consensus 76 ~~d~l~~~~s~----~~~e~-~~~~~iL~~~~~--------------------------~-------~p~llllDEp~~g 117 (199)
T cd03283 76 VSDDLRDGISY----FYAEL-RRLKEIVEKAKK--------------------------G-------EPVLFLLDEIFKG 117 (199)
T ss_pred chhccccccCh----HHHHH-HHHHHHHHhccC--------------------------C-------CCeEEEEecccCC
Confidence 99999886521 12333 457788888763 3 5999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh--cCEEEEE
Q 018638 264 LDPIASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA--VDRLIFL 316 (352)
Q Consensus 264 LD~~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~--aDrv~vL 316 (352)
+|+.....+. .+++++.+.+ .|+|++||+++.+..+ .++|-.+
T Consensus 118 lD~~~~~~l~~~ll~~l~~~~----------~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 118 TNSRERQAASAAVLKFLKNKN----------TIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHCC----------CEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 9999988775 5788887655 5999999999998776 4555544
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.3e-22 Score=220.37 Aligned_cols=206 Identities=28% Similarity=0.418 Sum_probs=170.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC---CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP---DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p---~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
..+|+|+|.-+++|+++.++||.|||||||+++++|-++- ..|+|.+||.+...... +..++|+.|+...+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p 202 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFP 202 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-----CceEEeccccccccc
Confidence 4699999999999999999999999999999999998754 25799999998654322 335999999999999
Q ss_pred CCCHHHHHHhhhhhcCC------CCHHHHH-HHHHHHHHHcCCCccccc-----CCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 181 SLTVRENVGFLLYENSK------MRDEQIS-ELVKENLAAVGLKGVEDR-----LPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~------~~~~~~~-~~v~~~l~~~gL~~~~~~-----~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
.|||+|-+.|.+..... ..+.+.. ...+.+++.+||+.-.|. ..+..|||||+||++|-+++.
T Consensus 203 ~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~----- 277 (1391)
T KOG0065|consen 203 ELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG----- 277 (1391)
T ss_pred eeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec-----
Confidence 99999999998743221 2222222 245679999999765554 457999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+++++.+||+|.|||..+.-++.+.|+.+.+-.+ .|++++-|+. +++-++.|.|++|.+|+++..|+.
T Consensus 278 --~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~---------~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~ 346 (1391)
T KOG0065|consen 278 --PASILFWDEITRGLDSSTAFQIIKALRQLAHITG---------ATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPR 346 (1391)
T ss_pred --CcceeeeecccccccHHHHHHHHHHHHHHHhhhc---------ceEEEEeccCChHHHHhhhheeeeeccceEEeccH
Confidence 6999999999999999999999999999976532 5777777776 477778899999999999999988
Q ss_pred ccc
Q 018638 328 HEF 330 (352)
Q Consensus 328 ~~~ 330 (352)
++.
T Consensus 347 d~~ 349 (1391)
T KOG0065|consen 347 DEV 349 (1391)
T ss_pred HHH
Confidence 764
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=5.8e-22 Score=177.67 Aligned_cols=78 Identities=31% Similarity=0.418 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 227 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 227 LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
||+|||||++|||+++.. ...+|+++|+|||+++||+..+..+.+.|.++.++| .|+|++||+++.+
T Consensus 95 LS~Ge~~r~~Laral~~~---~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g----------~tiIiiSH~~~~~ 161 (178)
T cd03239 95 LSGGEKSLSALALIFALQ---EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHT----------SQFIVITLKKEMF 161 (178)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHH
Confidence 999999999999999620 002699999999999999999999999999987665 5999999999887
Q ss_pred HhhcCEEEEEeC
Q 018638 307 RRAVDRLIFLYE 318 (352)
Q Consensus 307 ~~~aDrv~vL~~ 318 (352)
. .+|+++.+.+
T Consensus 162 ~-~adrvi~i~~ 172 (178)
T cd03239 162 E-NADKLIGVLF 172 (178)
T ss_pred h-hCCeEEEEEE
Confidence 5 6899999975
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2e-21 Score=185.24 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
.|||||+||++||++++.- ...+|+++|+||||++||+..+..+.+.|+++.+ + .|+|++||+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~---~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~----------~tii~isH~~~~ 235 (276)
T cd03241 170 IASGGELSRLMLALKAILA---RKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-S----------HQVLCITHLPQV 235 (276)
T ss_pred hcChhHHHHHHHHHHHHHh---cCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEechHHH
Confidence 4999999999999976530 0015999999999999999999999999999864 3 499999999986
Q ss_pred HHhhcCEEEEEeCCeE
Q 018638 306 IRRAVDRLIFLYEGKI 321 (352)
Q Consensus 306 i~~~aDrv~vL~~G~i 321 (352)
. .+||++++|.+|..
T Consensus 236 ~-~~~d~~~~l~~~~~ 250 (276)
T cd03241 236 A-AMADNHFLVEKEVE 250 (276)
T ss_pred H-HhcCcEEEEEEecC
Confidence 4 68999999998754
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.87 E-value=1e-22 Score=203.93 Aligned_cols=186 Identities=24% Similarity=0.299 Sum_probs=144.0
Q ss_pred EEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
|.++||-.--+. ..++..++|+|++|-.+-|+||||||||+|+|+|.||||...|...+- + +.++-
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P--------~-----~~~mF 548 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP--------R-----PNNIF 548 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC--------C-----CcceE
Confidence 888888876654 457799999999999999999999999999999999999866655431 1 12589
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhh----cCCCCHHHHHHHHHHHHHHcCCCcccccCC---------CCCChHHHHHHHH
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYE----NSKMRDEQISELVKENLAAVGLKGVEDRLP---------SELSGGMKKRVAL 237 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~----~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~---------~~LSGGqrQRvaI 237 (352)
|+||.|++- .-|.+|.|.++-.. .++..++ ....+|..+.|+..+.|-. ..||||||||+++
T Consensus 549 YIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 549 YIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred eccCCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 999999876 56899998776321 1223322 2455677777765555443 5899999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
||.+.+ +|+..+|||-|++..+..+..+.+..++. | .+.|-|||+.....-. ..++-.
T Consensus 624 ARm~yH-------rPkyalLDEcTsAvsidvE~~i~~~ak~~---g----------i~llsithrpslwk~h-~~ll~~ 681 (728)
T KOG0064|consen 624 ARMFYH-------RPKYALLDECTSAVSIDVEGKIFQAAKDA---G----------ISLLSITHRPSLWKYH-THLLEF 681 (728)
T ss_pred HHHHhc-------CcchhhhhhhhcccccchHHHHHHHHHhc---C----------ceEEEeecCccHHHHH-HHHHhc
Confidence 999997 69999999999999999888888776542 3 6899999999887644 444444
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=191.56 Aligned_cols=181 Identities=31% Similarity=0.433 Sum_probs=143.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--------CCCceEEEECCEeCCCCCChhhhccceEEEEecC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--------~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
..+|+||||+|++|++++|+|+|||||||||++|+|.. +||+|.|.+--..+ -+++|-.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------------~a~iPge 462 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------------SALIPGE 462 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------------hhccCcc
Confidence 45899999999999999999999999999999999964 68899887632211 1344543
Q ss_pred CC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc--ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 176 AA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG--VEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 176 ~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~--~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
.- -|..-|+.|.+.-- . .+. ..+.++|.++|+.+ +..+.+++||-|||.|+.||+++.. .|
T Consensus 463 ~Ep~f~~~tilehl~s~----t-GD~----~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae-------rp 526 (593)
T COG2401 463 YEPEFGEVTILEHLRSK----T-GDL----NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE-------RP 526 (593)
T ss_pred cccccCchhHHHHHhhc----c-Cch----hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc-------CC
Confidence 21 13355676665321 1 111 12467899999965 5567889999999999999999986 69
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCeEE
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGKIV 322 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~iv 322 (352)
.+++.||-.|.||+.+...+..-|.+++++-+ .|++++||+.+.+..+ -|.++.+.=|+..
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~g---------iTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAG---------ITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC---------CeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999987632 6999999999999888 6998888766653
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=1e-20 Score=213.96 Aligned_cols=122 Identities=21% Similarity=0.318 Sum_probs=105.7
Q ss_pred HHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 018638 207 VKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGEN 285 (352)
Q Consensus 207 v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~ 285 (352)
..+.|..+||.. .+.++..+|||||.||+-||.-|... ...+.++||||||.||++...+.++++|++|...|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~----~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g-- 1752 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLP----PKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG-- 1752 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcC----CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC--
Confidence 457889999975 57889999999999999999999752 12368999999999999999999999999999887
Q ss_pred CCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe------CCeEEEeecccccccCCcHHHHHHhc
Q 018638 286 GLANPGNIASYVVVTHQHSTIRRAVDRLIFLY------EGKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 286 ~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~------~G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
.|||+|.||++.+.. ||.|+-|- .|+|++.|+|+++....+.++..+++
T Consensus 1753 --------~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1753 --------HSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred --------CeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 499999999999987 89999984 57999999999987666667777664
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=1.2e-21 Score=181.57 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=114.7
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~ 181 (352)
...+.+|++++++++++++|.||||+|||||+++++-. .-.. ++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la--~~g~~vpa~~~~~~- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMA--QIGCFVPCDSADIP- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHH--HhCCCcCcccEEEe-
Confidence 45689999999999999999999999999999999911 0011 344 5655432222
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH--hccCCCCCCCCcEEEEeC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL--~~~~~~~a~~p~llLLDE 259 (352)
+ +++++.++++.+. ....+|.|++|++.+++++ +. +|+++||||
T Consensus 72 --~----------------------~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~-------~~sLvLLDE 117 (222)
T cd03285 72 --I----------------------VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSAT-------ENSLIIIDE 117 (222)
T ss_pred --c----------------------cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCC-------CCeEEEEec
Confidence 1 1233455566543 3578999999999999999 54 699999999
Q ss_pred C---CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 260 P---TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 260 P---tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
| |++||+..... ..++.+.++ + .++|++||+ .++.++||++..+++|++...+.
T Consensus 118 p~~gT~~lD~~~~~~--~il~~l~~~~~----------~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 118 LGRGTSTYDGFGLAW--AIAEYIATQIK----------CFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CcCCCChHHHHHHHH--HHHHHHHhcCC----------CeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9 99999988753 344555443 4 589999996 77788999999999999987663
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=4.3e-21 Score=169.05 Aligned_cols=143 Identities=29% Similarity=0.375 Sum_probs=103.0
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~e 186 (352)
...++.+.++.++.|+|||||||||+++.+....-...|.+.... +. +.| ++++...-+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~------------~~g~~~~~~~~~~------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV------------KAGCIVAAVSAEL------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc------------cCCCcceeeEEEE-------
Confidence 444555566679999999999999999998877665555444311 10 011 111111001
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
+ +. ..+||+||+||++||++|.... ..+|+++|+|||++|+|+
T Consensus 72 -i-~~--------------------------------~~~lS~G~~~~~~la~~L~~~~---~~~~~llllDEp~~gld~ 114 (162)
T cd03227 72 -I-FT--------------------------------RLQLSGGEKELSALALILALAS---LKPRPLYILDEIDRGLDP 114 (162)
T ss_pred -e-hh--------------------------------eeeccccHHHHHHHHHHHHhcC---CCCCCEEEEeCCCCCCCH
Confidence 0 00 0019999999999999998520 015899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
..+..+.+.+.++.+++ .++|++||+++.+.. +|+++.|+.
