Query 018638
Match_columns 352
No_of_seqs 366 out of 1201
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.4E-61 8.2E-66 474.4 31.1 240 87-344 20-266 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 5E-61 1.7E-65 471.4 30.4 236 90-343 3-240 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 1.1E-60 3.8E-65 472.1 32.0 231 91-343 3-235 (381)
4 2olj_A Amino acid ABC transpor 100.0 7.4E-60 2.5E-64 445.5 32.2 236 90-343 23-260 (263)
5 1b0u_A Histidine permease; ABC 100.0 7.1E-60 2.4E-64 445.1 30.6 236 90-342 5-253 (262)
6 3tif_A Uncharacterized ABC tra 100.0 1.3E-59 4.6E-64 436.4 29.3 223 91-331 1-233 (235)
7 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-60 2.8E-64 448.0 26.8 225 89-332 5-233 (275)
8 1z47_A CYSA, putative ABC-tran 100.0 2.5E-59 8.6E-64 459.0 30.7 234 88-343 11-247 (355)
9 2pcj_A ABC transporter, lipopr 100.0 4.3E-59 1.5E-63 429.9 29.8 218 90-326 3-222 (224)
10 2yyz_A Sugar ABC transporter, 100.0 3.5E-59 1.2E-63 458.7 30.5 231 91-343 3-235 (359)
11 4g1u_C Hemin import ATP-bindin 100.0 3E-59 1E-63 441.9 28.9 236 90-342 10-245 (266)
12 2it1_A 362AA long hypothetical 100.0 4.4E-59 1.5E-63 458.5 30.3 231 91-343 3-235 (362)
13 1g6h_A High-affinity branched- 100.0 1.5E-59 5.1E-64 441.3 25.8 223 89-329 5-239 (257)
14 1g29_1 MALK, maltose transport 100.0 7.7E-59 2.6E-63 458.4 31.3 235 91-343 3-241 (372)
15 1ji0_A ABC transporter; ATP bi 100.0 5E-59 1.7E-63 433.7 28.3 224 89-332 4-228 (240)
16 1v43_A Sugar-binding transport 100.0 7.9E-59 2.7E-63 458.2 30.2 231 91-343 11-243 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 6.4E-59 2.2E-63 456.1 28.2 235 91-343 3-242 (353)
18 3d31_A Sulfate/molybdate ABC t 100.0 1.9E-58 6.5E-63 451.9 29.0 227 91-343 1-229 (348)
19 1vpl_A ABC transporter, ATP-bi 100.0 2.9E-58 9.8E-63 433.1 28.8 221 90-331 14-234 (256)
20 2onk_A Molybdate/tungstate ABC 100.0 1.8E-57 6.3E-62 423.7 25.3 225 91-342 1-226 (240)
21 2ihy_A ABC transporter, ATP-bi 100.0 2.2E-57 7.7E-62 431.9 22.8 229 85-332 15-252 (279)
22 2yz2_A Putative ABC transporte 100.0 7.9E-57 2.7E-61 425.0 23.6 217 91-331 2-226 (266)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 9.5E-57 3.2E-61 420.7 23.2 220 91-328 3-229 (250)
24 2zu0_C Probable ATP-dependent 100.0 3.9E-56 1.3E-60 420.6 26.0 224 89-330 18-252 (267)
25 2nq2_C Hypothetical ABC transp 100.0 2.7E-55 9.2E-60 411.9 28.6 210 90-332 3-217 (253)
26 2ff7_A Alpha-hemolysin translo 100.0 1.5E-55 5.2E-60 412.1 24.7 214 91-333 7-233 (247)
27 2ixe_A Antigen peptide transpo 100.0 7.1E-56 2.4E-60 419.8 22.5 226 90-338 15-251 (271)
28 3nh6_A ATP-binding cassette SU 100.0 2E-55 6.8E-60 423.7 24.6 214 91-333 53-278 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 5.4E-55 1.9E-59 409.2 24.7 213 90-332 3-222 (249)
30 1mv5_A LMRA, multidrug resista 100.0 4.8E-55 1.6E-59 407.3 19.1 224 91-343 1-236 (243)
31 1sgw_A Putative ABC transporte 100.0 2.7E-54 9.3E-59 396.0 17.4 202 90-321 9-210 (214)
32 2ghi_A Transport protein; mult 100.0 1.2E-53 4.1E-58 402.1 21.6 219 90-338 16-248 (260)
33 2yl4_A ATP-binding cassette SU 100.0 1.4E-52 4.6E-57 436.0 30.8 278 6-332 278-570 (595)
34 3b5x_A Lipid A export ATP-bind 100.0 7.3E-53 2.5E-57 437.0 28.3 276 5-333 280-568 (582)
35 2pjz_A Hypothetical protein ST 100.0 1.7E-53 5.9E-58 402.0 20.6 207 91-331 1-214 (263)
36 3b60_A Lipid A export ATP-bind 100.0 7.8E-53 2.7E-57 436.8 25.9 275 5-332 280-567 (582)
37 4a82_A Cystic fibrosis transme 100.0 7.1E-53 2.4E-57 436.9 25.3 283 7-342 278-573 (578)
38 3gd7_A Fusion complex of cysti 100.0 7.5E-54 2.6E-58 425.0 16.7 223 90-343 18-254 (390)
39 2pze_A Cystic fibrosis transme 100.0 1.5E-52 5E-57 387.5 23.2 201 90-333 5-219 (229)
40 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-52 5.8E-57 434.9 23.8 271 11-333 284-567 (587)
41 3qf4_B Uncharacterized ABC tra 100.0 6.4E-53 2.2E-57 438.9 20.4 262 20-334 307-580 (598)
42 2cbz_A Multidrug resistance-as 100.0 5.1E-52 1.7E-56 385.9 19.6 207 91-337 3-222 (237)
43 4f4c_A Multidrug resistance pr 100.0 1.4E-50 4.8E-55 453.1 18.9 216 92-334 1077-1306(1321)
44 4f4c_A Multidrug resistance pr 100.0 6.1E-49 2.1E-53 439.9 25.9 276 8-334 354-643 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 3.6E-49 1.2E-53 377.5 18.0 197 90-332 39-247 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 7.4E-48 2.5E-52 430.2 26.0 215 91-334 387-615 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.1E-47 3.8E-52 428.8 22.4 219 91-336 1030-1262(1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-45 4.3E-50 379.9 21.0 207 88-332 284-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 2E-45 6.7E-50 383.1 22.3 207 88-332 354-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 4.1E-45 1.4E-49 376.0 22.0 207 88-330 266-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.6E-43 5.6E-48 368.5 19.8 213 95-344 350-571 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-44 1.5E-48 368.3 10.4 200 92-319 21-234 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 5.1E-44 1.7E-48 372.5 10.4 201 91-319 83-304 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 3.3E-42 1.1E-46 362.3 16.8 217 103-344 30-310 (670)
55 2iw3_A Elongation factor 3A; a 100.0 3.2E-42 1.1E-46 372.7 15.5 206 88-326 668-981 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.2E-40 3.9E-45 360.5 24.5 197 91-331 435-634 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-40 8.8E-45 347.9 18.8 216 104-342 335-650 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.7E-39 5.8E-44 338.3 11.4 201 96-322 82-300 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-39 1.6E-43 331.0 10.4 195 96-320 4-214 (538)
60 3pih_A Uvrabc system protein A 100.0 3.2E-36 1.1E-40 324.9 25.8 227 91-344 589-914 (916)
61 2vf7_A UVRA2, excinuclease ABC 100.0 5.1E-37 1.7E-41 328.7 18.7 231 89-342 500-837 (842)
62 2r6f_A Excinuclease ABC subuni 100.0 9.8E-37 3.3E-41 328.2 17.1 226 89-341 627-951 (972)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 7.1E-41 2.4E-45 338.5 -17.9 212 89-345 116-351 (460)
64 2ygr_A Uvrabc system protein A 100.0 4.1E-36 1.4E-40 324.3 16.6 228 90-344 646-972 (993)
65 4aby_A DNA repair protein RECN 100.0 8.4E-34 2.9E-38 280.5 20.5 199 105-325 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2E-30 6.9E-35 254.7 15.9 85 221-323 274-364 (365)
67 3b85_A Phosphate starvation-in 100.0 1.8E-34 6E-39 263.2 -15.6 160 99-321 8-172 (208)
68 1e69_A Chromosome segregation 100.0 1.5E-30 5E-35 250.9 9.8 205 92-321 6-301 (322)
69 4gp7_A Metallophosphoesterase; 100.0 2.1E-30 7.3E-35 227.8 5.6 150 109-312 1-167 (171)
70 1znw_A Guanylate kinase, GMP k 100.0 1.3E-32 4.5E-37 248.3 -15.1 178 104-317 9-202 (207)
71 1tq4_A IIGP1, interferon-induc 100.0 2.1E-31 7.3E-36 265.7 -10.1 187 104-320 36-255 (413)
72 3b9q_A Chloroplast SRP recepto 99.9 2.5E-30 8.6E-35 248.2 -3.8 187 98-321 81-284 (302)
73 1ye8_A Protein THEP1, hypothet 99.9 8.2E-29 2.8E-33 220.2 0.7 148 119-323 2-159 (178)
74 2v9p_A Replication protein E1; 99.9 2.8E-32 9.5E-37 262.2 -24.2 208 21-330 56-264 (305)
75 2dpy_A FLII, flagellum-specifi 99.9 1.4E-30 4.7E-35 261.8 -13.4 197 90-331 130-343 (438)
76 2og2_A Putative signal recogni 99.9 1.3E-28 4.3E-33 241.7 -2.1 177 108-321 148-341 (359)
77 1z6g_A Guanylate kinase; struc 99.9 1.1E-30 3.8E-35 238.5 -20.6 189 104-315 10-206 (218)
78 3sop_A Neuronal-specific septi 99.9 4.9E-28 1.7E-32 228.7 -5.9 149 119-305 4-152 (270)
79 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.2E-27 4.1E-32 232.1 -5.8 141 94-320 151-291 (330)
80 3aez_A Pantothenate kinase; tr 99.9 3.6E-29 1.2E-33 241.2 -16.7 180 91-320 43-246 (312)
81 2o5v_A DNA replication and rep 99.9 1.3E-24 4.3E-29 213.3 14.7 84 223-330 261-354 (359)
82 2o8b_B DNA mismatch repair pro 99.9 3.5E-26 1.2E-30 250.0 3.2 167 89-322 748-930 (1022)
83 2obl_A ESCN; ATPase, hydrolase 99.9 3.8E-27 1.3E-31 230.2 -5.3 195 90-330 44-253 (347)
84 1tf7_A KAIC; homohexamer, hexa 99.9 1.9E-28 6.6E-33 250.9 -15.9 182 90-318 11-209 (525)
85 3pih_A Uvrabc system protein A 99.9 4.7E-25 1.6E-29 238.1 8.9 177 132-346 383-575 (916)
86 1cr0_A DNA primase/helicase; R 99.9 1.3E-25 4.3E-30 212.7 2.8 184 104-321 22-237 (296)
87 2r6f_A Excinuclease ABC subuni 99.9 8.2E-24 2.8E-28 228.0 13.8 147 179-344 449-612 (972)
88 1tf7_A KAIC; homohexamer, hexa 99.9 4.1E-25 1.4E-29 226.2 3.1 172 91-320 257-444 (525)
89 3qkt_A DNA double-strand break 99.9 7.1E-23 2.4E-27 198.6 17.7 80 220-317 242-327 (339)
90 4ad8_A DNA repair protein RECN 99.9 1.6E-23 5.4E-28 214.0 12.4 79 223-320 393-474 (517)
91 2jeo_A Uridine-cytidine kinase 99.9 3.4E-25 1.2E-29 204.8 -2.6 170 101-320 9-180 (245)
92 2vf7_A UVRA2, excinuclease ABC 99.9 3.3E-23 1.1E-27 222.1 10.8 190 125-344 270-487 (842)
93 2ygr_A Uvrabc system protein A 99.9 1.3E-22 4.3E-27 219.4 14.8 147 179-344 466-629 (993)
94 2ehv_A Hypothetical protein PH 99.9 3.2E-24 1.1E-28 195.9 0.1 182 91-317 6-206 (251)
95 2qnr_A Septin-2, protein NEDD5 99.9 7.5E-25 2.6E-29 209.7 -8.5 164 95-304 2-168 (301)
96 4a74_A DNA repair and recombin 99.9 2.9E-23 9.8E-28 187.2 0.5 157 113-320 21-201 (231)
97 1w1w_A Structural maintenance 99.9 2.8E-21 9.5E-26 192.8 14.4 81 223-317 330-410 (430)
98 3thx_A DNA mismatch repair pro 99.9 8.1E-23 2.8E-27 221.4 3.5 166 91-330 631-811 (934)
99 2eyu_A Twitching motility prot 99.9 1.1E-23 3.9E-28 197.9 -3.6 140 92-317 6-146 (261)
100 3szr_A Interferon-induced GTP- 99.9 3.2E-24 1.1E-28 223.6 -8.4 194 90-329 9-234 (608)
101 1rj9_A FTSY, signal recognitio 99.9 1.7E-23 5.8E-28 200.9 -2.8 154 116-304 101-259 (304)
102 3asz_A Uridine kinase; cytidin 99.8 1.8E-24 6.1E-29 194.2 -10.4 146 114-304 3-162 (211)
103 1ewq_A DNA mismatch repair pro 99.8 2.3E-22 7.9E-27 214.1 3.9 145 91-310 550-704 (765)
104 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.3E-21 2.5E-25 164.5 10.7 84 220-321 51-142 (148)
105 3thx_B DNA mismatch repair pro 99.8 2.2E-21 7.6E-26 209.7 6.4 155 91-312 640-804 (918)
106 1pui_A ENGB, probable GTP-bind 99.8 5.4E-23 1.8E-27 183.1 -7.2 173 91-283 3-200 (210)
107 1wb9_A DNA mismatch repair pro 99.8 4E-21 1.4E-25 205.5 2.8 168 91-326 577-752 (800)
108 2w0m_A SSO2452; RECA, SSPF, un 99.8 9.1E-22 3.1E-26 177.0 -2.4 168 104-319 9-192 (235)
109 1pzn_A RAD51, DNA repair and r 99.8 1.4E-21 4.8E-26 190.7 -2.2 171 105-326 118-309 (349)
110 2i3b_A HCR-ntpase, human cance 99.8 7.4E-23 2.5E-27 183.6 -10.7 159 117-325 1-169 (189)
111 2qag_C Septin-7; cell cycle, c 99.8 1.6E-21 5.3E-26 194.9 -4.8 166 90-305 10-179 (418)
112 1lw7_A Transcriptional regulat 99.8 2.2E-23 7.6E-28 203.8 -22.3 180 106-333 157-356 (365)
113 1nlf_A Regulatory protein REPA 99.8 2.4E-18 8.1E-23 161.6 11.9 154 113-307 26-185 (279)
114 3jvv_A Twitching mobility prot 99.8 6.3E-20 2.2E-24 179.7 1.1 135 105-319 104-246 (356)
115 2qag_B Septin-6, protein NEDD5 99.7 1.9E-20 6.4E-25 187.2 -4.5 180 91-302 16-218 (427)
116 2qm8_A GTPase/ATPase; G protei 99.7 8.1E-22 2.8E-26 191.6 -19.3 185 91-281 29-260 (337)
117 3kta_B Chromosome segregation 99.7 2.4E-17 8.3E-22 145.9 10.7 86 220-320 58-145 (173)
118 1zp6_A Hypothetical protein AT 99.7 4.9E-21 1.7E-25 168.7 -13.1 141 113-281 5-149 (191)
119 2yhs_A FTSY, cell division pro 99.7 1.8E-20 6E-25 190.1 -11.1 162 107-305 283-450 (503)
120 2bdt_A BH3686; alpha-beta prot 99.7 7.8E-21 2.7E-25 167.8 -12.6 172 117-330 2-182 (189)
121 2bbw_A Adenylate kinase 4, AK4 99.7 1.9E-20 6.4E-25 172.7 -11.2 146 116-283 26-200 (246)
122 2cvh_A DNA repair and recombin 99.7 2E-17 6.8E-22 148.0 8.1 154 105-319 7-185 (220)
123 1htw_A HI0065; nucleotide-bind 99.7 3.5E-20 1.2E-24 161.7 -10.0 92 92-192 8-100 (158)
124 3e70_C DPA, signal recognition 99.7 2.4E-18 8.4E-23 166.7 1.5 169 113-322 125-307 (328)
125 1s96_A Guanylate kinase, GMP k 99.7 6.8E-19 2.3E-23 161.2 -2.6 143 111-330 10-158 (219)
126 2rcn_A Probable GTPase ENGC; Y 99.7 5.8E-18 2E-22 165.8 3.4 123 106-242 205-329 (358)
127 2gza_A Type IV secretion syste 99.7 8.8E-19 3E-23 171.6 -3.6 152 93-320 137-303 (361)
128 1nij_A Hypothetical protein YJ 99.7 6.1E-20 2.1E-24 176.7 -14.5 161 118-309 5-195 (318)
129 2yv5_A YJEQ protein; hydrolase 99.7 2E-18 7E-23 165.0 -4.1 123 113-239 161-300 (302)
130 1n0w_A DNA repair protein RAD5 99.6 2.1E-16 7.3E-21 143.4 7.9 148 113-319 20-209 (243)
131 2ewv_A Twitching motility prot 99.6 1.6E-17 5.3E-22 163.5 0.0 129 106-316 127-256 (372)
132 3auy_A DNA double-strand break 99.6 3.5E-15 1.2E-19 146.2 10.9 77 222-317 276-359 (371)
133 2f1r_A Molybdopterin-guanine d 99.6 6E-18 2E-22 149.4 -8.2 139 118-283 3-163 (171)
134 1p9r_A General secretion pathw 99.6 7.3E-19 2.5E-23 175.6 -15.8 152 91-256 143-314 (418)
135 1u0l_A Probable GTPase ENGC; p 99.6 2.3E-17 7.9E-22 157.5 -5.6 111 112-229 164-294 (301)
136 3ec2_A DNA replication protein 99.5 7.8E-16 2.7E-20 134.7 1.6 112 111-304 32-144 (180)
137 3lda_A DNA repair protein RAD5 99.5 2.1E-15 7E-20 149.8 4.4 150 113-320 174-364 (400)
138 2oap_1 GSPE-2, type II secreti 99.5 1.2E-17 4E-22 170.8 -12.9 175 104-312 247-459 (511)
139 1in4_A RUVB, holliday junction 99.5 1.6E-18 5.3E-23 167.5 -18.9 178 92-312 19-211 (334)
140 1sxj_E Activator 1 40 kDa subu 99.5 9.9E-15 3.4E-19 140.1 6.9 138 119-305 38-176 (354)
141 1lvg_A Guanylate kinase, GMP k 99.5 7.9E-19 2.7E-23 157.5 -20.5 155 115-318 2-173 (198)
142 1udx_A The GTP-binding protein 99.5 3E-15 1E-19 149.3 2.8 147 107-283 147-298 (416)
143 1odf_A YGR205W, hypothetical 3 99.5 4.4E-16 1.5E-20 148.3 -3.8 127 115-267 29-168 (290)
144 1sq5_A Pantothenate kinase; P- 99.5 7.1E-17 2.4E-21 154.5 -11.5 93 91-192 37-153 (308)
145 2x8a_A Nuclear valosin-contain 99.5 3.2E-18 1.1E-22 161.5 -20.7 147 102-276 31-190 (274)
146 2kjq_A DNAA-related protein; s 99.5 2.8E-14 9.7E-19 122.7 5.7 92 106-302 30-124 (149)
147 1t9h_A YLOQ, probable GTPase E 99.5 1.4E-15 4.7E-20 146.1 -3.4 119 112-234 168-303 (307)
148 3c8u_A Fructokinase; YP_612366 99.4 6.7E-16 2.3E-20 138.8 -8.2 152 114-320 19-174 (208)
149 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 4.2E-17 1.4E-21 161.6 -17.7 170 113-326 16-207 (392)
150 2px0_A Flagellar biosynthesis 99.3 1.2E-12 4.1E-17 124.8 5.7 145 115-325 103-248 (296)
151 2ius_A DNA translocase FTSK; n 99.3 4.4E-14 1.5E-18 144.1 -4.8 181 109-316 159-362 (512)
152 1ls1_A Signal recognition part 99.3 1.2E-12 4E-17 124.8 4.5 133 92-280 77-210 (295)
153 1vma_A Cell division protein F 99.3 2.2E-12 7.4E-17 123.8 6.0 114 109-280 96-212 (306)
154 3euj_A Chromosome partition pr 99.3 7.9E-13 2.7E-17 134.0 2.6 52 104-156 17-68 (483)
155 2dr3_A UPF0273 protein PH0284; 99.2 4.7E-13 1.6E-17 121.3 -0.8 171 106-318 11-196 (247)
156 2r6a_A DNAB helicase, replicat 99.2 9.8E-13 3.3E-17 132.1 1.4 183 104-321 190-401 (454)
157 1iy2_A ATP-dependent metallopr 99.2 2E-16 6.7E-21 148.3 -24.0 134 91-243 49-186 (278)
158 1ixz_A ATP-dependent metallopr 99.2 1.9E-16 6.3E-21 146.1 -24.3 143 91-261 25-171 (254)
159 1qhl_A Protein (cell division 99.2 2.6E-13 8.7E-18 125.0 -3.5 77 91-175 9-91 (227)
160 3tr0_A Guanylate kinase, GMP k 99.2 2.9E-13 1E-17 119.8 -3.1 74 111-190 1-74 (205)
161 2zr9_A Protein RECA, recombina 99.2 1.3E-11 4.6E-16 120.2 6.3 78 233-325 126-236 (349)
162 3k1j_A LON protease, ATP-depen 99.2 3.8E-13 1.3E-17 139.7 -7.1 167 95-278 38-227 (604)
163 1oix_A RAS-related protein RAB 99.1 6.3E-11 2.1E-15 104.3 4.2 37 119-155 31-78 (191)
164 3lnc_A Guanylate kinase, GMP k 99.0 1.1E-10 3.8E-15 106.0 2.2 191 105-320 15-212 (231)
165 2f9l_A RAB11B, member RAS onco 98.9 5.8E-10 2E-14 98.3 3.8 37 235-280 130-166 (199)
166 4eun_A Thermoresistant glucoki 98.9 3.4E-11 1.1E-15 107.2 -4.2 73 111-190 23-95 (200)
167 3nwj_A ATSK2; P loop, shikimat 98.9 8.9E-11 3E-15 109.4 -2.2 52 90-141 16-72 (250)
168 3kta_A Chromosome segregation 98.9 6.4E-10 2.2E-14 96.7 2.6 72 105-177 13-90 (182)
169 3hr8_A Protein RECA; alpha and 98.9 1.2E-09 4E-14 106.9 4.4 42 113-154 57-99 (356)
170 4e22_A Cytidylate kinase; P-lo 98.8 2.1E-10 7.2E-15 106.2 -1.0 83 102-188 15-113 (252)
171 2qtf_A Protein HFLX, GTP-bindi 98.8 3.1E-08 1.1E-12 96.9 11.5 141 119-282 181-354 (364)
172 3uie_A Adenylyl-sulfate kinase 98.8 2.6E-10 8.8E-15 101.4 -3.5 60 95-155 3-64 (200)
173 1zu4_A FTSY; GTPase, signal re 98.7 1.1E-09 3.8E-14 105.4 -0.6 84 107-190 95-186 (320)
174 2dhr_A FTSH; AAA+ protein, hex 98.7 5.1E-11 1.8E-15 121.3 -12.2 144 91-262 40-187 (499)
175 3a00_A Guanylate kinase, GMP k 98.7 3.6E-09 1.2E-13 92.9 0.9 33 117-149 1-33 (186)
176 2e87_A Hypothetical protein PH 98.6 1.7E-08 5.7E-13 98.0 5.1 125 116-304 166-293 (357)
177 2j41_A Guanylate kinase; GMP, 98.6 1.8E-08 6.1E-13 88.8 4.0 35 112-146 1-35 (207)
178 1jjv_A Dephospho-COA kinase; P 98.6 4.5E-09 1.5E-13 93.3 0.2 127 119-318 4-132 (206)
179 2xau_A PRE-mRNA-splicing facto 98.6 4.3E-08 1.5E-12 104.7 7.3 74 222-312 186-261 (773)
180 2ce7_A Cell division protein F 98.6 4.7E-08 1.6E-12 98.9 6.5 126 94-306 28-167 (476)
181 3t34_A Dynamin-related protein 98.5 1.2E-07 4E-12 92.0 8.0 46 104-152 24-71 (360)
182 4a1f_A DNAB helicase, replicat 98.5 2.3E-07 7.7E-12 90.0 9.0 128 106-300 35-163 (338)
183 1fnn_A CDC6P, cell division co 98.5 3.5E-07 1.2E-11 87.8 9.3 48 251-309 125-175 (389)
184 1kgd_A CASK, peripheral plasma 98.4 5.7E-08 2E-12 84.9 2.3 35 116-150 4-39 (180)
185 3vaa_A Shikimate kinase, SK; s 98.4 9.6E-08 3.3E-12 84.6 3.3 38 104-141 12-49 (199)
186 3tqc_A Pantothenate kinase; bi 98.4 3E-09 1E-13 102.5 -7.1 55 95-149 64-126 (321)
187 2dy1_A Elongation factor G; tr 98.4 4.4E-08 1.5E-12 102.9 0.9 66 111-179 3-70 (665)
188 2vp4_A Deoxynucleoside kinase; 98.4 7.6E-08 2.6E-12 87.4 1.5 42 110-155 13-54 (230)
189 1rz3_A Hypothetical protein rb 98.3 5.5E-08 1.9E-12 86.5 -0.0 43 113-155 18-60 (201)
190 2p67_A LAO/AO transport system 98.3 5.2E-09 1.8E-13 101.2 -9.2 65 91-155 30-94 (341)
191 3ney_A 55 kDa erythrocyte memb 98.3 2.5E-07 8.6E-12 83.1 2.2 31 112-142 14-44 (197)
192 3tau_A Guanylate kinase, GMP k 98.3 4E-07 1.4E-11 81.4 3.4 35 115-149 6-41 (208)
193 3cr8_A Sulfate adenylyltranfer 98.2 2.1E-07 7.3E-12 95.7 1.4 107 113-228 365-483 (552)
194 1knq_A Gluconate kinase; ALFA/ 98.2 2.4E-07 8.1E-12 79.8 1.4 37 115-155 6-42 (175)
195 1svm_A Large T antigen; AAA+ f 98.2 1.9E-07 6.6E-12 91.8 -0.4 139 104-262 156-312 (377)
196 2qt1_A Nicotinamide riboside k 98.2 9.2E-07 3.1E-11 78.4 4.0 34 109-142 13-46 (207)
197 1cke_A CK, MSSA, protein (cyti 98.1 5.5E-08 1.9E-12 87.1 -4.6 59 117-176 5-74 (227)
198 1ega_A Protein (GTP-binding pr 98.1 3.4E-07 1.1E-11 86.9 0.5 158 116-314 7-170 (301)
199 3kl4_A SRP54, signal recogniti 98.1 4.2E-06 1.4E-10 83.7 8.1 39 116-154 96-134 (433)
200 1sxj_C Activator 1 40 kDa subu 98.1 7.4E-08 2.5E-12 92.3 -4.5 53 98-150 25-79 (340)
201 3m6a_A ATP-dependent protease 98.1 5.8E-08 2E-12 99.7 -6.6 61 92-153 84-144 (543)
202 3lxx_A GTPase IMAP family memb 98.0 5.5E-05 1.9E-09 68.4 13.3 29 119-147 31-59 (239)
203 3bh0_A DNAB-like replicative h 98.0 6.8E-06 2.3E-10 78.3 7.5 122 105-282 56-177 (315)
204 2z4s_A Chromosomal replication 98.0 6.8E-07 2.3E-11 89.3 0.5 67 251-327 194-263 (440)
205 1kag_A SKI, shikimate kinase I 98.0 1.7E-06 5.7E-11 74.0 2.4 33 116-152 3-35 (173)
206 1v5w_A DMC1, meiotic recombina 98.0 2.5E-05 8.4E-10 75.4 11.0 28 113-140 118-145 (343)
207 2z43_A DNA repair and recombin 97.9 5.7E-05 1.9E-09 72.1 11.6 28 113-140 103-130 (324)
208 2qby_A CDC6 homolog 1, cell di 97.9 9.8E-07 3.4E-11 84.1 -0.9 30 115-144 43-72 (386)
209 2pez_A Bifunctional 3'-phospho 97.9 2E-06 6.9E-11 74.4 1.2 39 115-154 3-43 (179)
210 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 6.9E-06 2.4E-10 70.0 4.1 31 108-139 15-45 (149)
211 2ffh_A Protein (FFH); SRP54, s 97.9 7.1E-07 2.4E-11 89.1 -2.6 59 94-156 79-137 (425)
212 2www_A Methylmalonic aciduria 97.9 2.3E-06 8E-11 82.9 1.0 41 115-155 72-112 (349)
213 1mky_A Probable GTP-binding pr 97.9 8.9E-06 3.1E-10 80.9 5.2 165 118-307 181-369 (439)
214 3b9p_A CG5977-PA, isoform A; A 97.9 2.8E-05 9.4E-10 72.4 7.8 26 116-141 53-78 (297)
215 4eaq_A DTMP kinase, thymidylat 97.9 5.1E-06 1.7E-10 75.7 2.7 45 106-151 12-59 (229)
216 3ice_A Transcription terminati 97.8 1.7E-06 6E-11 85.3 -0.9 51 91-141 133-198 (422)
217 1m7g_A Adenylylsulfate kinase; 97.8 3.1E-06 1.1E-10 75.4 0.5 43 112-154 20-64 (211)
218 1ypw_A Transitional endoplasmi 97.8 5.4E-06 1.8E-10 88.9 1.8 31 112-142 233-263 (806)
219 1f6b_A SAR1; gtpases, N-termin 97.8 4.1E-06 1.4E-10 73.6 0.6 55 98-153 6-69 (198)
220 1j8m_F SRP54, signal recogniti 97.7 6.8E-07 2.3E-11 85.0 -5.3 59 94-155 77-136 (297)
221 2q6t_A DNAB replication FORK h 97.7 0.00019 6.5E-09 71.4 12.1 178 105-318 188-397 (444)
222 1m2o_B GTP-binding protein SAR 97.7 2.2E-05 7.5E-10 68.3 4.7 48 105-153 12-67 (190)
223 2qag_A Septin-2, protein NEDD5 97.7 1.8E-06 6E-11 84.2 -2.7 56 91-152 17-72 (361)
224 1u94_A RECA protein, recombina 97.7 5.6E-05 1.9E-09 73.6 7.4 27 114-140 60-86 (356)
225 3cf0_A Transitional endoplasmi 97.7 2.7E-05 9.3E-10 73.3 4.6 30 112-141 44-73 (301)
226 2gj8_A MNME, tRNA modification 97.7 4.4E-05 1.5E-09 65.4 5.5 27 115-141 2-28 (172)
227 3qks_A DNA double-strand break 97.6 4E-05 1.4E-09 68.4 4.1 30 108-138 15-44 (203)
228 2yvu_A Probable adenylyl-sulfa 97.6 1.4E-05 4.8E-10 69.4 1.0 41 112-152 8-49 (186)
229 1y63_A LMAJ004144AAA protein; 97.5 3.5E-05 1.2E-09 67.1 3.1 32 109-140 2-33 (184)
230 2wji_A Ferrous iron transport 97.5 0.00011 3.7E-09 62.2 5.7 24 119-142 5-28 (165)
231 2if2_A Dephospho-COA kinase; a 97.5 4E-05 1.4E-09 67.3 3.0 22 119-140 3-24 (204)
232 3auy_A DNA double-strand break 97.5 9.4E-05 3.2E-09 71.9 5.8 32 106-138 15-46 (371)
233 2wjg_A FEOB, ferrous iron tran 97.5 6.8E-05 2.3E-09 64.1 4.1 22 119-140 9-30 (188)
234 2qor_A Guanylate kinase; phosp 97.4 5.8E-05 2E-09 66.7 3.0 30 113-142 8-37 (204)
235 2ohf_A Protein OLA1, GTP-bindi 97.4 6.6E-05 2.3E-09 74.2 3.6 41 113-153 18-69 (396)
236 2w58_A DNAI, primosome compone 97.4 0.0003 1E-08 61.5 7.5 25 118-142 55-79 (202)
237 1l8q_A Chromosomal replication 97.4 0.00045 1.5E-08 65.1 8.8 33 251-283 98-131 (324)
238 1np6_A Molybdopterin-guanine d 97.3 8E-05 2.7E-09 65.3 2.1 36 118-153 7-45 (174)
239 2zej_A Dardarin, leucine-rich 97.3 0.00012 4.2E-09 62.9 3.0 26 119-144 4-29 (184)
240 3h4m_A Proteasome-activating n 97.2 0.00031 1.1E-08 64.6 5.4 28 114-141 48-75 (285)
241 3cm0_A Adenylate kinase; ATP-b 97.2 0.00016 5.3E-09 62.3 3.2 25 115-139 2-26 (186)
242 3t61_A Gluconokinase; PSI-biol 97.2 0.00014 4.8E-09 63.8 2.6 33 117-153 18-50 (202)
243 2p5t_B PEZT; postsegregational 97.2 0.00013 4.5E-09 66.9 2.3 40 113-154 28-67 (253)
244 2ga8_A Hypothetical 39.9 kDa p 97.1 4.6E-05 1.6E-09 74.3 -1.2 37 105-141 10-48 (359)
245 1q3t_A Cytidylate kinase; nucl 97.1 0.00022 7.6E-09 64.4 3.2 36 114-149 13-51 (236)
246 1lv7_A FTSH; alpha/beta domain 97.1 0.00016 5.6E-09 65.8 2.1 44 106-153 36-79 (257)
247 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.3E-09 59.6 3.2 23 119-141 3-25 (173)
248 3r20_A Cytidylate kinase; stru 97.1 9.9E-05 3.4E-09 67.8 0.5 32 117-148 9-43 (233)
249 1qhx_A CPT, protein (chloramph 97.0 0.00035 1.2E-08 59.6 3.5 26 117-142 3-28 (178)
250 1gtv_A TMK, thymidylate kinase 97.0 0.00011 3.8E-09 64.6 -0.1 30 119-148 2-31 (214)
251 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00021 7E-09 69.6 1.6 59 251-319 262-335 (392)
252 1kht_A Adenylate kinase; phosp 96.9 0.00046 1.6E-08 59.1 3.4 25 117-141 3-27 (192)