T Consensus 115 ~~~~~l~~~l~~~~~~~----------~~vii~TH~~~~~~~-~d~~~~l~~ 155 (162)
T cd03227 115 RDGQALAEAILEHLVKG----------AQVIVITHLPELAEL-ADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHh-hhhEEEEEE
Confidence 99999999999986655 599999999998865 799999965
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=6.3e-21 Score=207.08 Aligned_cols=135 Identities=28% Similarity=0.441 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHhhhhhcCCCCH----------HHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+..+||.|.+.|. ... ..+. .++.+++. +|+.+||.++ +++.+.+|||||+|||+||+||+.+
T Consensus 434 ~~~~~v~~~~~~~-~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~--- 507 (943)
T PRK00349 434 VSELSIGEALEFF-ENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSG--- 507 (943)
T ss_pred HhcCcHHHHHHHH-Hhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhC---
Confidence 3468999999883 222 1222 23445553 7889999876 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~i 321 (352)
.+|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||+|++| ++|+|
T Consensus 508 --~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G----------~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i 574 (943)
T PRK00349 508 --LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG----------NTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV 574 (943)
T ss_pred --CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEE
Confidence 2249999999999999999999999999998776 59999999999986 59999999 99999
Q ss_pred EEeeccccccc
Q 018638 322 VWQGMTHEFTS 332 (352)
Q Consensus 322 v~~g~~~~~~~ 332 (352)
++.|+++++..
T Consensus 575 v~~g~~~e~~~ 585 (943)
T PRK00349 575 VASGTPEEIMK 585 (943)
T ss_pred eeccCHHHHhc
Confidence 99999888754
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=9.3e-20 Score=190.28 Aligned_cols=122 Identities=26% Similarity=0.367 Sum_probs=103.9
Q ss_pred HHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCC
Q 018638 208 KENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENG 286 (352)
Q Consensus 208 ~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~ 286 (352)
.+.|..+||.. .+-++..+|||||.|||-||.-|.+. +...-++||||||+||-..-...+++.|.+|..+|
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~----~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~G--- 875 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKR----STGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG--- 875 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhc----cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC---
Confidence 45678899974 56788999999999999999999863 44568999999999999999999999999999987
Q ss_pred CCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 287 LANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 287 ~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
-|||+|.|+|+.+.. ||.|+=| ..|+|++.|+|+++......++..|+..
T Consensus 876 -------nTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 876 -------NTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred -------CEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 499999999999875 7999988 3679999999999875545566666543
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.2e-20 Score=204.47 Aligned_cols=135 Identities=28% Similarity=0.388 Sum_probs=108.3
Q ss_pred CCCHHHHHHhhhhhcCCCC--------HHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 181 SLTVRENVGFLLYENSKMR--------DEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~--------~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
.|||.|.+.|......... -.++.+++ +.|..+||..+ +++.+.+|||||+|||+||++|+.+ ..
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~-----~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSG-----LT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhC-----CC
Confidence 5788888777532110000 01223332 34778899765 7999999999999999999999963 23
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEee
Q 018638 252 PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQG 325 (352)
Q Consensus 252 p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g 325 (352)
|+++||||||+|||+.....+.++|++|+++| .|||+|+||++++. .||+|++| ++|+|++.|
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G----------~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLG----------NTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeecc
Confidence 58999999999999999999999999998876 59999999999986 89999999 999999999
Q ss_pred ccccccc
Q 018638 326 MTHEFTS 332 (352)
Q Consensus 326 ~~~~~~~ 332 (352)
+++++..
T Consensus 577 ~~~el~~ 583 (924)
T TIGR00630 577 TPEEILA 583 (924)
T ss_pred CHHHHhc
Confidence 8888743
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7.4e-22 Score=194.30 Aligned_cols=213 Identities=25% Similarity=0.381 Sum_probs=152.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChh-----h
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDE-----E 163 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~-----~ 163 (352)
-|.++|.+.+-.++..+.+.||.|-.|..+|||||||-||||||+.|+.- --|..=.|.+..+.+....... .
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 38999999999889999999999999999999999999999999999853 2233344555544432110000 0
Q ss_pred hccceEEEEecCCC----C-CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAA----L-FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~----l-~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaI 237 (352)
...++..++-.... + -...|+.|-+.-.+...+.......+.++..+|.-+|.+ +.-+++...+|||.|.||+|
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 00001111111110 0 123566665543332222121222344567788888886 46677778999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||.. +|-+|+|||||++||..+...+-..|..++ .|+++||||..++..+|..|+.|+
T Consensus 424 ARALfl-------EPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-------------KTLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 424 ARALFL-------EPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-------------KTLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred HHHHhc-------CceeeeecCCccccccceeeehhhHHhhhh-------------heeEEEecccchHHHHHHHHhhhh
Confidence 999984 799999999999999999988888887765 389999999999999999999999
Q ss_pred CCeEEE
Q 018638 318 EGKIVW 323 (352)
Q Consensus 318 ~G~iv~ 323 (352)
+-++..
T Consensus 484 ~qkLhy 489 (807)
T KOG0066|consen 484 NQKLHY 489 (807)
T ss_pred hhhhhh
Confidence 988743
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.82 E-value=8.7e-21 Score=172.59 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=102.7
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
-..++++.+|++++|+||||||||||+++|++.. .+..|.... . . ...+++..|... .++..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---------~---~~~i~~~dqi~~---~~~~~d 83 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---------E---SASIPLVDRIFT---RIGAED 83 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---------c---ccccCCcCEEEE---EecCcc
Confidence 3455666689999999999999999999999543 222232110 0 0 112444322211 111111
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
......+.++.+++| +..+.+++. +|+++|+||||+|+|+
T Consensus 84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~-------~~~llllDEp~~gld~ 123 (202)
T cd03243 84 --------------------------------SISDGRSTFMAELLE-LKEILSLAT-------PRSLVLIDELGRGTST 123 (202)
T ss_pred --------------------------------cccCCceeHHHHHHH-HHHHHHhcc-------CCeEEEEecCCCCCCH
Confidence 122233456777776 444455554 6999999999999999
Q ss_pred HHHHHHHH-HHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 267 IASTVVED-LIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 267 ~~~~~l~~-ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.....+.. +++.+.+.+ .++|++||+.+.+. .++++..++.|++..++...+
T Consensus 124 ~~~~~l~~~ll~~l~~~~----------~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 124 AEGLAIAYAVLEHLLEKG----------CRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHHHHHHhcC----------CeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 98887754 566666555 58999999987766 568999999999988876433
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=9.1e-20 Score=166.94 Aligned_cols=143 Identities=21% Similarity=0.221 Sum_probs=107.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~ 181 (352)
...+.+|++|++++|++++|+||||+||||++++++++. + .. ++| +| |..+..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~-------------la--~~G~~v---pa~~~~ 68 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------I-------------MA--QIGCFV---PAEYAT 68 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------H-------------HH--HcCCCc---chhhcC
Confidence 456899999999999999999999999999999999984 0 01 222 22 444556
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
++++|+|.. .++..+...+..+++|+|++|+. .+.+++. +|+++|+|||+
T Consensus 69 l~~~d~I~~----------------------~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~-------~~~lvllDE~~ 118 (204)
T cd03282 69 LPIFNRLLS----------------------RLSNDDSMERNLSTFASEMSETA-YILDYAD-------GDSLVLIDELG 118 (204)
T ss_pred ccChhheeE----------------------ecCCccccchhhhHHHHHHHHHH-HHHHhcC-------CCcEEEecccc
Confidence 677777733 12333345567788999999764 4444554 69999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 262 AGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 262 sgLD~~~~~~l-~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
+|+|+.....+ .++++.+.+.+ .++|++||+.+.+..+++
T Consensus 119 ~gt~~~~~~~l~~~il~~l~~~~----------~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 119 RGTSSADGFAISLAILECLIKKE----------STVFFATHFRDIAAILGN 159 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHHHhhc
Confidence 99999776555 55677777665 599999999999887653
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.7e-19 Score=169.11 Aligned_cols=84 Identities=23% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 224 PSELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
...||+||||+++|||+|+.-. .....+|+++|+||||++||+..+..+.+.|.++. .+++++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--------------q~ii~~~ 246 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--------------QTFVTTT 246 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--------------CEEEEeC
Confidence 4568999999999999985100 00002699999999999999999999998887642 3567777
Q ss_pred CHHHHHhhc---CEEEEEeCCeE
Q 018638 302 QHSTIRRAV---DRLIFLYEGKI 321 (352)
Q Consensus 302 dl~~i~~~a---Drv~vL~~G~i 321 (352)
+...+..+| ++++.+++|+|
T Consensus 247 ~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 247 DLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CchhccchhccCccEEEEeCcEE
Confidence 777777777 78999999986
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.79 E-value=8.1e-19 Score=172.60 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=142.6
Q ss_pred EEeCC-eeeeEeeeEEEeCCc-----EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEE
Q 018638 99 KSFGE-KHILRGVSFKIRHGE-----AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 172 (352)
Q Consensus 99 ~~y~~-~~~L~~vsl~i~~Ge-----~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v 172 (352)
++|++ +.-+.+..|.|..|+ ++..+|.||.|||||+++++|.++|++|. ++. ...|+|=
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p---------~lnVSyk 407 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP---------VLNVSYK 407 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc---------ccceecc
Confidence 34543 456788999999885 68999999999999999999999999761 111 1248888
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
||...--..-||++-+.--.+. ..+. .+.+.+.++-+.+++..++.+.+|||||+||||||.+|=+ .+
T Consensus 408 pqkispK~~~tvR~ll~~kIr~-ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK-------pA 475 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHTKIRD-AYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK-------PA 475 (592)
T ss_pred ccccCccccchHHHHHHHHhHh-hhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC-------CC
Confidence 8876543345888866432110 0011 2346677888888999999999999999999999999976 58
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
++++.|||.+-||.+.+..--..++++.-+.+ .|-.+|.||+-.+--.+|||++.+.
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhak---------ktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAK---------KTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhcc---------chhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999999999888888888643321 4899999999999889999988753
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.77 E-value=1.5e-18 Score=160.06 Aligned_cols=159 Identities=21% Similarity=0.229 Sum_probs=108.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
...+.+|++|++.+ ++++|+||||||||||+|+++++.-. |+ .|..+. . ...+++++.| +|+.+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~---~~~~i~~~~~---i~~~~ 80 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----A---SKAEIGVVDR---IFTRI 80 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----c---ccceecceee---EeccC
Confidence 34588999999887 99999999999999999999875421 11 121111 1 1225788865 56788
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP-- 260 (352)
++.||+..+. |.=...+..|++++.. +.+|+++|||||
T Consensus 81 ~~~~~ls~g~-----------------------------------s~f~~e~~~l~~~l~~-----~~~~~llllDEp~~ 120 (216)
T cd03284 81 GASDDLAGGR-----------------------------------STFMVEMVETANILNN-----ATERSLVLLDEIGR 120 (216)
T ss_pred CchhhhccCc-----------------------------------chHHHHHHHHHHHHHh-----CCCCeEEEEecCCC
Confidence 8888886532 1112233334444432 236999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 261 -TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 261 -tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+++|.... ...++..+.+. + .++|++||+.+ +.+++|++..+++|++...+..+++
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~----------~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIG----------AKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccC----------CcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888887552 34455555554 4 58999999975 4567898888888988877766554
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.77 E-value=2.2e-18 Score=164.05 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=103.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (352)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.......+.. ..++++||+. +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPK------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchH-------
Confidence 578999999999999999999999999999999999975432223332 2478888864 4556677666311
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 018638 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (352)
Q Consensus 198 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~ 277 (352)
. . |+ ..++|++ +|+++|+|||++ ...+..+++
T Consensus 183 ---~------~---------------------~~---~~~i~~~---------~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 183 ---A------E---------------------GM---MMLIRSM---------SPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred ---H------H---------------------HH---HHHHHhC---------CCCEEEEeCCCc------HHHHHHHHH
Confidence 0 0 00 3444443 699999999974 344555555
Q ss_pred HHHHcCCCCCCCCCCceEEEEEcCCHHH--H-----------HhhcCEEEEEeCCeEEEeecccccc
Q 018638 278 SVHKKGENGLANPGNIASYVVVTHQHST--I-----------RRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tvIivTHdl~~--i-----------~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.+. .| .++|++||+.+. + ..++||+++|++|+ ..|+++++.