253 1xp8_A RECA protein, recombina 96.9 0.001 3.5E-08 64.9 6.1 27 113-139 70-96 (366)
254 1vht_A Dephospho-COA kinase; s 96.9 0.00048 1.6E-08 61.1 3.4 24 116-139 3-26 (218)
255 3lw7_A Adenylate kinase relate 96.9 0.00049 1.7E-08 57.6 3.1 19 119-137 3-21 (179)
256 2rhm_A Putative kinase; P-loop 96.9 0.00047 1.6E-08 59.4 2.9 27 115-141 3-29 (193)
257 1uf9_A TT1252 protein; P-loop, 96.9 0.00041 1.4E-08 60.2 2.6 32 117-153 8-39 (203)
258 3ihw_A Centg3; RAS, centaurin, 96.9 0.0011 3.8E-08 57.0 5.4 35 119-153 22-65 (184)
259 2jaq_A Deoxyguanosine kinase; 96.8 0.00059 2E-08 59.1 3.3 23 119-141 2-24 (205)
260 1q57_A DNA primase/helicase; d 96.8 0.015 5E-07 58.5 13.8 33 107-139 232-264 (503)
261 4fcw_A Chaperone protein CLPB; 96.8 6.3E-05 2.2E-09 70.1 -3.5 47 102-148 21-78 (311)
262 1jal_A YCHF protein; nucleotid 96.8 0.00096 3.3E-08 65.1 4.6 36 117-152 2-48 (363)
263 2ze6_A Isopentenyl transferase 96.8 0.00062 2.1E-08 62.6 3.1 24 118-141 2-25 (253)
264 3iij_A Coilin-interacting nucl 96.8 0.0004 1.4E-08 59.6 1.7 25 115-139 9-33 (180)
265 3trf_A Shikimate kinase, SK; a 96.7 0.00078 2.7E-08 57.8 3.4 26 116-141 4-29 (185)
266 1ly1_A Polynucleotide kinase; 96.7 0.00083 2.8E-08 57.0 3.3 31 118-151 3-33 (181)
267 2v54_A DTMP kinase, thymidylat 96.7 0.00089 3.1E-08 58.2 3.6 26 116-141 3-28 (204)
268 3cmw_A Protein RECA, recombina 96.7 0.0015 5E-08 74.9 6.1 30 114-143 729-758 (1706)
269 1ex7_A Guanylate kinase; subst 96.7 0.00076 2.6E-08 59.7 3.1 22 120-141 4-25 (186)
270 1via_A Shikimate kinase; struc 96.7 0.00078 2.7E-08 57.6 3.0 23 119-141 6-28 (175)
271 2plr_A DTMP kinase, probable t 96.7 0.00099 3.4E-08 58.0 3.6 28 116-143 3-30 (213)
272 1ko7_A HPR kinase/phosphatase; 96.6 0.0015 5E-08 62.6 4.8 49 103-152 131-183 (314)
273 2b8t_A Thymidine kinase; deoxy 96.6 0.003 1E-07 57.4 6.7 52 251-317 89-150 (223)
274 2wwf_A Thymidilate kinase, put 96.6 0.001 3.4E-08 58.2 3.4 26 115-140 8-33 (212)
275 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.5E-08 57.3 3.4 27 115-141 7-33 (196)
276 1gvn_B Zeta; postsegregational 96.6 0.00089 3.1E-08 62.8 3.2 36 115-152 31-66 (287)
277 1tev_A UMP-CMP kinase; ploop, 96.6 0.0012 4E-08 56.7 3.4 24 117-140 3-26 (196)
278 1fzq_A ADP-ribosylation factor 96.6 0.001 3.5E-08 57.0 2.9 23 118-140 17-39 (181)
279 1nn5_A Similar to deoxythymidy 96.6 0.0012 3.9E-08 57.9 3.2 27 114-140 6-32 (215)
280 1nks_A Adenylate kinase; therm 96.5 0.0011 3.9E-08 56.7 3.1 23 119-141 3-25 (194)
281 3k53_A Ferrous iron transport 96.5 0.0011 3.9E-08 61.0 3.1 48 260-316 144-191 (271)
282 3ake_A Cytidylate kinase; CMP 96.5 0.0012 4.1E-08 57.4 3.0 23 119-141 4-26 (208)
283 2z0h_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 56.6 3.2 23 119-141 2-24 (197)
284 2vli_A Antibiotic resistance p 96.4 0.0011 3.8E-08 56.6 2.4 26 116-141 4-29 (183)
285 1xjc_A MOBB protein homolog; s 96.4 0.00081 2.8E-08 58.7 1.5 26 118-143 5-30 (169)
286 3bgw_A DNAB-like replicative h 96.4 0.0052 1.8E-07 61.3 7.3 34 106-139 186-219 (444)
287 2bwj_A Adenylate kinase 5; pho 96.4 0.0017 5.9E-08 56.0 3.3 28 114-141 9-36 (199)
288 2ged_A SR-beta, signal recogni 96.3 0.0018 6.3E-08 55.4 3.1 24 118-141 49-72 (193)
289 3llm_A ATP-dependent RNA helic 96.3 0.0013 4.3E-08 59.4 2.1 59 114-190 73-131 (235)
290 1aky_A Adenylate kinase; ATP:A 96.3 0.0022 7.6E-08 56.9 3.6 26 116-141 3-28 (220)
291 2pbr_A DTMP kinase, thymidylat 96.3 0.0021 7.2E-08 55.1 3.2 23 119-141 2-24 (195)
292 3fb4_A Adenylate kinase; psych 96.3 0.0021 7.3E-08 56.6 3.2 22 119-140 2-23 (216)
293 2nzj_A GTP-binding protein REM 96.3 0.0022 7.4E-08 53.6 3.2 23 119-141 6-28 (175)
294 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.2E-08 57.4 3.2 27 115-141 5-31 (227)
295 1z2a_A RAS-related protein RAB 96.3 0.002 6.7E-08 53.3 2.8 23 119-141 7-29 (168)
296 1e6c_A Shikimate kinase; phosp 96.2 0.0019 6.6E-08 54.5 2.7 24 118-141 3-26 (173)
297 2erx_A GTP-binding protein DI- 96.2 0.0023 7.8E-08 53.1 3.1 22 119-140 5-26 (172)
298 3q72_A GTP-binding protein RAD 96.2 0.0018 6.1E-08 53.7 2.3 24 119-142 4-27 (166)
299 1zuh_A Shikimate kinase; alpha 96.2 0.0026 8.8E-08 53.8 3.3 24 117-140 7-30 (168)
300 2pt5_A Shikimate kinase, SK; a 96.2 0.0026 8.8E-08 53.6 3.3 22 119-140 2-23 (168)
301 2ce2_X GTPase HRAS; signaling 96.2 0.002 6.8E-08 52.8 2.5 23 119-141 5-27 (166)
302 1qf9_A UMP/CMP kinase, protein 96.2 0.0023 7.9E-08 54.7 3.0 24 117-140 6-29 (194)
303 1kao_A RAP2A; GTP-binding prot 96.2 0.0022 7.7E-08 52.7 2.8 22 119-140 5-26 (167)
304 1ukz_A Uridylate kinase; trans 96.2 0.0025 8.5E-08 55.6 3.2 25 117-141 15-39 (203)
305 3q85_A GTP-binding protein REM 96.2 0.0025 8.5E-08 53.0 3.1 23 119-141 4-26 (169)
306 2cdn_A Adenylate kinase; phosp 96.2 0.0028 9.5E-08 55.3 3.5 24 117-140 20-43 (201)
307 3cbq_A GTP-binding protein REM 96.2 0.0022 7.5E-08 55.8 2.8 22 119-140 25-46 (195)
308 2dyk_A GTP-binding protein; GT 96.2 0.0023 7.8E-08 52.7 2.8 23 119-141 3-25 (161)
309 2qmh_A HPR kinase/phosphorylas 96.2 0.0036 1.2E-07 56.3 4.2 38 103-141 21-58 (205)
310 1zak_A Adenylate kinase; ATP:A 96.2 0.0021 7E-08 57.2 2.7 26 116-141 4-29 (222)
311 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.7E-08 56.1 3.2 22 119-140 2-23 (216)
312 1u8z_A RAS-related protein RAL 96.2 0.0023 7.8E-08 52.7 2.8 22 119-140 6-27 (168)
313 3b1v_A Ferrous iron uptake tra 96.1 0.0027 9.2E-08 59.2 3.4 23 119-141 5-27 (272)
314 3cmu_A Protein RECA, recombina 96.1 0.0042 1.5E-07 72.1 5.6 28 114-141 380-407 (2050)
315 1z0j_A RAB-22, RAS-related pro 96.1 0.0025 8.5E-08 52.8 2.8 23 119-141 8-30 (170)
316 2lkc_A Translation initiation 96.1 0.0034 1.2E-07 52.6 3.7 25 116-140 7-31 (178)
317 3tw8_B RAS-related protein RAB 96.1 0.0023 8E-08 53.5 2.6 23 119-141 11-33 (181)
318 1z08_A RAS-related protein RAB 96.1 0.0025 8.7E-08 52.9 2.8 22 119-140 8-29 (170)
319 1ek0_A Protein (GTP-binding pr 96.1 0.0025 8.6E-08 52.7 2.8 23 119-141 5-27 (170)
320 1ky3_A GTP-binding protein YPT 96.1 0.0026 8.9E-08 53.3 2.8 23 119-141 10-32 (182)
321 2iyv_A Shikimate kinase, SK; t 96.1 0.0024 8.1E-08 54.8 2.6 23 118-140 3-25 (184)
322 1c1y_A RAS-related protein RAP 96.1 0.0026 8.9E-08 52.5 2.8 22 119-140 5-26 (167)
323 1g16_A RAS-related protein SEC 96.1 0.0024 8.2E-08 52.9 2.5 23 119-141 5-27 (170)
324 1uj2_A Uridine-cytidine kinase 96.1 0.0029 1E-07 57.6 3.2 24 118-141 23-46 (252)
325 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0027 9.2E-08 53.2 2.8 23 119-141 9-31 (177)
326 1svi_A GTP-binding protein YSX 96.1 0.0025 8.6E-08 54.5 2.7 23 118-140 24-46 (195)
327 2fn4_A P23, RAS-related protei 96.1 0.0026 8.9E-08 53.3 2.6 22 119-140 11-32 (181)
328 3pqc_A Probable GTP-binding pr 96.0 0.0029 1E-07 53.7 2.9 23 119-141 25-47 (195)
329 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0035 1.2E-07 57.6 3.6 25 116-140 3-27 (260)
330 3bos_A Putative DNA replicatio 96.0 0.0036 1.2E-07 55.1 3.5 27 116-142 51-77 (242)
331 2cxx_A Probable GTP-binding pr 96.0 0.0028 9.5E-08 53.7 2.7 23 119-141 3-25 (190)
332 2grj_A Dephospho-COA kinase; T 96.0 0.0035 1.2E-07 55.4 3.2 24 117-140 12-35 (192)
333 3lxw_A GTPase IMAP family memb 96.0 0.0032 1.1E-07 57.4 3.1 24 119-142 23-46 (247)
334 3clv_A RAB5 protein, putative; 96.0 0.0031 1.1E-07 53.6 2.8 23 119-141 9-31 (208)
335 1r2q_A RAS-related protein RAB 96.0 0.0032 1.1E-07 52.1 2.8 22 119-140 8-29 (170)
336 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0032 1.1E-07 53.2 2.8 23 119-141 6-28 (189)
337 3bc1_A RAS-related protein RAB 96.0 0.0032 1.1E-07 53.2 2.8 22 119-140 13-34 (195)
338 3t1o_A Gliding protein MGLA; G 96.0 0.0034 1.2E-07 53.3 3.0 25 119-143 16-40 (198)
339 2hxs_A RAB-26, RAS-related pro 96.0 0.0037 1.3E-07 52.4 3.1 23 119-141 8-30 (178)
340 2oil_A CATX-8, RAS-related pro 96.0 0.0033 1.1E-07 53.8 2.8 23 119-141 27-49 (193)
341 3cmw_A Protein RECA, recombina 95.9 0.0068 2.3E-07 69.5 6.1 26 114-139 380-405 (1706)
342 1moz_A ARL1, ADP-ribosylation 95.9 0.002 6.8E-08 54.4 1.4 23 117-139 18-40 (183)
343 1upt_A ARL1, ADP-ribosylation 95.9 0.0035 1.2E-07 52.1 2.8 21 119-139 9-29 (171)
344 1r8s_A ADP-ribosylation factor 95.9 0.0037 1.2E-07 51.7 2.8 20 120-139 3-22 (164)
345 2xb4_A Adenylate kinase; ATP-b 95.9 0.0042 1.4E-07 55.5 3.3 23 119-141 2-24 (223)
346 2y8e_A RAB-protein 6, GH09086P 95.9 0.0034 1.2E-07 52.4 2.5 22 119-140 16-37 (179)
347 2a9k_A RAS-related protein RAL 95.9 0.0038 1.3E-07 52.6 2.8 23 119-141 20-42 (187)
348 2f6r_A COA synthase, bifunctio 95.9 0.0038 1.3E-07 58.2 3.1 23 117-139 75-97 (281)
349 3tlx_A Adenylate kinase 2; str 95.9 0.0045 1.5E-07 56.3 3.4 24 116-139 28-51 (243)
350 2g6b_A RAS-related protein RAB 95.9 0.0039 1.3E-07 52.3 2.8 23 119-141 12-34 (180)
351 1z0f_A RAB14, member RAS oncog 95.9 0.0039 1.3E-07 52.0 2.8 23 119-141 17-39 (179)
352 1a7j_A Phosphoribulokinase; tr 95.8 0.0023 7.8E-08 60.2 1.4 26 116-141 4-29 (290)
353 3con_A GTPase NRAS; structural 95.8 0.0039 1.3E-07 53.1 2.8 23 119-141 23-45 (190)
354 1wf3_A GTP-binding protein; GT 95.8 0.0045 1.5E-07 58.4 3.3 22 119-140 9-30 (301)
355 1jbk_A CLPB protein; beta barr 95.8 0.0055 1.9E-07 51.4 3.5 26 116-141 42-67 (195)
356 1njg_A DNA polymerase III subu 95.8 0.00089 3E-08 58.4 -1.6 37 106-142 31-70 (250)
357 2efe_B Small GTP-binding prote 95.8 0.0044 1.5E-07 52.1 2.8 23 119-141 14-36 (181)
358 4dhe_A Probable GTP-binding pr 95.7 0.0033 1.1E-07 55.1 2.0 24 118-141 30-53 (223)
359 2bme_A RAB4A, RAS-related prot 95.7 0.0042 1.4E-07 52.5 2.5 23 119-141 12-34 (186)
360 3iev_A GTP-binding protein ERA 95.7 0.005 1.7E-07 58.1 3.3 23 119-141 12-34 (308)
361 2bov_A RAla, RAS-related prote 95.7 0.0045 1.5E-07 53.2 2.8 22 119-140 16-37 (206)
362 1nrj_B SR-beta, signal recogni 95.7 0.0049 1.7E-07 53.9 3.0 23 119-141 14-36 (218)
363 1vg8_A RAS-related protein RAB 95.7 0.0047 1.6E-07 53.3 2.8 23 119-141 10-32 (207)
364 2dby_A GTP-binding protein; GD 95.7 0.0044 1.5E-07 60.4 2.8 21 120-140 4-24 (368)
365 3tkl_A RAS-related protein RAB 95.7 0.0048 1.7E-07 52.6 2.8 23 119-141 18-40 (196)
366 3t5d_A Septin-7; GTP-binding p 95.7 0.0041 1.4E-07 57.4 2.5 22 120-141 11-32 (274)
367 2gf9_A RAS-related protein RAB 95.7 0.0049 1.7E-07 52.7 2.8 23 119-141 24-46 (189)
368 2gf0_A GTP-binding protein DI- 95.7 0.0046 1.6E-07 52.9 2.6 22 119-140 10-31 (199)
369 1e4v_A Adenylate kinase; trans 95.7 0.0053 1.8E-07 54.2 3.0 22 119-140 2-23 (214)
370 3kkq_A RAS-related protein M-R 95.7 0.0051 1.7E-07 52.0 2.8 22 119-140 20-41 (183)
371 1m7b_A RND3/RHOE small GTP-bin 95.7 0.0046 1.6E-07 52.6 2.5 22 119-140 9-30 (184)
372 1ksh_A ARF-like protein 2; sma 95.7 0.0051 1.7E-07 52.2 2.8 26 116-141 17-42 (186)
373 3iby_A Ferrous iron transport 95.7 0.0054 1.8E-07 56.4 3.1 23 119-141 3-25 (256)
374 2xtp_A GTPase IMAP family memb 95.6 0.0056 1.9E-07 55.6 3.1 23 119-141 24-46 (260)
375 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0052 1.8E-07 51.7 2.8 21 119-139 7-27 (186)
376 3be4_A Adenylate kinase; malar 95.6 0.0058 2E-07 54.2 3.2 26 116-141 4-29 (217)
377 2fg5_A RAB-22B, RAS-related pr 95.6 0.0049 1.7E-07 53.0 2.6 23 119-141 25-47 (192)
378 3tqf_A HPR(Ser) kinase; transf 95.6 0.01 3.4E-07 52.3 4.5 35 104-139 4-38 (181)
379 1zbd_A Rabphilin-3A; G protein 95.6 0.0059 2E-07 52.6 3.1 23 119-141 10-32 (203)
380 2wsm_A Hydrogenase expression/ 95.6 0.0053 1.8E-07 53.9 2.8 24 118-141 31-54 (221)
381 1ltq_A Polynucleotide kinase; 95.6 0.006 2.1E-07 56.5 3.3 22 118-139 3-24 (301)
382 1z06_A RAS-related protein RAB 95.6 0.0059 2E-07 52.1 2.8 22 119-140 22-43 (189)
383 2cjw_A GTP-binding protein GEM 95.6 0.0057 2E-07 53.0 2.8 22 119-140 8-29 (192)
384 3oes_A GTPase rhebl1; small GT 95.6 0.0054 1.8E-07 53.1 2.5 23 119-141 26-48 (201)
385 3t5g_A GTP-binding protein RHE 95.5 0.0055 1.9E-07 51.6 2.5 21 119-139 8-28 (181)
386 3bwd_D RAC-like GTP-binding pr 95.5 0.006 2.1E-07 51.2 2.8 22 119-140 10-31 (182)
387 2il1_A RAB12; G-protein, GDP, 95.5 0.0055 1.9E-07 52.7 2.6 22 120-141 29-50 (192)
388 2o52_A RAS-related protein RAB 95.5 0.0062 2.1E-07 52.8 2.9 22 119-140 27-48 (200)
389 2a5j_A RAS-related protein RAB 95.5 0.0061 2.1E-07 52.2 2.8 23 119-141 23-45 (191)
390 3cnl_A YLQF, putative uncharac 95.5 0.0074 2.5E-07 55.9 3.5 31 118-148 100-130 (262)
391 1zj6_A ADP-ribosylation factor 95.5 0.0063 2.2E-07 51.9 2.9 23 118-140 17-39 (187)
392 3dz8_A RAS-related protein RAB 95.5 0.0056 1.9E-07 52.4 2.5 23 119-141 25-47 (191)
393 4edh_A DTMP kinase, thymidylat 95.5 0.0077 2.6E-07 54.1 3.5 29 115-143 4-32 (213)
394 1jwy_B Dynamin A GTPase domain 95.5 0.0066 2.3E-07 56.5 3.1 23 119-141 26-48 (315)
395 2iwr_A Centaurin gamma 1; ANK 95.5 0.0054 1.8E-07 51.5 2.3 22 119-140 9-30 (178)
396 2h57_A ADP-ribosylation factor 95.5 0.0047 1.6E-07 52.8 1.9 23 119-141 23-45 (190)
397 4bas_A ADP-ribosylation factor 95.5 0.0061 2.1E-07 52.1 2.7 22 119-140 19-40 (199)
398 3reg_A RHO-like small GTPase; 95.5 0.0064 2.2E-07 52.1 2.8 23 119-141 25-47 (194)
399 1ak2_A Adenylate kinase isoenz 95.5 0.008 2.7E-07 53.9 3.5 26 116-141 15-40 (233)
400 2p65_A Hypothetical protein PF 95.5 0.0071 2.4E-07 50.8 3.0 28 116-143 42-69 (187)
401 1x3s_A RAS-related protein RAB 95.5 0.0065 2.2E-07 51.6 2.8 23 119-141 17-39 (195)
402 1zd9_A ADP-ribosylation factor 95.5 0.0066 2.3E-07 52.0 2.8 22 119-140 24-45 (188)
403 3a1s_A Iron(II) transport prot 95.5 0.0077 2.6E-07 55.4 3.4 23 119-141 7-29 (258)
404 2atv_A RERG, RAS-like estrogen 95.5 0.0067 2.3E-07 52.2 2.8 22 119-140 30-51 (196)
405 3cph_A RAS-related protein SEC 95.4 0.0066 2.3E-07 52.5 2.8 23 119-141 22-44 (213)
406 2h17_A ADP-ribosylation factor 95.4 0.0059 2E-07 51.8 2.4 22 119-140 23-44 (181)
407 1sxj_D Activator 1 41 kDa subu 95.4 0.0017 5.8E-08 61.2 -1.2 38 105-142 44-83 (353)
408 3v9p_A DTMP kinase, thymidylat 95.4 0.0061 2.1E-07 55.5 2.6 28 115-142 23-50 (227)
409 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0062 2.1E-07 52.8 2.5 23 119-141 10-32 (206)
410 3i8s_A Ferrous iron transport 95.4 0.0072 2.5E-07 56.0 3.2 23 119-141 5-27 (274)
411 2ew1_A RAS-related protein RAB 95.4 0.0061 2.1E-07 53.4 2.5 22 119-140 28-49 (201)
412 2f7s_A C25KG, RAS-related prot 95.4 0.0076 2.6E-07 52.6 3.2 22 120-141 28-49 (217)
413 3d3q_A TRNA delta(2)-isopenten 95.4 0.0074 2.5E-07 58.3 3.2 25 118-142 8-32 (340)
414 2p5s_A RAS and EF-hand domain 95.4 0.0069 2.3E-07 52.3 2.8 23 119-141 30-52 (199)
415 2qu8_A Putative nucleolar GTP- 95.4 0.0074 2.5E-07 53.6 3.0 22 119-140 31-52 (228)
416 3llu_A RAS-related GTP-binding 95.4 0.008 2.7E-07 51.9 3.1 24 119-142 22-45 (196)
417 1sky_E F1-ATPase, F1-ATP synth 95.4 0.0072 2.5E-07 60.9 3.2 43 105-148 140-182 (473)
418 2q3h_A RAS homolog gene family 95.4 0.0079 2.7E-07 51.7 3.1 22 119-140 22-43 (201)
419 2h92_A Cytidylate kinase; ross 95.4 0.0072 2.5E-07 53.2 2.9 25 117-141 3-27 (219)
420 3zvl_A Bifunctional polynucleo 95.4 0.0074 2.5E-07 59.5 3.2 28 113-140 254-281 (416)
421 2i1q_A DNA repair and recombin 95.4 0.0092 3.2E-07 56.2 3.7 27 113-139 94-120 (322)
422 3lv8_A DTMP kinase, thymidylat 95.4 0.0085 2.9E-07 54.8 3.3 27 116-142 26-52 (236)
423 2fv8_A H6, RHO-related GTP-bin 95.3 0.0072 2.5E-07 52.6 2.6 23 119-141 27-49 (207)
424 2j1l_A RHO-related GTP-binding 95.3 0.008 2.7E-07 52.8 2.9 22 119-140 36-57 (214)
425 3c5c_A RAS-like protein 12; GD 95.3 0.0083 2.8E-07 51.4 2.8 22 119-140 23-44 (187)
426 2ocp_A DGK, deoxyguanosine kin 95.3 0.0095 3.3E-07 53.6 3.3 27 116-142 1-27 (241)
427 1gwn_A RHO-related GTP-binding 95.3 0.0076 2.6E-07 52.9 2.5 23 119-141 30-52 (205)
428 2fu5_C RAS-related protein RAB 95.3 0.0055 1.9E-07 51.8 1.5 22 119-140 10-31 (183)
429 4tmk_A Protein (thymidylate ki 95.3 0.0099 3.4E-07 53.4 3.3 27 116-142 2-28 (213)
430 3a8t_A Adenylate isopentenyltr 95.2 0.0099 3.4E-07 57.4 3.4 27 116-142 39-65 (339)
431 2fh5_B SR-beta, signal recogni 95.2 0.0094 3.2E-07 51.9 3.0 23 119-141 9-31 (214)
432 2aka_B Dynamin-1; fusion prote 95.2 0.0089 3E-07 55.0 2.9 23 119-141 28-50 (299)
433 2gco_A H9, RHO-related GTP-bin 95.2 0.0085 2.9E-07 51.9 2.5 22 120-141 28-49 (201)
434 3def_A T7I23.11 protein; chlor 95.1 0.01 3.5E-07 54.3 3.2 23 119-141 38-60 (262)
435 2atx_A Small GTP binding prote 95.1 0.009 3.1E-07 51.1 2.6 22 119-140 20-41 (194)
436 2b6h_A ADP-ribosylation factor 95.1 0.0084 2.9E-07 51.7 2.4 21 119-139 31-51 (192)
437 3tmk_A Thymidylate kinase; pho 95.1 0.012 4E-07 53.2 3.3 33 115-148 3-35 (216)
438 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 56.4 3.5 25 117-141 3-27 (322)
439 3crm_A TRNA delta(2)-isopenten 95.1 0.011 3.7E-07 56.7 3.3 24 118-141 6-29 (323)
440 2hf9_A Probable hydrogenase ni 95.1 0.01 3.4E-07 52.3 2.8 24 118-141 39-62 (226)
441 3ld9_A DTMP kinase, thymidylat 95.1 0.013 4.3E-07 53.3 3.4 28 115-142 19-46 (223)
442 1h65_A Chloroplast outer envel 95.1 0.011 3.8E-07 54.3 3.1 23 119-141 41-63 (270)
443 2zts_A Putative uncharacterize 95.0 0.016 5.4E-07 51.4 4.0 25 114-138 27-51 (251)
444 1ypw_A Transitional endoplasmi 95.0 0.0036 1.2E-07 67.0 -0.4 44 110-155 504-547 (806)
445 1qvr_A CLPB protein; coiled co 95.0 0.017 5.7E-07 62.0 4.7 123 115-301 586-709 (854)
446 2g3y_A GTP-binding protein GEM 95.0 0.012 4.3E-07 52.3 3.2 22 119-140 39-60 (211)
447 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.013 4.5E-07 52.6 3.3 26 116-141 38-63 (262)
448 1p5z_B DCK, deoxycytidine kina 95.0 0.0078 2.7E-07 55.0 1.8 28 115-142 22-49 (263)
449 2r62_A Cell division protease 94.9 0.0026 9E-08 57.9 -1.5 32 107-140 36-67 (268)
450 3umf_A Adenylate kinase; rossm 94.9 0.011 3.7E-07 53.5 2.6 27 113-139 25-51 (217)
451 4djt_A GTP-binding nuclear pro 94.9 0.0052 1.8E-07 53.7 0.5 23 119-141 13-35 (218)
452 2yc2_C IFT27, small RAB-relate 94.9 0.0053 1.8E-07 52.8 0.4 22 119-140 22-43 (208)
453 4dcu_A GTP-binding protein ENG 94.9 0.01 3.6E-07 58.9 2.6 22 119-140 25-46 (456)
454 2hup_A RAS-related protein RAB 94.9 0.012 4E-07 51.2 2.6 23 119-141 31-53 (201)
455 3cpj_B GTP-binding protein YPT 94.8 0.013 4.4E-07 51.7 2.8 23 119-141 15-37 (223)
456 2v3c_C SRP54, signal recogniti 94.8 0.0031 1.1E-07 62.8 -1.4 35 118-152 100-134 (432)
457 2x77_A ADP-ribosylation factor 94.8 0.0082 2.8E-07 51.1 1.4 22 118-139 23-44 (189)
458 3euj_A Chromosome partition pr 94.8 0.025 8.4E-07 57.1 5.0 78 224-317 377-464 (483)
459 4gzl_A RAS-related C3 botulinu 94.8 0.013 4.4E-07 51.0 2.5 21 119-139 32-52 (204)
460 3n70_A Transport activator; si 94.7 0.014 4.9E-07 48.4 2.6 28 116-143 23-50 (145)
461 3q3j_B RHO-related GTP-binding 94.7 0.014 4.9E-07 51.3 2.8 22 119-140 29-50 (214)
462 3dm5_A SRP54, signal recogniti 94.7 0.012 4.2E-07 58.7 2.5 34 116-149 99-132 (443)
463 2j0v_A RAC-like GTP-binding pr 94.6 0.014 4.8E-07 50.6 2.5 22 119-140 11-32 (212)
464 3foz_A TRNA delta(2)-isopenten 94.5 0.019 6.4E-07 54.9 3.3 25 117-141 10-34 (316)
465 2chg_A Replication factor C sm 94.5 0.019 6.5E-07 49.2 3.0 23 119-141 40-62 (226)
466 4hlc_A DTMP kinase, thymidylat 94.4 0.023 7.7E-07 50.6 3.4 26 117-142 2-27 (205)
467 3sr0_A Adenylate kinase; phosp 94.4 0.023 7.8E-07 50.7 3.2 22 119-140 2-23 (206)
468 2v1u_A Cell division control p 94.3 0.016 5.5E-07 54.7 2.3 28 115-142 42-69 (387)
469 2orw_A Thymidine kinase; TMTK, 94.3 0.025 8.7E-07 49.3 3.3 53 251-318 76-138 (184)
470 3syl_A Protein CBBX; photosynt 94.2 0.025 8.6E-07 52.2 3.3 26 116-141 66-91 (309)
471 1puj_A YLQF, conserved hypothe 94.2 0.03 1E-06 52.3 3.8 30 117-146 120-149 (282)
472 3eph_A TRNA isopentenyltransfe 94.1 0.026 9E-07 55.7 3.3 24 118-141 3-26 (409)
473 3uk6_A RUVB-like 2; hexameric 94.0 0.024 8.3E-07 53.7 2.9 37 115-151 68-104 (368)
474 3p32_A Probable GTPase RV1496/ 94.0 0.019 6.6E-07 55.1 2.2 27 116-142 78-104 (355)
475 3th5_A RAS-related C3 botulinu 93.1 0.0096 3.3E-07 51.5 0.0 21 119-139 32-52 (204)
476 3gj0_A GTP-binding nuclear pro 93.9 0.018 6.1E-07 50.5 1.6 21 120-140 18-39 (221)
477 3pvs_A Replication-associated 93.9 0.016 5.4E-07 57.8 1.3 40 109-148 40-81 (447)
478 1wxq_A GTP-binding protein; st 93.8 0.027 9.3E-07 55.2 2.9 23 119-141 2-24 (397)
479 2hjg_A GTP-binding protein ENG 93.8 0.025 8.5E-07 55.8 2.6 22 119-140 5-26 (436)
480 1d2n_A N-ethylmaleimide-sensit 93.8 0.031 1.1E-06 50.9 3.1 26 115-140 62-87 (272)
481 1ofh_A ATP-dependent HSL prote 93.7 0.032 1.1E-06 51.1 2.9 25 117-141 50-74 (310)
482 3r7w_A Gtpase1, GTP-binding pr 93.7 0.041 1.4E-06 51.6 3.7 24 117-140 3-26 (307)
483 2bjv_A PSP operon transcriptio 93.6 0.047 1.6E-06 49.5 3.9 28 116-143 28-55 (265)
484 1xwi_A SKD1 protein; VPS4B, AA 93.6 0.034 1.2E-06 52.6 3.0 26 116-141 44-69 (322)
485 2vhj_A Ntpase P4, P4; non- hyd 93.6 0.042 1.4E-06 52.8 3.6 28 112-139 118-145 (331)
486 2x2e_A Dynamin-1; nitration, h 93.6 0.023 7.8E-07 54.4 1.8 23 119-141 33-55 (353)
487 2qby_B CDC6 homolog 3, cell di 93.5 0.038 1.3E-06 52.4 3.3 25 117-141 45-69 (384)
488 3hws_A ATP-dependent CLP prote 93.5 0.035 1.2E-06 53.0 3.0 25 117-141 51-75 (363)
489 1knx_A Probable HPR(Ser) kinas 93.5 0.066 2.3E-06 51.0 4.9 37 102-139 133-169 (312)
490 2qgz_A Helicase loader, putati 93.5 0.043 1.5E-06 51.7 3.5 25 117-141 152-176 (308)
491 3l0i_B RAS-related protein RAB 93.5 0.0062 2.1E-07 52.6 -2.2 23 119-141 35-57 (199)
492 3ec1_A YQEH GTPase; atnos1, at 93.4 0.034 1.2E-06 53.9 2.8 25 116-140 161-185 (369)
493 3gmt_A Adenylate kinase; ssgci 93.4 0.043 1.5E-06 50.1 3.3 23 118-140 9-31 (230)
494 2qen_A Walker-type ATPase; unk 93.4 0.045 1.5E-06 50.8 3.5 26 116-141 30-55 (350)
495 1lnz_A SPO0B-associated GTP-bi 93.3 0.043 1.5E-06 52.8 3.2 32 109-140 150-181 (342)
496 2qpt_A EH domain-containing pr 93.3 0.036 1.2E-06 56.7 2.9 23 119-141 67-89 (550)
497 1x6v_B Bifunctional 3'-phospho 93.3 0.044 1.5E-06 57.1 3.5 26 116-141 51-76 (630)
498 3t15_A Ribulose bisphosphate c 93.3 0.043 1.5E-06 51.2 3.1 24 118-141 37-60 (293)
499 3eie_A Vacuolar protein sortin 93.2 0.049 1.7E-06 51.3 3.4 26 116-141 50-75 (322)
500 3d8b_A Fidgetin-like protein 1 93.2 0.048 1.6E-06 52.3 3.4 27 115-141 115-141 (357)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-61 Score=474.35 Aligned_cols=240 Identities=32% Similarity=0.545 Sum_probs=212.1
Q ss_pred CCcceEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 87 DGDVLIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
...+||+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 46999999999999999999999999999999999999999999999999987643222
Q ss_pred h-hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 E-ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~-~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
. ..+++||||||++.+|+.+||+||+.+++... +.+.++..+++.++|+.+||.++.+++|.+|||||||||+|||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1 12346999999999999999999999987543 456677788899999999999999999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++++.++||||++|++|+
T Consensus 179 ~~-------~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g----------~Tii~vTHdl~~~~~~aDrv~vl~~G~ 241 (366)
T 3tui_C 179 AS-------NPKVLLCDQATSALDPATTRSILELLKDINRRLG----------LTILLITHEMDVVKRICDCVAVISNGE 241 (366)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC----------CEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hc-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 96 69999999999999999999999999999865 5 699999999999999999999999999
Q ss_pred EEEeeccccccc-CCcHHHHHHhcC
Q 018638 321 IVWQGMTHEFTS-SSNPIVQQFASG 344 (352)
Q Consensus 321 iv~~g~~~~~~~-~~~~~~~~~~~~ 344 (352)
|++.|++++++. +.+++++.|+..