T Consensus 215 ~~~-~G----------~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 215 ALH-AG----------VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHh-CC----------CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 554 45 599999997665 4 36689999999887 667666654
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.69 E-value=2.8e-17 Score=147.86 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=63.2
Q ss_pred cCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCC
Q 018638 214 VGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPG 291 (352)
Q Consensus 214 ~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~ 291 (352)
+++.+..++..+++|+|++|...+++.. .+|+++|+|||++|+|+.....+ ..+++.+.++ +
T Consensus 49 ~~~~d~~~~~~s~fs~~~~~l~~~l~~~--------~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~-------- 112 (185)
T smart00534 49 IGASDSLAQGLSTFMVEMKETANILKNA--------TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIG-------- 112 (185)
T ss_pred eCCCCchhccccHHHHHHHHHHHHHHhC--------CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC--------
Confidence 3444555677889999998854444432 36999999999999999977776 4666777664 4
Q ss_pred CceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 292 NIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 292 ~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
.++|++||+++ +.+++|+---++++++
T Consensus 113 --~~iii~TH~~~-l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 113 --ALTLFATHYHE-LTKLADEHPGVRNLHM 139 (185)
T ss_pred --CeEEEEecHHH-HHHHhhcCccceEEEE
Confidence 58999999996 5567775333344443
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=9.5e-16 Score=141.20 Aligned_cols=141 Identities=22% Similarity=0.225 Sum_probs=95.5
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH--cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC-CC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF-DS 181 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~--Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~-~~ 181 (352)
.+-+|+++.=..+.+++|+||||+|||||||.++ +++ +..|...... ..+++|..|...-+ ..
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------------~~~~~~~d~i~~~l~~~ 82 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------------SATIGLVDKIFTRMSSR 82 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------------CcEEeeeeeeeeeeCCc
Confidence 3455666542223799999999999999999998 444 5667655431 11478877764322 22
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
.++.+++. .+ .-+-||+++|++++. +|.++|+|||+
T Consensus 83 ~si~~~~S------------------------------------~f-~~el~~l~~~l~~~~-------~~slvllDE~~ 118 (213)
T cd03281 83 ESVSSGQS------------------------------------AF-MIDLYQVSKALRLAT-------RRSLVLIDEFG 118 (213)
T ss_pred cChhhccc------------------------------------hH-HHHHHHHHHHHHhCC-------CCcEEEecccc
Confidence 23322220 00 225689999999985 69999999999
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 262 AGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 262 sgLD~~~~-~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+|+... ..+..+++++.+.+. +..++|++||+++.+....
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~-------~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGP-------ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCC-------CCcEEEEEcChHHHHHhhh
Confidence 99999764 444678888876421 0037999999999988763
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.64 E-value=7.9e-15 Score=145.18 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
..+|.||+|+++||++|+.-. .....+|+|+|||||+++||+..+..+.+.+.++ + ..++++||+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~----------~qv~it~~~ 338 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---G----------AQVFITTTD 338 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---C----------CEEEEEcCC
Confidence 589999999999999986100 0000269999999999999999999999888754 2 368999999
Q ss_pred HHHHHhhc--CEEEEEeCCeE
Q 018638 303 HSTIRRAV--DRLIFLYEGKI 321 (352)
Q Consensus 303 l~~i~~~a--Drv~vL~~G~i 321 (352)
.+.+...+ ++++.|++|+|
T Consensus 339 ~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 339 LEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhhhhhhccCcEEEEeCCEE
Confidence 88876663 58999999987
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.64 E-value=1.2e-16 Score=146.64 Aligned_cols=181 Identities=25% Similarity=0.353 Sum_probs=101.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC--CCCceEEEECCEeCCCCCCh----hhhccceEEEEecCCCCC-
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL--APDKGEVYIRGRKRAGLISD----EEISGLRIGLVFQSAALF- 179 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~--~p~~G~I~i~G~~~~~~~~~----~~~~~~~ig~v~Q~~~l~- 179 (352)
+...+.+.+ .++.|+|||||||||++.+|. .|- +..+.+ +.....+... .......|...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 466667665 499999999999999999993 333 111111 1111111100 011111356666554321
Q ss_pred ---C-CCCHHHHHHh-h--hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 180 ---D-SLTVRENVGF-L--LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 180 ---~-~lTV~eni~~-~--~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
. ...+...+.- . -+...+. ....+.+.+.+..+.+... .||||||.+++||--|+.. ...+.
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~--~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~---~~~~~ 159 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGK--KVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQ---RYKPS 159 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTE--EE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHH---TCS--
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccc------ccccccccccccccccccc---ccccc
Confidence 0 0000000000 0 0000001 1112335566666666432 9999999999999877532 23467
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 253 EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 253 ~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
+++|||||.++||...+..+.++|+++.++ .-+|++||+..+... ||+.+.+
T Consensus 160 p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-----------~Q~ii~Th~~~~~~~-a~~~~~v 211 (220)
T PF02463_consen 160 PFLILDEVDAALDEQNRKRLADLLKELSKQ-----------SQFIITTHNPEMFED-ADKLIGV 211 (220)
T ss_dssp SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-----------SEEEEE-S-HHHHTT--SEEEEE
T ss_pred cccccccccccccccccccccccccccccc-----------ccccccccccccccc-ccccccc
Confidence 999999999999999999999999998654 369999999887665 5886655
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.62 E-value=4.1e-16 Score=167.34 Aligned_cols=152 Identities=21% Similarity=0.265 Sum_probs=102.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCC-cEEEEEcCCCchHHHHHHHHHcC-CCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHG-EAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~G-e~~~IiGpNGsGKSTLlk~l~Gl-~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|.++++..-+-...-.-.+|+++..+ ++++|+||||+|||||||+|+|+ +.+..|-
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------- 353 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence 466666654221110112478888887 99999999999999999999987 3333331
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
+||..... .+.+++++.. .... ++......+++|+||+|++.|++++-
T Consensus 354 --~Vpa~~~~--~~~~~d~i~~------~i~~----------------~~si~~~LStfS~~m~~~~~il~~~~------ 401 (771)
T TIGR01069 354 --PIPANEHS--EIPYFEEIFA------DIGD----------------EQSIEQNLSTFSGHMKNISAILSKTT------ 401 (771)
T ss_pred --CccCCccc--cccchhheee------ecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhcC------
Confidence 33333210 0111222210 0111 11122347789999999999998873
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
+|.++|+|||++|+|+.....+ ..++..+.+.| .++|++||+.+...
T Consensus 402 --~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g----------~~viitTH~~eL~~ 449 (771)
T TIGR01069 402 --ENSLVLFDELGAGTDPDEGSALAISILEYLLKQN----------AQVLITTHYKELKA 449 (771)
T ss_pred --CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC----------CEEEEECChHHHHH
Confidence 5999999999999999999988 57888887766 58999999988644
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.59 E-value=1.5e-15 Score=125.29 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+|++++|++++|++++|+||||||||||++++. +|+|.++|.++.... ... .++.++|++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~-~~~-~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIR-EDS-KDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhh-hhh-cCCEEEEechh--cch-hh
Confidence 56899999999999999999999999999999986 899999999876532 211 22346788787 564 59
Q ss_pred HHHHHHhhh
Q 018638 184 VRENVGFLL 192 (352)
Q Consensus 184 V~eni~~~~ 192 (352)
++|||.++.
T Consensus 71 i~~Ni~~~~ 79 (107)
T cd00820 71 LRLNIFLIT 79 (107)
T ss_pred HHhhceeee
Confidence 999998753
No 424
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.56 E-value=4.7e-14 Score=142.61 Aligned_cols=185 Identities=19% Similarity=0.261 Sum_probs=121.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC---C---hhhhccceEEEEecCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI---S---DEEISGLRIGLVFQSA 176 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~---~---~~~~~~~~ig~v~Q~~ 176 (352)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.... . .....++.|.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 999999999999999999999999999999999999999665432111 0 0111233588887642
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcE-E
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEV-L 255 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~l-l 255 (352)
.++.+-+.-+.. .-.+.|.+..-|-+-++ ...+|+ | .|+|+ .+| +
T Consensus 224 -----~~~~~r~~~~~~----------a~~iAEyfr~~g~~Vll--~~Dslt-----r--~A~A~----------rEisl 269 (438)
T PRK07721 224 -----QPALMRIKGAYT----------ATAIAEYFRDQGLNVML--MMDSVT-----R--VAMAQ----------REIGL 269 (438)
T ss_pred -----CCHHHHHHHHHH----------HHHHHHHHHHCCCcEEE--EEeChH-----H--HHHHH----------HHHHH
Confidence 122222211110 01123334333433211 123443 2 33333 111 4
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHH--cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 256 LYDEP--TAGLDPIASTVVEDLIRSVHK--KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 256 LLDEP--tsgLD~~~~~~l~~ll~~l~~--~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+.|| |+|+||.....+.+++.++.. +|. ++- ..||++.+||++. .+||++.+|.+|+|+.++...+
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs--IT~---~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGS--ITA---FYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC--eee---EEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 45675 679999999999999999864 230 000 0289999999995 7899999999999999987654
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=5.7e-15 Score=134.95 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred EEEEEcCCCchHHHHH-HHHHcCCCC-----------------CceEEEECCEeCCCCCChhhhc------cceEEEEec
Q 018638 119 AVGIIGPSGTGKSTIL-KIIAGLLAP-----------------DKGEVYIRGRKRAGLISDEEIS------GLRIGLVFQ 174 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLl-k~l~Gl~~p-----------------~~G~I~i~G~~~~~~~~~~~~~------~~~ig~v~Q 174 (352)
.++|+|+||||||||+ +++.|..++ +.|.|.+.+.|........... ...+-+|+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 4899999999999999 689998764 5678888877764321111000 001223332
Q ss_pred CCCCCCCCCHHHHHHhhh----h---------hcCCCC--HHHHHHHHHHHHHHcCCCcccccCCCCCChH--HHHHHHH
Q 018638 175 SAALFDSLTVRENVGFLL----Y---------ENSKMR--DEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVAL 237 (352)
Q Consensus 175 ~~~l~~~lTV~eni~~~~----~---------~~~~~~--~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG--qrQRvaI 237 (352)
-.. . .-.+++.... . .....+ .........+..+..++. +. ..+.+||+ |++++.|
T Consensus 91 ~~~---~-~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 91 VTS---R-ITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWL 163 (215)
T ss_pred CcC---H-HHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHH
Confidence 110 0 0111111000 0 000111 111111122334444432 22 23445555 9999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPT-----AGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPt-----sgLD~~~~~~l~~ll~~l~~ 281 (352)
||+++. +|+++++|||| ++||+..++.+.+.++++++
T Consensus 164 a~~l~~-------~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 164 ARRLTN-------DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHhh-------cccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999997 69999999999 99999999999999999864
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.55 E-value=3.4e-15 Score=147.27 Aligned_cols=176 Identities=27% Similarity=0.335 Sum_probs=123.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE--CCEeCCCCCChhhhccc-------------eEEEEecCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI--RGRKRAGLISDEEISGL-------------RIGLVFQSAALF 179 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i--~G~~~~~~~~~~~~~~~-------------~ig~v~Q~~~l~ 179 (352)
++|++.++||.||-||||-+++++|-++|.-|.--- +++.+.......++... +.-||-|-|...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 579999999999999999999999999998664311 01111000000000000 011111111111
Q ss_pred CCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 180 DSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 180 ~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
. .+|.+.+.- ....+...++++.+.|....+|-..+|||||.||.+||.+.++ +.++.++||
T Consensus 178 k-~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq-------~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQ-------KADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhh-------hcceeEecC
Confidence 0 122222211 1112234567888889999999999999999999999999997 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|.+.||...+..-...|+.|..-. .=||+|.||++...-+.|-+.+|..