T Consensus 242 iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 242 LIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp EEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred EEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 999999999764 567777777654
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5e-61 Score=471.40 Aligned_cols=236 Identities=30% Similarity=0.481 Sum_probs=207.4
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..........+++|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 36999999999999999999999999999999999999999999999999999999999999998732111111123469
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+||.+||+|||.|++... ....++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~------ 155 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP------ 155 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999987432 34455667889999999999999999999999999999999999996
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||++||+..+.++++.|.++.++ | +|+|+||||++++..+||||++|++|+|++.|+++
T Consensus 156 -~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g----------~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 156 -DPELILLDEPFSALDEQLRRQIREDMIAALRANG----------KSAVFVSHDREEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp -CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred -CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHH
Confidence 69999999999999999999999988887654 5 69999999999999999999999999999999999
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
+++. +.+..+..|+.
T Consensus 225 el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 225 ELYRQPADLDAALFIG 240 (359)
T ss_dssp HHHHSCSCHHHHHHHS
T ss_pred HHHhCcccHHHHHhcc
Confidence 9764 44566666654
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-60 Score=472.06 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=211.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~~---~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PA---ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GG---GSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-HH---HCCEE
Confidence 599999999999999999999999999999999999999999999999999999999999999986532 21 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+||.+||+|||.|++... +.++++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~------- 150 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA------- 150 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-------
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999987543 45677778889999999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+.++++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG----------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 69999999999999999999999999999765 6 699999999999999999999999999999999999
Q ss_pred cc-cCCcHHHHHHhc
Q 018638 330 FT-SSSNPIVQQFAS 343 (352)
Q Consensus 330 ~~-~~~~~~~~~~~~ 343 (352)
++ .+.+.++..|+.
T Consensus 221 l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 221 LYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHCCSBHHHHHHSS
T ss_pred HHhCCccHHHHHhcC
Confidence 76 466788888764
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.4e-60 Score=445.54 Aligned_cols=236 Identities=35% Similarity=0.556 Sum_probs=205.8
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC-CCChhhhccce
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG-LISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~-~~~~~~~~~~~ 168 (352)
.+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....... +++
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV-REE 101 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH-HHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH-hCc
Confidence 47999999999998899999999999999999999999999999999999999999999999998741 0111111 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+|+.+||+||+.++.....+....+..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~----- 176 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM----- 176 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-----
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC-----
Confidence 999999999999999999999864222234455556778999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTH 328 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~ 328 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++||||++|++|++++.|+++
T Consensus 177 --~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 177 --EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG----------MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp --CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred --CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 699999999999999999999999999998766 59999999999999999999999999999999988
Q ss_pred cccc-CCcHHHHHHhc
Q 018638 329 EFTS-SSNPIVQQFAS 343 (352)
Q Consensus 329 ~~~~-~~~~~~~~~~~ 343 (352)
++.. +..+.++.++.
T Consensus 245 ~~~~~~~~~~~~~~~~ 260 (263)
T 2olj_A 245 DLFDRPQHERTKAFLS 260 (263)
T ss_dssp HHHHSCCSHHHHHHHT
T ss_pred HHHhCcccHHHHHHHH
Confidence 8764 34556666653
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.1e-60 Score=445.06 Aligned_cols=236 Identities=33% Similarity=0.531 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCC----------CC
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAG----------LI 159 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~----------~~ 159 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 47999999999999899999999999999999999999999999999999999999999999998741 11
Q ss_pred Chh-hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHH
Q 018638 160 SDE-EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 160 ~~~-~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaI 237 (352)
... ...+++||||||++.+|+.+||+||+.++.....+.+..+..+++.++++.+||.+. .++++.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 111 111236999999999999999999999864222234455556778999999999998 999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+||||++|+
T Consensus 165 AraL~~-------~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 165 ARALAM-------EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG----------KTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp HHHHHT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHhc-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999997 699999999999999999999999999998766 599999999999999999999999
Q ss_pred CCeEEEeeccccccc-CCcHHHHHHh
Q 018638 318 EGKIVWQGMTHEFTS-SSNPIVQQFA 342 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~-~~~~~~~~~~ 342 (352)
+|++++.|+++++.. +..+.+..++
T Consensus 228 ~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 228 QGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp TTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred CCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 999999999888754 3345555554
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-59 Score=436.43 Aligned_cols=223 Identities=36% Similarity=0.544 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh--h
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE--I 164 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~--~ 164 (352)
||+++||+|+|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ .
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999999865432221 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhc--CCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYEN--SKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~--~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL 241 (352)
.+.+||||||++.+|+.+||+||+.+++... .....++..+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2235999999999999999999999976432 134556667788999999999875 5999999999999999999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+. +|++|||||||+|||+.++..++++|++++++ | .|||+||||++.+ .+||||++|++|+
T Consensus 161 ~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHd~~~~-~~~d~i~~l~~G~ 222 (235)
T 3tif_A 161 AN-------NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG----------KTVVVVTHDINVA-RFGERIIYLKDGE 222 (235)
T ss_dssp TT-------CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred Hc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 97 69999999999999999999999999999765 6 5999999999965 7899999999999
Q ss_pred EEEeecccccc
Q 018638 321 IVWQGMTHEFT 331 (352)
Q Consensus 321 iv~~g~~~~~~ 331 (352)
|++.++++++.
T Consensus 223 i~~~~~~~~~~ 233 (235)
T 3tif_A 223 VEREEKLRGFD 233 (235)
T ss_dssp EEEEEECC---
T ss_pred EEEEcChhhhc
Confidence 99999877753
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.1e-60 Score=448.01 Aligned_cols=225 Identities=30% Similarity=0.537 Sum_probs=198.5
Q ss_pred cceEEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 89 DVLIDCRNVYKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 89 ~~~l~~~nls~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.++|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..........++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 358999999999975 4699999999999999999999999999999999999999999999999987421111111234
Q ss_pred eEEEEecCC--CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 168 RIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 168 ~ig~v~Q~~--~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
+||||||++ .+| .+||+||+.|+... .+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-- 160 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-- 160 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT--
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc--
Confidence 699999997 345 68999999998753 345667777889999999999999999999999999999999999996
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++ ++| .|||+||||++++..+||||++|++|+++++
T Consensus 161 -----~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 161 -----EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG----------ITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp -----CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred -----CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 699999999999999999999999999997 556 5999999999999999999999999999999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99988754
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.5e-59 Score=458.99 Aligned_cols=234 Identities=40% Similarity=0.671 Sum_probs=209.8
Q ss_pred CcceEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 88 GDVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 88 ~~~~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
+..+|+++||+|+| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... . .+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~---~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P---QK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G---GG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h---hh
Confidence 34689999999999 8888999999999999999999999999999999999999999999999999975432 1 13
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++||||||++.+|+.+||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~--- 162 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP--- 162 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT---
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc---
Confidence 46999999999999999999999987533 34556667889999999999999999999999999999999999996
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 247 KESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+|++|||||||++||+..+..+++.|+++.++ | .|+|+||||++++..+||||++|++|+|++.|
T Consensus 163 ----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 163 ----RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG----------VTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp ----CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred ----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 69999999999999999999999999999765 6 59999999999999999999999999999999
Q ss_pred ccccccc-CCcHHHHHHhc
Q 018638 326 MTHEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~ 343 (352)
++++++. +.+..+..|+.
T Consensus 229 ~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 229 TPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp CHHHHHHSCSSHHHHHHTT
T ss_pred CHHHHHhCccchHHHHhcC
Confidence 9998764 44566776653
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.3e-59 Score=429.92 Aligned_cols=218 Identities=34% Similarity=0.490 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~ 167 (352)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....... ..++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4799999999999889999999999999999999999999999999999999999999999999975432111 11123
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+||||||++.+|+.+||+||+.++.... +....+..+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~---- 157 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN---- 157 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT----
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc----
Confidence 6999999999999999999999876433 24445556778999999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+.++..++++|++++++| .|||+||||++++ .+||++++|++|+++++|+
T Consensus 158 ---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g----------~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 158 ---EPILLFADEPTGNLDSANTKRVMDIFLKINEGG----------TSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 699999999999999999999999999998766 5999999999998 7899999999999999884
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-59 Score=458.67 Aligned_cols=231 Identities=33% Similarity=0.570 Sum_probs=206.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PK---YREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hh---hCcEE
Confidence 599999999999999999999999999999999999999999999999999999999999999976432 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++.. .+.+.++..+++.++++.+||.++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~------- 150 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRA-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK------- 150 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSS-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 999999999999999999997632 223344456778999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG----------ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 221 l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 221 VYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHSCSBHHHHHHSS
T ss_pred HHhCcccHHHHHHhC
Confidence 764 45667777764
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3e-59 Score=441.90 Aligned_cols=236 Identities=25% Similarity=0.363 Sum_probs=203.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... .... ++.+
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~-~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKAL-ARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHH-HHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHH-hheE
Confidence 5899999999999999999999999999999999999999999999999999999999999999986542 2222 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+|+||++.+++.+||+||+.++...+ ...+..+++.++++.+++.++.++++.+|||||||||+|||||++.|+ ..
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-~~ 163 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-PQ 163 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-SS
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-cC
Confidence 99999998877899999999976432 222335678899999999999999999999999999999999996100 00
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+|++|||||||+|||+.++..++++|++++++++ +|||+||||++++..+||||++|++|++++.|++++
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~---------~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP---------LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS---------EEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC---------CEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 14999999999999999999999999999987642 699999999999999999999999999999999988
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+.. .+.+.+++
T Consensus 235 ~~~--~~~l~~~~ 245 (266)
T 4g1u_C 235 VLN--AETLTQWY 245 (266)
T ss_dssp HCC--HHHHHHHC
T ss_pred HhC--cHHHHHHh
Confidence 764 23445554
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-59 Score=458.46 Aligned_cols=231 Identities=35% Similarity=0.566 Sum_probs=208.4
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PK---DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-Hh---HCcEE
Confidence 599999999999888999999999999999999999999999999999999999999999999976432 21 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 150 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK------- 150 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999987433 34556667789999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG----------ITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC----------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 221 ~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 221 VYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHSCSBHHHHHHSB
T ss_pred HHhCccchHHHHHcC
Confidence 764 45667777764
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-59 Score=441.33 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=197.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK-EPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHHT
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHHHhCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999987543 222222336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhh-cCC-----------CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYE-NSK-----------MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~-~~~-----------~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
||||||++.+|+.+||+||+.++... ..+ ....+..+++.++++.+||.+..++++.+|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999987532 111 223344567889999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+||||++|
T Consensus 164 iAraL~~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 164 IGRALMT-------NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG----------ITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp HHHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCSTTGGGCSEEEEE
T ss_pred HHHHHHc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEE
Confidence 9999997 699999999999999999999999999998766 59999999999999999999999
Q ss_pred eCCeEEEeecccc
Q 018638 317 YEGKIVWQGMTHE 329 (352)
Q Consensus 317 ~~G~iv~~g~~~~ 329 (352)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999998888
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=7.7e-59 Score=458.39 Aligned_cols=235 Identities=33% Similarity=0.537 Sum_probs=208.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...... ....+++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 59999999999999999999999999999999999999999999999999999999999999987430000 0011346
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
||||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~----- 156 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR----- 156 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-----
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999987433 34566667789999999999999999999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++
T Consensus 157 --~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 157 --KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG----------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSP 224 (372)
T ss_dssp --CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred --CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC----------CEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 69999999999999999999999999999765 6 5999999999999999999999999999999999
Q ss_pred ccccc-CCcHHHHHHhc
Q 018638 328 HEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 328 ~~~~~-~~~~~~~~~~~ 343 (352)
++++. +.+.++..|+.
T Consensus 225 ~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 225 DEVYDKPANTFVAGFIG 241 (372)
T ss_dssp HHHHHSCSBHHHHHHSS
T ss_pred HHHHhCcccHHHHHHhC
Confidence 99764 45667777764
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5e-59 Score=433.66 Aligned_cols=224 Identities=28% Similarity=0.483 Sum_probs=198.2
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.+||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+.+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK-PAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTC-CHHHHHHTT
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-CHHHHHhCC
Confidence 3589999999999998999999999999999999999999999999999999999999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVG-LKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g-L~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
||||||++.+|+.+||+||+.++.... ...++..+++.++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~---- 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS---- 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT----
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 999999999999999999999864211 223345567888999995 9888999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++.++||||++|++|++++.|++
T Consensus 157 ---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 157 ---RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG----------TTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred ---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC----------CEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 699999999999999999999999999997766 5999999999999999999999999999999988
Q ss_pred ccccc
Q 018638 328 HEFTS 332 (352)
Q Consensus 328 ~~~~~ 332 (352)
+++..
T Consensus 224 ~~~~~ 228 (240)
T 1ji0_A 224 SELLD 228 (240)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88754
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.9e-59 Score=458.16 Aligned_cols=231 Identities=32% Similarity=0.525 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .. +++||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~---~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PK---DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GG---GGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hh---hCcEE
Confidence 599999999999989999999999999999999999999999999999999999999999999976432 11 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||.++.+++|++|||||||||+|||||+.
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~------- 158 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV------- 158 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999976322 34556667789999999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK----------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+.++..|+.
T Consensus 229 l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 229 VYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHCCSBHHHHHHSS
T ss_pred HHhCcccHHHHHHhC
Confidence 764 45667777764
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.4e-59 Score=456.12 Aligned_cols=235 Identities=36% Similarity=0.543 Sum_probs=207.1
Q ss_pred eEEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC-hhhhccc
Q 018638 91 LIDCRNVYKSFGEKH--ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS-DEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~~--~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~-~~~~~~~ 167 (352)
+|+++||+|+|+++. +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .....++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 599999999998887 9999999999999999999999999999999999999999999999998743100 0011134
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+||||||++.+|+++||+||+.|++... +.+.++..+++.++++.+||+++.+++|.+|||||||||+|||||+.
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~---- 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK---- 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT----
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 6999999999999999999999986432 34556667789999999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
+|++|||||||++||+..+..+++.|++++++ | .|+|+||||++++..+||||++|++|+|++.|+
T Consensus 158 ---~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g----------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 158 ---DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG----------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (353)
T ss_dssp ---CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC----------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred ---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 69999999999999999999999999999765 6 599999999999999999999999999999999
Q ss_pred cccccc-CCcHHHHHHhc
Q 018638 327 THEFTS-SSNPIVQQFAS 343 (352)
Q Consensus 327 ~~~~~~-~~~~~~~~~~~ 343 (352)
+++++. +.+..+..|+.
T Consensus 225 ~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 225 PEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHHHHSCSSHHHHHHHS
T ss_pred HHHHHhCcccHHHHHhcC
Confidence 999764 44566777764
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.9e-58 Score=451.88 Aligned_cols=227 Identities=30% Similarity=0.556 Sum_probs=202.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+|+|+++ +|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ... +++||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~---~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPE---KHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHH---HHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chh---hCcEE
Confidence 58999999999988 99999999999999999999999999999999999999999999999997542 221 23699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+++||+||+.|++.... .... +++.++++.++|+++.+++|.+|||||||||+|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~-~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~------- 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKK-IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT------- 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHC-CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-------
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcC-CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 99999999999999999999874332 2222 568899999999999999999999999999999999996
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||++||+..+..+.+.|++++++ | .|+|+||||++++..+||||++|++|+|++.|++++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g----------~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNK----------LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT----------CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999765 5 599999999999999999999999999999999999
Q ss_pred ccc-CCcHHHHHHhc
Q 018638 330 FTS-SSNPIVQQFAS 343 (352)
Q Consensus 330 ~~~-~~~~~~~~~~~ 343 (352)
++. +.+..+..|+.
T Consensus 215 ~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 215 IFEKPVEGRVASFVG 229 (348)
T ss_dssp HHSSCCTTHHHHHHC
T ss_pred HHhCcccHHHHHhcC
Confidence 764 44566777764
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-58 Score=433.06 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=198.6
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
++|+++||+|+|+++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..... +++|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~--~~~~~-~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE--EPHEV-RKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT--CHHHH-HTTE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc--cHHHH-hhcE
Confidence 46999999999999999999999999999999999999999999999999999999999999998753 12222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+|+.+||+||+.++...+ +...++..+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~------ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV------ 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT------
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999865332 23444455678899999999999999999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++| .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 164 -~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 164 -NPRLAILDEPTSGLDVLNAREVRKILKQASQEG----------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp -CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred -CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHH
Confidence 699999999999999999999999999998766 599999999999999999999999999999998888
Q ss_pred cc
Q 018638 330 FT 331 (352)
Q Consensus 330 ~~ 331 (352)
+.
T Consensus 233 ~~ 234 (256)
T 1vpl_A 233 LK 234 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-57 Score=423.71 Aligned_cols=225 Identities=32% Similarity=0.500 Sum_probs=196.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
||+++||+++|++ +|+||||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .+++||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PP---ERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CT---TTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-ch---hhCcEE
Confidence 5899999999986 49999999999 99999999999999999999999999999999999987532 11 133699
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
||||++.+|+.+||+||+.++.... ......+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------- 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI------- 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-------
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-------
Confidence 9999999999999999999865321 112225678899999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecccc
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~ 329 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++++..+|||+++|++|++++.|++++
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD----------VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT----------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 69999999999999999999999999999754 6 599999999999999999999999999999998888
Q ss_pred cccCCcHHHHHHh
Q 018638 330 FTSSSNPIVQQFA 342 (352)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (352)
+....++++..++
T Consensus 214 ~~~~~~~~~~~~~ 226 (240)
T 2onk_A 214 LFSAKNGEVAEFL 226 (240)
T ss_dssp HHHSCCSSHHHHG
T ss_pred HHhCchHHHHHHh
Confidence 7543244555554
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.2e-57 Score=431.92 Aligned_cols=229 Identities=27% Similarity=0.410 Sum_probs=193.8
Q ss_pred CCCCcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC--CCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA--GLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~--~~~~~~ 162 (352)
|+...++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .. ...
T Consensus 15 ~~~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~ 93 (279)
T 2ihy_A 15 PRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY-SAE 93 (279)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-CHH
T ss_pred CCCCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-CHH
Confidence 334556899999999999999999999999999999999999999999999999999999999999998764 22 122
Q ss_pred hhccceEEEEecCCCC-C-CCCCHHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAAL-F-DSLTVRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l-~-~~lTV~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.. +++||||||++.+ + +.+||+||+.++.... .....++..+++.++++.+||.++.++++.+|||||||||+|
T Consensus 94 ~~-~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 94 TV-RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HH-HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HH-cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 22 3369999999754 3 3469999999864211 111123345678899999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEE--EEEcCCHHHHHhhcCEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASY--VVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tv--IivTHdl~~i~~~aDrv~v 315 (352)
||||+. +|++|||||||+|||+.++..++++|++++++| .|| |+||||++++..+||||++
T Consensus 173 AraL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tv~~iivtHd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 173 ARALMG-------QPQVLILDEPAAGLDFIARESLLSILDSLSDSY----------PTLAMIYVTHFIEEITANFSKILL 235 (279)
T ss_dssp HHHHHT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC----------TTCEEEEEESCGGGCCTTCCEEEE
T ss_pred HHHHhC-------CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC----------CEEEEEEEecCHHHHHHhCCEEEE
Confidence 999997 699999999999999999999999999997766 489 9999999999999999999
Q ss_pred EeCCeEEEeeccccccc
Q 018638 316 LYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~ 332 (352)
|++|++++.|+++++..
T Consensus 236 l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp EETTEEEEEEEHHHHCS
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999998888753
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.9e-57 Score=424.97 Aligned_cols=217 Identities=37% Similarity=0.590 Sum_probs=191.4
Q ss_pred eEEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFG--E---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~--~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
||+++||+++|+ + +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. . ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~-~~- 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---Y-EI- 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---H-HH-
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---H-Hh-
Confidence 699999999997 4 679999999999999999999999999999999999999999999999998642 1 22
Q ss_pred cceEEEEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--cccccCCCCCChHHHHHHHHHHHHh
Q 018638 166 GLRIGLVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK--GVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 166 ~~~ig~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
+.+||||||++ .+++.+||+||+.++.... ...++..+++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 33699999996 4556689999999865321 12222345688899999999 9999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
. +|++|||||||+|||+.++..++++|++++++| .|||+||||++.+..+|||+++|++|+++
T Consensus 155 ~-------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 155 H-------EPDILILDEPLVGLDREGKTDLLRIVEKWKTLG----------KTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp T-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred c-------CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999997666 59999999999999999999999999999
Q ss_pred Eeecccccc
Q 018638 323 WQGMTHEFT 331 (352)
Q Consensus 323 ~~g~~~~~~ 331 (352)
+.|+++++.
T Consensus 218 ~~g~~~~~~ 226 (266)
T 2yz2_A 218 FDGTRMEFL 226 (266)
T ss_dssp EEEEHHHHH
T ss_pred EeCCHHHHh
Confidence 999887764
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.5e-57 Score=420.69 Aligned_cols=220 Identities=26% Similarity=0.418 Sum_probs=188.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
||+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~-~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL-SPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS-CHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC-CHHHHHhCc
Confidence 69999999999998999999999999999999999999999999999999 789999999999997543 222222335
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhc-C-CCCHHHHHHHHHHHHHHcCC-CcccccCCCC-CChHHHHHHHHHHHHhcc
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYEN-S-KMRDEQISELVKENLAAVGL-KGVEDRLPSE-LSGGMKKRVALARSIIFD 244 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~-~-~~~~~~~~~~v~~~l~~~gL-~~~~~~~~~~-LSGGqrQRvaIArAL~~~ 244 (352)
++|+||++.+|+.+||+||+.++.... . .....+..+++.++++.+|+ .++.++++.+ |||||||||+|||||+.
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~- 160 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL- 160 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH-
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc-
Confidence 899999999999999999998865321 1 12334445678899999999 5889999999 99999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~~G~iv~ 323 (352)
+|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+ ||||++|++|++++
T Consensus 161 ------~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 161 ------EPTYAVLDETDSGLDIDALKVVARGVNAMRGPN----------FGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp ------CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT----------CEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred ------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 599999999999999999999999999996555 5999999999999988 59999999999999
Q ss_pred eeccc
Q 018638 324 QGMTH 328 (352)
Q Consensus 324 ~g~~~ 328 (352)
.|+++
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 99776
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-56 Score=420.56 Aligned_cols=224 Identities=29% Similarity=0.428 Sum_probs=192.4
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCceEEEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--LAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++... ......+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~-~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL-SPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS-CHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC-CHHHHhh
Confidence 4579999999999989999999999999999999999999999999999999 478999999999987543 2222222
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhh----cC--CCCHHHHHHHHHHHHHHcCCC-cccccCCC-CCChHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYE----NS--KMRDEQISELVKENLAAVGLK-GVEDRLPS-ELSGGMKKRVALA 238 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~----~~--~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~-~LSGGqrQRvaIA 238 (352)
.+|+||||++.+|+.+||.||+.+.... .. ..+.++..+++.++++.+||. ...++++. +|||||||||+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 3599999999999999999999875421 11 123445566788999999996 57888987 5999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh-cCEEEEEe
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA-VDRLIFLY 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~-aDrv~vL~ 317 (352)
|||+. +|++|||||||+|||+.++..++++|++++++| .|||+||||++++..+ |||+++|+
T Consensus 177 raL~~-------~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~~d~v~~l~ 239 (267)
T 2zu0_C 177 QMAVL-------EPELCILDESDSGLDIDALKVVADGVNSLRDGK----------RSFIIVTHYQRILDYIKPDYVHVLY 239 (267)
T ss_dssp HHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS----------CEEEEECSSGGGGGTSCCSEEEEEE
T ss_pred HHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeeCHHHHHhhcCCEEEEEE
Confidence 99997 599999999999999999999999999986555 5999999999999886 89999999
Q ss_pred CCeEEEeeccccc
Q 018638 318 EGKIVWQGMTHEF 330 (352)
Q Consensus 318 ~G~iv~~g~~~~~ 330 (352)
+|++++.|+++++
T Consensus 240 ~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 240 QGRIVKSGDFTLV 252 (267)
T ss_dssp TTEEEEEECTTHH
T ss_pred CCEEEEEcCHHHH
Confidence 9999999987765
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.7e-55 Score=411.95 Aligned_cols=210 Identities=22% Similarity=0.339 Sum_probs=188.4
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+||+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +.+
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~---------------~~~ 67 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV---------------YQS 67 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE---------------CSC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---------------ecc
Confidence 4799999999998 888999999999999999999999999999999999999999999982 125
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCC---CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSK---MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDN 245 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~ 245 (352)
||||||++.+++.+||+||+.++.....+ .......+++.++++.+||.++.++++.+|||||||||+|||||+.
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-- 145 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-- 145 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT--
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc--
Confidence 99999999998889999999987532211 1123345678899999999999999999999999999999999997
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEe
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 324 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|++++++ | .|||++|||++++..+|||+++|++|+ ++.
T Consensus 146 -----~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 146 -----ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN----------MTVVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp -----TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSC----------CEEEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred -----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC----------CEEEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 69999999999999999999999999999876 5 599999999999999999999999999 999
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 210 g~~~~~~~ 217 (253)
T 2nq2_C 210 GETRNILT 217 (253)
T ss_dssp EEHHHHCC
T ss_pred CCHHHHhC
Confidence 98888753
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-55 Score=412.13 Aligned_cols=214 Identities=31% Similarity=0.512 Sum_probs=183.5
Q ss_pred eEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
-|+++||+|+| +++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .... +.+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~-~~~~-~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-PNWL-RRQ 84 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH-HHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH-Hhc
Confidence 39999999999 4678999999999999999999999999999999999999999999999999976432 2222 236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccccc-----------CCCCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDR-----------LPSELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSGGqrQRvaI 237 (352)
||||||++.+|+ .||+||+.++.. .... +++.++++.+++.++.++ ++.+|||||||||+|
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANP---GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCT---TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEEEeCCCcccc-ccHHHHHhccCC---CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 999999999987 699999988531 1222 345667777777665554 458999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..++++|+++. +| .|||+||||++.+.. ||||++|+
T Consensus 157 AraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g----------~tviivtH~~~~~~~-~d~v~~l~ 217 (247)
T 2ff7_A 157 ARALVN-------NPKILIFDEATSALDYESEHVIMRNMHKIC-KG----------RTVIIIAHRLSTVKN-ADRIIVME 217 (247)
T ss_dssp HHHHTT-------CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT----------SEEEEECSSGGGGTT-SSEEEEEE
T ss_pred HHHHhc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC----------CEEEEEeCCHHHHHh-CCEEEEEE
Confidence 999997 699999999999999999999999999995 45 599999999999865 99999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|++++.|+++++...
T Consensus 218 ~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 218 KGKIVEQGKHKELLSE 233 (247)
T ss_dssp TTEEEEEECHHHHHTS
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999988887654
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.1e-56 Score=419.76 Aligned_cols=226 Identities=25% Similarity=0.423 Sum_probs=190.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ +.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..... +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~~~~~-~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY-DHHYL-H 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-CHHHH-H
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-CHHHH-h
Confidence 47999999999986 7899999999999999999999999999999999999999999999999987532 22222 2
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHH-----HHHHHHHHHHc--CCCcccccCCCCCChHHHHHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQI-----SELVKENLAAV--GLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.+||||||++.+|+ .||+|||.++.... ...++. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 36999999999987 59999999864211 111211 12345678888 7888889999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+. +|+||||||||++||+.++..++++|+++.++ | .|||+||||++++.. ||||++|++
T Consensus 170 aL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g----------~tviivtHd~~~~~~-~d~v~~l~~ 231 (271)
T 2ixe_A 170 ALIR-------KPRLLILDNATSALDAGNQLRVQRLLYESPEWAS----------RTVLLITQQLSLAER-AHHILFLKE 231 (271)
T ss_dssp HHTT-------CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTT----------SEEEEECSCHHHHTT-CSEEEEEET
T ss_pred HHhc-------CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcC----------CEEEEEeCCHHHHHh-CCEEEEEEC
Confidence 9997 69999999999999999999999999998643 5 599999999999875 999999999
Q ss_pred CeEEEeecccccccCCcHHH
Q 018638 319 GKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~ 338 (352)
|++++.|+++++......+.
T Consensus 232 G~i~~~g~~~~l~~~~~~~~ 251 (271)
T 2ixe_A 232 GSVCEQGTHLQLMERGGCYR 251 (271)
T ss_dssp TEEEEEECHHHHHHHTSHHH
T ss_pred CEEEEECCHHHHHhCcHHHH
Confidence 99999998888764444443
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2e-55 Score=423.66 Aligned_cols=214 Identities=29% Similarity=0.480 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.|+++||+|+|+ ++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.... .... +.+|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-~~~~-r~~i 130 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-QASL-RSHI 130 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-HHHH-HHTE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-HHHH-hcce
Confidence 499999999995 578999999999999999999999999999999999999999999999999987643 2222 3369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRvaIA 238 (352)
|||||++.+|+ .||+|||.++... ... +++.++++.+++.++. .+.+.+|||||||||+||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~---~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVT---AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTT---CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhccc---CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 99999999996 5999999986421 222 2345566666665444 455579999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|+||||||||++||+.++..+++.|+++.+ + .|+|+||||++.+.. ||||++|++
T Consensus 203 RAL~~-------~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~----------~Tvi~itH~l~~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 203 RTILK-------APGIILLDEATSALDTSNERAIQASLAKVCA-N----------RTTIVVAHRLSTVVN-ADQILVIKD 263 (306)
T ss_dssp HHHHH-------CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T----------SEEEEECCSHHHHHT-CSEEEEEET
T ss_pred HHHHh-------CCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C----------CEEEEEEcChHHHHc-CCEEEEEEC
Confidence 99998 5999999999999999999999999999865 3 499999999999987 999999999
Q ss_pred CeEEEeecccccccC
Q 018638 319 GKIVWQGMTHEFTSS 333 (352)
Q Consensus 319 G~iv~~g~~~~~~~~ 333 (352)
|+|++.|++++++..
T Consensus 264 G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 264 GCIVERGRHEALLSR 278 (306)
T ss_dssp TEEEEEECHHHHHHH
T ss_pred CEEEEECCHHHHHhc
Confidence 999999998887654
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.4e-55 Score=409.19 Aligned_cols=213 Identities=26% Similarity=0.397 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.||+++||+++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++... ..... +.+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~-~~~~~-~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW-SATKL-ALHR 75 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS-CHHHH-HHHE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC-CHHHH-hceE
Confidence 47999999987 6999999999999999999999999999999999999999 9999999987532 22222 2369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
|||||++.+|+.+||+||+.++... ... .+++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~----- 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHD--KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI----- 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSS--TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH-----
T ss_pred EEECCCCccCCCCcHHHHHHHhhcc--CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC-----
Confidence 9999999999889999999885311 112 45678899999999999999999999999999999999984
Q ss_pred CCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 250 VEPE-------VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 250 ~~p~-------llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
|+ +|||||||+|||+.++..+.++|+++.++| .|||++|||++++..+|||+++|++|+++
T Consensus 145 --p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g----------~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 145 --TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG----------LAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp --CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred --CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88 999999999999999999999999997666 59999999999999999999999999999
Q ss_pred Eeeccccccc
Q 018638 323 WQGMTHEFTS 332 (352)
Q Consensus 323 ~~g~~~~~~~ 332 (352)
+.|+++++..
T Consensus 213 ~~g~~~~~~~ 222 (249)
T 2qi9_C 213 ASGRREEVLT 222 (249)
T ss_dssp EEEEHHHHSC
T ss_pred EeCCHHHHhc
Confidence 9998888753
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-55 Score=407.33 Aligned_cols=224 Identities=29% Similarity=0.524 Sum_probs=189.1
Q ss_pred eEEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y-~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
||+++||+++| +++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...... . .+.+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~-~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE-N-WRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS-C-CTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHH-H-HHhhE
Confidence 58999999999 667899999999999999999999999999999999999999999999999987543211 1 23369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+ .||+||+.+++. ..... +++.++++.+++.++.++. +.+|||||||||+||
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLE--GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTT--SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcccc-ccHHHHHhhhcc--CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 99999999987 599999988531 11222 3467788888887766554 579999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
|||++ +|++|||||||+|||+.++..+++.|+++. +| .|||+||||++.+. .||||++|++
T Consensus 152 ral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~----------~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 152 RAFLR-------NPKILMLDEATASLDSESESMVQKALDSLM-KG----------RTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp HHHHH-------CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT----------SEEEEECCSHHHHH-HCSEEEEEET
T ss_pred HHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC----------CEEEEEeCChHHHH-hCCEEEEEEC
Confidence 99997 599999999999999999999999999997 55 59999999999886 5999999999
Q ss_pred CeEEEeecccccccCCcHHHHHHhc
Q 018638 319 GKIVWQGMTHEFTSSSNPIVQQFAS 343 (352)
Q Consensus 319 G~iv~~g~~~~~~~~~~~~~~~~~~ 343 (352)
|++++.|+++++... .....+++.
T Consensus 213 G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 213 GQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp TEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred CEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 999999988887543 234455554
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-54 Score=396.04 Aligned_cols=202 Identities=21% Similarity=0.336 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|++ .+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. . .+.+|
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~--~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----K--VKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----G--GGGGE
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----h--hcCcE
Confidence 57999999999998 9999999999999999999999999999999999999999999999999863 1 13369
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
+||||++.+|+.+||+||+.++...+. .. .+ .+++.++++.+|+++. ++++.+|||||||||+|||||+.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~-~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~------ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYG-VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV------ 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTT-CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcC-Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh------
Confidence 999999999999999999998753322 11 11 3567889999999988 99999999999999999999997
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|++|||||||++||+.++..++++|++++++| .|||++|||++++..+||+|+++ +|+|
T Consensus 151 -~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g----------~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 151 -NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK----------GIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp -CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH----------SEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 699999999999999999999999999997665 59999999999999999997754 5665
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.2e-53 Score=402.09 Aligned_cols=219 Identities=26% Similarity=0.467 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++... ..... +
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-~~~~~-~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-NRNSI-R 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB-CHHHH-H
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc-CHHHH-h
Confidence 46999999999976 4699999999999999999999999999999999999987 89999999987532 22222 3
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHH
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRV 235 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRv 235 (352)
.+|+||||++.+|+ .||+||+.++.. .... +++.++++.+++.++ .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL---DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT---TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC---CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 46999999999987 699999988531 1222 335667777777543 2467889999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||+. +|++|||||||++||+.++..++++|+++.+ + .|||+||||++.+. .||||++
T Consensus 165 ~lAraL~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~----------~tviivtH~~~~~~-~~d~i~~ 225 (260)
T 2ghi_A 165 AIARCLLK-------DPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-N----------RTLIIIAHRLSTIS-SAESIIL 225 (260)
T ss_dssp HHHHHHHH-------CCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGST-TCSEEEE
T ss_pred HHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHhcC-C----------CEEEEEcCCHHHHH-hCCEEEE
Confidence 99999997 5999999999999999999999999999854 4 59999999999986 4999999
Q ss_pred EeCCeEEEeecccccccCCcHHH
Q 018638 316 LYEGKIVWQGMTHEFTSSSNPIV 338 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~~~~~~ 338 (352)
|++|++++.|+++++......+.
T Consensus 226 l~~G~i~~~g~~~~l~~~~~~~~ 248 (260)
T 2ghi_A 226 LNKGKIVEKGTHKDLLKLNGEYA 248 (260)
T ss_dssp EETTEEEEEECHHHHHHHTSHHH
T ss_pred EECCEEEEECCHHHHHhcChHHH
Confidence 99999999998888764434443
No 33
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-52 Score=436.01 Aligned_cols=278 Identities=24% Similarity=0.338 Sum_probs=216.0
Q ss_pred ccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 018638 6 SSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPE 85 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
....+.+...+..++.++..++... ........+.+|+......|+........ .++
T Consensus 278 ~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------------------~~~ 334 (595)
T 2yl4_A 278 VGELSSFLMYAFWVGISIGGLSSFY-----SELMKGLGAGGRLWELLEREPKLPFNEGV------------------ILN 334 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCSSCSB------------------CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCCCC------------------CCC
Confidence 3444455555566677777666655 55667777888888887765421110000 000
Q ss_pred CCCcce-EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh
Q 018638 86 DDGDVL-IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 86 ~~~~~~-l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
...... |+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~-~ 413 (595)
T 2yl4_A 335 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN-P 413 (595)
T ss_dssp TTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC-H
T ss_pred cCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC-H
Confidence 111123 999999999974 46999999999999999999999999999999999999999999999999986542 2
Q ss_pred hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChH
Q 018638 162 EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGG 230 (352)
Q Consensus 162 ~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGG 230 (352)
... +.+||||||++.+|+ .||+|||.++.......+ ++++.++++.++++++.++. +.+||||
T Consensus 414 ~~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 414 VWL-RSKIGTVSQEPILFS-CSIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp HHH-HHSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred HHH-HhceEEEccCCcccC-CCHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHH
Confidence 222 336999999999997 599999998642111122 34577888888886654443 4899999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
|||||+|||||++ +|++|||||||++||+.++..+.+.|+++.+ + +|+|+||||++.+.. |
T Consensus 488 q~qrv~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~~-~ 548 (595)
T 2yl4_A 488 QKQRIAIARALLK-------NPKILLLDEATSALDAENEYLVQEALDRLMD-G----------RTVLVIAHRLSTIKN-A 548 (595)
T ss_dssp HHHHHHHHHHHHH-------CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECCCHHHHHH-S
T ss_pred HHHHHHHHHHHHc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhc-C----------CEEEEEecCHHHHHc-C
Confidence 9999999999998 5999999999999999999999999999876 4 499999999999865 9
Q ss_pred CEEEEEeCCeEEEeeccccccc
Q 018638 311 DRLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 311 Drv~vL~~G~iv~~g~~~~~~~ 332 (352)
|||++|++|++++.|+++++..
T Consensus 549 d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 549 NMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp SEEEEEETTEEEEEECSCC---
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999998888765
No 34
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.3e-53 Score=436.97 Aligned_cols=276 Identities=22% Similarity=0.353 Sum_probs=221.9
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.++..++... ........+.+|+......|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b5x_A 280 TPGTFTVVFSAMFGLMRPLKALTSVT-----SEFQRGMAACQTLFGLMDLETERDN-G--------K---------Y--E 334 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcCCC-C--------C---------C--C
Confidence 34555566666667778887777666 6677788888998888776542110 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
......+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b5x_A 335 AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-LT 413 (582)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-HH
Confidence 0111235999999999974 67999999999999999999999999999999999999999999999999976532 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGq 231 (352)
.. +.+||||||++.+|+ .||+|||.++.. ...+ ++++.++++.++++++.++.| .+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 414 NL-RRHFALVSQNVHLFN-DTIANNIAYAAE--GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HH-hcCeEEEcCCCcccc-ccHHHHHhccCC--CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 22 346999999999998 599999998531 1122 244677888888877666654 7999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qr~~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b5x_A 486 RQRVAIARALLR-------DAPVLILDEATSALDTESERAIQAALDELQK-N----------KTVLVIAHRLSTIE-QAD 546 (582)
T ss_pred HHHHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHH-hCC
Confidence 999999999997 5999999999999999999999999999864 5 59999999999987 599
Q ss_pred EEEEEeCCeEEEeecccccccC
Q 018638 312 RLIFLYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~~ 333 (352)
||++|++|++++.|+++++...
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 547 EILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999988887654
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-53 Score=402.04 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=184.5
Q ss_pred eEEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGE----KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~----~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
||+++||+++|++ +.+|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~----~~-~ 73 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI----RN-Y 73 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC----SC-C
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch----HH-h
Confidence 5899999999987 789999999999 9999999999999999999999999 9999999999987432 11 3
Q ss_pred ceEE-EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 167 LRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 167 ~~ig-~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
++|+ ||||++.+ .+||+||+.++.... ... .+++.++++.+||. +..++++.+|||||||||+|||||+.
T Consensus 74 ~~i~~~v~Q~~~l--~~tv~enl~~~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~- 145 (263)
T 2pjz_A 74 IRYSTNLPEAYEI--GVTVNDIVYLYEELK-GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS- 145 (263)
T ss_dssp TTEEECCGGGSCT--TSBHHHHHHHHHHHT-CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-
T ss_pred hheEEEeCCCCcc--CCcHHHHHHHhhhhc-chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-
Confidence 4699 99999987 689999999865322 122 34578899999999 99999999999999999999999997
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC-EEEEEeCCeEEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD-RLIFLYEGKIVW 323 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD-rv~vL~~G~iv~ 323 (352)
+|++|||||||++||+.++..++++|++++ .|||+||||++++..+|| |+++|++|++++
T Consensus 146 ------~p~lllLDEPts~LD~~~~~~l~~~L~~~~-------------~tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 146 ------QPEIVGLDEPFENVDAARRHVISRYIKEYG-------------KEGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp ------CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-------------SEEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred ------CCCEEEEECCccccCHHHHHHHHHHHHHhc-------------CcEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 699999999999999999999999998763 289999999999999999 999999999999
Q ss_pred eecccccc
Q 018638 324 QGMTHEFT 331 (352)
Q Consensus 324 ~g~~~~~~ 331 (352)
.|+++++.
T Consensus 207 ~g~~~~l~ 214 (263)
T 2pjz_A 207 PISVSELL 214 (263)
T ss_dssp EEEHHHHH
T ss_pred ecCHHHHH
Confidence 99888764
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.8e-53 Score=436.76 Aligned_cols=275 Identities=22% Similarity=0.346 Sum_probs=221.0
Q ss_pred cccchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 018638 5 SSSGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+....+.+...+..++.++..+.... ........+.+|+......|+.... . . . +
T Consensus 280 t~g~l~~~~~~~~~~~~pl~~l~~~~-----~~~~~~~~a~~ri~~~l~~~~~~~~-~--------~---------~--~ 334 (582)
T 3b60_A 280 TAGTITVVFSSMIALMRPLKSLTNVN-----AQFQRGMAACQTLFAILDSEQEKDE-G--------K---------R--V 334 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCCSCCC-C--------C---------B--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCccC-C--------C---------C--C
Confidence 33455566666667778887777666 6677788888999888877643210 0 0 0 0
Q ss_pred CCCCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh
Q 018638 85 EDDGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 85 ~~~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~ 162 (352)
......+|+++||+++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-~~ 413 (582)
T 3b60_A 335 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-LA 413 (582)
T ss_dssp CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-HH
T ss_pred CCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-HH
Confidence 0111235999999999973 67999999999999999999999999999999999999999999999999986532 22
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccC-----------CCCCChHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRL-----------PSELSGGM 231 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSGGq 231 (352)
.. +.+||||||++.+|+ .||+|||.++.. ...+. +++.++++.++++++.++. +.+|||||
T Consensus 414 ~~-~~~i~~v~Q~~~l~~-~tv~eni~~~~~--~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SL-RNQVALVSQNVHLFN-DTVANNIAYART--EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HH-HHTEEEECSSCCCCS-SBHHHHHHTTTT--SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HH-HhhCeEEccCCcCCC-CCHHHHHhccCC--CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 22 336999999999998 499999998641 11222 3467788888887665554 48999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcC
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVD 311 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aD 311 (352)
|||++|||||++ +|++|||||||++||+.++..+.+.|+++.+ | +|+|+||||++.+. .||
T Consensus 486 ~qrl~iAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~~~~~~-~~d 546 (582)
T 3b60_A 486 RQRIAIARALLR-------DSPILILDEATSALDTESERAIQAALDELQK-N----------RTSLVIAHRLSTIE-QAD 546 (582)
T ss_dssp HHHHHHHHHHHH-------CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T----------SEEEEECSCGGGTT-TCS
T ss_pred HHHHHHHHHHHh-------CCCEEEEECccccCCHHHHHHHHHHHHHHhC-C----------CEEEEEeccHHHHH-hCC
Confidence 999999999998 5999999999999999999999999999865 5 59999999999986 599
Q ss_pred EEEEEeCCeEEEeeccccccc
Q 018638 312 RLIFLYEGKIVWQGMTHEFTS 332 (352)
Q Consensus 312 rv~vL~~G~iv~~g~~~~~~~ 332 (352)
||++|++|++++.|+++++..
T Consensus 547 ~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 547 EIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEECCEEEEecCHHHHHH
Confidence 999999999999998888764
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.1e-53 Score=436.85 Aligned_cols=283 Identities=25% Similarity=0.357 Sum_probs=218.8
Q ss_pred cchhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCC
Q 018638 7 SGSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPED 86 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
.....+...+..++.++..+.... ........+.+|+.+....|+........ .+.+
T Consensus 278 g~l~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------------------~~~~ 334 (578)
T 4a82_A 278 GTLAAFVGYLELLFGPLRRLVASF-----TTLTQSFASMDRVFQLIDEDYDIKNGVGA------------------QPIE 334 (578)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCCSSCCCTTC------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCcccCCCCc------------------cccC
Confidence 344444444555566666655555 56667778888998888776432111000 0001
Q ss_pred CCcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 87 DGDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 87 ~~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.....|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ....
T Consensus 335 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-~~~~ 413 (578)
T 4a82_A 335 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-TGSL 413 (578)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-HHHH
T ss_pred CCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHH
Confidence 11234999999999964 57999999999999999999999999999999999999999999999999986542 2222
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+||||||++.+|+. ||+|||.++.. .... +++.++++.+++.++.++.| .+|||||||
T Consensus 414 -r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 -RNQIGLVQQDNILFSD-TVKENILLGRP---TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp -HHTEEEECSSCCCCSS-BHHHHHGGGCS---SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred -hhheEEEeCCCccCcc-cHHHHHhcCCC---CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3369999999999985 99999988531 1222 34566777777766555554 689999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
||+|||||++ +|++|||||||++||+.++..+.+.++++.+ + .|+|+||||++.+.. ||||
T Consensus 485 rv~lAral~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 485 RLSIARIFLN-------NPPILILDEATSALDLESESIIQEALDVLSK-D----------RTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp HHHHHHHHHH-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T----------SEEEEECSSGGGTTT-CSEE
T ss_pred HHHHHHHHHc-------CCCEEEEECccccCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEE
Confidence 9999999998 5999999999999999999999999998854 3 499999999999865 8999
Q ss_pred EEEeCCeEEEeecccccccCCcHHHHHHh
Q 018638 314 IFLYEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
++|++|+|+++|+++|+...... ..+++
T Consensus 546 ~~l~~G~i~~~g~~~el~~~~~~-~~~~~ 573 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIAKQGA-YEHLY 573 (578)
T ss_dssp EEEETTEEEEEECHHHHHHTTSH-HHHHH
T ss_pred EEEECCEEEEECCHHHHHhCCcH-HHHHH
Confidence 99999999999998888754433 34443
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-54 Score=425.00 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSF--GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y--~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..|+++||+|+| +++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|+|+|+++.... .... ++
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-~~~~-rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-LEQW-RK 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-HHHH-HH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-hHHH-hC
Confidence 359999999999 66789999999999999999999999999999999999998 9999999999986542 2222 23
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCC-----------CChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSE-----------LSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----------LSGGqrQRva 236 (352)
+||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.++.+++|.+ |||||||||+
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~----~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNA----AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTC----CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CEEEEcCCcccCc-cCHHHHhhhcc----ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 6999999999998 69999997421 122 24577899999999999999998 9999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||+. +|++|||||||++||+..+..+++.|+++.+ + .|+|+||||++.+ ..||||++|
T Consensus 166 lARAL~~-------~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~----------~tvi~vtHd~e~~-~~aDri~vl 226 (390)
T 3gd7_A 166 LARSVLS-------KAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-D----------CTVILCEARIEAM-LECDQFLVI 226 (390)
T ss_dssp HHHHHHT-------TCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-T----------SCEEEECSSSGGG-TTCSEEEEE
T ss_pred HHHHHhc-------CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C----------CEEEEEEcCHHHH-HhCCEEEEE
Confidence 9999997 6999999999999999999999999988643 3 5999999998765 469999999
Q ss_pred eCCeEEEeecccccc-cCCcHHHHHHhc
Q 018638 317 YEGKIVWQGMTHEFT-SSSNPIVQQFAS 343 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~-~~~~~~~~~~~~ 343 (352)
++|+|++.|++++++ .+.+.++..|+.
T Consensus 227 ~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 227 EENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp ETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred ECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999999999976 456788888874
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.5e-52 Score=387.50 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=170.6
Q ss_pred ceEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 90 VLIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 90 ~~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.+|+++||+++|+ ++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 4799999999995 57899999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCccc-----------ccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVE-----------DRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSGGqrQRva 236 (352)
+|+|+||++.+|+. ||+||+.++.. .... .+.++++.+++.+.. ++.+.+|||||||||+
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC----CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC----cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999985 99999988531 1111 133445555554433 3345899999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDL-IRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~l-l~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|||||++ +|++|||||||++||+.++..+++. +.++. ++ .|||+||||++++. .|||+++
T Consensus 141 lAral~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~----------~tvi~vtH~~~~~~-~~d~v~~ 201 (229)
T 2pze_A 141 LARAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILI 201 (229)
T ss_dssp HHHHHHS-------CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HCSEEEE
T ss_pred HHHHHhc-------CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CC----------CEEEEEcCChHHHH-hCCEEEE
Confidence 9999997 6999999999999999999999986 45553 34 59999999999986 4999999
Q ss_pred EeCCeEEEeecccccccC
Q 018638 316 LYEGKIVWQGMTHEFTSS 333 (352)
Q Consensus 316 L~~G~iv~~g~~~~~~~~ 333 (352)
|++|++++.|+++++...
T Consensus 202 l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 202 LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EETTEEEEEECHHHHHTC
T ss_pred EECCEEEEECCHHHHHhc
Confidence 999999999988887643
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-52 Score=434.90 Aligned_cols=271 Identities=24% Similarity=0.385 Sum_probs=208.1
Q ss_pred HHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcc
Q 018638 11 LFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDV 90 (352)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (352)
.+......++.++..++... ........+.+|+......|+........ . .......
T Consensus 284 ~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~--~~~~~~~ 340 (587)
T 3qf4_A 284 AYTNYLMQIMFSLMMIGNIL-----NFIVRASASAKRVLEVLNEKPAIEEADNA----------------L--ALPNVEG 340 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCSCCCCTTC----------------B--CCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCccCCCCCc----------------c--ccCCCCC
Confidence 33333444455555544444 45556677888888887766422111100 0 0011123
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .... +.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK-LKDL-RGH 418 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC-HHHH-HHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC-HHHH-Hhh
Confidence 499999999995 467999999999999999999999999999999999999999999999999986542 2222 336
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-----------CcccccCCCCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL-----------KGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~~~~LSGGqrQRvaI 237 (352)
|+||||++.+|+. ||+|||.++.. ....++ +.++++.+++ +...++.+.+||||||||++|
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRE---DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCS---SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCC---CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999975 99999987531 122322 3344444444 445567788999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|++|||||||++||+.++..+++.|+++.+ | +|+|+||||++.+. .||||++|+
T Consensus 491 ARal~~-------~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~----------~tvi~itH~l~~~~-~~d~i~vl~ 551 (587)
T 3qf4_A 491 ARALVK-------KPKVLILDDCTSSVDPITEKRILDGLKRYTK-G----------CTTFIITQKIPTAL-LADKILVLH 551 (587)
T ss_dssp HHHHHT-------CCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T----------CEEEEEESCHHHHT-TSSEEEEEE
T ss_pred HHHHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C----------CEEEEEecChHHHH-hCCEEEEEE
Confidence 999997 5999999999999999999999999998743 4 59999999999986 799999999
Q ss_pred CCeEEEeecccccccC
Q 018638 318 EGKIVWQGMTHEFTSS 333 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~ 333 (352)
+|+|++.|+++|+...
T Consensus 552 ~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 552 EGKVAGFGTHKELLEH 567 (587)
T ss_dssp TTEEEEEECHHHHHHH
T ss_pred CCEEEEECCHHHHHhC
Confidence 9999999988887654
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-53 Score=438.87 Aligned_cols=262 Identities=24% Similarity=0.433 Sum_probs=209.1
Q ss_pred hhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEE
Q 018638 20 SSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYK 99 (352)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~ 99 (352)
+.++..+.... ........+.+|+......|+....... . +.......|+++||+|
T Consensus 307 ~~~l~~l~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~-----------------~--~~~~~~~~i~~~~v~~ 362 (598)
T 3qf4_B 307 TRPLNELSNQF-----NMIQMALASAERIFEILDLEEEKDDPDA-----------------V--ELREVRGEIEFKNVWF 362 (598)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTSCCCCCCSSC-----------------C--CCCSCCCCEEEEEEEC
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCCCCCCCC-----------------C--CCCCCCCeEEEEEEEE
Confidence 44554444443 4555667788888888877653211000 0 0011112499999999
Q ss_pred EeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 100 SFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 100 ~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .... +.+||||||++.+
T Consensus 363 ~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-~~~~-r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-RSSL-RSSIGIVLQDTIL 440 (598)
T ss_dssp CSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-HHHH-HHHEEEECTTCCC
T ss_pred ECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-HHHH-HhceEEEeCCCcc
Confidence 9964 67999999999999999999999999999999999999999999999999986543 2222 3369999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|+ .||+|||.++.. ..+. +++.++++.++++++.++.| .+|||||||||+|||||++
T Consensus 441 f~-~tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~---- 508 (598)
T 3qf4_B 441 FS-TTVKENLKYGNP---GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA---- 508 (598)
T ss_dssp CS-SBHHHHHHSSST---TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT----
T ss_pred cc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc----
Confidence 97 599999988531 1222 23567788888877777776 6999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeecc
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMT 327 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~ 327 (352)
+|++|||||||++||+.++..+.+.|+++. +| +|+|+||||++.+.. ||||++|++|+|++.|++
T Consensus 509 ---~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~----------~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 509 ---NPKILILDEATSNVDTKTEKSIQAAMWKLM-EG----------KTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKH 573 (598)
T ss_dssp ---CCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TT----------SEEEEESCCTTHHHH-CSEEEEECSSSEEECSCH
T ss_pred ---CCCEEEEECCccCCCHHHHHHHHHHHHHHc-CC----------CEEEEEecCHHHHHc-CCEEEEEECCEEEEECCH
Confidence 599999999999999999999999999986 34 599999999999876 899999999999999988
Q ss_pred cccccCC
Q 018638 328 HEFTSSS 334 (352)
Q Consensus 328 ~~~~~~~ 334 (352)
+++....
T Consensus 574 ~~l~~~~ 580 (598)
T 3qf4_B 574 DELIQKR 580 (598)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 8876543
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.1e-52 Score=385.90 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=171.3
Q ss_pred eEEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFG--EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~--~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
+|+++||+++|+ ++.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------S 67 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---------------C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---------------E
Confidence 599999999997 57899999999999999999999999999999999999999999999988 2
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHH---HHHHcCCC-----cccccCCCCCChHHHHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKE---NLAAVGLK-----GVEDRLPSELSGGMKKRVALARS 240 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~---~l~~~gL~-----~~~~~~~~~LSGGqrQRvaIArA 240 (352)
||||||++.++ .+||+||+.++.. ...+.. +++.+ +++.+++. ...++++.+|||||||||+||||
T Consensus 68 i~~v~Q~~~~~-~~tv~enl~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 68 VAYVPQQAWIQ-NDSLRENILFGCQ----LEEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTSC----CCTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC-CcCHHHHhhCccc----cCHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 89999998765 6899999988542 111111 11211 12233321 23578899999999999999999
Q ss_pred HhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 241 IIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR---SVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 241 L~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~---~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
|+. +|++|||||||++||+.++..+++.|. ++. +| .|||+||||++.+. .||||++|+
T Consensus 142 L~~-------~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~----------~tviivtH~~~~~~-~~d~v~~l~ 202 (237)
T 2cbz_A 142 VYS-------NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN----------KTRILVTHSMSYLP-QVDVIIVMS 202 (237)
T ss_dssp HHH-------CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT----------SEEEEECSCSTTGG-GSSEEEEEE
T ss_pred Hhc-------CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC----------CEEEEEecChHHHH-hCCEEEEEe
Confidence 997 599999999999999999999999985 343 34 59999999999875 699999999
Q ss_pred CCeEEEeecccccccCCcHH
Q 018638 318 EGKIVWQGMTHEFTSSSNPI 337 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~~~~ 337 (352)
+|++++.|+++++......+
T Consensus 203 ~G~i~~~g~~~~~~~~~~~~ 222 (237)
T 2cbz_A 203 GGKISEMGSYQELLARDGAF 222 (237)
T ss_dssp TTEEEEEECHHHHHHHTSHH
T ss_pred CCEEEEeCCHHHHhhccHHH
Confidence 99999999888876444433
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-50 Score=453.14 Aligned_cols=216 Identities=30% Similarity=0.522 Sum_probs=188.0
Q ss_pred EEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 92 IDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 92 l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
|+++||+++|++ .++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|++||.|+..+. ..+. |.+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~-~~~l-R~~ 1154 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN-PEHT-RSQ 1154 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC-HHHH-HTT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC-HHHH-Hhh
Confidence 999999999964 36999999999999999999999999999999999999999999999999998753 3333 347
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHHH
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVAL 237 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRvaI 237 (352)
|+||||+|.||+ .||+|||.|++.. ...+ ++++.++++.++++++....| .+||||||||++|
T Consensus 1155 i~~V~Qdp~LF~-gTIreNI~~gld~-~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1155 IAIVSQEPTLFD-CSIAENIIYGLDP-SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp EEEECSSCCCCS-EEHHHHHSSSSCT-TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred eEEECCCCEeeC-ccHHHHHhccCCC-CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 999999999998 4999999987522 1122 345788899999877766554 5799999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||++ +|+|||||||||+||+++++.+++.|+++.++ +|+|+|+|+++++.. ||||+||+
T Consensus 1229 ARAllr-------~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~-----------~TvI~IAHRLsTi~~-aD~I~Vld 1289 (1321)
T 4f4c_A 1229 ARALVR-------NPKILLLDEATSALDTESEKVVQEALDRAREG-----------RTCIVIAHRLNTVMN-ADCIAVVS 1289 (1321)
T ss_dssp HHHHHS-------CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSS-----------SEEEEECSSSSTTTT-CSEEEEES
T ss_pred HHHHHh-------CCCEEEEeCccccCCHHHHHHHHHHHHHHcCC-----------CEEEEeccCHHHHHh-CCEEEEEE
Confidence 999997 59999999999999999999999999886543 599999999999987 69999999
Q ss_pred CCeEEEeecccccccCC
Q 018638 318 EGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~~~ 334 (352)
+|+|++.|+++|++...
T Consensus 1290 ~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SSSEEEEECHHHHHHCC
T ss_pred CCEEEEECCHHHHHhCC
Confidence 99999999998887543
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.1e-49 Score=439.91 Aligned_cols=276 Identities=24% Similarity=0.315 Sum_probs=216.8
Q ss_pred chhHHHHHHHHhhhhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCC
Q 018638 8 GSLLFPLATKSVSSRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDD 87 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (352)
..+.++.....++.++..++... ........+.+|+......++........ . ..+..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---------------~--~~~~~ 411 (1321)
T 4f4c_A 354 DMLTTFSSVMMGSMALGLAGPQL-----AVLGTAQGAASGIYEVLDRKPVIDSSSKA---------------G--RKDMK 411 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTTSCCSSCSSSC---------------C--CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCccccccccc---------------c--ccCCC
Confidence 33344444444556665555444 55667778888998888765422111100 0 01111
Q ss_pred CcceEEEEeEEEEeC---CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhh
Q 018638 88 GDVLIDCRNVYKSFG---EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 88 ~~~~l~~~nls~~y~---~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~ 164 (352)
....|+++||+|+|+ ++++|+||||+|++|+.+|||||||||||||+++|.|+++|++|+|.+||+++..+. ..+.