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~----------~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPD----------RYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCC----------CeEEEEEeechHHHhhhcceeEEec
Confidence 999999999999999999987653 3699999999999999999999974
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=9.6e-14 Score=128.81 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=91.0
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+.+|++|++.+|++++|+||||+||||+++++++ .+.++.|...+.- .. +++|..|- |-.+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~------------~~~~~~~i---~~~~ 81 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA------------TLSIFDSV---LTRM 81 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce------------EEeccceE---EEEe
Confidence 468999999999999999999999999999999999 6778888765532 11 24443332 1111
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
...|++.-+ +|-=+.....+++++-. +.+|.++|+|||.+
T Consensus 82 ~~~d~~~~~-----------------------------------~StF~~e~~~~~~il~~-----~~~~sLvllDE~~~ 121 (222)
T cd03287 82 GASDSIQHG-----------------------------------MSTFMVELSETSHILSN-----CTSRSLVILDELGR 121 (222)
T ss_pred cCccccccc-----------------------------------cchHHHHHHHHHHHHHh-----CCCCeEEEEccCCC
Confidence 122222111 11111111112222211 23699999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 263 GLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 263 gLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
|.|+.....+ ..+++.+.+. + .++|++||+++...-
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~----------~~~i~~TH~~~l~~~ 159 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKK----------CLVLFVTHYPSLGEI 159 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccC----------CeEEEEcccHHHHHH
Confidence 9997776664 5677777765 4 589999999998653
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.51 E-value=6e-14 Score=132.29 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=105.8
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEeCCCCCChhhhccc-eEEEEecCCCCCCCCCHHH
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGL-RIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~~~~~~~~~~~~~~-~ig~v~Q~~~l~~~lTV~e 186 (352)
.=+.+.+|+.++|+||+|+|||||++.|++......+ .+++....-... ...++.+. .-.+|...... +...
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~-ev~el~~~I~~~~v~~~~~~----~~~~ 83 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE-EVTDMQRSVKGEVIASTFDE----PPER 83 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc-cHHHHHHHhccEEEEecCCC----CHHH
Confidence 3368899999999999999999999999998876533 323221100000 11111111 11222222111 1222
Q ss_pred HHHhh-------hhh-cCCCC----HHHHHHHHHHHHHHcCCCcccccCCCCCChHH--------HHHHHHHHHHhccCC
Q 018638 187 NVGFL-------LYE-NSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGM--------KKRVALARSIIFDNT 246 (352)
Q Consensus 187 ni~~~-------~~~-~~~~~----~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq--------rQRvaIArAL~~~~~ 246 (352)
.+... .+. ..+.+ -+++.+ ..+..+.+. -..-..+|||+ +||+++||++.+
T Consensus 84 ~~~~~~~~~~~a~~~~~~G~~vll~iDei~r-~a~a~~ev~-----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~--- 154 (249)
T cd01128 84 HVQVAEMVLEKAKRLVEHGKDVVILLDSITR-LARAYNTVV-----PPSGKILSGGVDANALHKPKRFFGAARNIEE--- 154 (249)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECHHH-hhhhhhhcc-----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCC---
Confidence 22111 000 00100 011111 112222222 22234579999 999999999876
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTV-VEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~-l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+++|.+| ||+.+|..+... ++ +.++...+ .|.|++||++.....+ |.|.||+.|++.
T Consensus 155 ----~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~----------~~~ivls~~la~~~~~-paI~vl~s~sr~ 212 (249)
T cd01128 155 ----GGSLTII--ATALVDTGSRMDDVI--FEEFKGTG----------NMELVLDRRLAERRIF-PAIDILKSGTRK 212 (249)
T ss_pred ----CCceEEe--eeheecCCCcccchH--HHHHhcCC----------CcEEEEchHHhhCCCC-CeEEEcCCCCcc
Confidence 5999999 999999655443 44 45554333 3899999999998765 999999999984
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=9.6e-14 Score=154.14 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHHhccC---CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 018638 216 LKGVEDRLPSELSGGMKKRVALARSIIFDN---TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (352)
Q Consensus 216 L~~~~~~~~~~LSGGqrQRvaIArAL~~~~---~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~ 292 (352)
+....++.+.+|||||++||+||+||+.-. .....+|++||+||||++||+.+...+++.|.++...|
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g--------- 1010 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS--------- 1010 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCC---------
Confidence 344567789999999999999999997300 00012699999999999999999999999999998766
Q ss_pred ceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 293 IASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 293 ~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
.+|+||||++++...++|+|+|++.|
T Consensus 1011 -~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1011 -KMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred -CEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 58999999999999999999999754
No 430
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=5.8e-13 Score=139.96 Aligned_cols=124 Identities=28% Similarity=0.425 Sum_probs=106.0
Q ss_pred HHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCC
Q 018638 211 LAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLAN 289 (352)
Q Consensus 211 l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~ 289 (352)
|-.+||.. -++|...+|||||.||+.||.-+=.. .--=+++||||+.||-+..-.++++.|++|+..|
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~-----LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlG------ 533 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSG-----LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLG------ 533 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhccc-----ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcC------
Confidence 44468865 46889999999999999999998542 2345789999999999999999999999999887
Q ss_pred CCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcCCCCCCC
Q 018638 290 PGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASGSLEGPI 350 (352)
Q Consensus 290 ~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
-|+|+|.||.++++. ||+|+=| +.|+|+++|++++++...+..+.++++|...-++
T Consensus 534 ----NTviVVEHDedti~~-AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLsg~~~i~v 595 (935)
T COG0178 534 ----NTVIVVEHDEDTIRA-ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTIEV 595 (935)
T ss_pred ----CeEEEEecCHHHHhh-cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhcCCcccCC
Confidence 399999999999875 7999987 4689999999999998878889999998776443
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.46 E-value=2.6e-13 Score=146.11 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=103.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE-EEecCCCCCCCCCHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG-LVFQSAALFDSLTVRE 186 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~e 186 (352)
+|+++. ..+.++.|.|||++||||+||.++... + .. ++| +||-... ..+++++
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------~-------------ma--q~G~~vpa~~~--~~i~~~~ 372 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------L-------------MA--KSGLPIPANEP--SEIPVFK 372 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------H-------------HH--HhCCCcccCCC--ccccccc
Confidence 444443 345789999999999999999996331 0 00 122 4444321 1123334
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
+|.. .+|-.+...+.++++|+||+|++.|++++- +|.++|+|||++|+||
T Consensus 373 ~i~~----------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~~--------~~sLvLlDE~~~GtDp 422 (782)
T PRK00409 373 EIFA----------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKAD--------KNSLVLFDELGAGTDP 422 (782)
T ss_pred eEEE----------------------ecCCccchhhchhHHHHHHHHHHHHHHhCC--------cCcEEEecCCCCCCCH
Confidence 4311 122233445678899999999999999983 5999999999999999
Q ss_pred HHHHHHH-HHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 267 IASTVVE-DLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 267 ~~~~~l~-~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
.....+. .++..+.+.| .++|++||+.+.....+++..++ ++.+..
T Consensus 423 ~eg~ala~aile~l~~~~----------~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 423 DEGAALAISILEYLRKRG----------AKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHHHHHHHHHHHHHCC----------CEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 9988885 4677777665 58999999999988887776654 455544
No 432
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.46 E-value=1.5e-13 Score=143.41 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
..|||||+||++||++++..++ .+|++|||||||+|||+.....+.+.|+++.+ + .+||+|||++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~---~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~----------~~vi~iTH~~~ 504 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSS---AAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-R----------HQVLCVTHLPQ 504 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C----------CEEEEEEChHH
Confidence 4789999999999999986210 13699999999999999999999999999974 4 59999999998
Q ss_pred HHHhhcCEEEEEeCCe
Q 018638 305 TIRRAVDRLIFLYEGK 320 (352)
Q Consensus 305 ~i~~~aDrv~vL~~G~ 320 (352)
.+. +||++++|++|.
T Consensus 505 ~~~-~ad~~~~l~k~~ 519 (563)
T TIGR00634 505 VAA-HADAHFKVEKEG 519 (563)
T ss_pred HHH-hcCeEEEEEEcc
Confidence 885 799999999875
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.45 E-value=1.6e-13 Score=142.43 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=68.9
Q ss_pred CCCCCChHHHHHHHHHHHHhccC---CCCCCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 223 LPSELSGGMKKRVALARSIIFDN---TKESVEPEVLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 223 ~~~~LSGGqrQRvaIArAL~~~~---~~~a~~p~llLLDEPt-sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
.+.+||||||||++||+||+... .....+|+++|||||| ++||+.....+.+.|.++ ++ .|||+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~----------~~iii 532 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KD----------TNVFV 532 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CC----------CeEEE
Confidence 56899999999999999986100 0000159999999998 789999999999999998 44 48999
Q ss_pred EcCCHHHHHhhcCEEEEEeC-CeE
Q 018638 299 VTHQHSTIRRAVDRLIFLYE-GKI 321 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~-G~i 321 (352)
|||+.+... .||++++|.+ |+.
T Consensus 533 ish~~~~~~-~~d~~~~l~~~~~~ 555 (562)
T PHA02562 533 ISHKDHDPQ-KFDRHLKMEKVGRF 555 (562)
T ss_pred EECchhchh-hhhcEEEEEEECCe
Confidence 999977664 5799999986 554
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.45 E-value=8.3e-13 Score=123.05 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=99.9
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHH-HHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTI-LKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTL-lk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+.++++.+.+++. +++|+++.|+|+|||||||| +++++++.++....+
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~---------------------- 56 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVS---------------------- 56 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE----------------------
Confidence 6677777777552 79999999999999999999 799999876433323
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
|+..+ .+..+.+..... . +.+.+ +.... +.-...+-.| .+|+++.++-.+++.+-.. ...
T Consensus 57 yi~~e------~~~~~~~~~~~~-~-g~~~~-------~~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~---~~~ 116 (230)
T PRK08533 57 YVSTQ------LTTTEFIKQMMS-L-GYDIN-------KKLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTR---RFY 116 (230)
T ss_pred EEeCC------CCHHHHHHHHHH-h-CCchH-------HHhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHH---Hhc
Confidence 33211 133333332211 0 11111 11110 1101112222 3677776666666554320 013
Q ss_pred CCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH--------HHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGL----DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST--------IRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgL----D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~--------i~~~aDrv~vL~ 317 (352)
+|+++++||||+++ |+...+.+.++++.++++| .|+ ++||+... +..+||-|+.|+
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g----------~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN----------KVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC----------CEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 8888889999999998776 344 55666543 244567777776
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.40 E-value=9.8e-13 Score=136.96 Aligned_cols=80 Identities=26% Similarity=0.391 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 226 ELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 226 ~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
.|||||+|||+||++++... ..+|+++|+|||++|||+.+...+.+.|+++.+. .+||+|||++..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~---~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~-----------~qvi~iTH~~~~ 495 (553)
T PRK10869 430 VASGGELSRIALAIQVITAR---KMETPALIFDEVDVGISGPTAAVVGKLLRQLGES-----------TQVMCVTHLPQV 495 (553)
T ss_pred hCCHHHHHHHHHHHHHHhcc---CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcC-----------CEEEEEecCHHH
Confidence 47999999999999999520 1258999999999999999999999999999643 489999999987
Q ss_pred HHhhcCEEEEEeCCe
Q 018638 306 IRRAVDRLIFLYEGK 320 (352)
Q Consensus 306 i~~~aDrv~vL~~G~ 320 (352)
+ .+||+++++.++.
T Consensus 496 ~-~~ad~~~~v~k~~ 509 (553)
T PRK10869 496 A-GCGHQHFFVSKET 509 (553)
T ss_pred H-HhCCEEEEEeccc
Confidence 6 6899999998864
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=4.6e-12 Score=117.28 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=91.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~ 181 (352)
+..+-+|++|++++|++++|.||||+||||+++++++..--. .|- .+. .. ..+++++. .+|..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vp----a~---~~~i~~~~---~i~~~ 79 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVP----AK---SMRLSLVD---RIFTR 79 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccC----cc---ccEecccc---EEEEe
Confidence 456889999999999999999999999999999999864221 121 110 00 01233221 12333
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+...|++..+.. .+. -|-+++ ++.+-. +.+|.++|+|||+
T Consensus 80 ~~~~d~~~~~~S--------------------------------tF~-~e~~~~--~~il~~-----~~~~sLvLlDE~~ 119 (218)
T cd03286 80 IGARDDIMKGES--------------------------------TFM-VELSET--ANILRH-----ATPDSLVILDELG 119 (218)
T ss_pred cCcccccccCcc--------------------------------hHH-HHHHHH--HHHHHh-----CCCCeEEEEeccc
Confidence 333444432210 000 011222 222211 1369999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 262 AGLDPIASTVVEDL-IRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 262 sgLD~~~~~~l~~l-l~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+|+.....+... ++.|.+. + .++|++||+++.+..++
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~~~~----------~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVKKVK----------CLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcC----------CcEEEEeccHHHHHHhh
Confidence 99999998888877 7777764 4 58999999999988875
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.39 E-value=2.7e-12 Score=113.99 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHcCCCcccccCCCCCChHHHH-----HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcC
Q 018638 212 AAVGLKGVEDRLPSELSGGMKK-----RVALARSIIFDNTKESVEPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 212 ~~~gL~~~~~~~~~~LSGGqrQ-----RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD---~~~~~~l~~ll~~l~~~g 283 (352)
...|.....+..+..+|+|++| +..+.+++.. .+|+++++|||++.+| ...+..+.++++.+++.|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~------~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEE------FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHH------hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 3445556678889999999998 3444444432 3799999999999999 888888999999998776
Q ss_pred CCCCCCCCCceEEEEEcCCHHH---------HHhhcCEEEEEe
Q 018638 284 ENGLANPGNIASYVVVTHQHST---------IRRAVDRLIFLY 317 (352)
Q Consensus 284 ~~~~~~~~~~~tvIivTHdl~~---------i~~~aDrv~vL~ 317 (352)
.|+|+++|+... +..+||.|+.|+
T Consensus 131 ----------~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 131 ----------VTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ----------CEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 599999998875 678899999997
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.38 E-value=2.1e-13 Score=121.01 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=62.7
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP--tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
+....|||+++-++.+++..+. +|+++|+||| +.++|+. +.+.+.++.+.+ .++|++
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~-------~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~----------~~~i~v 132 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALE-------EADVIIIDEIGKMELKSPK----FVKAVEEVLDSE----------KPVIAT 132 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccC-------CCCEEEEECCCcchhhhHH----HHHHHHHHHhCC----------CeEEEE
Confidence 4455799999999999988875 6999999995 4455544 455666655555 489999
Q ss_pred cCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 300 THQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|+. .+...+|+|..+.+|+|....
T Consensus 133 ~h~~-~~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 133 LHRR-SVHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred ECch-hhHHHHHHHhccCCcEEEEEc
Confidence 9994 555678999999999997663
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.37 E-value=2.4e-12 Score=115.54 Aligned_cols=68 Identities=26% Similarity=0.396 Sum_probs=53.3
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 224 PSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 224 ~~~LSGGqrQRvaIArAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
...+|.|+||.+.|+.+|... .+. .++++|||-++|+|..+..+.+.|.++.+.+ .-+|++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~-----~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~----------~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSA-----KKNGSILLIDEPENHLHPSWQRKLIELLKELSKKN----------IQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTT-----TTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGS----------SEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCc-----CCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccC----------CEEEEeCcc
Confidence 467799999999999988863 233 8999999999999999999999998876633 479999999
Q ss_pred HHHH
Q 018638 303 HSTI 306 (352)
Q Consensus 303 l~~i 306 (352)
+..+
T Consensus 299 p~il 302 (303)
T PF13304_consen 299 PFIL 302 (303)
T ss_dssp GGG-
T ss_pred chhc
Confidence 8654
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.36 E-value=2.1e-12 Score=140.81 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=68.1
Q ss_pred ccCCCCCChHHHHHH------HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 221 DRLPSELSGGMKKRV------ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 221 ~~~~~~LSGGqrQRv------aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
++++..|||||+|++ +||++++. +|+++|+||||++||+..+..+.++|..+...+ .
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~-------~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~----------~ 845 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAG-------NIPLLILDEPTPFLDEERRRKLVDIMERYLRKI----------P 845 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcC-------CCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcC----------C
Confidence 457789999999955 55556664 699999999999999999999999999987655 4
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
+||+|||+.+. ..+||++++|+.
T Consensus 846 ~iiiith~~~~-~~~~d~~~~l~~ 868 (880)
T PRK03918 846 QVIIVSHDEEL-KDAADYVIRVSL 868 (880)
T ss_pred EEEEEECCHHH-HHhCCeEEEEEe
Confidence 89999999975 568999999983
No 441
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.35 E-value=5.4e-12 Score=113.21 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=69.9
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
+..+..+..|-||-=---+.+.+- .--++|||||-++|.|.-+.+++..|+++.+.| .-+||
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~--------~~GiYiLDEPEa~LSp~RQlella~l~~la~sG----------aQ~Ii 183 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFN--------GQGIYILDEPEAALSPSRQLELLAILRDLADSG----------AQIII 183 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhc--------cCceEEecCccccCCHHHHHHHHHHHHHHHhcC----------CeEEE
Confidence 445667789999988888888885 478999999999999999999999999999887 47999
Q ss_pred EcCCHHHHHhhcCEEEEEeCCeE
Q 018638 299 VTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+||.+=.+.-=--+|+-++.+-+
T Consensus 184 ATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 184 ATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred EecChhheeCCCcEEEEEecCCc
Confidence 99998665433456777776654
No 442
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.34 E-value=1.5e-11 Score=133.50 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHHh--------------ccC-CCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHc
Q 018638 219 VEDRLPSELSGGMKKRVALARSII--------------FDN-TKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~--------------~~~-~~~a~~p~llLLDEPtsgL-D~~~~~~l~~ll~~l~~~ 282 (352)
+.+.....||+|+.|.+.|...+- +.- ..-..+|+++++|||+.+| |+..+..+.+.++.+++.
T Consensus 605 lfd~~~d~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~ 684 (818)
T PRK13830 605 LLDAEEDGLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA 684 (818)
T ss_pred ecCCCccccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc
Confidence 345555678887656554443320 000 0002479999999999999 799999999999999887
Q ss_pred CCCCCCCCCCceEEEEEcCCHHHHH---------hhcCEEEEEeCCeEEEeec
Q 018638 283 GENGLANPGNIASYVVVTHQHSTIR---------RAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 283 g~~~~~~~~~~~tvIivTHdl~~i~---------~~aDrv~vL~~G~iv~~g~ 326 (352)
| .++|++||+++.+. ..|+++++|.+|++...+.
T Consensus 685 ~----------~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 685 N----------CAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred C----------CEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 6 48999999999886 5799999999999877663
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.34 E-value=4.3e-12 Score=127.83 Aligned_cols=175 Identities=21% Similarity=0.213 Sum_probs=120.8
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.++.+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|++
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer--------------- 193 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER--------------- 193 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---------------
Confidence 366777888785 45688885 9999999999999999999999999999999998877766642
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
..+|.|.+...+.. -++.. ..=...++.|.|+|+|++.+.+.+...--+
T Consensus 194 -----------g~ev~e~~~~~l~~-------------------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 194 -----------GREVKDFIRKELGE-------------------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cccHHHHHHHHhhh-------------------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 13566655432110 01110 112456789999999999988876100000
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
..++-+|++|+||...|+. +++-.++.+.-..| .+..+.||-.. +++|.-...+|.|....+.
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G----------~~~~~~s~l~~----L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG----------KTLLMESYMKK----LLERSGKTQKGSITGIYTV 306 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC----------eeeeeeccchh----HHHHhccCCCcceEEEEEE
Confidence 1368999999999999985 55555555543333 47777788433 3344445689999887754
No 444
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.32 E-value=5.5e-12 Score=140.11 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=75.7
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~-~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
.++.+.+|||||+++++||+||+.-. .-...+|++||+||||++||+.+...+++.|..+++.| .||+|
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g----------~~v~i 1012 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG----------KTIGV 1012 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC----------CEEEE
Confidence 45889999999999999999998300 00002599999999999999999999999999998776 59999
Q ss_pred EcCCHHHHHhhcCEEEEEeC
Q 018638 299 VTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~~ 318 (352)
|||..+...++..+|.|-..
T Consensus 1013 isH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1013 ISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred EecHHHHHHhccceEEEEEC
Confidence 99999999999888888865
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=135.17 Aligned_cols=80 Identities=29% Similarity=0.359 Sum_probs=67.4
Q ss_pred cCCCCCChHHHHHHHH------HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCce
Q 018638 222 RLPSELSGGMKKRVAL------ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIA 294 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaI------ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~ 294 (352)
..+..||||||+|++| ||+|+. +|++++|||||++||+.....+.++|...... +. ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~-------~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~--------~~ 861 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNN-------DKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSD--------IP 861 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhcc-------CCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--------CC
Confidence 4688999999999976 488875 69999999999999999999999999865433 21 03
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEe
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
++|+||||++.+ .+||+++.+.
T Consensus 862 ~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 862 QVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred eEEEEECchHHH-HhcCeEEEEE
Confidence 899999999977 5899999997
No 446
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=1.1e-11 Score=140.60 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=64.2
Q ss_pred cCCCCCChHHHH------HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCCCCCCC
Q 018638 222 RLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-----KGENGLANP 290 (352)
Q Consensus 222 ~~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-----~g~~~~~~~ 290 (352)
..++.||||||| |++|||||+. +|++|+|||||++||+.+...+.+.|..+.. .|
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~-------~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~------- 1260 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCL-------NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN------- 1260 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhc-------CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC-------
Confidence 355789999999 9999999996 6999999999999999999999999988742 13
Q ss_pred CCceEEEEEcCCHHHHHhhc
Q 018638 291 GNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 291 ~~~~tvIivTHdl~~i~~~a 310 (352)
.+||+||||++++..+|
T Consensus 1261 ---~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1261 ---FQLLVITHDEDFVELLG 1277 (1311)
T ss_pred ---CeEEEEecCHHHHHHHh
Confidence 58999999999999886
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.26 E-value=8.3e-12 Score=121.10 Aligned_cols=143 Identities=18% Similarity=0.305 Sum_probs=96.0
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC-CCCCCHHHHH
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVRENV 188 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l-~~~lTV~eni 188 (352)
+++.++.|+.++|+||+|||||||+++|+++++|+.|.|.+... ..+.... ...+.++.+...- ....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~--~El~~~~---~~~~~l~~~~~~~~~~~~~~~--- 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT--REIFLPH---PNYVHLFYSKGGQGLAKVTPK--- 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc--cccCCCC---CCEEEEEecCCCCCcCccCHH---
Confidence 56788899999999999999999999999999999998888532 1111000 1123333221100 0001111
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
-.++.+|- ++|+++++|||.+
T Consensus 209 ----------------------------------------------~~l~~~Lr-------~~pd~ii~gE~r~------ 229 (308)
T TIGR02788 209 ----------------------------------------------DLLQSCLR-------MRPDRIILGELRG------ 229 (308)
T ss_pred ----------------------------------------------HHHHHHhc-------CCCCeEEEeccCC------
Confidence 12333454 3699999999996
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccccc
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~~ 331 (352)
.+++++++.+. .|. .+++.++|..+.. ...||++.|..|++...|.+.+..