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~-~~~l 490 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN-LEFL 490 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC-HHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc-HHHH
Confidence 112399999999996 357999999999999999999999999999999999999999999999999998753 3333
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHH
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKK 233 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQ 233 (352)
+.+||||+|+|.+|+ .||+|||.|+.. ..+ ++++.++++.++++++.++.| ..|||||||
T Consensus 491 -r~~i~~v~Q~~~Lf~-~TI~eNI~~g~~---~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 -RKNVAVVSQEPALFN-CTIEENISLGKE---GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp -HHHEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred -hhcccccCCcceeeC-CchhHHHhhhcc---cch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 336999999999997 599999998641 123 345778888888877666655 589999999
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE
Q 018638 234 RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL 313 (352)
Q Consensus 234 RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv 313 (352)
|++||||+++ +|+|||||||||+||++++..+.+.|.++.+. +|+|+|||+++.+.. ||+|
T Consensus 562 RiaiARAl~~-------~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~-----------~T~iiiaHrls~i~~-aD~I 622 (1321)
T 4f4c_A 562 RIAIARALVR-------NPKILLLDEATSALDAESEGIVQQALDKAAKG-----------RTTIIIAHRLSTIRN-ADLI 622 (1321)
T ss_dssp HHHHHHHHTT-------CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT-----------SEEEEECSCTTTTTT-CSEE
T ss_pred HHHHHHHHcc-------CCCEEEEecccccCCHHHHHHHHHHHHHHhCC-----------CEEEEEcccHHHHHh-CCEE
Confidence 9999999997 59999999999999999999999999998653 499999999999875 7999
Q ss_pred EEEeCCeEEEeecccccccCC
Q 018638 314 IFLYEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 314 ~vL~~G~iv~~g~~~~~~~~~ 334 (352)
++|++|+|++.|+.+|+....
T Consensus 623 ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 623 ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp EEEETTEEEEEECHHHHHTTT
T ss_pred EEeeCCeeeccCCHHHHHHhh
Confidence 999999999999877776543
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.6e-49 Score=377.46 Aligned_cols=197 Identities=23% Similarity=0.392 Sum_probs=155.7
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||++.+ +.+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------RI 101 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------CE
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------EE
Confidence 469999999864 6799999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc-----------cCCCCCChHHHHHHHHH
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVED-----------RLPSELSGGMKKRVALA 238 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSGGqrQRvaIA 238 (352)
+||||++.+|+. ||+||+. +.. .... .+.++++.+++.+..+ +.+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc----cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999999884 9999997 431 1211 2334555666644333 34589999999999999
Q ss_pred HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 239 RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLI-RSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 239 rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll-~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
|||+. +|++|||||||+|||+.++..+++.+ +++. +| .|||+||||++.+. .|||+++|+
T Consensus 172 raL~~-------~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~----------~tviivtHd~~~~~-~~d~i~~l~ 232 (290)
T 2bbs_A 172 RAVYK-------DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN----------KTRILVTSKMEHLK-KADKILILH 232 (290)
T ss_dssp HHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TT----------SEEEEECCCHHHHH-HSSEEEEEE
T ss_pred HHHHC-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CC----------CEEEEEecCHHHHH-cCCEEEEEE
Confidence 99997 69999999999999999999999864 4553 34 59999999999986 599999999
Q ss_pred CCeEEEeeccccccc
Q 018638 318 EGKIVWQGMTHEFTS 332 (352)
Q Consensus 318 ~G~iv~~g~~~~~~~ 332 (352)
+|++++.|+++++..
T Consensus 233 ~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN 247 (290)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCeEEEeCCHHHHhh
Confidence 999999998888753
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.4e-48 Score=430.17 Aligned_cols=215 Identities=29% Similarity=0.475 Sum_probs=181.9
Q ss_pred eEEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGE---KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~---~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..+. +.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-~~~~-r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-VRYL-RE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC-HHHH-HH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC-HHHH-Hh
Confidence 3999999999974 46999999999999999999999999999999999999999999999999987643 3333 33
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-----------cccCCCCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-----------EDRLPSELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~~~~~~LSGGqrQRva 236 (352)
+||||||++.+|+. ||+|||.++.. ..+.++ +.++++.+++.++ ..+...+|||||||||+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE---DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS---SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC---CCCHHH----HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 69999999999985 99999998642 123333 4455555555433 34455699999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+|||||||||+||+.++..+.+.++++.+ | +|+|+|||+++++.. ||||++|
T Consensus 537 iARal~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~----------~t~i~itH~l~~i~~-~d~i~vl 597 (1284)
T 3g5u_A 537 IARALVR-------NPKILLLDEATSALDTESEAVVQAALDKARE-G----------RTTIVIAHRLSTVRN-ADVIAGF 597 (1284)
T ss_dssp HHHHHHH-------CCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-T----------SEEEEECSCHHHHTT-CSEEEEC
T ss_pred HHHHHhc-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-C----------CEEEEEecCHHHHHc-CCEEEEE
Confidence 9999998 5999999999999999999999999988754 4 599999999999976 8999999
Q ss_pred eCCeEEEeecccccccCC
Q 018638 317 YEGKIVWQGMTHEFTSSS 334 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~ 334 (352)
++|+|++.|+++++....
T Consensus 598 ~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 598 DGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp SSSCCCCEECHHHHHHTT
T ss_pred ECCEEEEECCHHHHHhCC
Confidence 999999999888876543
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-47 Score=428.76 Aligned_cols=219 Identities=26% Similarity=0.520 Sum_probs=185.0
Q ss_pred eEEEEeEEEEeCCe---eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 91 LIDCRNVYKSFGEK---HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 91 ~l~~~nls~~y~~~---~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
.|+++||+++|+++ ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .... +.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~-r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-VQWL-RA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-HHHH-TT
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-HHHH-Hh
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987543 3333 44
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCC-----------CCCChHHHHHHH
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLP-----------SELSGGMKKRVA 236 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSGGqrQRva 236 (352)
+|+||||++.+|+ .||+|||.++.. ....+.+ .+.++++.+++.++.++.| .+|||||||||+
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~-~~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDN-SRVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCS-SCCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCC-CCCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 7999999999886 699999988542 1112332 3556677777766655554 689999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||||++ +|+||||||||++||+.++..+++.|+++. +| +|+|+||||++++.. ||||++|
T Consensus 1182 iARal~~-------~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~----------~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A 1182 IARALVR-------QPHILLLDEATSALDTESEKVVQEALDKAR-EG----------RTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp HHHHHHH-------CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SS----------SCEEEECSCTTGGGS-CSEEEEE
T ss_pred HHHHHHc-------CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CC----------CEEEEEecCHHHHHc-CCEEEEE
Confidence 9999998 599999999999999999999999998853 34 599999999999865 9999999
Q ss_pred eCCeEEEeecccccccCCcH
Q 018638 317 YEGKIVWQGMTHEFTSSSNP 336 (352)
Q Consensus 317 ~~G~iv~~g~~~~~~~~~~~ 336 (352)
++|+|++.|+++++......
T Consensus 1243 ~~G~i~~~g~~~~l~~~~g~ 1262 (1284)
T 3g5u_A 1243 QNGKVKEHGTHQQLLAQKGI 1262 (1284)
T ss_dssp ETBEEEEEECHHHHHHSCSH
T ss_pred ECCEEEEECCHHHHHhCCCH
Confidence 99999999998888755433
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-45 Score=379.87 Aligned_cols=207 Identities=28% Similarity=0.367 Sum_probs=181.5
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
+.++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~---------------~ 347 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD---------------L 347 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC---------------C
T ss_pred CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC---------------c
Confidence 35689999999999875 6999999999999999999999999999999999999999999751 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||.|++....... .. ..+++.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~---- 418 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASK--LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR---- 418 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccC--CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999998777789999886531111 01 12457789999999989999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+||||++|++ |+++..
T Consensus 419 ---~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 419 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec
Confidence 6999999999999999999999999999974 45 5999999999999999999999986 788889
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 486 g~~~~~~~ 493 (538)
T 1yqt_A 486 LPPMGMRE 493 (538)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99888753
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-45 Score=383.13 Aligned_cols=207 Identities=29% Similarity=0.374 Sum_probs=182.1
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. .
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---------------~ 417 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------------L 417 (607)
T ss_dssp CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---------------C
T ss_pred CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---------------e
Confidence 35789999999999875 6999999999999999999999999999999999999999999761 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|||+||++.+++.+||.|++.+..... . ...+++.++++.+|+.+..++++.+|||||||||+|||||++
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~---- 488 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK--L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR---- 488 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH--H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS----
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC--C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh----
Confidence 5999999988777799999887641110 0 113457889999999999999999999999999999999996
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|++|||||||+|||+.++..++++|+++.+ +| .|||+||||++++..+||||++|++ |+++..
T Consensus 489 ---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g----------~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 489 ---DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE----------KTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp ---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec
Confidence 6999999999999999999999999999975 35 5999999999999999999999986 888889
Q ss_pred eccccccc
Q 018638 325 GMTHEFTS 332 (352)
Q Consensus 325 g~~~~~~~ 332 (352)
|+++++..
T Consensus 556 g~p~~~~~ 563 (607)
T 3bk7_A 556 LPPMGMRE 563 (607)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 98888753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.1e-45 Score=376.01 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=178.4
Q ss_pred CcceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccc
Q 018638 88 GDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGL 167 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~ 167 (352)
..++++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 266 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 330 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------- 330 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--------------
T ss_pred ccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--------------
Confidence 45689999999999875 588899999999999999999999999999999999999999987542
Q ss_pred eEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 168 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 168 ~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
.|+|++|+......+||+||+.+..... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~---- 402 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDA--LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAK---- 402 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSST--TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS----
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhc--cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc----
Confidence 4899999987666789999998742111 111 12346788999999999999999999999999999999997
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEe
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQ 324 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~ 324 (352)
+|+||||||||+|||+.++..++++|++++++ | .|||+||||++++..+||||++|++ |.+...
T Consensus 403 ---~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g----------~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 403 ---EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK----------AVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp ---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred ---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCcceeccC
Confidence 69999999999999999999999999999765 4 5999999999999999999999986 556666
Q ss_pred eccccc
Q 018638 325 GMTHEF 330 (352)
Q Consensus 325 g~~~~~ 330 (352)
+++.++
T Consensus 470 ~~~~~~ 475 (538)
T 3ozx_A 470 TSPVTL 475 (538)
T ss_dssp CCCEEH
T ss_pred CChHHH
Confidence 655544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=368.53 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=179.4
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 95 RNVYKSFGE-KHILRGVSFKIRHG-----EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 95 ~nls~~y~~-~~~L~~vsl~i~~G-----e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
++++++|++ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +.+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~---------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP---------KLN 414 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC---------SCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc---------CCc
Confidence 567888876 46899999999999 7899999999999999999999999999962 11 225
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
++|+||+...+...||++|+..... ..... .+.+.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~----- 484 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIR--GQFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI----- 484 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCS--STTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-----
T ss_pred EEEecccccccCCccHHHHHHHHhh--ccccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-----
Confidence 9999999766555799998864321 11111 2346788999999999999999999999999999999996
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC--CeEEEee
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE--GKIVWQG 325 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~--G~iv~~g 325 (352)
+|+||||||||+|||+.++..++++|+++.+ .| .|||+||||++++..+||||++|++ |+++..|
T Consensus 485 --~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g----------~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 485 --PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK----------KTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp --CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 6999999999999999999999999999864 46 5999999999999999999999996 8999999
Q ss_pred cccccccCCcHHHHHHhcC
Q 018638 326 MTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~ 344 (352)
+|+++++..+..++.+...
T Consensus 553 ~p~~~~~~~~~~~~~~~~~ 571 (608)
T 3j16_B 553 APESLLTGCNRFLKNLNVT 571 (608)
T ss_dssp CCEEHHHHHHHHHHHHTCC
T ss_pred ChHHHhhhhhHHHHhcCce
Confidence 9999876545556666533
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.5e-44 Score=368.32 Aligned_cols=200 Identities=27% Similarity=0.365 Sum_probs=163.2
Q ss_pred EEE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE---------EECCEeCCCCCC
Q 018638 92 IDC-RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRGRKRAGLIS 160 (352)
Q Consensus 92 l~~-~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I---------~i~G~~~~~~~~ 160 (352)
.++ +||+|+|+++ .+|++|| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 456 6999999876 4899999 999999999999999999999999999999999995 345543211000
Q ss_pred hhhhccceEEEEecCCCCCCC---CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDS---LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~---lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.......++++++|...+++. .|+.+|+.... . .+++.++++.+|+.+..++++.+|||||||||+|
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----E-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----S-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----H-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 001112358999997644332 38999885310 1 1236789999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..++++|++++++| .|||+||||++++..+||||++|+
T Consensus 170 AraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvi~vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 170 AAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG----------KSVLVVEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp HHHHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHHhCCEEEEEc
Confidence 999996 699999999999999999999999999998766 599999999999999999999998
Q ss_pred CC
Q 018638 318 EG 319 (352)
Q Consensus 318 ~G 319 (352)
+|
T Consensus 233 ~~ 234 (538)
T 1yqt_A 233 GE 234 (538)
T ss_dssp EE
T ss_pred Cc
Confidence 65
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-44 Score=372.46 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=166.5
Q ss_pred eEEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE---------EECC
Q 018638 91 LIDC--------RNVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV---------YIRG 152 (352)
Q Consensus 91 ~l~~--------~nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I---------~i~G 152 (352)
+|++ +||+++|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4888 8999999876 4999999 999999999999999999999999999999999996 3455
Q ss_pred EeCCCCCChhhhccceEEEEecCCCCCC---CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCCh
Q 018638 153 RKRAGLISDEEISGLRIGLVFQSAALFD---SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSG 229 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~ig~v~Q~~~l~~---~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSG 229 (352)
.++..........+.++++++|...+++ ..||.||+... .. .+++.++++.+||++..++++.+|||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----DE-----VGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----HH-----HHHHHHHHHHcCCCchhCCChhhCCH
Confidence 4321100000112235889999753322 23999998641 01 12367889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 230 GMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 230 GqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
||||||+|||||+. +|++|||||||++||+.++..+.++|+++.++| .|||+||||++++..+
T Consensus 232 GekQRvaIAraL~~-------~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g----------~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 232 GELQRVAIAAALLR-------KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG----------KAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHHHHHHHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC----------CEEEEEecChHHHHhh
Confidence 99999999999997 699999999999999999999999999998766 5999999999999999
Q ss_pred cCEEEEEeCC
Q 018638 310 VDRLIFLYEG 319 (352)
Q Consensus 310 aDrv~vL~~G 319 (352)
||||++|+++
T Consensus 295 adri~vl~~~ 304 (607)
T 3bk7_A 295 SDVIHVVYGE 304 (607)
T ss_dssp CSEEEEEESC
T ss_pred CCEEEEECCC
Confidence 9999999865
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.3e-42 Score=362.31 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=147.4
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH---------------------HHHHcCCCCC-------ceEEEECCEe
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------------------KIIAGLLAPD-------KGEVYIRGRK 154 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl---------------------k~l~Gl~~p~-------~G~I~i~G~~ 154 (352)
..++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 9999999999 4566666654
Q ss_pred CCCCCChhhhccceEEEEecCC-------------------CCCCCCCHHHHHHhhhhhcC-CCCH-------HHHHHHH
Q 018638 155 RAGLISDEEISGLRIGLVFQSA-------------------ALFDSLTVRENVGFLLYENS-KMRD-------EQISELV 207 (352)
Q Consensus 155 ~~~~~~~~~~~~~~ig~v~Q~~-------------------~l~~~lTV~eni~~~~~~~~-~~~~-------~~~~~~v 207 (352)
.... .+..+|+|+|.+ ..++.+||+||+.+...... .... ++..++
T Consensus 110 ~~~~------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (670)
T 3ux8_A 110 TSRN------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR- 182 (670)
T ss_dssp -----------CCBHHHHTTCC-------------------------CC--------------------------CHHH-
T ss_pred hhcc------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-
Confidence 3211 111244444432 23567899999987421110 0000 011111
Q ss_pred HHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 018638 208 KENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEPTAGLDPIASTVVEDLIRSVHKKGE 284 (352)
Q Consensus 208 ~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~ 284 (352)
.++++.+||.+. .++++.+|||||||||+|||||+. +|+ +|||||||+|||+..+..++++|++++++|
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~-------~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g- 254 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS-------RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG- 254 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT-------CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh-------CCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC-
Confidence 245889999764 789999999999999999999997 476 999999999999999999999999998776
Q ss_pred CCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 285 NGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 285 ~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
.|||+||||++.+. .||||++| ++|++++.|+++++..........++.+
T Consensus 255 ---------~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 310 (670)
T 3ux8_A 255 ---------NTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSG 310 (670)
T ss_dssp ---------CEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTT
T ss_pred ---------CEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhcc
Confidence 59999999999876 59999999 8999999999998875544444555543
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.2e-42 Score=372.70 Aligned_cols=206 Identities=22% Similarity=0.373 Sum_probs=165.4
Q ss_pred CcceEEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhc
Q 018638 88 GDVLIDCRNVYKSFGE--KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 88 ~~~~l~~~nls~~y~~--~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+.++|+++||+++|++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 3578999999999975 67999999999999999999999999999999999999999999999762
Q ss_pred cceEEEEecCCCC----CCCCCHHHHHHhhhhhc----------------------------------------------
Q 018638 166 GLRIGLVFQSAAL----FDSLTVRENVGFLLYEN---------------------------------------------- 195 (352)
Q Consensus 166 ~~~ig~v~Q~~~l----~~~lTV~eni~~~~~~~---------------------------------------------- 195 (352)
.+|+|++|++.. ....|+.+++.+.....
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 137777776421 12346666664421000
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHHHcCCCc-c-
Q 018638 196 ------------------------------------------------------SKMRDEQISELVKENLAAVGLKG-V- 219 (352)
Q Consensus 196 ------------------------------------------------------~~~~~~~~~~~v~~~l~~~gL~~-~- 219 (352)
.+.......+++.++|+.+||.. .
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000011345788999999975 4
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
.++++.+|||||||||+|||||+. +|+||||||||+|||+.+...+.+.|+++ + .|||+|
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~-------~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g----------~tVIiI 954 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQ-------RPHLIVLDEPTNYLDRDSLGALSKALKEF---E----------GGVIII 954 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTT-------CCSEEEEECGGGTCCHHHHHHHHHHHHSC---S----------SEEEEE
T ss_pred cCCCccccCHHHHHHHHHHHHHHh-------CCCEEEEECCccCCCHHHHHHHHHHHHHh---C----------CEEEEE
Confidence 688999999999999999999996 69999999999999999999988888654 3 389999
Q ss_pred cCCHHHHHhhcCEEEEEeCCeEEEeec
Q 018638 300 THQHSTIRRAVDRLIFLYEGKIVWQGM 326 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~iv~~g~ 326 (352)
|||++++..+|||+++|++|+++..|+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999988774
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.2e-40 Score=360.52 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=169.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
.|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+.. . ..+++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~-----~---~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ-----E---ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----T---TSCEE
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----c---ceeEE
Confidence 4777799999999999999999999999999999999999999999995 544 453321 1 12478
Q ss_pred EEecCC-CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCChHHHHHHHHHHHHhccCCCC
Q 018638 171 LVFQSA-ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSGGMKKRVALARSIIFDNTKE 248 (352)
Q Consensus 171 ~v~Q~~-~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~ 248 (352)
|++|++ .+++.+||.||+.+. ..+. .+++.++++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~---~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~----- 565 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFES---GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR----- 565 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTT---CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT-----
T ss_pred EEcccccccccCCcHHHHHHHh---hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc-----
Confidence 999985 678889999999761 1111 45688899999995 68899999999999999999999997
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE-Eeecc
Q 018638 249 SVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV-WQGMT 327 (352)
Q Consensus 249 a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv-~~g~~ 327 (352)
+|+||||||||++||+.++..+.++|++ .| .|||+||||++++..+||||++|++|+++ ..|++
T Consensus 566 --~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g----------~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 566 --NADILLLDEPTNHLDTVNVAWLVNYLNT---CG----------ITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp --TCSEEEEESTTTTCCHHHHHHHHHHHHH---SC----------SEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred --CCCEEEEECCccCCCHHHHHHHHHHHHh---CC----------CEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCH
Confidence 6999999999999999999999999987 44 59999999999999999999999999997 57877
Q ss_pred cccc
Q 018638 328 HEFT 331 (352)
Q Consensus 328 ~~~~ 331 (352)
+++.
T Consensus 631 ~e~~ 634 (986)
T 2iw3_A 631 TEFV 634 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.6e-40 Score=347.92 Aligned_cols=216 Identities=25% Similarity=0.324 Sum_probs=160.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH----------------------cCCCCCceEEEECCEeCCCCCCh
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA----------------------GLLAPDKGEVYIRGRKRAGLISD 161 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~----------------------Gl~~p~~G~I~i~G~~~~~~~~~ 161 (352)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998754 44444 46888888765432110
Q ss_pred hhh---------------------------------------ccceEEEEecCCCCCC----------------------
Q 018638 162 EEI---------------------------------------SGLRIGLVFQSAALFD---------------------- 180 (352)
Q Consensus 162 ~~~---------------------------------------~~~~ig~v~Q~~~l~~---------------------- 180 (352)
... .....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 000 0001345555443332
Q ss_pred ----------CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 181 ----------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 181 ----------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.+||+||+.+... .. . .+++.+.++.+|+.. ..++++.+|||||||||+|||||+++ .
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-----~~-~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~----p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-----IP-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRR----S 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-----CH-H-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSC----C
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-----hh-h-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhC----C
Confidence 4789999987431 11 1 234567889999964 57899999999999999999999974 1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEE
Q 018638 250 VEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVW 323 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~ 323 (352)
.+|+||||||||+|||+.++..++++|++++++| .|||+||||++.+. .||||++| ++|+|++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g----------~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC----------CEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 1357999999999999999999999999998776 59999999999875 69999999 8999999
Q ss_pred eecccccccCCcHHHHHHh
Q 018638 324 QGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 324 ~g~~~~~~~~~~~~~~~~~ 342 (352)
+|+++++......+...++
T Consensus 632 ~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 632 VGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp EECHHHHHTCTTCHHHHHH
T ss_pred ecCHHHHHhCCccHHHHHH
Confidence 9999988654444444444
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=338.30 Aligned_cols=201 Identities=26% Similarity=0.326 Sum_probs=152.8
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-----------ECCEeCCCCCChhh
Q 018638 96 NVYKSFGEK-HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-----------IRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~-~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-----------i~G~~~~~~~~~~~ 163 (352)
|++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++........
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 568899754 4677777 6899999999999999999999999999999999982 33322110000000
Q ss_pred hccceEEEEecCCCC------CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAAL------FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l------~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.......+.+|.... .+..++.+++... ... ..+++.++++.+||.+..++++.+|||||||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR----MEK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH----CCS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh----hhh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 001112334443211 1123555555431 111 12457889999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
||||+. +|++|||||||++||+.++..+.++|++++++| .|||+||||++++..+||||++|+
T Consensus 233 AraL~~-------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g----------~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 233 GMSCVQ-------EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT----------KYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp HHHHHS-------CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTT----------CEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHh-------CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999997 699999999999999999999999999998776 599999999999999999999999
Q ss_pred CCeEE
Q 018638 318 EGKIV 322 (352)
Q Consensus 318 ~G~iv 322 (352)
+|..+
T Consensus 296 ~~~~~ 300 (608)
T 3j16_B 296 GVPSV 300 (608)
T ss_dssp SCTTT
T ss_pred CCccc
Confidence 87543
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.5e-39 Score=331.03 Aligned_cols=195 Identities=23% Similarity=0.334 Sum_probs=152.5
Q ss_pred eEEEEeCCeeeeEeeeEEE-eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE-----------EECCEeCCCCCChhh
Q 018638 96 NVYKSFGEKHILRGVSFKI-RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-----------YIRGRKRAGLISDEE 163 (352)
Q Consensus 96 nls~~y~~~~~L~~vsl~i-~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I-----------~i~G~~~~~~~~~~~ 163 (352)
+++.+||.. .++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|+++........
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 567889753 245555544 4899999999999999999999999999999998 567765421100000
Q ss_pred hccceEEEEecCC----CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSA----ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 164 ~~~~~ig~v~Q~~----~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIAr 239 (352)
.....+...+|.. .++. .++.+++.... . .+++.++++.+|+....++++.+|||||||||+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~~-----~-----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~ 151 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLK-GTVNEILTKID-----E-----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAA 151 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCC-SBHHHHHHHHC-----C-----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhcc-CcHHHHhhcch-----h-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1112355555543 3343 48888764310 1 123667899999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 240 SIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 240 AL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
||+. +|++|||||||++||+.++..+.++|+++++ | .|||+||||++++..+||+|++|++|
T Consensus 152 aL~~-------~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g----------~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 152 SLLR-------EADVYIFDQPSSYLDVRERMNMAKAIRELLK-N----------KYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHS-------CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-T----------SEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHc-------CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-C----------CEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9997 6999999999999999999999999999965 5 59999999999999999999999876
Q ss_pred e
Q 018638 320 K 320 (352)
Q Consensus 320 ~ 320 (352)
.
T Consensus 214 ~ 214 (538)
T 3ozx_A 214 S 214 (538)
T ss_dssp T
T ss_pred c
Confidence 4
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-36 Score=324.93 Aligned_cols=227 Identities=22% Similarity=0.316 Sum_probs=172.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHH---------HHHHcCCCCC------ce------EEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTIL---------KIIAGLLAPD------KG------EVY 149 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLl---------k~l~Gl~~p~------~G------~I~ 149 (352)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .|.
T Consensus 589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 46666653 3579999999999999999999999999997 4555544433 23 244
Q ss_pred ECCEeCCCCCC--hh-------------------h------------------hccceEEEEecCCCCCCC---------
Q 018638 150 IRGRKRAGLIS--DE-------------------E------------------ISGLRIGLVFQSAALFDS--------- 181 (352)
Q Consensus 150 i~G~~~~~~~~--~~-------------------~------------------~~~~~ig~v~Q~~~l~~~--------- 181 (352)
++..++..... .. . ......|+++|+..+++.
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 44433321100 00 0 001135788887766553
Q ss_pred -----------------------CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHH
Q 018638 182 -----------------------LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 182 -----------------------lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaI 237 (352)
+||.|++.|... . + ...++.++|+.+||.. .+++++.+|||||||||+|
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~-~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~L 816 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I-P--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKL 816 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C-H--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHH
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c-h--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHH
Confidence 678888876321 1 1 1245678999999975 5689999999999999999
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE-
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL- 316 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL- 316 (352)
||||+++ ..+|+||||||||+|||+..+..++++|++++++| .|||+||||++++.. ||+|++|
T Consensus 817 AraL~~~----p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G----------~TVIvI~HdL~~i~~-ADrIivLg 881 (916)
T 3pih_A 817 ASELRKR----DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG----------NTVIVIEHNLDVIKN-ADHIIDLG 881 (916)
T ss_dssp HHHHTSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHTT-CSEEEEEE
T ss_pred HHHHhhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------CEEEEEeCCHHHHHh-CCEEEEec
Confidence 9999863 12468999999999999999999999999998777 599999999999865 9999999
Q ss_pred -----eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 317 -----YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 317 -----~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++|+|++.|+++++....+.++..++..
T Consensus 882 p~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 882 PEGGKEGGYIVATGTPEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp SSSGGGCCEEEEEESHHHHHSCTTCHHHHHHTT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCCchHHHHHHHh
Confidence 8999999999999887777888888753
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.1e-37 Score=328.74 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=167.5
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHH-HHcCC-------CC-----------------
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKI-IAGLL-------AP----------------- 143 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~-l~Gl~-------~p----------------- 143 (352)
...|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46799999985 26999999999999999999999999999996 77554 23
Q ss_pred -Cce-------EEEECCEeCCCCCCh---------hhhc---------c---------------------ceEEEEecCC
Q 018638 144 -DKG-------EVYIRGRKRAGLISD---------EEIS---------G---------------------LRIGLVFQSA 176 (352)
Q Consensus 144 -~~G-------~I~i~G~~~~~~~~~---------~~~~---------~---------------------~~ig~v~Q~~ 176 (352)
.+| .|.+++.++...... ...+ + ...|++..+.
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 467 688888766422110 0000 0 0122222222
Q ss_pred CCCC------------------------CCCHHHHHHhhhh----hcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCC
Q 018638 177 ALFD------------------------SLTVRENVGFLLY----ENSKMRDEQISELVKENLAAVGLKG-VEDRLPSEL 227 (352)
Q Consensus 177 ~l~~------------------------~lTV~eni~~~~~----~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~L 227 (352)
.+++ ..++.||+.+... .... .. . .+++.++|+.+||.. ..++++.+|
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~-~-~~~~~~~L~~~gL~~~~l~~~~~~L 731 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ES-A-IFRALDTLREVGLGYLRLGQPATEL 731 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SH-H-HHHHHHHHHHTTCTTSBTTCCGGGC
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-ch-H-HHHHHHHHHHcCCCcccccCCcccC
Confidence 2222 2455555432211 0111 11 2 245788999999987 468999999
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
||||||||+|||+|+++ ..+|+||||||||+|||+..+..++++|++++++| .|||+||||++++
T Consensus 732 SGGekQRv~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~tVIvisHdl~~i- 796 (842)
T 2vf7_A 732 SGGEAQRIKLATELRRS----GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG----------NTVIAVEHKMQVV- 796 (842)
T ss_dssp CHHHHHHHHHHHTTSSC----CSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-
T ss_pred CHHHHHHHHHHHHHHhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-
Confidence 99999999999999962 00379999999999999999999999999998877 5999999999999
Q ss_pred hhcCEEEEE------eCCeEEEeecccccccCCcHHHHHHh
Q 018638 308 RAVDRLIFL------YEGKIVWQGMTHEFTSSSNPIVQQFA 342 (352)
Q Consensus 308 ~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~~~~~~~ 342 (352)
..||||++| ++|+|++.|+++++......++..++
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 689999999 79999999999988654333333333
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=9.8e-37 Score=328.17 Aligned_cols=226 Identities=25% Similarity=0.326 Sum_probs=169.9
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC-------CCCce-------------E
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLL-------APDKG-------------E 147 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~-------~p~~G-------------~ 147 (352)
.+.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 627 ~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 627 GRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp SCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred ceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 35799999963 4799999999999999999999999999999864 221 12233 4
Q ss_pred EEECCEeCCCCCC--hh-------hh--------ccceEEEEecCCCCCC------------------------------
Q 018638 148 VYIRGRKRAGLIS--DE-------EI--------SGLRIGLVFQSAALFD------------------------------ 180 (352)
Q Consensus 148 I~i~G~~~~~~~~--~~-------~~--------~~~~ig~v~Q~~~l~~------------------------------ 180 (352)
|.+++.++..... .. .. ..+.+||++|.+.+.+
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 7888876532111 00 00 0113578777543211
Q ss_pred ------------------------CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHH
Q 018638 181 ------------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRV 235 (352)
Q Consensus 181 ------------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRv 235 (352)
.+||.|++.|.. .. . .. +++.++|+.+||.. ..++++.+|||||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~----~~-~-~~-~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv 854 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA----SI-P-KI-KRKLETLYDVGLGYMKLGQPATTLSGGEAQRV 854 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC----SC-H-HH-HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh----cc-h-hH-HHHHHHHHHcCCCcccccCchhhCCHHHHHHH
Confidence 357777776532 11 1 12 33568999999987 78999999999999999
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||+|+++ ..+|+||||||||+|||+..+..++++|+++.++| .|||+||||++++. .||||++
T Consensus 855 ~LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i~-~aDrIiv 919 (972)
T 2r6f_A 855 KLAAELHRR----SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG----------DTVLVIEHNLDVIK-TADYIID 919 (972)
T ss_dssp HHHHHHSSC----CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHT-TCSEEEE
T ss_pred HHHHHHhcC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHHH-hCCEEEE
Confidence 999999963 11369999999999999999999999999998776 59999999999974 7999999
Q ss_pred E------eCCeEEEeecccccccCCcHHHHHH
Q 018638 316 L------YEGKIVWQGMTHEFTSSSNPIVQQF 341 (352)
Q Consensus 316 L------~~G~iv~~g~~~~~~~~~~~~~~~~ 341 (352)
| ++|+|++.|+++++......++..+
T Consensus 920 L~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~ 951 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951 (972)
T ss_dssp ECSSSTTSCCSEEEEESHHHHHTCTTCHHHHH
T ss_pred EcCCCCCCCCEEEEecCHHHHHhCchhHHHHH
Confidence 9 7999999999988765433344433
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-41 Score=338.52 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=171.6
Q ss_pred cceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-E-EEECCEeCCCCCChhhhcc
Q 018638 89 DVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-E-VYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 89 ~~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~-I~i~G~~~~~~~~~~~~~~ 166 (352)
.+|++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. . +
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----------~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----------Q 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----------T
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----------c
Confidence 46799999999996 79999999999999999999999999999999999999 9 999982 1 2
Q ss_pred ceEEEEecCCCC---CCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH--H
Q 018638 167 LRIGLVFQSAAL---FDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS--I 241 (352)
Q Consensus 167 ~~ig~v~Q~~~l---~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA--L 241 (352)
++++|+||+..+ ++.+||+||+ |+.....+... .+++.++++.+|+.+..+ +.+|||||||||+|||| |
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 358999999853 4457999998 75432111111 123556788899988766 89999999999999999 9
Q ss_pred hccCCCCCCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH------HHHhhc
Q 018638 242 IFDNTKESVEPEV----LLYDE-PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS------TIRRAV 310 (352)
Q Consensus 242 ~~~~~~~a~~p~l----lLLDE-PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~------~i~~~a 310 (352)
+. +|++ ||||| ||++||+. ...+.++++++ + .|+|+||||++ ++..+|
T Consensus 253 ~~-------~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~----------~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 253 HL-------DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---N----------VNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HH-------CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---T----------CCEEEEECCSSCTHHHHHHHHHH
T ss_pred cc-------CcccCcceEEEeCCcccccChh-HHHHHHHHHHh---C----------CCEEEEEccCchhhhHHHHHHhc
Confidence 97 5999 99999 99999999 55555555443 3 48999999988 888999
Q ss_pred CE-----EEEEe-CCeEEEeecccccccCCcHHHHHHhcCC
Q 018638 311 DR-----LIFLY-EGKIVWQGMTHEFTSSSNPIVQQFASGS 345 (352)
Q Consensus 311 Dr-----v~vL~-~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 345 (352)
|| |++|+ +|+++ .|+++++....+..+++++.|.
T Consensus 312 dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 99 99999 99999 8987776444456677777654
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.1e-36 Score=324.25 Aligned_cols=228 Identities=24% Similarity=0.306 Sum_probs=168.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-c----CCC---CCceE-------------E
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-G----LLA---PDKGE-------------V 148 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-G----l~~---p~~G~-------------I 148 (352)
..|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|. |
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i 720 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLV 720 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEE
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEE
Confidence 5799999963 3799999999999999999999999999999853 2 222 23443 4
Q ss_pred EECCEeCCCCC--Chh-------hh--------ccceEEEEecCCCCC----------------------C---------
Q 018638 149 YIRGRKRAGLI--SDE-------EI--------SGLRIGLVFQSAALF----------------------D--------- 180 (352)
Q Consensus 149 ~i~G~~~~~~~--~~~-------~~--------~~~~ig~v~Q~~~l~----------------------~--------- 180 (352)
.+++.++.... +.. .. ..+.+||++|.+.+. +
T Consensus 721 ~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c 800 (993)
T 2ygr_A 721 RIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 800 (993)
T ss_dssp CCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTT
T ss_pred EecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhc
Confidence 44544432110 000 00 011257777754321 1
Q ss_pred -----------------------CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHH
Q 018638 181 -----------------------SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 181 -----------------------~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRva 236 (352)
.+||.|++.|.. .. . .. +++.++|+.+||.. ..++++.+|||||||||+
T Consensus 801 ~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~----~~-~-~~-~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~ 873 (993)
T 2ygr_A 801 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE----PI-A-GV-HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVK 873 (993)
T ss_dssp TTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST----TC-H-HH-HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHH
T ss_pred cccccchhhhhhhccCCCHHHHhhccHHHHHHHhh----cc-h-HH-HHHHHHHHHcCCCcccccCccccCCHHHHHHHH
Confidence 246677766532 11 1 12 33568899999987 789999999999999999
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||+|+.+ ..+|+||||||||+|||+..+..++++|++++++| .|||+||||++++ ..||||++|
T Consensus 874 LAraL~~~----p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G----------~TVIvisHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 874 LASELQKR----STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG----------NTVIVIEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp HHHHHSSC----CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHhC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC----------CEEEEEcCCHHHH-HhCCEEEEE
Confidence 99999963 11369999999999999999999999999998776 5999999999997 579999999
Q ss_pred ------eCCeEEEeecccccccCCcHHHHHHhcC
Q 018638 317 ------YEGKIVWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 317 ------~~G~iv~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++|+|++.|+++++......++..++..
T Consensus 939 ~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l~~ 972 (993)
T 2ygr_A 939 GPEGGAGGGTVVAQGTPEDVAAVPASYTGKFLAE 972 (993)
T ss_dssp ESSSTTSCSEEEEEECHHHHHHCTTCHHHHHHGG
T ss_pred CCCcCCCCCEEEEecCHHHHHhCCHHHHHHHHHH
Confidence 7999999999988765444455666544
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=8.4e-34 Score=280.46 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=146.6
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--------------------------------------CCce
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA--------------------------------------PDKG 146 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--------------------------------------p~~G 146 (352)
.+|+++||+|.+| +++|+||||||||||+++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5799999999999 999999999999999999988774 4578
Q ss_pred EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC---------------------CC-------
Q 018638 147 EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS---------------------KM------- 198 (352)
Q Consensus 147 ~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~---------------------~~------- 198 (352)
+++++|+++... .........+++++|+..++. .+..++..|.-.... ..
T Consensus 128 ~i~ing~~~~~~-~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 128 AARLSGEVVSVR-ELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEETTEEECHH-HHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEECCEECCHH-HHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999986421 112222334899999987764 355544433110000 00
Q ss_pred -------------------------------CHHHHHHHHHHHHHHcCCCcc-----------------------cc---
Q 018638 199 -------------------------------RDEQISELVKENLAAVGLKGV-----------------------ED--- 221 (352)
Q Consensus 199 -------------------------------~~~~~~~~v~~~l~~~gL~~~-----------------------~~--- 221 (352)
......+.+.+.++.+++... ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 001122344555666665320 11
Q ss_pred ----cCCCC-CChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 222 ----RLPSE-LSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 222 ----~~~~~-LSGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
+++.. |||||||||+||++|+. +| ++|||||||++||+..+..+.+.|+++. +| .
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~-------~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~----------~ 347 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DT----------R 347 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHH-------CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TT----------S
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHh-------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CC----------C
Confidence 11222 79999999999999997 58 9999999999999999999999999997 45 4
Q ss_pred EEEEEcCCHHHHHhhcCEEEEE----eCCeEEEee
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFL----YEGKIVWQG 325 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL----~~G~iv~~g 325 (352)
|||+||||++.+ .+|||+++| ++|+++...
T Consensus 348 ~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 348 QVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEEE
Confidence 999999999776 579999999 999987764
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.97 E-value=2e-30 Score=254.73 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=77.7
Q ss_pred ccCCCCCChHHHHHHHHHHHHh------ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 221 DRLPSELSGGMKKRVALARSII------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 221 ~~~~~~LSGGqrQRvaIArAL~------~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
++++.+|||||||||+|||||+ . +|++|||||||++||+..+..++++|+++.++| .
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~-------~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g----------~ 336 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASG-------RLDAFFIDEGFSSLDTENKEKIASVLKELERLN----------K 336 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTT-------TCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSS----------S
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccC-------CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC----------C
Confidence 5788999999999999999998 4 599999999999999999999999999997766 5
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
|||+||||++. ...|||+++|++|++++
T Consensus 337 tvi~itH~~~~-~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 337 VIVFITHDREF-SEAFDRKLRITGGVVVN 364 (365)
T ss_dssp EEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred EEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence 99999999998 56789999999999975
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=1.8e-34 Score=263.18 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=105.8
Q ss_pred EEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC
Q 018638 99 KSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL 178 (352)
Q Consensus 99 ~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l 178 (352)
|+|+++.+|++| ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. .... .+.+|||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~--~~~~-~~~~ig~v~q~~-- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR--PAVE-AGEKLGFLPGTL-- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE--CSCC-TTCCCCSSCC----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC--Cchh-hhcceEEecCCH--
Confidence 356777899996 89999999999999999999999999 999999943 22211 1111 133699999986
Q ss_pred CCCCCHHHHH-Hhhh----hhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 179 FDSLTVRENV-GFLL----YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 179 ~~~lTV~eni-~~~~----~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
+||+ .+.. ....... .+++.++++. ++ ||||||+|||||+. +|+
T Consensus 76 ------~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~-------~p~ 124 (208)
T 3b85_A 76 ------NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTL-------NDA 124 (208)
T ss_dssp ----------CTTTHHHHHHHTTTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCB-------CSE
T ss_pred ------HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhc-------CCC
Confidence 3444 2211 0001011 1235556665 44 99999999999997 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeE
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~i 321 (352)
+|||||||++ ++..++++|+++ ++| .||| ||||++++.. +..+++|..
T Consensus 125 lllLDEPts~----~~~~l~~~l~~l-~~g----------~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 125 FVILDEAQNT----TPAQMKMFLTRL-GFG----------SKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp EEEECSGGGC----CHHHHHHHHTTB-CTT----------CEEE-EEEC----------------CCH
T ss_pred EEEEeCCccc----cHHHHHHHHHHh-cCC----------CEEE-EECCHHHHhC----cCCCCCcHH
Confidence 9999999999 888999999988 555 5899 9999987653 444567754
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.5e-30 Score=250.86 Aligned_cols=205 Identities=24% Similarity=0.298 Sum_probs=130.1
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC------------------------------
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL------------------------------ 141 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~------------------------------ 141 (352)
|+++| .++|+ ++++|++.+| +++|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~-----~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~ 78 (322)
T 1e69_A 6 LYLKG-FKSFG-----RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSA 78 (322)
T ss_dssp EEEES-BTTBC-----SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEE
T ss_pred EEEeC-ceeec-----CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceE
Confidence 66777 34553 3578889999 99999999999999999999654
Q ss_pred --------------------CCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC----
Q 018638 142 --------------------APDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK---- 197 (352)
Q Consensus 142 --------------------~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~---- 197 (352)
.+.+|++++||++... ...... ...+++.+|+..+++..++.+++.........
T Consensus 79 ~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~-~~~~~~-~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 79 YVELVFEENGEEITVARELKRTGENTYYLNGSPVRL-KDIRDR-FAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECH-HHHHHH-TTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred EEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccH-HHHHHH-HHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 2345788899987521 111111 11355555554444323344433221100000
Q ss_pred --------CCHHHHHH---------------------HHHHHHHHcCC------CcccccCCCCCChHHHHHHHHHHHHh
Q 018638 198 --------MRDEQISE---------------------LVKENLAAVGL------KGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 198 --------~~~~~~~~---------------------~v~~~l~~~gL------~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
...+.+.+ ++.+.++. |+ .+..++++.+||||||||++|||||+
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~ 235 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFA 235 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHH
Confidence 00000111 11122322 22 12356678899999999999999997
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEE--EEEeCCe
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRL--IFLYEGK 320 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv--~vL~~G~ 320 (352)
.. ...+|++|||||||++||+..+..+.++|+++. ++ .|||+|||+.+ +..+||++ ++|.+|+
T Consensus 236 ~~---~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~----------~~vi~~tH~~~-~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 236 LM---EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KH----------TQFIVITHNKI-VMEAADLLHGVTMVNGV 300 (322)
T ss_dssp HT---TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TT----------SEEEEECCCTT-GGGGCSEEEEEEESSSC
T ss_pred Hh---ccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC----------CeEEEEECCHH-HHhhCceEEEEEEeCCE
Confidence 20 001589999999999999999999999999984 34 58999999965 56789987 8888885
Q ss_pred E
Q 018638 321 I 321 (352)
Q Consensus 321 i 321 (352)
.
T Consensus 301 s 301 (322)
T 1e69_A 301 S 301 (322)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=2.1e-30 Score=227.80 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=107.6
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCC-CCCCCHHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAAL-FDSLTVREN 187 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l-~~~lTV~en 187 (352)
||||+|++||+++|+||||||||||+|++.+ |...++ .... .|+++|++.- +...+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~---------~d~~----~g~~~~~~~~~~~~~~~~~~ 61 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS---------SDFC----RGLMSDDENDQTVTGAAFDV 61 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE---------HHHH----HHHHCSSTTCGGGHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc---------cHHH----HHHhcCcccchhhHHHHHHH
Confidence 6899999999999999999999999999653 211121 1111 2678887531 111122222
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHH
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPI 267 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~ 267 (352)
+.. .. +.....|.....+. ....|||||||++||||++. +|++|+|||||++||+.
T Consensus 62 ~~~---------------~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~-------~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 62 LHY---------------IV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHC-------FPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHH---------------HH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTC-------EEEEEEECCCHHHHHHH
T ss_pred HHH---------------HH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCC-------cEEEEEEeCCHHHHHHH
Confidence 211 11 22233455544443 35569999999999999986 69999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 268 ----------------ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 268 ----------------~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
....+++.|++++++| .|+|+||||++++..+ ++
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g----------~tvi~vtH~~~~~~~~-~~ 167 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG----------FRYVYILNSPEEVEEV-VF 167 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT----------CSEEEEECSHHHHHHE-EE
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC----------CcEEEEeCCHHHhhhh-hh
Confidence 5688999999998777 5999999999998764 44
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.95 E-value=1.3e-32 Score=248.33 Aligned_cols=178 Identities=13% Similarity=0.144 Sum_probs=127.5
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+++| .+|++||+++|+||||||||||+|+|+|+++. |.+++..... .. ....+.+++|+||++.+|+.+|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~-~~-~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTR-AP-RPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESS-CC-CTTCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEccccccc-CC-cccccCCCeeEecCHHHHHHHH
Confidence 457888 79999999999999999999999999999963 4444422111 01 1111235899999998888888
Q ss_pred HHHHHHhhhh-----hcCCCCHHHHHHHHHHH------HHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 184 VRENVGFLLY-----ENSKMRDEQISELVKEN------LAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 184 V~eni~~~~~-----~~~~~~~~~~~~~v~~~------l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
+.+|+.+... ...+.+.++..+++.+. ++.+|+..+.++++.+|| +|+. +|
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~-------~p 142 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLA-------PP 142 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEE-------CS
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEE-------CC
Confidence 8887643211 11123445555666665 677778778888999999 7876 59
Q ss_pred cEEEEeCCCCCC----CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 253 EVLLYDEPTAGL----DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 253 ~llLLDEPtsgL----D~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
++++|||||+++ |+..+.++.++++++.++ | .|+|+||||++++..+||||++|.
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g----------~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD----------FDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG----------SSEEEECSSHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc----------CcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999998 788999999999999754 4 599999999999999999999984
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.95 E-value=2.1e-31 Score=265.72 Aligned_cols=187 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh
Q 018638 104 KHILRGVSFKIRHGE--------------------AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE 163 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge--------------------~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~ 163 (352)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999987531
Q ss_pred hccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH--HHHHHHHHHHH
Q 018638 164 ISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGG--MKKRVALARSI 241 (352)
Q Consensus 164 ~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG--qrQRvaIArAL 241 (352)
+ .+|++|++ .++.+|+.||+.++. . ...+.++++.+++.+.. ..+. ||+| ||||++||+||
T Consensus 109 --~--~~~v~q~~-~~~~ltv~D~~g~~~---~-------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 --M--ERHPYKHP-NIPNVVFWDLPGIGS---T-------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --C--CCEEEECS-SCTTEEEEECCCGGG---S-------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHH
T ss_pred --e--eEEecccc-ccCCeeehHhhcccc---h-------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHH
Confidence 1 27899985 567789999886642 1 12367789999987653 3344 9999 99999999999
Q ss_pred hccCCC---CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcCCCCCCCCCCceEEEEEcCCHHH--HHhhcC
Q 018638 242 IFDNTK---ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH-----KKGENGLANPGNIASYVVVTHQHST--IRRAVD 311 (352)
Q Consensus 242 ~~~~~~---~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~-----~~g~~~~~~~~~~~tvIivTHdl~~--i~~~aD 311 (352)
++.... -..+|++++|||||+|||+..+.++++.|+++. +.|. +. ..+|+++||+++. +.++||
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~-----~~-~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI-----AE-PPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC-----SS-CCEEECCTTCTTSTTHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC-----CC-CcEEEEecCcCCccCHHHHHH
Confidence 860000 000499999999999999999999999999985 2220 00 0478899999987 889999
Q ss_pred EEE-EEeCCe
Q 018638 312 RLI-FLYEGK 320 (352)
Q Consensus 312 rv~-vL~~G~ 320 (352)
+|. .|..|+
T Consensus 246 ~I~~~Lpeg~ 255 (413)
T 1tq4_A 246 KLISDLPIYK 255 (413)
T ss_dssp HHHHHSCGGG
T ss_pred HHHHhCccch
Confidence 885 454553
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.95 E-value=2.5e-30 Score=248.21 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=145.8
Q ss_pred EEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEe
Q 018638 98 YKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVF 173 (352)
Q Consensus 98 s~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~ 173 (352)
...++....++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++
T Consensus 81 ~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 81 LEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp HHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 333444334567899999999999999999999999999999999999999999987643110 0111123599999
Q ss_pred cCCC-CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC
Q 018638 174 QSAA-LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP 252 (352)
Q Consensus 174 Q~~~-l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p 252 (352)
|++. +++.+|++||+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~-------~P 220 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------AP 220 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT-------CC
T ss_pred ecCCccCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc-------CC
Confidence 9998 88889999999886421 111 135677888888888999999 999999999986 69
Q ss_pred c--EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------CHHHHHhhcCEEEEEeCCe
Q 018638 253 E--VLLYDEPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------QHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 253 ~--llLLDEPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------dl~~i~~~aDrv~vL~~G~ 320 (352)
+ +|+|| ||+|||+..+ +++++++ | .|+|++|| .++.+....+.|.++..|+
T Consensus 221 ~e~lLvLD-ptsglD~~~~------~~~~~~~~g----------~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 221 NEILLVLD-GNTGLNMLPQ------AREFNEVVG----------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp SEEEEEEE-GGGGGGGHHH------HHHHHHHTC----------CCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CeeEEEEe-CCCCcCHHHH------HHHHHHhcC----------CCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9 99999 9999999865 3455543 4 58999999 7778888889999999997
Q ss_pred E
Q 018638 321 I 321 (352)
Q Consensus 321 i 321 (352)
.
T Consensus 284 ~ 284 (302)
T 3b9q_A 284 A 284 (302)
T ss_dssp S
T ss_pred C
Confidence 5
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=8.2e-29 Score=220.23 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
.++|+||||||||||+|+|+|++. |.++|.+....... ..+.++||++|++ ++.+|+ +.. . ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~--~~~~~ig~~~~~~------~~~~~~-~~~--~-~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDP--ETKKRTGFRIITT------EGKKKI-FSS--K-FF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC--------CCEEEEEET------TCCEEE-EEE--T-TC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccc--cccceeEEEeecC------cHHHHH-HHh--h-cC
Confidence 589999999999999999999985 55666543111000 1133699999986 222332 110 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHH-----HhccCCCCCCCCcEEEEeC--CCCCCCHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARS-----IIFDNTKESVEPEVLLYDE--PTAGLDPIASTV 271 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArA-----L~~~~~~~a~~p~llLLDE--PtsgLD~~~~~~ 271 (352)
. -....++++.+||||||||++|||| |+. +|++||||| ||++||+..+..
T Consensus 65 ~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~-------~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 T----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKD-------RRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp C----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHC-------TTCEEEECCCSTTGGGCHHHHHH
T ss_pred C----------------ccccccccccCcCHHHHHHHHHHhhcccccccc-------CCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0145778899999999999999996 886 699999999 999999999998
Q ss_pred HHHHHHHHHHcCCCCCCCCCCceEEEEEc---CCHHHHHhhcCEEEEEeCCeEEE
Q 018638 272 VEDLIRSVHKKGENGLANPGNIASYVVVT---HQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 272 l~~ll~~l~~~g~~~~~~~~~~~tvIivT---Hdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+.+++.+ .+ .|+|++| ||++++..+||| .+|++++
T Consensus 122 l~~~l~~---~~----------~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PN----------VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TT----------SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CC----------CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8888865 23 4688888 599999999998 5677765
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.94 E-value=2.8e-32 Score=262.22 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=150.4
Q ss_pred hhhhhhhccCCCcchhhhHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcceEEEEeEEEE
Q 018638 21 SRLSTLANSGKKPINSFYYKAKEEQRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEPEDDGDVLIDCRNVYKS 100 (352)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nls~~ 100 (352)
.++..++.+. ..+.....+.+|+......|+...... . .......+|+++||+|+
T Consensus 56 ~~v~~~~~~~-----~~~~~a~~a~~ri~~~l~~~~~~~~~~-~-------------------~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 56 KHVKDCATMV-----RHYLRAETQALSMPAYIKARCKLATGE-G-------------------SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHSCHHHHHHHHHHHCCSS-C-------------------CTHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccCCC-C-------------------cccccCCeEEEEEEEEE
Confidence 4555555555 566667777777777766543111000 0 00001125889999999
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.+|+
T Consensus 111 y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------------------~~v~q~~~lf~ 166 (305)
T 2v9p_A 111 TF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------------------SFANHKSHFWL 166 (305)
T ss_dssp HH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------------------CGGGTTSGGGG
T ss_pred cC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------------------EEecCcccccc
Confidence 98 77999999999999999999999999999999999999 78883 46678888887
Q ss_pred CCCHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 181 SLTVRE-NVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 181 ~lTV~e-ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
.|+++ ||.+... ... .+.+.++.+ |.+.++ +..|||||||| ||||++ +|+|||
T Consensus 167 -~ti~~~ni~~~~~----~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~-------~p~iLl--- 220 (305)
T 2v9p_A 167 -ASLADTRAALVDD----ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIK-------APPLLV--- 220 (305)
T ss_dssp -GGGTTCSCEEEEE----ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEEC-------CCCEEE---
T ss_pred -ccHHHHhhccCcc----ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhC-------CCCEEE---
Confidence 48887 8876421 111 244555554 444444 88999999999 999997 599999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|++||+.++..+. . . ||+++.+ ..||+| +|++|+|++.|+++++
T Consensus 221 -Ts~LD~~~~~~i~--------~-----------l-----tH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 -TSNIDVQAEDRYL--------Y-----------L-----HSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp -EESSCSTTCGGGG--------G-----------G-----TTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred -ECCCCHHHHHHHH--------H-----------H-----hCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 9999999886664 1 1 7887765 478999 9999999999987765
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=1.4e-30 Score=261.83 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=154.8
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE---eCCCCC---Chh
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR---KRAGLI---SDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~---~~~~~~---~~~ 162 (352)
++++++|+++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++.... ...
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999998 67899999 999999999999999999999999999999999999999997 332110 001
Q ss_pred hhccceEEEEecC-CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQS-AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~~~~ig~v~Q~-~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL 241 (352)
...++.|+|++|+ ..+++.+|+.+|+.+....+... .-....+++ .+..||+|| |||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~--------------~~~v~~~ld-~l~~lS~g~-qrvslA--- 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR--------------GQHVLLIMD-SLTRYAMAQ-REIALA--- 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--------------TCEEEEEEE-CHHHHHHHH-HHHHHH---
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--------------CCCHHHHHH-hHHHHHHHH-HHHHHH---
Confidence 1123469999995 55677789999998754221100 001112222 367899999 999999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CCCCCCCCCCce-----EEEEEcCCHHHHHhhcCE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~---~-g~~~~~~~~~~~-----tvIivTHdl~~i~~~aDr 312 (352)
+. +|++ |+|||+..+..+.+++.++.+ + | . ||+++|||++ ..+||+
T Consensus 270 l~-------~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~G----------siT~~~tVlv~tHdl~--~~iad~ 324 (438)
T 2dpy_A 270 IG-------EPPA------TKGYPPSVFAKLPALVERAGNGIHGGG----------SITAFYTVLTEGDDQQ--DPIADS 324 (438)
T ss_dssp TT-------CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSC----------EEEEEEEEECSSSCSC--CHHHHH
T ss_pred hC-------CCcc------cccCCHHHHHHHHHHHHHHHhccCCCC----------cccceeEEEEeCCCcc--chhhce
Confidence 43 6888 999999999999999998865 2 3 3 8999999999 678999
Q ss_pred EEEEeCCeEEEeecccccc
Q 018638 313 LIFLYEGKIVWQGMTHEFT 331 (352)
Q Consensus 313 v~vL~~G~iv~~g~~~~~~ 331 (352)
+++|.+|+|+.++++.++.
T Consensus 325 v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHSSEEEEECHHHHHTT
T ss_pred EEEEeCcEEEEeCCHHHcc
Confidence 9999999999999877653
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=1.3e-28 Score=241.68 Aligned_cols=177 Identities=17% Similarity=0.161 Sum_probs=143.4
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEecCCC-CCCCC
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAA-LFDSL 182 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~Q~~~-l~~~l 182 (352)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+..+.+|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999988643110 01112236999999998 88889
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEeCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYDEP 260 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLDEP 260 (352)
|+++|+.++... ... ..+++.+|+.+..++++.+|| |||++|||||+. +|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~-------~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG-------APNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTT-------CCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhc-------CCCceEEEEc-C
Confidence 999999886421 111 124667888888888899999 999999999986 699 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------CHHHHHhhcCEEEEEeCCeE
Q 018638 261 TAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------QHSTIRRAVDRLIFLYEGKI 321 (352)
Q Consensus 261 tsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------dl~~i~~~aDrv~vL~~G~i 321 (352)
|+|||+..+. +++.+. + .|+|++|| .++.+....+.|.++..|+.
T Consensus 287 ttglD~~~~~------~~~~~~~g----------~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVG----------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTC----------CCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH------HHHHHhcC----------CeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998652 445543 4 59999999 57788888899999999964
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=1.1e-30 Score=238.48 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=120.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
...|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+........ ..+.+++|+||++.+|+.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKRE-KEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCS-SCCBTTTBEECCHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCc-ccccCCeEEECCHHHHHHhh
Confidence 34799999999999999999999999999999999999 6 99999 76653221111 11235899999987776443
Q ss_pred -HHHHHHhhhh--hcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH-----HHHHhccCCCCCCCCcEE
Q 018638 184 -VRENVGFLLY--ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL-----ARSIIFDNTKESVEPEVL 255 (352)
Q Consensus 184 -V~eni~~~~~--~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI-----ArAL~~~~~~~a~~p~ll 255 (352)
+.+++.++.. ...+.+. ..++++++...+. ..+ .+|||||+||++| ||+|+. +|+++
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~-------~~~~~ 149 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIK-------PPSTD 149 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEE-------CSCHH
T ss_pred hccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEe-------CcCHH
Confidence 1122211100 0111122 2355666654432 222 6799999999999 899986 59999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 256 LYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 256 LLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
+|||||+++|..+...+.+.|.++.++-. .+.+ ...+.|+++||++++...+++++.
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~--~~h~-~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH--EANL-LNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH--HHTT-SCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hhcc-cCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999888887654300 0000 004678888998888887777654
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.92 E-value=4.9e-28 Score=228.71 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=98.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..+..++|++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH
Confidence 3899999999999999999999999999999999876321 12346999999999999999999998865322211
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
..+ .+.+.+. ..+.++++.+||||||||++||||++ .++++|||+.+||+.. .++++.
T Consensus 79 ~~~----~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~----------~lllldep~~gL~~lD----~~~l~~ 136 (270)
T 3sop_A 79 CWE----PIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC----------CLYFISPTGHSLRPLD----LEFMKH 136 (270)
T ss_dssp CSH----HHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE----------EEEEECCCSSSCCHHH----HHHHHH
T ss_pred HHH----HHHHHHH----HHHHhhhHHhcCcccchhhhhheeee----------eeEEEecCCCcCCHHH----HHHHHH
Confidence 112 2333332 45667778899999999999999985 4999999999999987 455666
Q ss_pred HHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 279 VHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 279 l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+.+. .+||+|.|..+.
T Consensus 137 L~~~-----------~~vI~Vi~K~D~ 152 (270)
T 3sop_A 137 LSKV-----------VNIIPVIAKADT 152 (270)
T ss_dssp HHTT-----------SEEEEEETTGGG
T ss_pred HHhc-----------CcEEEEEecccc
Confidence 6544 378888777653
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1.2e-27 Score=232.10 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=113.2
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++++ | ..+++++||+|++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... . . .+..+++++
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~-~-~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--K-H-HKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--S-S-CSSEEEEEC
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--c-c-chhEEEEEe
Confidence 344444 4 4489999999999999999999999999999999999999999999998642211 1 0 122466654
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
| |||+||++|||||.. +|+
T Consensus 224 g------------------------------------------------------gg~~~r~~la~aL~~-------~p~ 242 (330)
T 2pt7_A 224 G------------------------------------------------------GNITSADCLKSCLRM-------RPD 242 (330)
T ss_dssp B------------------------------------------------------TTBCHHHHHHHHTTS-------CCS
T ss_pred C------------------------------------------------------CChhHHHHHHHHhhh-------CCC
Confidence 1 899999999999986 699
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
+|||||||+ .++.++|+.+...+ .|+|+++|+++ +...|||+++|.+|+
T Consensus 243 ilildE~~~-------~e~~~~l~~~~~g~----------~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 243 RIILGELRS-------SEAYDFYNVLCSGH----------KGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEECCCCS-------THHHHHHHHHHTTC----------CCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred EEEEcCCCh-------HHHHHHHHHHhcCC----------CEEEEEEcccH-HHHHhhhheehhcCC
Confidence 999999998 23567777775432 47999999999 667789999999885
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.92 E-value=3.6e-29 Score=241.18 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=136.9
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFK-----------------------IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~-----------------------i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~ 147 (352)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+.|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 589999999995 567777764 8999999999999999999999999999997553
Q ss_pred EEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCC
Q 018638 148 VYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSEL 227 (352)
Q Consensus 148 I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L 227 (352)
.+++||+|++.+++. |+.||+.+.. ..+.+.....+.+.+.++.++ .+..+.++.+|
T Consensus 121 -------------------~~v~~v~qd~~~~~~-t~~e~~~~~~--~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~l 177 (312)
T 3aez_A 121 -------------------PRVDLVTTDGFLYPN-AELQRRNLMH--RKGFPESYNRRALMRFVTSVK-SGSDYACAPVY 177 (312)
T ss_dssp -------------------CCEEEEEGGGGBCCH-HHHHHTTCTT--CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEE
T ss_pred -------------------CeEEEEecCccCCcc-cHHHHHHHHH--hcCCChHHHHHHHHHHHHHhC-CCcccCCcccC
Confidence 158999999999987 9999986532 112222222345677888887 55566778899
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH-
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI- 306 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i- 306 (352)
||||+||+++|||++. +|+|||||||+..+|+.. ..+.+.- -..|+|+|+.+..