T Consensus 230 -~e~~~~l~a~~-~g~---------~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 230 -DEAFDFIRAVN-TGH---------PGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -HHHHHHHHHHh-cCC---------CeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 34566777665 342 3679999999954 457999999999998888777654
No 448
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.26 E-value=2e-12 Score=130.75 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=55.8
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
.+|++|||+|++||+++|+|||||||||||+ +|+..|++| +|.++|+++... ........+ +|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~-~~~ai~~LR--~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP-NKNAMETLD--EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC-CHHHHHHHH--HHHHhh
Confidence 5899999999999999999999999999999 788899988 799999998653 233333223 888865
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.26 E-value=7.8e-12 Score=138.84 Aligned_cols=84 Identities=26% Similarity=0.312 Sum_probs=69.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Q 018638 219 VEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV 298 (352)
Q Consensus 219 ~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi 298 (352)
..+..+..||||||||++||++|+.- ...+|+++||||||++||+.....+.++|.++.+. .+|||
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-----------~~~i~ 1147 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIF---KVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-----------TQFIV 1147 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHH---ccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-----------CEEEE
Confidence 34567899999999999999998410 00257999999999999999999999999998654 38999
Q ss_pred EcCCHHHHHhhcCEEEEEe
Q 018638 299 VTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 299 vTHdl~~i~~~aDrv~vL~ 317 (352)
|||+++.+ .+||+++.+.
T Consensus 1148 ~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168 1148 ITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred EEcChhHH-HHhhhHeeee
Confidence 99999986 5699987654
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.24 E-value=2.5e-11 Score=103.81 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=77.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
++.|.||||+|||||++.+++...+..|.|.+... +.... ...++... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~---------------------e~~~~---~~~~~~~~-------~ 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI---------------------EEEIE---ELTERLIG-------E 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC---------------------CcchH---HHHHHHhh-------h
Confidence 47899999999999999999988775555554332 21100 01111100 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC----------CCCHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA----------GLDPIA 268 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts----------gLD~~~ 268 (352)
.. ... .+...+........+.++.++++.+++... +|+++++||+++ +.|...
T Consensus 50 ~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lviDe~~~~~~~~~~~~~~~~~~~ 112 (165)
T cd01120 50 SL-------KGA---LDNLIIVFATADDPAAARLLSKAERLRERG-------GDDLIILDELTRLVRALREIREGYPGEL 112 (165)
T ss_pred hh-------ccc---cccEEEEEcCCCCCcHHHHHHHHHHHHhCC-------CCEEEEEEcHHHHHHHHHHHHhcCChHH
Confidence 00 000 001112222333445555667777777764 699999999995 445555
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
...+.+++..+.+.+ .|+|+++|......
T Consensus 113 ~~~l~~l~~~~~~~~----------~~vv~~~~~~~~~~ 141 (165)
T cd01120 113 DEELRELLERARKGG----------VTVIFTLQVPSGDK 141 (165)
T ss_pred HHHHHHHHHHHhcCC----------ceEEEEEecCCccc
Confidence 566666665554444 69999999876543
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.16 E-value=5.8e-11 Score=132.25 Aligned_cols=83 Identities=25% Similarity=0.257 Sum_probs=69.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEc
Q 018638 221 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVT 300 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivT 300 (352)
.+.+..||||||++++||++|+.. ...+|+++|||||+++||+..+..+.++|.++... ..+|+||
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~---~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-----------~~~i~~t 1134 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQ---RYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-----------AQFIVVS 1134 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHH---hcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-----------CeEEEEE
Confidence 345679999999999999999731 01257999999999999999999999999998654 3799999
Q ss_pred CCHHHHHhhcCEEEEEeC
Q 018638 301 HQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 301 Hdl~~i~~~aDrv~vL~~ 318 (352)
|+...+ .+||+++.+..
T Consensus 1135 ~~~~~~-~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1135 LRSPMI-EYADRAIGVTM 1151 (1164)
T ss_pred CcHHHH-HhcceeEeEEE
Confidence 998765 78999988764
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=99.11 E-value=1.8e-10 Score=125.95 Aligned_cols=85 Identities=32% Similarity=0.433 Sum_probs=68.8
Q ss_pred CCCCCChHHHH------HHHHHHHHhccCCCCCCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE
Q 018638 223 LPSELSGGMKK------RVALARSIIFDNTKESVEP-EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIAS 295 (352)
Q Consensus 223 ~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p-~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t 295 (352)
.+..||||||| |++||++++.... ...| +++|+||||++||+.....+.++|..+...|. .+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~--~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~---------~q 846 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIE--GDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGV---------EQ 846 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhccc--CCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCC---------Ce
Confidence 46799999999 9999999874100 0012 67999999999999999999999999876541 37
Q ss_pred EEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 296 YVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 296 vIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+||||.+.+. .||++++|.+.
T Consensus 847 viiish~~~~~~-~ad~~~~~~~~ 869 (880)
T PRK02224 847 IVVVSHDDELVG-AADDLVRVEKD 869 (880)
T ss_pred EEEEECChHHHH-hcCeeEEeecC
Confidence 999999999985 68999999654
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.05 E-value=1.5e-09 Score=100.70 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 225 SELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG---LDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg---LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
...|.++++.+..++.++.. .+|+++++||||+. .|......+++.++.+++++ .|+++++|
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~-----~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g----------~tvllt~~ 163 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKS-----KREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLG----------KTILITLH 163 (234)
T ss_pred ccCcchHHHHHHHHHHHHHh-----cCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCC----------CEEEEEec
Confidence 34567889999999999862 47999999999964 44555555555566666665 58999999
Q ss_pred CHHH-------HHhhcCEEEEEeC
Q 018638 302 QHST-------IRRAVDRLIFLYE 318 (352)
Q Consensus 302 dl~~-------i~~~aDrv~vL~~ 318 (352)
+... +..++|-++.|+.
T Consensus 164 ~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 164 PYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCcCCHHHHHHHHhheEEEEEEEe
Confidence 7654 5667787777763
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.04 E-value=5.1e-10 Score=114.43 Aligned_cols=144 Identities=15% Similarity=0.254 Sum_probs=91.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
++++.++.+++|+++++|||||+||||++..|++.+.+..|. .+|++|.+|+ | ..++.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------------~kV~LI~~Dt--~-RigA~ 302 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------------SKVALLTTDS--Y-RIGGH 302 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------------CeEEEEeCCc--c-chhHH
Confidence 566777888899999999999999999999999877655442 1488999887 3 36899
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHH-HHHHHHHHhccCCCCCCCC--cEEEEeCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEP--EVLLYDEPTA 262 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQ-RvaIArAL~~~~~~~a~~p--~llLLDEPts 262 (352)
|++.+....+. .+.....+..+......++.+.....+.+...+++- .+.-+.+++.+. ..| .+|+||.++.
T Consensus 303 EQLr~~AeilG-Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~----~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 303 EQLRIYGKILG-VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA----GAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHHHhC-CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhcc----CCCCeeEEEEeCCCc
Confidence 99988654332 222111222334455567766656667775444432 223444444320 012 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHc
Q 018638 263 GLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~ 282 (352)
+ ..+.+.++.+...
T Consensus 378 ~------~~l~~i~~~f~~~ 391 (484)
T PRK06995 378 G------DTLNEVVQAYRGP 391 (484)
T ss_pred H------HHHHHHHHHhccC
Confidence 7 3344445554433
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.98 E-value=2e-11 Score=125.41 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=105.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHH--HcCCCCCceEEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCCHHHHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKII--AGLLAPDKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l--~Gl~~p~~G~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
=+++|..+.|.|++|||||||..-+ .|+.++.+.-+++..+. ...... ...+||-+++..-- +++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-----~~~~l~~~~~~~G~~~~~~~~~------g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-----SPQDIIKNARSFGWDLQKLVDE------GKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CHHHHHHHHHHcCCCHHHHhhc------Cce
Confidence 4789999999999999999999866 57666566667776543 122221 11356555432100 011
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH--HHHhccCCCCCCCCcEEEEeCCCCCCCH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA--RSIIFDNTKESVEPEVLLYDEPTAGLDP 266 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA--rAL~~~~~~~a~~p~llLLDEPtsgLD~ 266 (352)
.+ .. ..... ....+++.+++++..++.+.++|+|++|||.|+ .+|.. .|+.+ .
T Consensus 86 ~~-~~----~~~~~---~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~-------~~~~~----------~ 140 (484)
T TIGR02655 86 FI-LD----ASPDP---EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ-------QYDAV----------S 140 (484)
T ss_pred EE-Ee----cCchh---ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh-------hcCch----------H
Confidence 11 00 00000 011245566777788888999999999999999 55543 23333 5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH---------HHhhcCEEEEEe
Q 018638 267 IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST---------IRRAVDRLIFLY 317 (352)
Q Consensus 267 ~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~---------i~~~aDrv~vL~ 317 (352)
..++.+.++++.+++.| +|+|+++|+.+. ...+||.|+.|+
T Consensus 141 ~~r~~l~~Li~~L~~~g----------~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQIG----------VTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHCC----------CEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 67888999999998776 699999999764 266889999987
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.97 E-value=8.6e-10 Score=99.21 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=61.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC--CCCCCCCH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA--ALFDSLTV 184 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~--~l~~~lTV 184 (352)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... . .+..+++++|.. ..++..++
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--P---HPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--C---CCCEEEEEEecCCCCCCCccCH
Confidence 3445677899999999999999999999999999999999999977432211 1 122466766654 34566788
Q ss_pred HHHHHhhhh
Q 018638 185 RENVGFLLY 193 (352)
Q Consensus 185 ~eni~~~~~ 193 (352)
.+.+...+.
T Consensus 90 ~~~l~~~lR 98 (186)
T cd01130 90 ADLLRSALR 98 (186)
T ss_pred HHHHHHHhc
Confidence 888877553
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.97 E-value=1.2e-09 Score=110.49 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=68.3
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC---EeCCCCCChh--h
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG---RKRAGLISDE--E 163 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G---~~~~~~~~~~--~ 163 (352)
..++.+++++.|. +..+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|.+.| +++....... .
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 3589999999995 567999996 9999999999999999999999999999999999998865 4443221111 1
Q ss_pred hccceEEEEecCC
Q 018638 164 ISGLRIGLVFQSA 176 (352)
Q Consensus 164 ~~~~~ig~v~Q~~ 176 (352)
..++.|+||+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 1234699999964
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.95 E-value=5.4e-09 Score=106.05 Aligned_cols=189 Identities=18% Similarity=0.204 Sum_probs=115.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh-h-hc---cceEEEEecCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-E-IS---GLRIGLVFQSAA 177 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~-~-~~---~~~ig~v~Q~~~ 177 (352)
+..+++++ |.|.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|++-....... . .. ..+..+|.....
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 46789999 999999999999999999999999999999999998877666432111000 0 00 012223332211
Q ss_pred CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 178 LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 178 l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
.++.+-..-+.. --.+.|.+...|-+-++ ...+|+- .|+|+=. ==+.+
T Consensus 229 ----~~p~~r~~~~~~----------a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~RE---------isl~~ 276 (440)
T TIGR01026 229 ----QSPLLRLKGAYV----------ATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQRE---------IGLAA 276 (440)
T ss_pred ----CCHHHHHHHHHH----------HHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHHH---------HHHhc
Confidence 122222211110 00122333333433211 2344442 4444410 01566
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 258 DEP--TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 258 DEP--tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.|| +.|+||.....+.+++.+....++-.++-. -||++.+||+. ..++|++..+.+|+|+.+....+
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i---~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAF---YTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEE---EEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 786 449999999999999999865431111111 16788899984 56889999999999999886655
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=6.2e-08 Score=79.24 Aligned_cols=100 Identities=30% Similarity=0.433 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~ 194 (352)
.+..+.|+||+|+||||+++.|+..+.... +-++++....... +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE------------------------VLDQLL------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc------------------------CHHHHH------
Confidence 367899999999999999999999987665 4555555432110 000000
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 018638 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (352)
Q Consensus 195 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ 274 (352)
............+++..+..++++--. +|.++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKL-------KPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHh
Confidence 111222344677888888888888764 479999999999999988776654
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=1.5e-09 Score=109.66 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=67.0
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE---ECCEeCCCCCCh----hhhccceEEEEecC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY---IRGRKRAGLISD----EEISGLRIGLVFQS 175 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~---i~G~~~~~~~~~----~~~~~~~ig~v~Q~ 175 (352)
+..+++++ |+|.+|++++|+|+||+|||||+++|+|+.+|+.+.+- .+|+++...... ....+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 99999999999999999999999999999999864333 333333211101 11122359999999
Q ss_pred CCCCCCCCHHHHHHhhh
Q 018638 176 AALFDSLTVRENVGFLL 192 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~ 192 (352)
...+..+++.+++.+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 98888899999986644
No 461
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.91 E-value=1.9e-09 Score=109.19 Aligned_cols=175 Identities=21% Similarity=0.289 Sum_probs=109.2
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECC---EeCCCCCChhhh-ccceEEEE-----e
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG---RKRAGLISDEEI-SGLRIGLV-----F 173 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G---~~~~~~~~~~~~-~~~~ig~v-----~ 173 (352)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.| +++......... ...+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 99999999999999999999999999999854 557777745 443222111111 12245666 9
Q ss_pred cCCC--CCCCCCHHHHHHhhhhhcCC--CCHHHHHHHHHHHHHHcCCC-----cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 174 QSAA--LFDSLTVRENVGFLLYENSK--MRDEQISELVKENLAAVGLK-----GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 174 Q~~~--l~~~lTV~eni~~~~~~~~~--~~~~~~~~~v~~~l~~~gL~-----~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
|+|. +.+.+ +...++..+..+.. ....+...++.++++.++|. .....+|+.||. +++-+=+
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~llER- 301 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLLER- 301 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHHHH-
Confidence 9873 44444 55555554432221 12244567788999999993 467788888882 5554421
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
|. +. .+|. ++-. -||++..+|++.. ++|.+.-+-||.|+-+
T Consensus 302 ----ag-~~---------------------------~~GS--ITai---~tVl~~gdD~~dp--i~d~~~~i~dg~ivLs 342 (442)
T PRK06315 302 ----SG-AS---------------------------DKGT--ITAF---YTVLVAGDDMNEP--VADEVKSILDGHIVLS 342 (442)
T ss_pred ----hc-CC---------------------------CCcc--eeee---EEEEecCCCCCcc--cHHHhhhhcceEEEEe
Confidence 11 10 0110 1100 2667777777653 5677777788888776
Q ss_pred ecc
Q 018638 325 GMT 327 (352)
Q Consensus 325 g~~ 327 (352)
-..
T Consensus 343 r~l 345 (442)
T PRK06315 343 NAL 345 (442)
T ss_pred ccH
Confidence 533
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.91 E-value=2.6e-08 Score=108.86 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=47.9
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGL-DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgL-D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
|++++. .+|+++++|||+.+| |+..+..+.+.++.+++.| .+++++||+++.+..
T Consensus 680 i~~~l~-------~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g----------~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALK-------GQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKAN----------CLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhc-------CCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHhh
Confidence 456654 379999999999999 7999999999999998876 489999999999875
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.91 E-value=6.1e-09 Score=94.77 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRG 152 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G 152 (352)
++.|+||+||||||+++.|++.+.+ ..|.|....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 6899999999999999999888764 356666544
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.87 E-value=6.2e-10 Score=102.74 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCceEEEECCE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGR 153 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~~p~~G~I~i~G~ 153 (352)
=+++|+++.|.||+|||||||...++ ....+..+-+++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 47899999999999999999988654 223455566777654
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.85 E-value=9.7e-09 Score=95.79 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC-EeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG-RKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G-~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~ 195 (352)
|.+..|+||.|+|||||+-.++=- ..+|.=++++ .... ...++-|+.=+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~~--------~~~~Vlyi~~E-------------------- 50 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKVT--------EPGRVVYLSAE-------------------- 50 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCccccC--------CCceEEEEECC--------------------
Confidence 678899999999999998887632 1223211111 1000 01123343311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH----------------HHhccCCCCCCCCcEEEEeC
Q 018638 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR----------------SIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 196 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr----------------AL~~~~~~~a~~p~llLLDE 259 (352)
.+..++.+++..+...+++.+..++.... +|+.|++.+++ +.. .+|+++|+|
T Consensus 51 --d~~~~i~~Rl~~i~~~~~~~~~~~rl~~~--~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-------~~~~lvviD- 118 (239)
T cd01125 51 --DPREEIHRRLEAILQHLEPDDAGDRLFID--SGRIQPISIAREGRIIVVPEFERIIEQLLI-------RRIDLVVID- 118 (239)
T ss_pred --CCHHHHHHHHHHHHhhcCCcCcccceEEe--ccCCCceecccCCcccccHHHHHHHHHHHh-------cCCCEEEEC-
Confidence 11222333444455555444333333222 45556555443 222 379999999
Q ss_pred CCCC------CCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 260 PTAG------LDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 260 Ptsg------LD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
|+++ +|+.....+++.|.+++++ | ++||+++|...
T Consensus 119 pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g----------~avl~v~H~~K 160 (239)
T cd01125 119 PLVSFHGVSENDNGAMDAVIKALRRIAAQTG----------AAILLVHHVRK 160 (239)
T ss_pred ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC----------CEEEEEeccCc
Confidence 7764 7999999999999998765 4 69999999864
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.84 E-value=2.7e-09 Score=96.36 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
++||+||||||||||.++|++++ ..|.+.+.+.| .... .++..+........+. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D---------------------~~~~-~~~~~~~~~~~~~~~~-~ 55 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD---------------------SYYK-DLSHEELEERKNNNYD-H 55 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec---------------------cccc-ccccccHHHhccCCCC-C
Confidence 58999999999999999999998 33444443333 1111 1111111111000000 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
......+...+.+..+...+..+.+..++|.|++++..+ .+. +++++|+|+|+.+.++.
T Consensus 56 ~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~-------~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 56 PDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVY-------PADVIILEGILALYDKE 114 (198)
T ss_pred CCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecC-------CCCEEEEechhhccchh
Confidence 000011223455666666666777888999999887655 343 58999999999999873
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.83 E-value=6.8e-08 Score=105.04 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHh
Q 018638 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRR 308 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD-~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~ 308 (352)
.+|.++++|||...|| +.....+.+.++.+++.| ..++++||+++.+..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLN----------TFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHh
Confidence 4799999999999999 889999999999998776 489999999987654
No 468
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=1.3e-08 Score=101.05 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=56.4
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
..+|.||||+++||.+|+.-. .+...+|+|||||||+++||+..+..+++.|.+. | ..|+++||+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~----------~qv~it~~~ 340 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---G----------VQVFVTAIS 340 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---C----------CEEEEEecC
Confidence 489999999999999998500 0000149999999999999999999999998754 3 479999999
Q ss_pred HHHHH
Q 018638 303 HSTIR 307 (352)
Q Consensus 303 l~~i~ 307 (352)
++.+.
T Consensus 341 ~~~~~ 345 (365)
T TIGR00611 341 LDHLK 345 (365)
T ss_pred hhhcc
Confidence 87654
No 469
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.76 E-value=4.8e-09 Score=93.93 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.. .....+...|+.+|+...++..++..|+.+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~---~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP---AKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC---HhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 5999999999999999999999999987 5889887642 11112223577777765556667777776643
No 470
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.4e-08 Score=109.86 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=70.3
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVE--PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~--p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
+.+.+|||||+=.++||.+|+-.... +.+ -++++|||||..||+.....+.+.|..+...+ .+|+||
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~-~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~----------~qiiII 879 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLL-QGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG----------RQIIII 879 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHH-hcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcC----------CeEEEE
Confidence 67899999999999888887542111 123 58999999999999999999999999998876 489999
Q ss_pred cCCHHHHHhhcCEEEEEeCC
Q 018638 300 THQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G 319 (352)
||+-++.. .+|.++.++..
T Consensus 880 SH~eel~e-~~~~~i~V~k~ 898 (908)
T COG0419 880 SHVEELKE-RADVRIRVKKD 898 (908)
T ss_pred eChHHHHH-hCCeEEEEEec
Confidence 99988765 46888887653
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.68 E-value=3.3e-08 Score=97.68 Aligned_cols=84 Identities=25% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHhccC--CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 225 SELSGGMKKRVALARSIIFDN--TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 225 ~~LSGGqrQRvaIArAL~~~~--~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
.-+|+|||++++||+.|+.-. .+...+|+++|||||+++||+..+..+.+.|.... + ++|..|+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~-q------------~~it~t~~ 328 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP-Q------------AIVAGTEA 328 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC-c------------EEEEcCCC
Confidence 478999999999999997100 00002699999999999999999999988886432 1 45555543
Q ss_pred HHHHHhhcCEEEEEeCCeEEEee
Q 018638 303 HSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 303 l~~i~~~aDrv~vL~~G~iv~~g 325 (352)
...+|+++.+.+|++.-+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 329 ----PPGAALTLRIEAGVFTPEA 347 (349)
T ss_pred ----CCCCceEEEEeccEecCCC
Confidence 3468999999999875443
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.67 E-value=8.2e-08 Score=108.19 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRG 152 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G 152 (352)
+++...++++++|+|++|+|||||++.+++.+ ....|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 56778899999999999999999999996554 45689998875
No 473
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.66 E-value=1.9e-07 Score=102.12 Aligned_cols=140 Identities=22% Similarity=0.305 Sum_probs=88.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+-+|++|. ..+.++.|.|||.+||||+||.++-.. -..-| .|||-... .+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------------~~VPa~~a---~i 647 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------------SFVPAESA---RI 647 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------------Cceeccce---Ee
Confidence 3466888888 778899999999999999999987542 11112 12222110 01
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC--
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP-- 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP-- 260 (352)
++.+.| | .++|- .+.....+|-=+.....++++|-. |.++.++|+|||
T Consensus 648 ~~~d~I-~---------------------triga---~d~i~~g~STF~~E~~~~~~il~~-----at~~sLvllDE~Gr 697 (854)
T PRK05399 648 GIVDRI-F---------------------TRIGA---SDDLASGRSTFMVEMTETANILNN-----ATERSLVLLDEIGR 697 (854)
T ss_pred cccCee-e---------------------eccCc---ccccccCcccHHHHHHHHHHHHHh-----CCCCcEEEEecCCC
Confidence 111222 1 01111 122334567777777788887764 457999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 261 -TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 261 -tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
|+.+|..+ ..+.++..+.+.++ .++|++||+.+ +..++++
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~---------~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIG---------AKTLFATHYHE-LTELEEK 738 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCC---------ceEEEEechHH-HHHHhhh
Confidence 99999443 45677777776531 58999999955 4456665
No 474
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.61 E-value=6e-08 Score=110.53 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred cccCCCCCChHHHHHHH----HHHHHhccC-CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 220 EDRLPSELSGGMKKRVA----LARSIIFDN-TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRva----IArAL~~~~-~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
.++..+.||||||||++ +|++++.=. .--..+|+++||||||++||+.....++++|.++ + .