T Consensus 178 S~G~~qRv~~a~al~~-------~p~ilIlDep~~~~d~~~--------~~l~~~~----------D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVR-------HPDILILEGLNVLQTGPT--------LMVSDLF----------DFSLYVDARIEDIE 232 (312)
T ss_dssp ETTTTEEEEEEEEEEC-------SCSEEEEECTTTTCCCSS--------CCGGGGC----------SEEEEEEECHHHHH
T ss_pred ChhhhhhhhhHHHhcc-------CCCEEEECCccccCCcch--------HHHHHhc----------CcEEEEECCHHHHH
Confidence 9999999999999996 699999999999998621 1122221 1468888888764
Q ss_pred HhhcCEEEEEeCCe
Q 018638 307 RRAVDRLIFLYEGK 320 (352)
Q Consensus 307 ~~~aDrv~vL~~G~ 320 (352)
.++.+|.+.+.+|+
T Consensus 233 ~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 233 QWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHhcc
Confidence 44567766666664
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=1.3e-24 Score=213.31 Aligned_cols=84 Identities=29% Similarity=0.171 Sum_probs=75.1
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 018638 223 LPS-ELSGGMKKRVALARSII---------FDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGN 292 (352)
Q Consensus 223 ~~~-~LSGGqrQRvaIArAL~---------~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~ 292 (352)
++. .||||||||++||++|+ . +|+||||||||++||+..+..+++.|.++.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~-------~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~------------ 321 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFG-------EDPVLLLDDFTAELDPHRRQYLLDLAASVP------------ 321 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHS-------SCCEEEECCGGGCCCHHHHHHHHHHHHHSS------------
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccC-------CCCEEEEeCccccCCHHHHHHHHHHHHhcC------------
Confidence 445 79999999999999999 5 599999999999999999999999998764
Q ss_pred ceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 293 IASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 293 ~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
.|+|++||. +. .||++++|++|+|+..|+++++
T Consensus 322 -qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 322 -QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred -cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence 289999994 44 7899999999999999988776
No 82
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.91 E-value=3.5e-26 Score=250.00 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=127.0
Q ss_pred cceEEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 89 DVLIDCRN-----VYKSF-GEKHILRGVSFKIRH-------GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 89 ~~~l~~~n-----ls~~y-~~~~~L~~vsl~i~~-------Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
..+|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 45799999 99999 677899999999987 999999999999999999999 99864
Q ss_pred CCCCChhhhccceEE-EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH
Q 018638 156 AGLISDEEISGLRIG-LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 156 ~~~~~~~~~~~~~ig-~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR 234 (352)
.. ++| ||||++. .+||.++|.. ++|+.+...+..+++|+++++
T Consensus 815 --------~a--qiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MA--QMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSGESTFFVELSE- 858 (1022)
T ss_dssp --------HH--TTTCCEESSEE---EECCCSBEEE----------------------ECC---------CHHHHHHHH-
T ss_pred --------Hh--heeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhchhhhHHHHHH-
Confidence 01 355 9999863 3566666521 123333333455778888775
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIAS-TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~-~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
+++|++++. +|+++||||||+|+|+... ..++++|+.++++ | .++|++||+++++..++|+
T Consensus 859 ~a~al~la~-------~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g----------~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 859 TASILMHAT-------AHSLVLVDELGRGTATFDGTAIANAVVKELAETIK----------CRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHCC-------TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC----------CEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHhCC-------CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC----------CEEEEEeCCHHHHHHhCCc
Confidence 999999986 6999999999999999884 5578999999876 5 5999999999999999999
Q ss_pred EEEEeCCeEE
Q 018638 313 LIFLYEGKIV 322 (352)
Q Consensus 313 v~vL~~G~iv 322 (352)
+.++ +|++.
T Consensus 922 ~~v~-~g~~~ 930 (1022)
T 2o8b_B 922 VAVR-LGHMA 930 (1022)
T ss_dssp SSEE-EEEEE
T ss_pred ceee-cCeEE
Confidence 9887 48876
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.91 E-value=3.8e-27 Score=230.23 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=144.5
Q ss_pred ceEEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC------CChh
Q 018638 90 VLIDCRNVYKSFG-EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL------ISDE 162 (352)
Q Consensus 90 ~~l~~~nls~~y~-~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~------~~~~ 162 (352)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~- 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ- 121 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH-
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh-
Confidence 4588999999998 67899999 99999999999999999999999999999999999999988752100 001
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHHHH
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALARSI 241 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIArAL 241 (352)
......+.+++|.. .+..+.+...... -.+.+.+...+-+- ..-+.+..||+|| |||++|
T Consensus 122 ~~~~~~v~~~~~~~-----~~~~~r~~~~~~~----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD-----RPALERMKAAFTA----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp HHHTTEEEEEECTT-----SCHHHHHHHHHHH----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hhhhceEEEEECCC-----CCHHHHHHHHHHH----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 11123578888753 2333433221100 00111111112110 1115688999999 899999
Q ss_pred hccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-CCCCCCCCCCce-----EEEEEcCCHHHHHhhcCEEE
Q 018638 242 IFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK-K-GENGLANPGNIA-----SYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 242 ~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~-~-g~~~~~~~~~~~-----tvIivTHdl~~i~~~aDrv~ 314 (352)
+. +|++ |+|||+.....+.+++.++.+ + | . ||+++|||++ ..+||+++
T Consensus 183 l~-------~p~~------t~Gldp~~~~~l~~ller~~~~~~G----------siT~~~tVl~~thdl~--~~i~d~v~ 237 (347)
T 2obl_A 183 SG-------EPDV------RGGFPPSVFSSLPKLLERAGPAPKG----------SITAIYTVLLESDNVN--DPIGDEVR 237 (347)
T ss_dssp TT-------CCCC------BTTBCHHHHHHHHHHHTTCEECSSS----------EEEEEEEEECCSSCCC--CHHHHHHH
T ss_pred cC-------CCCc------ccCCCHHHHHHHHHHHHHHhCCCCC----------CeeeEEEEEEeCCCCC--ChhhhheE
Confidence 33 5887 999999999999999999864 2 3 5 8999999999 67899999
Q ss_pred EEeCCeEEEeeccccc
Q 018638 315 FLYEGKIVWQGMTHEF 330 (352)
Q Consensus 315 vL~~G~iv~~g~~~~~ 330 (352)
+|.+|+|+.+++.++.
T Consensus 238 ~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 238 SILDGHIVLTRELAEE 253 (347)
T ss_dssp HHCSEEEEBCHHHHTT
T ss_pred EeeCcEEEEeCCHHHc
Confidence 9999999999987775
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=1.9e-28 Score=250.86 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=129.5
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKI--IAGLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~--l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.+++.+++.+.+++.++|++||| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++.. .......
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~---~~~~~~~ 87 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP---QDIIKNA 87 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH---HHHHHHH
Confidence 34666777766677889999999 999999999999999999999999 78999999999999997621 1111122
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.++||+||++...+ |+.+ ... ...+ ...++++.+++.++.++.+.+||||
T Consensus 88 ~~~g~~~q~~~~~~------~l~~-~~~---~~~~----~~~~~l~~~~l~~~~~~~~~~LS~g---------------- 137 (525)
T 1tf7_A 88 RSFGWDLAKLVDEG------KLFI-LDA---SPDP----EGQEVVGGFDLSALIERINYAIQKY---------------- 137 (525)
T ss_dssp GGGTCCHHHHHHTT------SEEE-EEC---CCCS----SCCSCCSSHHHHHHHHHHHHHHHHH----------------
T ss_pred HHcCCChHHhhccC------cEEE-Eec---Cccc----chhhhhcccCHHHHHHHHHHHHHHc----------------
Confidence 35899999864321 1111 000 0000 0111223333333344444444443
Q ss_pred CCCCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH---------HhhcCE
Q 018638 247 KESVEPEVLLYDEPTA-----GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAVDR 312 (352)
Q Consensus 247 ~~a~~p~llLLDEPts-----gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i---------~~~aDr 312 (352)
+|+++++||||+ +||+..+..+++++++++++| +|||++||+++++ ..+||+
T Consensus 138 ----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g----------~tvl~itH~~~~~~~~~~~~i~~~laD~ 203 (525)
T 1tf7_A 138 ----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG----------ATTVMTTERIEEYGPIARYGVEEFVSDN 203 (525)
T ss_dssp ----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT----------CEEEEEEECSSSSSCSSTTSCHHHHCSE
T ss_pred ----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCC----------CEEEEEecCCCCccccccccceeeeeeE
Confidence 488999999998 469999999999999998877 6999999999984 566999
Q ss_pred EEEEeC
Q 018638 313 LIFLYE 318 (352)
Q Consensus 313 v~vL~~ 318 (352)
|++|++
T Consensus 204 vi~L~~ 209 (525)
T 1tf7_A 204 VVILRN 209 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999998
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.7e-25 Score=238.11 Aligned_cols=177 Identities=28% Similarity=0.382 Sum_probs=135.3
Q ss_pred HHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC----CC----HHHH
Q 018638 132 TILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK----MR----DEQI 203 (352)
Q Consensus 132 TLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~----~~----~~~~ 203 (352)
|...|..+.+.|..|+|+|+|+++.. +..+++.+++.|....... .. .++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~---------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~ 441 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE---------------------FTELSISEELEFLKNLNLTEREREIVGELLKEI 441 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH---------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH---------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH
Confidence 34566677889999999999987521 2345677777663211000 00 1122
Q ss_pred HHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 204 SELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 204 ~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
+...+.|..+||... +++++.+|||||||||+|||||+.+ .+|.+|||||||+|||+.....++++|++|+++
T Consensus 442 -~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~-----p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 442 -EKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSG-----LTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp -HHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTT-----CCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred -HHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhC-----CCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 234567888999764 7899999999999999999999973 234599999999999999999999999999877
Q ss_pred CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCc-HHHHHHhcCCC
Q 018638 283 GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSN-PIVQQFASGSL 346 (352)
Q Consensus 283 g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~-~~~~~~~~~~~ 346 (352)
| .|||+||||++++.. ||+|++| ++|++++.|+++++..... ..+..++.+..
T Consensus 516 G----------~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~ 575 (916)
T 3pih_A 516 G----------NTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKR 575 (916)
T ss_dssp T----------CEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSS
T ss_pred C----------CEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhccc
Confidence 6 599999999998865 9999999 9999999999999765433 55666666543
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=1.3e-25 Score=212.72 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=126.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..+|+++++.|++|++++|+||||||||||++.|+|++.|++| .|.+.+.+. ...... .++.+++|+.. +
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~----~~~~~~-~r~~~~~~~~~----~ 92 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE----SVEETA-EDLIGLHNRVR----L 92 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS----CHHHHH-HHHHHHHTTCC----G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC----CHHHHH-HHHHHHHcCCC----h
Confidence 3579999999999999999999999999999999999999988 775544322 222221 13444444432 1
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH-HHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM-KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq-rQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
++.+++..+. .+.++..+.+.++++..++ .....+.++|.+| +||+. |+++.+ +|++||+||||
T Consensus 93 ~~~~~l~~~~-----~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~-------~p~llilDept 157 (296)
T 1cr0_A 93 RQSDSLKREI-----IENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGL-------GCDVIILDHIS 157 (296)
T ss_dssp GGCHHHHHHH-----HHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTT-------CCSEEEEEEEC
T ss_pred hhccccccCC-----CCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhc-------CCCEEEEcCcc
Confidence 2334444321 1222333444555443333 2344567899999 67776 888886 69999999999
Q ss_pred C---C---CCH-HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH--H--------------------HHHhhcC
Q 018638 262 A---G---LDP-IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--S--------------------TIRRAVD 311 (352)
Q Consensus 262 s---g---LD~-~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl--~--------------------~i~~~aD 311 (352)
+ + +|. .....+.+.|++++++ | +|||++||+. + .+..+||
T Consensus 158 ~~~~~~~~~d~~~~~~~i~~~L~~la~~~~----------~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 158 IVVSASGESDERKMIDNLMTKLKGFAKSTG----------VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHC----------CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 9 5 565 6678899999999765 5 6999999995 5 7888999
Q ss_pred EEEEEeCCeE
Q 018638 312 RLIFLYEGKI 321 (352)
Q Consensus 312 rv~vL~~G~i 321 (352)
+|++|++|+.
T Consensus 228 ~vi~L~~~~~ 237 (296)
T 1cr0_A 228 TIIALERNQQ 237 (296)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEecCcc
Confidence 9999998875
No 87
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=8.2e-24 Score=228.01 Aligned_cols=147 Identities=27% Similarity=0.416 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHhhhhhcCCCCH----------HHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+..+||.|+++|.- .. ..+. +++.+++ +.|..+||..+ +++.+.+|||||||||+||++|..+
T Consensus 449 ~~~ltV~e~~~f~e-~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~--- 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFD-GL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSR--- 522 (972)
T ss_dssp HHTSBHHHHHHHHH-HC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTC---
T ss_pred HhhCCHHHHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhC---
Confidence 34689999999943 22 2333 3455565 46899999865 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~i 321 (352)
..|++|||||||++||+.....++++|++|++.| .|||+|+||++++. .||||++| ++|++
T Consensus 523 --~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i 589 (972)
T 2r6f_A 523 --LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG----------NTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV 589 (972)
T ss_dssp --CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSE
T ss_pred --CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCC----------CEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEE
Confidence 1269999999999999999999999999998776 59999999999876 69999999 79999
Q ss_pred EEeecccccccCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++.|+++++.......+..++.+
T Consensus 590 v~~G~~~e~~~~~~slt~~~l~g 612 (972)
T 2r6f_A 590 VAAGTPEEVMNDPNSLTGQYLSG 612 (972)
T ss_dssp EEEECTTTTTTCTTCTTHHHHHT
T ss_pred EEecCHHHHHhhhHHHHHHHhcC
Confidence 99999999865333333344444
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.90 E-value=4.1e-25 Score=226.17 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=133.3
Q ss_pred eEEEEeEEEEeCCeeeeEee-eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 91 LIDCRNVYKSFGEKHILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+++++++..|++ |+.+ +..|++|++++|+||||||||||+++++|+.+|+ |+ . .+
T Consensus 257 ~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~-------------vi 313 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------R-------------AI 313 (525)
T ss_dssp CCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------C-------------EE
T ss_pred ccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------C-------------EE
Confidence 3566777655533 2222 4499999999999999999999999999998874 43 0 14
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
.|++|++. ..+.++... .+.+. .+ +...|+..+.++.|.+|||||+||+++|+++..
T Consensus 314 ~~~~ee~~----~~l~~~~~~-----~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~------ 370 (525)
T 1tf7_A 314 LFAYEESR----AQLLRNAYS-----WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDF------ 370 (525)
T ss_dssp EEESSSCH----HHHHHHHHT-----TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTT------
T ss_pred EEEEeCCH----HHHHHHHHH-----cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhh------
Confidence 56666641 133333311 11221 12 334677778889999999999999999999986
Q ss_pred CCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH----------HHHHhhcCEEE
Q 018638 250 VEPEVLLYDEPTAGLDPI-----ASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH----------STIRRAVDRLI 314 (352)
Q Consensus 250 ~~p~llLLDEPtsgLD~~-----~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl----------~~i~~~aDrv~ 314 (352)
+|++||+| ||++||+. .+..+.++++.+++.| .|||+|||+. ..+..+||+|+
T Consensus 371 -~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g----------~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 371 -KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEE----------ITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp -CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTT----------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred -CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCC----------CEEEEEECcccccCcccccCcccceeeeEEE
Confidence 69999999 99999999 9999999999998776 6999999999 78888999999
Q ss_pred EEeCCe
Q 018638 315 FLYEGK 320 (352)
Q Consensus 315 vL~~G~ 320 (352)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.90 E-value=7.1e-23 Score=198.62 Aligned_cols=80 Identities=28% Similarity=0.372 Sum_probs=70.5
Q ss_pred cccCCCCCChHHHH------HHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 220 EDRLPSELSGGMKK------RVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 220 ~~~~~~~LSGGqrQ------RvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
.++++.+||||||| |+++|++|+. +|++|||||||++||+..+..+.++|+++.++|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~-------~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~---------- 304 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 304 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTT-------TTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS----------
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC----------
Confidence 46788999999999 6677788875 699999999999999999999999999987666
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
.|||+||||.+ +..+||++++|+
T Consensus 305 ~~vi~~sH~~~-~~~~~d~~~~l~ 327 (339)
T 3qkt_A 305 PQVILVSHDEE-LKDAADHVIRIS 327 (339)
T ss_dssp SEEEEEESCGG-GGGGCSEEEEEE
T ss_pred CEEEEEEChHH-HHHhCCEEEEEE
Confidence 49999999965 577899999986
No 90
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.89 E-value=1.6e-23 Score=214.04 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCC-ChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 223 LPSEL-SGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 223 ~~~~L-SGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
++.+| ||||||||+|||||+. +| ++|||||||+|||+.++..+.++|+++++ | .|||+|
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~-------~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~----------~~vi~i 454 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVL-------GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-T----------RQVLVV 454 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHH-------CCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-H----------SEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHh-------CCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-C----------CEEEEE
Confidence 45677 9999999999999997 58 99999999999999999999999999986 4 599999
Q ss_pred cCCHHHHHhhcCEEEEEeCCe
Q 018638 300 THQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL~~G~ 320 (352)
||+++.+. .|||+++|+++.
T Consensus 455 tH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 455 THLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp CCCHHHHH-HSSEEEEEECCE
T ss_pred ecCHHHHH-hCCEEEEEeccc
Confidence 99999876 699999996653
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.89 E-value=3.4e-25 Score=204.82 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=107.3
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCC
Q 018638 101 FGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFD 180 (352)
Q Consensus 101 y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~ 180 (352)
-+++.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ . .+.+++|++|+. +++
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~-~~~~i~~v~~d~-~~~ 71 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------Q-RQRKVVILSQDR-FYK 71 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------G-GGCSEEEEEGGG-GBC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------c-cCCceEEEeCCc-Ccc
Confidence 35677999999999999999999999999999999999976 555443 1 123699999995 677
Q ss_pred CCCHHHHHHhhhhhcCCCCHH-HHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeC
Q 018638 181 SLTVRENVGFLLYENSKMRDE-QISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDE 259 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~-~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDE 259 (352)
.+|+.+|+.+....+....++ ...+.+.+.++.+ .+..++++.+||+||+||+++ ++++. +|+++|+||
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~-------~~~~lilDg 141 (245)
T 2jeo_A 72 VLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY-------PADVVLFEG 141 (245)
T ss_dssp CCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC-------CCSEEEEEC
T ss_pred ccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec-------CCCEEEEeC
Confidence 799999987754221101111 1122344455543 345567889999999999988 56664 699999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC-HHHHHhhcCEEEEEeCCe
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd-l~~i~~~aDrv~vL~~G~ 320 (352)
|....|.. +.++ .+ .+|+++||+ ......+++++ ++|+
T Consensus 142 ~~~~~~~~--------l~~~--~~----------~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 142 ILVFYSQE--------IRDM--FH----------LRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTTSHH--------HHTT--CS----------EEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccHH--------HHHh--cC----------eEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99888764 1222 13 599999997 44445555544 6664
No 92
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=3.3e-23 Score=222.11 Aligned_cols=190 Identities=20% Similarity=0.217 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHcCC---------CCCceEEEECCEeCCCCC--ChhhhccceEEEEec---CCCCCC----CCC-HH
Q 018638 125 PSGTGKSTILKIIAGLL---------APDKGEVYIRGRKRAGLI--SDEEISGLRIGLVFQ---SAALFD----SLT-VR 185 (352)
Q Consensus 125 pNGsGKSTLlk~l~Gl~---------~p~~G~I~i~G~~~~~~~--~~~~~~~~~ig~v~Q---~~~l~~----~lT-V~ 185 (352)
.+..||++|.+.+.... .|.+|+|.++|+++.... .-.+ .++++.| ++.... .++ ..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e----~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLAR----VSELLRPYAEEREPGHAERVKNRPEQ 345 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHH----HHHHHHHHHTTCSSCSTTSSSSCSSH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHH----HHHHHHhhhhhhhhcccchhhcchhh
Confidence 46679999999987743 456789999998764210 0001 1223332 221000 000 11
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCC--cEEEEeCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEP--EVLLYDEPTA 262 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p--~llLLDEPts 262 (352)
..+.+.+ .+++.+++. .|..+||... +++.+.+|||||||||+||++|.. +| .+|||||||+
T Consensus 346 ~~i~~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~-------~p~~~llILDEPT~ 410 (842)
T 2vf7_A 346 AIALQRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS-------NLFGVVYVLDEPSA 410 (842)
T ss_dssp HHHHHHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT-------CCCSCEEEEECTTT
T ss_pred HHHHHHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh-------CCCCeEEEeeCccc
Confidence 1222211 245666665 6889999865 799999999999999999999986 46 6999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeEEEeecccccccCCcH
Q 018638 263 GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKIVWQGMTHEFTSSSNP 336 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~iv~~g~~~~~~~~~~~ 336 (352)
+||+.....++++|++|++.| .|||+|+||++.+. .||+|++| ++|++++.|+++++......
T Consensus 411 ~Ld~~~~~~L~~~l~~L~~~G----------~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~ 479 (842)
T 2vf7_A 411 GLHPADTEALLSALENLKRGG----------NSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES 479 (842)
T ss_dssp TCCGGGHHHHHHHHHHHHTTT----------CEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC
T ss_pred cCCHHHHHHHHHHHHHHHHcC----------CEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH
Confidence 999999999999999998776 59999999999765 69999999 79999999999998754333
Q ss_pred HHHHHhcC
Q 018638 337 IVQQFASG 344 (352)
Q Consensus 337 ~~~~~~~~ 344 (352)
.+..++.+
T Consensus 480 ~~~~~l~~ 487 (842)
T 2vf7_A 480 QTGQYLFA 487 (842)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 44444443
No 93
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=1.3e-22 Score=219.43 Aligned_cols=147 Identities=25% Similarity=0.385 Sum_probs=118.8
Q ss_pred CCCCCHHHHHHhhhhhcCCCCH----------HHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 179 FDSLTVRENVGFLLYENSKMRD----------EQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 179 ~~~lTV~eni~~~~~~~~~~~~----------~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
|..+||.|+++|. . ..+.+. +++.+++ +.|..+||..+ +++.+.+|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~-e-nl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~--- 539 (993)
T 2ygr_A 466 VCELSIADCADFL-N-ALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSG--- 539 (993)
T ss_dssp SSHHHHHHHHHTT-T-TTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC---
T ss_pred HhhCCHHHHHHHH-H-hcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhC---
Confidence 4568999999993 2 222343 3455555 45889999865 7999999999999999999999863
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE------eCCeE
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL------YEGKI 321 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL------~~G~i 321 (352)
..|++|||||||++||+.....++++|++|++.| .|||+|+||++++. .||||++| ++|++
T Consensus 540 --~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G----------~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~i 606 (993)
T 2ygr_A 540 --LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLG----------NTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRI 606 (993)
T ss_dssp --CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTT----------CEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSC
T ss_pred --CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcC----------CEEEEECCCHHHHH-hCCEEEEecCccccCCCEE
Confidence 1268999999999999999999999999998877 59999999999876 69999999 79999
Q ss_pred EEeecccccccCCcHHHHHHhcC
Q 018638 322 VWQGMTHEFTSSSNPIVQQFASG 344 (352)
Q Consensus 322 v~~g~~~~~~~~~~~~~~~~~~~ 344 (352)
++.|+++++.......+..++.+
T Consensus 607 v~~G~~~e~~~~~~~lt~~~l~g 629 (993)
T 2ygr_A 607 VHSGPYDELLRNKDSITGAYLSG 629 (993)
T ss_dssp CEEECHHHHHHCTTCHHHHHHHT
T ss_pred EEeeCHHHhhhhhHHHHHHHhcc
Confidence 99999998865433344455544
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.88 E-value=3.2e-24 Score=195.89 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=112.6
Q ss_pred eEEEEeEEEEeCCeeeeEeeeE--EEeCCcEEEEEcCCCchHHHHHHHHH--cCCCCCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSF--KIRHGEAVGIIGPSGTGKSTILKIIA--GLLAPDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl--~i~~Ge~~~IiGpNGsGKSTLlk~l~--Gl~~p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
++++++++..|.+ |+.+ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.... .......
T Consensus 6 ~~~~~~i~tg~~~---lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 78 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA---RDLRREM 78 (251)
T ss_dssp --CCCEECCSCTT---TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH---HHHHHHH
T ss_pred ccccceeecCCHh---HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH---HHHHHHH
Confidence 4566666655543 4443 2 78999999999999999999999999 775677888888775421 0111111
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.++||++|+...++.+++.++...... ... ... .......+.++.++...+..-.
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~-------------~~~~~~~~~~~~~~~~~~~l~~---- 133 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVG----LPS----EEK-------------FVLEDRFNVDNFLRYIYRVVKA---- 133 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC----------------------------------------CCHHHHHHHHHHHHHH----
T ss_pred HHcCCChHHHhhcCCEEEEEccccccc----ccc----ccc-------------eeccCcccHHHHHHHHHHHHHh----
Confidence 246777776544444454444322110 000 000 0011122334433333333323
Q ss_pred CCCCCCcEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHH---------Hhhc-C
Q 018638 247 KESVEPEVLLYDEPTAGLD-----PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTI---------RRAV-D 311 (352)
Q Consensus 247 ~~a~~p~llLLDEPtsgLD-----~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i---------~~~a-D 311 (352)
.+|+++++||||++|| +..+..+.++++.++++| +|||++||+++.+ ..+| |
T Consensus 134 ---~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g----------~tii~vtH~~~~~~~~~~~~~i~~~~aD 200 (251)
T 2ehv_A 134 ---INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG----------VTTILTTEAPDPQHGKLSRYGIEEFIAR 200 (251)
T ss_dssp ---TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC----------CEEEEEECCC----CCSSSSSCGGGGCS
T ss_pred ---hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC----------CeEEEEECCCCCCcccccccChhhEeee
Confidence 3699999999999998 777777999999998877 6999999999998 6788 9
Q ss_pred EEEEEe
Q 018638 312 RLIFLY 317 (352)
Q Consensus 312 rv~vL~ 317 (352)
+|++|+
T Consensus 201 ~vi~l~ 206 (251)
T 2ehv_A 201 GVIVLD 206 (251)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999995
No 95
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.86 E-value=7.5e-25 Score=209.67 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=88.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL-LAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl-~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
+||+++|+++.++++++|+| +|+||||||||||+++|+|+ ..|++| |.++|.++.. ... ...+++++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~---t~~--~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER---TVQ--IEASTVEI 69 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------------CEEEE
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC---cce--EeeEEEEe
Confidence 48999999999999999998 99999999999999999998 889999 8888876532 111 12479999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
|...++..+||+|++.++.... ..+.....+.. +.+..++++.++|||||||+.+|||++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~---~~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----------- 129 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAIN---CRDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----------- 129 (301)
T ss_dssp C---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE-----------
T ss_pred cCCCcccCcchhhhhhhhhhcC---cHHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh-----------
Confidence 9888777889999887754211 00111111111 223456788899999999999988873
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 254 VLLYDEPTAG-LDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 254 llLLDEPtsg-LD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
+|++||||++ ||+... ++++++.++ + .++|+++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~----------iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVN----------IVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSC----------EEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCC----------EEEEEEeCCCC
Confidence 8999999985 999863 566666543 2 68999999984
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.86 E-value=2.9e-23 Score=187.24 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=100.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-------CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-------DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-------~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
-|++|++++|+||||||||||+++|+|+..| ..|.|++++++.. .. .++++++|+..+++. |+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~-----~~i~~~~~~~~~~~~-~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RP-----ERIREIAQNRGLDPD-EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CH-----HHHHHHHHHTTSCHH-HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CH-----HHHHHHHHHcCCCHH-HHh
Confidence 6899999999999999999999999996655 4457777775421 11 136677887777664 777
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+|+.+... .... .+++.+..+++++........+|+++++||||+++|
T Consensus 92 ~~~~~~~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 92 KHIYVARA----FNSN----------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp HTEEEEEC----CSHH----------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred hcEEEEec----CChH----------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 77654221 1111 111223333333320000013699999999999999
Q ss_pred HH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC----CHHHHHhhcCEEEEEeCCe
Q 018638 266 PI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTH----QHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 266 ~~-------~-----~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH----dl~~i~~~aDrv~vL~~G~ 320 (352)
+. . ...+++.|.++.++ | +|||+||| +-..+..+||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g----------~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT----------CEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCC----------CeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 2 23677777777654 5 69999999 4455999999999999763
No 97
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.85 E-value=2.8e-21 Score=192.84 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC
Q 018638 223 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 223 ~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
.+..||||||||++||++|+... ..+|+++||||||++||+..+..+.++|+++.+++ .++|+|||+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~---~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~----------~~~ii~th~ 396 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINS---YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD----------LQFIVISLK 396 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHT---SSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT----------BEEEEECSC
T ss_pred ccccCCcchHHHHHHHHHHHHhc---CCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCC----------CEEEEEECC
Confidence 34569999999999999998300 02599999999999999999999999999886444 589999999
Q ss_pred HHHHHhhcCEEEEEe
Q 018638 303 HSTIRRAVDRLIFLY 317 (352)
Q Consensus 303 l~~i~~~aDrv~vL~ 317 (352)
... ...||++++|.
T Consensus 397 ~~~-~~~~d~~~~~~ 410 (430)
T 1w1w_A 397 NTM-FEKSDALVGVY 410 (430)
T ss_dssp HHH-HTTCSEEEEEE
T ss_pred HHH-HHhCCEEEEEE
Confidence 765 45799999996
No 98
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.85 E-value=8.1e-23 Score=221.39 Aligned_cols=166 Identities=19% Similarity=0.149 Sum_probs=116.7
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHH--------HcCCCCCceEEEECCEeCCC
Q 018638 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKII--------AGLLAPDKGEVYIRGRKRAG 157 (352)
Q Consensus 91 ~l~~~nls~~y-----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l--------~Gl~~p~~G~I~i~G~~~~~ 157 (352)
.|++++...-+ ++..+++|++|++++|++++|+||||||||||||++ .|..-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 46666665433 235689999999999999999999999999999999 55444433211
Q ss_pred CCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 158 LISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 158 ~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
++++. +++.++|+. +.....+|+|++++..+
T Consensus 702 -----------~~~~d-----------------------------------~i~~~ig~~---d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 -----------VSIVD-----------------------------------CILARVGAG---DSQLKGVSTFMAEMLET 732 (934)
T ss_dssp -----------EECCS-----------------------------------EEEEECC------------CHHHHHHHHH
T ss_pred -----------chHHH-----------------------------------HHHHhcCch---hhHHHhHhhhHHHHHHH
Confidence 11100 001112222 12234578888888888
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEE
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIF 315 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~v 315 (352)
|+++.. +.+|+++||||||+|||+.....+ +.++..++++ | .++|++||+++.+ .+||++..
T Consensus 733 a~il~~-----a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g----------~~vl~aTH~~el~-~lad~~~~ 796 (934)
T 3thx_A 733 ASILRS-----ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG----------AFCMFATHFHELT-ALANQIPT 796 (934)
T ss_dssp HHHHHH-----CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTC----------CEEEEEESCGGGG-GGGGTCTT
T ss_pred HHHHHh-----ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC----------CEEEEEcCcHHHH-HHhcccce
Confidence 888722 137999999999999999988888 7778888764 5 5999999997765 68999999
Q ss_pred EeCCeEEEeeccccc
Q 018638 316 LYEGKIVWQGMTHEF 330 (352)
Q Consensus 316 L~~G~iv~~g~~~~~ 330 (352)
+++|++...++.+++
T Consensus 797 v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 797 VNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEEETTEE
T ss_pred eEeeEEEEEecCCcE
Confidence 999999988876654
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=1.1e-23 Score=197.87 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=102.3
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+++++|++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~------~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF------KHKKS 73 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC------CCSSS
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec------CCcce
Confidence 455666542 5899999 8999999999999999999999999999998 999999886542110 00122
Q ss_pred EEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 018638 171 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESV 250 (352)
Q Consensus 171 ~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~ 250 (352)
+++|. .+|++. ..| |++||+||..
T Consensus 74 ~v~q~-------------------------------------~~gl~~------~~l------~~~la~aL~~------- 97 (261)
T 2eyu_A 74 IVNQR-------------------------------------EVGEDT------KSF------ADALRAALRE------- 97 (261)
T ss_dssp EEEEE-------------------------------------EBTTTB------SCH------HHHHHHHHHH-------
T ss_pred eeeHH-------------------------------------HhCCCH------HHH------HHHHHHHHhh-------
Confidence 23221 233321 122 8999999997
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+|++||+|||| |+.+...+ ++. ...| .+|++++|+.+ +..+|||+++|.