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~----------~ 1307 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---D----------L 1307 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---C----------C
Confidence 34456899999999997 575532000 0012479999999999999999999999999887 3 4
Q ss_pred EEEEEcCCH
Q 018638 295 SYVVVTHQH 303 (352)
Q Consensus 295 tvIivTHdl 303 (352)
++||+||++
T Consensus 1308 ~~i~~s~~~ 1316 (1353)
T TIGR02680 1308 DFVMTSERE 1316 (1353)
T ss_pred CEEEEccch
Confidence 799999975
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=98.60 E-value=6e-08 Score=97.93 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=60.0
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCChhh--hccceEEEEecCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISDEE--ISGLRIGLVFQSA 176 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~~~--~~~~~ig~v~Q~~ 176 (352)
.+..+++++ +++.+||+++|+|+||+|||||+++|+++..++. |.|.++|+++........ ....++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456799999 9999999999999999999999999999999987 999999987654321111 1124689998865
Q ss_pred C
Q 018638 177 A 177 (352)
Q Consensus 177 ~ 177 (352)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
No 476
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.59 E-value=1.4e-08 Score=92.70 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999876
No 477
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.56 E-value=2.1e-07 Score=79.32 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=77.4
Q ss_pred EEEEcCCCchHHHHHHHHH--cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecC-CCCCC----------------
Q 018638 120 VGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQS-AALFD---------------- 180 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~--Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~-~~l~~---------------- 180 (352)
++|+|++|||||||++.|+ +..++.+|++...- ..... .. .-.+++-+ |.+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-~~~~~----~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-LINFF----NV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-eEEEE----Ec---cCeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 6899999999999999999 77777777643211 10000 00 00111111 11100
Q ss_pred -CCCHHHHHHhhhhhc-CCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEE
Q 018638 181 -SLTVRENVGFLLYEN-SKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 181 -~lTV~eni~~~~~~~-~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLL 257 (352)
.++..+|+...+... ...........+.+++..++.. -....+...++++++++........... ....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-- 149 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--FEIDPPII-- 149 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--ccCCCceE--
Confidence 011222222111100 0011112233455667766643 2234456778999988876655422100 00245665
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH
Q 018638 258 DEPTAGLDPIASTVVEDLIRSV 279 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l 279 (352)
|++++|.....++++.|.++
T Consensus 150 --~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 --LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred --EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999888764
No 478
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.54 E-value=5.7e-08 Score=100.15 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=58.7
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
+.|+++.||...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 458999999888999999999999999999999999999999999999999999999887653
No 479
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.54 E-value=9.1e-07 Score=96.44 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 250 VEPEVLLYDEPTAGLD-PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD-~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
.+|+++++|||+..|| +..+..+.+.++.+++.| .+++++||+++.+.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~----------~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKN----------VSVIFATQSLADID 682 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcC----------CEEEEEECCHHHHh
Confidence 4799999999999999 788999999999998776 48999999998654
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=98.53 E-value=1.8e-07 Score=92.73 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=60.9
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
++.+.-.+++|++++|+|+||+|||||++.|+|...|+.|+|.+++..... .....++.+++|+..+++ .....
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~-----tt~~~~l~~l~~~~~l~D-tpG~~ 258 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH-----TTTHRELHPLPSGGLLID-TPGMR 258 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-----hhhhccEEEecCCCeecC-CCchh
Confidence 555666778999999999999999999999999999999999998753211 112336899999988886 35666
Q ss_pred HHHh
Q 018638 187 NVGF 190 (352)
Q Consensus 187 ni~~ 190 (352)
++.+
T Consensus 259 ~~~l 262 (356)
T PRK01889 259 ELQL 262 (356)
T ss_pred hhcc
Confidence 6554
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.52 E-value=2.1e-07 Score=82.88 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCC-cccccCCCCCChHHHHHHH--HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 206 LVKENLAAVGLK-GVEDRLPSELSGGMKKRVA--LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 206 ~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRva--IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
.+.++++..++. -..-.++..+|+||+|++. +++.+-. .+++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------GDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh------cCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345666666664 3445577889999999987 6666532 123443 99999999999999999887654
No 482
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.51 E-value=9.4e-08 Score=96.69 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=57.1
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
.++.++++..| .+..+++++ |+|.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47788888888 467899999 9999999999999999999999999999999999988887764
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.50 E-value=2.9e-07 Score=81.65 Aligned_cols=66 Identities=33% Similarity=0.498 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE-----------CCEeCCCCCChhhhc----cceEEEEecCCCCCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI-----------RGRKRAGLISDEEIS----GLRIGLVFQSAALFDS 181 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i-----------~G~~~~~~~~~~~~~----~~~ig~v~Q~~~l~~~ 181 (352)
|++++|+||||||||||++.|++++.+. |.+.+ +|.+.... ....+. ...++.++|...++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIAL-STEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCcccccc-CHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65555 44433222 111211 2247888888776666
Q ss_pred CCH
Q 018638 182 LTV 184 (352)
Q Consensus 182 lTV 184 (352)
.++
T Consensus 79 ~~~ 81 (179)
T TIGR02322 79 IPA 81 (179)
T ss_pred ChH
Confidence 555
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.50 E-value=1.6e-07 Score=84.32 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
|++++|+||||||||||+++|+++..| .+.+.+..+....... ....+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAG--SENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchh--HHhheeEcHHHH
Confidence 789999999999999999999999876 5778777654321111 122578888874
No 485
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.49 E-value=1.6e-07 Score=95.12 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=63.1
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhh--ccceEEEEecCCCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEI--SGLRIGLVFQSAAL 178 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~--~~~~ig~v~Q~~~l 178 (352)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+.|++-...... ... .....+++++++..
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 46799999 99999999999999999999999999999999999998866543221100 000 01236788898877
Q ss_pred CCCCCHHHHHHh
Q 018638 179 FDSLTVRENVGF 190 (352)
Q Consensus 179 ~~~lTV~eni~~ 190 (352)
+|.++.. +..+
T Consensus 211 ~p~~~r~-~~~~ 221 (422)
T TIGR02546 211 RPSLERL-KAAY 221 (422)
T ss_pred CCHHHHH-HHHH
Confidence 7754433 4434
No 486
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=9.6e-08 Score=93.30 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=57.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCC----ChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLI----SDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~----~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|..... ...+..+..+.+++|.....|..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999999998899999887753210 0112233468999997665665566677654
No 487
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.47 E-value=5.1e-07 Score=95.50 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCce--------EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--------EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--------~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~en 187 (352)
..+.+.|+||||+|||||+++|.++.++..| -|.++|..+. . .. ....|
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~-d~---------------------~~i~~ 230 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-W-DP---------------------REVTN 230 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-C-CH---------------------HHHhH
Confidence 3457999999999999999999999866544 3555553321 0 00 00011
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
..++. . .+...+.+.+.++.+|+.+.....+.++||| +|+||| +..||+.
T Consensus 231 ~llg~-----~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG-----------------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 231 PLLGS-----V-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG-----------------------VLFIDE-IGELDPL 280 (615)
T ss_pred HhcCC-----c-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC-----------------------eEEEec-cccCCHH
Confidence 11211 1 1111223455688889988888888888888 499999 7999999
Q ss_pred HHHHHHHHHHH
Q 018638 268 ASTVVEDLIRS 278 (352)
Q Consensus 268 ~~~~l~~ll~~ 278 (352)
.+..+++.|.+
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99999888865
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.46 E-value=1.4e-07 Score=85.41 Aligned_cols=39 Identities=38% Similarity=0.613 Sum_probs=33.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC------------CCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~------------p~~G~I~i~G~~~ 155 (352)
++|++++|+||||||||||+++|++.++ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999985 67777 466654
No 489
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.45 E-value=6.4e-07 Score=88.32 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRG 152 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G 152 (352)
..++.++.|.||+||||||+++.+.+.+. +..|.|....
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 35688999999999999999999998765 4456666543
No 490
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.45 E-value=2.6e-07 Score=90.48 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=48.9
Q ss_pred EEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 98 YKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 98 s~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
+..|. +..+++++ |.+.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+-|++
T Consensus 50 ~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 50 DEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred eeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 33443 46799999 9999999999999999999999999999999999988876654
No 491
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=1.8e-07 Score=94.85 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=56.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc---eEEEECCEeCCCCCCh-hhhccceEEEEecCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK---GEVYIRGRKRAGLISD-EEISGLRIGLVFQSAA 177 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~---G~I~i~G~~~~~~~~~-~~~~~~~ig~v~Q~~~ 177 (352)
..+++.+ |+|.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|+++...... .....++.++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4466666 9999999999999999999999999999999986 9999999986432111 0111235899999864
No 492
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.38 E-value=2.7e-07 Score=89.03 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=51.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC--CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
.++||.||||||||||+++|.+++. |++|.|.+-+.|-... ...... +.+++ |...+.+.+++.+.+.+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~-~~~~l~--~~g~~-~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH-PNQVLK--ERNLM-KKKGFPESYDMHRLVKFL 134 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc-cHHHHH--HcCCc-cccCCChhccHHHHHHHH
Confidence 5999999999999999999999998 7889988866654322 122221 35554 666666677888777664
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.38 E-value=6.5e-07 Score=91.48 Aligned_cols=42 Identities=36% Similarity=0.501 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE-EEECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE-VYIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~-I~i~G~~ 154 (352)
=+.+|+++.|.|++|+|||||+..++.......+. +++.+++
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 58999999999999999999999998766554444 4556553
No 494
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.36 E-value=4.6e-07 Score=92.01 Aligned_cols=51 Identities=27% Similarity=0.524 Sum_probs=47.8
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 46689999 9999999999999999999999999999999999999988864
No 495
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=6.8e-07 Score=89.47 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=48.2
Q ss_pred eEEEEeEEEEeCC-eeeeE-----------eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 91 LIDCRNVYKSFGE-KHILR-----------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~-----------~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
-++++||++.|++ +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4999999999975 46897 99999999999999999999999999999997653
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.34 E-value=2.7e-07 Score=68.82 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.9
Q ss_pred eEeeeEEEeC-CcEEEEEcCCCchHHHHHHHHHcCCCCCc
Q 018638 107 LRGVSFKIRH-GEAVGIIGPSGTGKSTILKIIAGLLAPDK 145 (352)
Q Consensus 107 L~~vsl~i~~-Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~ 145 (352)
+++.++++.+ |+++.|.||||||||||+.+|.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 57999999999999999999987776654
No 497
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.32 E-value=6.5e-07 Score=83.11 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=47.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE----EEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE----VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~----I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
.+..++||.||||||||||++.|++++++++|. |.+++... ...... ..|++++... ++.+++.+.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~--~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLD--AHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHH--hcccccccCC-CCCCCHHHHHHH
Confidence 456799999999999999999999999999998 44444211 111111 3577766433 345667666554
No 498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.31 E-value=7.6e-07 Score=89.91 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=50.9
Q ss_pred EEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 94 CRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 94 ~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
-..++.-+. +..+++ .+|++.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+..
T Consensus 117 R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 117 RARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred ccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 334444443 456775 6999999999999999999999999999999999999999888753
No 499
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.31 E-value=9.2e-07 Score=89.26 Aligned_cols=57 Identities=30% Similarity=0.462 Sum_probs=50.4
Q ss_pred EEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 98 YKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 98 s~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+..| .+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|++.
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 3444 346799999 99999999999999999999999999999999999998888753
No 500
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.29 E-value=1.3e-06 Score=69.75 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=40.3
Q ss_pred cccCCCCCChHHHHH-HHHHHH--HhccCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 220 EDRLPSELSGGMKKR-VALARS--IIFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 220 ~~~~~~~LSGGqrQR-vaIArA--L~~~~~~---~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
..+....+||||||. +.+|.+ |..--.. ....|++++|||||++||+.....++++|++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 356778999999953 333333 2210011 1235899999999999999999999998864
Done!