T Consensus 98 ~p~illlDEp~---D~~~~~~~---l~~-~~~g----------~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 98 DPDVIFVGEMR---DLETVETA---LRA-AETG----------HLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp CCSEEEESCCC---SHHHHHHH---HHH-HHTT----------CEEEEEECCSS-HHHHHHHHHHTS
T ss_pred CCCEEEeCCCC---CHHHHHHH---HHH-HccC----------CEEEEEeCcch-HHHHHHHHhhhc
Confidence 59999999999 98886543 333 3445 58999999988 566788877664
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.85 E-value=3.2e-24 Score=223.55 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=118.5
Q ss_pred ceEEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCC
Q 018638 90 VLIDCRNVYKSFGE--KHILRGV----------SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRA 156 (352)
Q Consensus 90 ~~l~~~nls~~y~~--~~~L~~v----------sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~ 156 (352)
+.++++||++.|++ +++|+.+ +|+++. +||+||||||||||+++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999975 3355544 377765 999999999999999999999988 8999999998852
Q ss_pred CCCCh-hhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH
Q 018638 157 GLISD-EEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV 235 (352)
Q Consensus 157 ~~~~~-~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv 235 (352)
..... ....+.+|||+||++.+++.+||++|+.+......... .++ | ++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~--------------~~~-----------s---~~~i 137 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG--------------MGI-----------S---HELI 137 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------SCC-----------C---SCCE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------ccc-----------c---hHHH
Confidence 11000 01123369999999999999999999987532110000 011 1 1222
Q ss_pred HHHHHHhccCCCCCCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-----
Q 018638 236 ALARSIIFDNTKESVEPEVLLYDEP------TAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS----- 304 (352)
Q Consensus 236 aIArAL~~~~~~~a~~p~llLLDEP------tsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~----- 304 (352)
.++.+... .|+++|+||| |+|||+..+..+.++++++.++.. ..+++++||+++
T Consensus 138 ~l~i~~~~-------~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--------~iil~vvt~~~d~a~~~ 202 (608)
T 3szr_A 138 TLEISSRD-------VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--------TISLVVVPSNVDIATTE 202 (608)
T ss_dssp EEEEEESS-------SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--------CCEEEEEESSSCTTTCH
T ss_pred HHHhcCCC-------CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--------CCceEEEeccchhccHH
Confidence 23333332 5999999999 999999999999999999754421 168999999976
Q ss_pred ---HHHhh----cCEEEEEeCCeEEEeecccc
Q 018638 305 ---TIRRA----VDRLIFLYEGKIVWQGMTHE 329 (352)
Q Consensus 305 ---~i~~~----aDrv~vL~~G~iv~~g~~~~ 329 (352)
.+..+ ...|+|+.++.++..|+.++
T Consensus 203 ~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 203 ALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 33333 24588999988877775443
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.85 E-value=1.7e-23 Score=200.91 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=110.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh----hhccceEEEEecCCCCCCCCCHHHHHHhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE----EISGLRIGLVFQSAALFDSLTVRENVGFL 191 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~----~~~~~~ig~v~Q~~~l~~~lTV~eni~~~ 191 (352)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....... +..+.+|+|++|++.++|.+++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999875422111 11123599999999999988999999875
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHH
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTV 271 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~ 271 (352)
.... .. ..+++..|+.+...+.+.+|| +||++||||++. +|+.++| .||+.+...
T Consensus 181 ~~~~--~d--------~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~-------~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG--YD--------LLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPE-------EPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT--CS--------EEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTT-------CCSEEEE-----EEETTBCTH
T ss_pred HhCC--CC--------EEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcC-------CCCeEEE-----EEcHHHHHH
Confidence 4211 10 012334455443344445555 899999999986 5984444 455555555
Q ss_pred HHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH
Q 018638 272 VEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 272 l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~ 304 (352)
+++.++++.+. + .|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~----------~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVG----------LTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEECTTS
T ss_pred HHHHHHHHHHHcC----------CcEEEEECCcc
Confidence 66677777654 5 58999999843
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=1.8e-24 Score=194.22 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=116.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCC--CCCCHHHHHHhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF--DSLTVRENVGFL 191 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~--~~lTV~eni~~~ 191 (352)
.++|+++||+||||||||||+++|+|++.| +++|++|++.++ ..+|+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 578999999999999999999999998865 378999998776 567999987664
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH----HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC----
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM----KKRVALARSIIFDNTKESVEPEVLLYDEPTAG---- 263 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq----rQRvaIArAL~~~~~~~a~~p~llLLDEPtsg---- 263 (352)
+. .+.....+++.++++.+++.+..++++.++|+|| +||+++|++++. +|+++++||||++
T Consensus 59 ~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~-------~~~ll~~de~~~~~~d~ 127 (211)
T 3asz_A 59 YD----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVIL-------EGILVLYPKELRDLMDL 127 (211)
T ss_dssp TT----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEE-------ESTTTTSSHHHHTTCSE
T ss_pred CC----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEE-------eehhhccCHHHHHhcCE
Confidence 31 1111112346677888888888888899999997 478999999997 5999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHH
Q 018638 264 ---LDPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 264 ---LD~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
||+.....+.+.+.+.. ++| .|+++++|++.
T Consensus 128 ~i~ld~~~~~~~~r~l~r~~~~~g----------~t~~~~~~~~~ 162 (211)
T 3asz_A 128 KVFVDADADERFIRRLKRDVLERG----------RSLEGVVAQYL 162 (211)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHSC----------CCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhC----------CCHHHHHHHHH
Confidence 99999999999998864 445 58899999853
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.85 E-value=2.3e-22 Score=214.12 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=109.7
Q ss_pred eEEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEECCEeCCCCCChhhhcc
Q 018638 91 LIDCRNVYKSF---GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIRGRKRAGLISDEEISG 166 (352)
Q Consensus 91 ~l~~~nls~~y---~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~G~~~~~~~~~~~~~~ 166 (352)
.|++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+. . . .+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a---~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----A---EE 613 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----S---SE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----h---hc
Confidence 37777774433 446799999999 99999999999999999999999874 6777642 0 0 12
Q ss_pred ceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHH--hcc
Q 018638 167 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSI--IFD 244 (352)
Q Consensus 167 ~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL--~~~ 244 (352)
.++++++| +|+.+++.||+.. .+|+||+|++.+|+++ +.
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------------g~S~~~~e~~~la~il~~a~- 654 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAG-----------------------------------GKSTFMVEMEEVALILKEAT- 654 (765)
T ss_dssp EEECCCSE---EEEECCC-----------------------------------------CCSHHHHHHHHHHHHHHHCC-
T ss_pred cceeeHHH---hhccCCHHHHHHh-----------------------------------cccHHHHHHHHHHHHHHhcc-
Confidence 25888887 5666788887643 2588999999999999 64
Q ss_pred CCCCCCCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhc
Q 018638 245 NTKESVEPEVLLYDEP---TAGLDPIAS-TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAV 310 (352)
Q Consensus 245 ~~~~a~~p~llLLDEP---tsgLD~~~~-~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~a 310 (352)
+|+++||||| |++||+.+. ..+.+.|.+ .| .|+|++||+++.+. ++
T Consensus 655 ------~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g----------~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 655 ------ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RR----------AYTLFATHYFELTA-LG 704 (765)
T ss_dssp ------TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HT----------CEEEEECCCHHHHT-CC
T ss_pred ------CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CC----------CEEEEEeCCHHHHH-hh
Confidence 6999999999 999999876 467777665 44 59999999998764 44
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.84 E-value=7.3e-21 Score=164.50 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=74.4
Q ss_pred cccCCCCCChHHHHHHHHH------HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 220 EDRLPSELSGGMKKRVALA------RSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIA------rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
.++++.+||||||||++|| |||+. +|+++||||||+|||+.++..+.+.|.++.++|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~-------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~---------- 113 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAG-------EISLLILDEPTPYLDEERRRKLITIMERYLKKI---------- 113 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGS----------
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcC-------CCCEEEEECCCccCCHHHHHHHHHHHHHHHccC----------
Confidence 5678999999999999876 89986 599999999999999999999999999987665
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEE--eCCeE
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFL--YEGKI 321 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL--~~G~i 321 (352)
.|||+||||+ .+..+||++++| ++|..
T Consensus 114 ~tiiivsH~~-~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 114 PQVILVSHDE-ELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEESCG-GGGGGCSEEEEEEEETTEE
T ss_pred CEEEEEEChH-HHHHhCCEEEEEEcCCCeE
Confidence 5999999999 567899999999 45643
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.83 E-value=2.2e-21 Score=209.72 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=104.6
Q ss_pred eEEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChh
Q 018638 91 LIDCRNVYKSF-------GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDE 162 (352)
Q Consensus 91 ~l~~~nls~~y-------~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~ 162 (352)
.|.+++...-+ +++.+++||||++++|++++|+||||||||||||+++++.-. ..|. -+ ...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~v----pa~ 709 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YV----PAE 709 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CB----SSS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cc----cch
Confidence 47777665433 246799999999999999999999999999999999864311 1110 00 000
Q ss_pred hhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 163 EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 163 ~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
...++++. .+ +..+|+.+...+..+++|+||+|++.|+++ +
T Consensus 710 ---~~~i~~~d---~i--------------------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 710 ---EATIGIVD---GI--------------------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp ---EEEEECCS---EE--------------------------------EEEC----------CCHHHHHHHHHHHHHH-C
T ss_pred ---hhhhhHHH---HH--------------------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 00122110 01 122333334445567899999999999999 4
Q ss_pred ccCCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 243 FDNTKESVEPEVLLYDEPTAGLDPIASTVVE-DLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 243 ~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~-~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
. +|++|||||||+|||+.....+. .++..+.++ | .|+|++||+++.+ .+||+
T Consensus 751 ~-------~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g----------~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 751 T-------SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK----------SLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp C-------TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHH
T ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC----------CeEEEEeCcHHHH-HHHhh
Confidence 3 69999999999999999998887 778888653 5 6999999998776 35554
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=5.4e-23 Score=183.11 Aligned_cols=173 Identities=11% Similarity=0.083 Sum_probs=103.2
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCceEEEECCEeCCCCCChhhhc
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEIS 165 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~-----~p~~G~I~i~G~~~~~~~~~~~~~ 165 (352)
+|+++||+|.|+ ..++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+.+.-.. .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~----~---- 71 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV----A---- 71 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE----E----
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe----c----
Confidence 589999999997 467888 999999999999999999999999999998 788888765332100 0
Q ss_pred cceEEEEecCCCCC----CCCC---HHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHHHcCCCcc-cccCCCC
Q 018638 166 GLRIGLVFQSAALF----DSLT---VRENVGFLLYENS-----------KMRDEQISELVKENLAAVGLKGV-EDRLPSE 226 (352)
Q Consensus 166 ~~~ig~v~Q~~~l~----~~lT---V~eni~~~~~~~~-----------~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~ 226 (352)
. .+- +.+.+.+. +... .+..+...+.... ........+.+.++++..++... ...++..
T Consensus 72 ~-~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 72 D-GKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 149 (210)
T ss_dssp T-TEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred C-CEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence 0 011 11222111 0000 1111211110000 00011222345567777787653 3667889
Q ss_pred CChHHHHH-HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 018638 227 LSGGMKKR-VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 227 LSGGqrQR-vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g 283 (352)
+|+||+|| +..+++++. +|+++++|||||++|+....++++.|.++..++
T Consensus 150 ~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 150 LASGARKAQLNMVREAVL-------AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp SCHHHHHHHHHHHHHHHG-------GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCchhHHHHHHHHHHHHH-------hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999 899999986 488889999999999999999999999987654
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.81 E-value=4e-21 Score=205.51 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=113.7
Q ss_pred eEEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhh
Q 018638 91 LIDCRNVYKSF-----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEI 164 (352)
Q Consensus 91 ~l~~~nls~~y-----~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~ 164 (352)
.|.+++...=. +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+. .
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vp----a--- 642 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVP----A--- 642 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBS----S---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccc----h---
Confidence 36666543211 456799999999 99999999999999999999999997432 222 1111 1
Q ss_pred ccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhcc
Q 018638 165 SGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFD 244 (352)
Q Consensus 165 ~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~ 244 (352)
...++++++| +|+.+++.+|+..+ .+++|+++++...++ ..+.
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~--------------------------------~stf~~e~~~~~~il-~~a~- 685 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG--------------------------------RSTFMVEMTETANIL-HNAT- 685 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------------------------------------------CHHHHHHHHHHH-HHCC-
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh--------------------------------hhhhhHHHHHHHHHH-Hhcc-
Confidence 1124777766 56666777766432 123566776544433 3443
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEE
Q 018638 245 NTKESVEPEVLLYDEPTAGLDPIASTVV-EDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 245 ~~~~a~~p~llLLDEPtsgLD~~~~~~l-~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv 322 (352)
+|+++|||||++|+|+.....+ .+++..++++ | .++|++||+++.+ .+||++..+.+|++.
T Consensus 686 ------~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g----------~~vl~~TH~~el~-~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 686 ------EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK----------ALTLFATHYFELT-QLPEKMEGVANVHLD 748 (800)
T ss_dssp ------TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC----------CEEEEECSCGGGG-GHHHHSTTEEEEEEE
T ss_pred ------CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC----------CeEEEEeCCHHHH-HHhhhhhceEEEEEE
Confidence 6999999999999999877775 7888888874 5 5999999999875 488988778888776
Q ss_pred Eeec
Q 018638 323 WQGM 326 (352)
Q Consensus 323 ~~g~ 326 (352)
....
T Consensus 749 ~~~~ 752 (800)
T 1wb9_A 749 ALEH 752 (800)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.80 E-value=9.1e-22 Score=176.95 Aligned_cols=168 Identities=11% Similarity=0.050 Sum_probs=114.1
Q ss_pred eeeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhcc--ceEEEEecCCCCCC
Q 018638 104 KHILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFD 180 (352)
Q Consensus 104 ~~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~--~~ig~v~Q~~~l~~ 180 (352)
.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+.. ...... ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES----RDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC----HHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC----HHHHHHHHHHhcchHHHHhhC-
Confidence 457888887 89999999999999999999999999988888888877654321 111110 0123333321100
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc--EEEEe
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE--VLLYD 258 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~--llLLD 258 (352)
++.+ ...... .++ ..+. ....|.++.++...+.+... +|+ +|++|
T Consensus 84 ------~~~~----~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~llilD 130 (235)
T 2w0m_A 84 ------KLII----IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKL-------GYGKARLVID 130 (235)
T ss_dssp ------TEEE----EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHH-------CSSCEEEEEE
T ss_pred ------CEEE----Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhh-------CCCceEEEEE
Confidence 0000 000000 001 1111 12449999888877777654 599 99999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH--------HHHHhhcCEEEEEeCC
Q 018638 259 EPTAGL--DPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH--------STIRRAVDRLIFLYEG 319 (352)
Q Consensus 259 EPtsgL--D~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl--------~~i~~~aDrv~vL~~G 319 (352)
|||+.+ |+.....+++.|+++.++ | .|||++||+. ..+..+||+|++|+..
T Consensus 131 e~~~~~~~d~~~~~~~~~~l~~~~~~~~----------~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 131 SVSALFLDKPAMARKISYYLKRVLNKWN----------FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp TGGGGSSSCGGGHHHHHHHHHHHHHHTT----------EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CchHhhcCCHHHHHHHHHHHHHHHHhCC----------CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999888 999999999999998755 4 7999999999 5588999999999864
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.80 E-value=1.4e-21 Score=190.73 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=110.9
Q ss_pred eeeEee-eEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCc----eE-EEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGV-SFKIRHGEAVGIIGPSGTGKSTILKIIAGLL--APDK----GE-VYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~--~p~~----G~-I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
..|+.+ ++.|++|++++|+||||||||||++.++++. +|++ |+ |+|++++.. .+.++++++|..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--------~~~~i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--------RPERIREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--------CHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--------CHHHHHHHHHHc
Confidence 356665 6899999999999999999999999999998 7777 67 899886531 112578889988
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
.+++. ++.+|+.+.. ... |.+|+|++.++++++..-+....+|++||
T Consensus 190 ~~~~~-~v~~ni~~~~----~~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 190 GLDPD-EVLKHIYVAR----AFN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp TCCHH-HHGGGEEEEE----CCS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CCCHH-HHhhCEEEEe----cCC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 77664 7777765421 011 34566666666666631000001699999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEE
Q 018638 257 YDEPTAGLDPIA------------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVW 323 (352)
Q Consensus 257 LDEPtsgLD~~~------------~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~ 323 (352)
+||||+++|+.. ...++..|+++.++ + +|||+++|....+...++...+...|++++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~----------~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD----------IAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT----------CEEEEEEECC---------------CCCCC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC----------cEEEEEcccccccccccCCccccCCcceEe
Confidence 999999999852 35566666676654 4 699999999876654444556667777766
Q ss_pred eec
Q 018638 324 QGM 326 (352)
Q Consensus 324 ~g~ 326 (352)
.+.
T Consensus 307 ~~~ 309 (349)
T 1pzn_A 307 HSA 309 (349)
T ss_dssp TTC
T ss_pred ecC
Confidence 654
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.80 E-value=7.4e-23 Score=183.64 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=105.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~ 196 (352)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... .. .+.++||++|+. ... +++++. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~---~~-~~~~ig~~~~~~--~g~---~~~l~~----~- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV---RQ-GGRRIGFDVVTL--SGT---RGPLSR----V- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE---ET-TSSEEEEEEEET--TSC---EEEEEE----C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh---Hh-hhceEEEEEEec--ccc---eehhhc----c-
Confidence 78999999999999999999999999 999 99999876322 11 234799999986 111 122210 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH-HHHH---HHhccCCCCCCCCcEEEEeC--CCCCCCHHHHH
Q 018638 197 KMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR---SIIFDNTKESVEPEVLLYDE--PTAGLDPIAST 270 (352)
Q Consensus 197 ~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv-aIAr---AL~~~~~~~a~~p~llLLDE--PtsgLD~~~~~ 270 (352)
..... ...-.+...++...+|+|||+++ ++++ |++. +|++||+|| |+..+|+...+
T Consensus 65 ~~~~~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~-------~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 65 GLEPP-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGP-------GQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp CCCCC-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSS-------CCCCEEECCCSTTTTTCSHHHH
T ss_pred cccCC-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhcc-------CCCEEEEeCCCccccccHHHHH
Confidence 00000 00012244556678999999988 4454 4654 699999999 89999997655
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEE----EEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 271 VVEDLIRSVHKKGENGLANPGNIASYV----VVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 271 ~l~~ll~~l~~~g~~~~~~~~~~~tvI----ivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
.+.+++. +. .++| .|+|+.+ ..++|||..+.+|+|+...
T Consensus 127 ~l~~~l~----~~----------~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AVRQTLS----TP----------GTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHHHH----CS----------SCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred HHHHHHh----CC----------CcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 5555543 32 1444 3449874 2345666667889987754
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.6e-21 Score=194.89 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=100.1
Q ss_pred ceEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceE
Q 018638 90 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRI 169 (352)
Q Consensus 90 ~~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~i 169 (352)
.+|+++||+++|+++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+.. ........+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~---~~t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI---KKTVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC--------CCEEEEE
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC---ccceeeeeE
Confidence 4699999999999989999999998 99999999999999999999986665 23322111 001112258
Q ss_pred EEEecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCC
Q 018638 170 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKES 249 (352)
Q Consensus 170 g~v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a 249 (352)
++++|+..+++.+||+||+.++.... .....+.+.+.++ ..++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~------ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMP------ 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCC------
T ss_pred EEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhcc------
Confidence 99999988888899999998764311 1111111222221 1355677889999999986
Q ss_pred CCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 250 VEPE---VLLYDEPT-AGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 250 ~~p~---llLLDEPt-sgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|+ +|++|||| .+||+... ++++++.. + .++|+|.|..+.
T Consensus 136 -d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~----------v~iIlVinK~Dl 179 (418)
T 2qag_C 136 -DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-K----------VNIIPLIAKADT 179 (418)
T ss_dssp -CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-T----------SEEEEEEESTTS
T ss_pred -CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-c----------CcEEEEEEcccC
Confidence 599 99999999 69998763 44555543 3 467777776553
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.76 E-value=2.2e-23 Score=203.84 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=120.3
Q ss_pred eeEeeeEEEeC--CcEEEEEcCCCchHHHHHHHHHcCCCCCc----eEEEEC----CEeCCCCCChhhhccceEEEEecC
Q 018638 106 ILRGVSFKIRH--GEAVGIIGPSGTGKSTILKIIAGLLAPDK----GEVYIR----GRKRAGLISDEEISGLRIGLVFQS 175 (352)
Q Consensus 106 ~L~~vsl~i~~--Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~----G~I~i~----G~~~~~~~~~~~~~~~~ig~v~Q~ 175 (352)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|+++ |.+. .. ..... .+|++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~-~~~~~--~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AM-QYSDY--PQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SS-CTTTH--HHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cC-ChhHH--HHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 888764 3222 11 11111 135555555
Q ss_pred CCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEE
Q 018638 176 AALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL 255 (352)
Q Consensus 176 ~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ll 255 (352)
+.++. .|+.+||.+.. . +..++.+..+|+|++||..+++++.. .+|+++
T Consensus 233 ~~~~~-~t~~~nl~~~~-----~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~ll 281 (365)
T 1lw7_A 233 YIDYA-VRHSHKIAFID-----T-------------------DFITTQAFCIQYEGKAHPFLDSMIKE------YPFDVT 281 (365)
T ss_dssp HHHHH-HHHCSSEEEES-----S-------------------CHHHHHHHHHHHHSCCCHHHHHHHHH------SCCSEE
T ss_pred HHHHH-HhccCCEEEEe-----C-------------------CchHHHHHHHHHcCCCCHHHHHHHhh------cCCCEE
Confidence 44332 34455543311 0 11111223456777888888888753 269999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 256 LYDE---PT------AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 256 LLDE---Pt------sgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
|||| |+ .++|+..+..+.+.|.++.++ + .+||+++|. ....++++++.++++ ++..+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~----------~~ililde~-~~~~r~~~~i~~i~~--~l~~~ 348 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK----------VPYIEIESP-SYLDRYNQVKAVIEK--VLNEE 348 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGG----------CCCEEEECS-SHHHHHHHHHHHHHH--HTSCC
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcC----------CCEEEeCCC-CHHHHHHHHHHHHHH--Hhccc
Confidence 9999 65 589999999999999998653 4 589999975 566778888877765 55566
Q ss_pred cccccccC
Q 018638 326 MTHEFTSS 333 (352)
Q Consensus 326 ~~~~~~~~ 333 (352)
+++++...
T Consensus 349 ~~~~~~~~ 356 (365)
T 1lw7_A 349 EISELQNT 356 (365)
T ss_dssp CCSSCCC-
T ss_pred chhHhhcC
Confidence 67776543
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.76 E-value=2.4e-18 Score=161.64 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=106.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
.+++|++++|+||||||||||++.+++.+. .|+++ .|.+.. ...++.|+..+... ..+.+.+.. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~--------~~~~v~~~~~e~~~---~~~~~r~~~-~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL--------PTGPVIYLPAEDPP---TAIHHRLHA-L 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC--------CCCCEEEEESSSCH---HHHHHHHHH-H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC--------CCccEEEEECCCCH---HHHHHHHHH-H
Confidence 378999999999999999999999998664 57663 354321 01247787654321 012222211 1
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC--CCCHHHH-
Q 018638 193 YENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA--GLDPIAS- 269 (352)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts--gLD~~~~- 269 (352)
...... ....++++.+++.+..++.+..||+||+|++ ++++. +|++||+||||+ ++|+...
T Consensus 91 --g~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~-------~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 91 --GAHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAE-------GRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp --HTTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHT-------TCSEEEEECGGGGCCSCTTCHH
T ss_pred --HhhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcC-------CCCEEEECCHHHhcCCCcCchH
Confidence 111222 2245678888888888889999999998865 67775 599999999999 9997544
Q ss_pred --HHHHHHHHHHHH-cCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 270 --TVVEDLIRSVHK-KGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 270 --~~l~~ll~~l~~-~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
..+++.|+++.+ .| +|||+++|+.....
T Consensus 155 ~~~~~~~~L~~l~~~~g----------~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTG----------CSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHHHHHHC----------CEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHHHcC----------CEEEEEecCCCccc
Confidence 788888888864 45 69999999987654
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.76 E-value=6.3e-20 Score=179.72 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=95.1
Q ss_pred eeeEeeeE-------EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCC
Q 018638 105 HILRGVSF-------KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 105 ~~L~~vsl-------~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
..|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+ +..... .....++++|..
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~-----~~~~~~~v~q~~ 177 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV-----HESKKCLVNQRE 177 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC-----CCCSSSEEEEEE
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh-----hhccccceeeee
Confidence 45666665 67889999999999999999999999999997 56665433 322111 111245666654
Q ss_pred CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 177 ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 177 ~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
......+..+ +||+||.+ +|++||
T Consensus 178 ~~~~~~~~~~-------------------------------------------------~La~aL~~-------~Pdvil 201 (356)
T 3jvv_A 178 VHRDTLGFSE-------------------------------------------------ALRSALRE-------DPDIIL 201 (356)
T ss_dssp BTTTBSCHHH-------------------------------------------------HHHHHTTS-------CCSEEE
T ss_pred eccccCCHHH-------------------------------------------------HHHHHhhh-------CcCEEe
Confidence 3222222211 99999996 699999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCC
Q 018638 257 YDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEG 319 (352)
Q Consensus 257 LDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G 319 (352)
+|||| |++. .+.+.++...| .+||+++|+.+.+ .++||++.|..|
T Consensus 202 lDEp~---d~e~----~~~~~~~~~~G----------~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 202 VGEMR---DLET----IRLALTAAETG----------HLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp ESCCC---SHHH----HHHHHHHHHTT----------CEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred cCCCC---CHHH----HHHHHHHHhcC----------CEEEEEEccChHH-HHHHHHhhhcCc
Confidence 99999 6555 34444455666 5899999999988 678999888543
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.9e-20 Score=187.19 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=116.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ 168 (352)
.|++++ +++|++.+ |++|||+|++|++ ++|+||||||||||+|+|+|+. ++|.++....... ....
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~--~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV--QLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC--EEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc--eEee
Confidence 477778 89999887 9999999999999 9999999999999999999984 3444432211111 1236
Q ss_pred EEEEecCCCCCCCCCHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHc-CCCc----ccccCC-----------CCCC
Q 018638 169 IGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAV-GLKG----VEDRLP-----------SELS 228 (352)
Q Consensus 169 ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~l~~~-gL~~----~~~~~~-----------~~LS 228 (352)
++|++|++.+++.+||.||+.|+........ .+.+.+.+.+++... ++.. ..+.++ ..|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 9999999998888999999977542100000 012233445555554 4431 122221 2566
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCCceEEEEEcCC
Q 018638 229 GGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS-VHKKGENGLANPGNIASYVVVTHQ 302 (352)
Q Consensus 229 GGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~-l~~~g~~~~~~~~~~~tvIivTHd 302 (352)
-.+ +.|+++|.. ++++|++|||+..|.+.....+.+.+++ |...| .+|+.++.|
T Consensus 164 ~~D---ieilk~L~~-------~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~g----------i~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDS-------KVNIIPIIAKADAISKSELTKFKIKITSELVSNG----------VQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCS-------CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTB----------CCCCCCC--
T ss_pred HHH---HHHHHHHhh-------CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcC----------CcEEecCCC
Confidence 555 789999974 6999999999999999999899888886 76665 578888865
No 116
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.72 E-value=8.1e-22 Score=191.58 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=123.7
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChh--hhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~--~~~~~~ 168 (352)
+|+++|+++.|+.+.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++....... ...+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 478889999998788999999999999999999999999999999999999999999999998864321100 011235
Q ss_pred EEEEecCCCCCCCCC------------HHHHHHh-----------------------------hhhhcCCCCHHHH---H
Q 018638 169 IGLVFQSAALFDSLT------------VRENVGF-----------------------------LLYENSKMRDEQI---S 204 (352)
Q Consensus 169 ig~v~Q~~~l~~~lT------------V~eni~~-----------------------------~~~~~~~~~~~~~---~ 204 (352)
++|++|++.+|...+ +.|.+.. .+.........+. .
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 899999988775321 2332211 0000000000110 0
Q ss_pred HHHHHHHHHcCCCccccc-CCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 018638 205 ELVKENLAAVGLKGVEDR-LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHK 281 (352)
Q Consensus 205 ~~v~~~l~~~gL~~~~~~-~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~ 281 (352)
+.+.+....+.+ ...|. ...++|+|++|++..|++++.... ....|++++ ||++|.....++++.|.++..
T Consensus 189 ~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~-~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 189 KGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPS-ATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSB-TTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccc-cCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 111122222222 33342 235689999999999999885100 000378776 999999999999999988754
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=2.4e-17 Score=145.92 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=70.6
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEE
Q 018638 220 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVV 299 (352)
Q Consensus 220 ~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIiv 299 (352)
..+.+..||||||||++|||+|+..+ ..+|+++||||||++||+.++..+.++|+++.++ .++|+|
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~---~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-----------~~~ivi 123 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQK---FKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-----------SQFIVI 123 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHH---HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-----------SEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcc---cCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-----------CEEEEE
Confidence 45667899999999999999997410 0136999999999999999999999999998654 389999
Q ss_pred cCCHHHHHhhcCEEEEE--eCCe
Q 018638 300 THQHSTIRRAVDRLIFL--YEGK 320 (352)
Q Consensus 300 THdl~~i~~~aDrv~vL--~~G~ 320 (352)
||+.... .+||+++.+ .+|.
T Consensus 124 th~~~~~-~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 124 TLRDVMM-ANADKIIGVSMRDGV 145 (173)
T ss_dssp CSCHHHH-TTCSEEEEEEEETTE
T ss_pred EecHHHH-HhCCEEEEEEecCCE
Confidence 9998764 679999865 4664
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.71 E-value=4.9e-21 Score=168.67 Aligned_cols=141 Identities=17% Similarity=0.106 Sum_probs=93.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
.+++|++++|+||||||||||+++|+|+ |+.|.|.++|.++.... ..+..++|++|+.. +.++|.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~----~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI----KHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC----CSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh----hcccccCCccchhh--hhHHHHHHHHHHH
Confidence 5789999999999999999999999998 78999999987542111 01123577777644 3468899987643
Q ss_pred hhc--CCCCHHHHHHHHHHHHHHcCCCccc--ccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 193 YEN--SKMRDEQISELVKENLAAVGLKGVE--DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 193 ~~~--~~~~~~~~~~~v~~~l~~~gL~~~~--~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
... .+... .++.++..+++..+. +..+..+|+|++||+++||++.. +|+++ +|+..
T Consensus 77 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r-------~~~~l--------ld~~~ 136 (191)
T 1zp6_A 77 GRYAKEGYFV-----ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR-------GGDSL--------SDPLV 136 (191)
T ss_dssp HHHHHTSCEE-----EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTT-------CTTSC--------CCHHH
T ss_pred HHHhccCCeE-----EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc-------CCCcc--------CCHHH
Confidence 211 00000 001111112232222 44567899999999999999986 47765 68888
Q ss_pred HHHHHHHHHHHHH
Q 018638 269 STVVEDLIRSVHK 281 (352)
Q Consensus 269 ~~~l~~ll~~l~~ 281 (352)
...+.+.+..+..
T Consensus 137 ~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 137 VADLHSQFADLGA 149 (191)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHHhccCc
Confidence 8777777766543
No 119
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.71 E-value=1.8e-20 Score=190.14 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=110.7
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhccceEEEEecCCCCCCCC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+...... ..+..+.+|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998776532100 0111234699999999888888
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC-cEEEEeCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP-EVLLYDEPT 261 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p-~llLLDEPt 261 (352)
+|++|+.++.... .+ .+ +++..|.......++.+| +|++.++|++.. ..| ++||...|+
T Consensus 363 tV~e~l~~a~~~~--~D------vV--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~------~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKARN--ID------VL--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDV------EAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHTT--CS------EE--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCT------TCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhcC--CC------EE--EEeCCCccchhhhHHHHH----HHHHHHHHHhcc------CCCCeeEEEecCc
Confidence 9999998865321 11 00 123333322222222333 488999998753 246 466666688
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHH
Q 018638 262 AGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 262 sgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+|.|.. +.++.+++. + .|.|++|| ++.
T Consensus 423 tGq~al------~~ak~f~~~~~----------itgvIlTK-LD~ 450 (503)
T 2yhs_A 423 TGQNAV------SQAKLFHEAVG----------LTGITLTK-LDG 450 (503)
T ss_dssp GTHHHH------HHHHHHHHHTC----------CSEEEEEC-GGG
T ss_pred ccHHHH------HHHHHHHhhcC----------CCEEEEEc-CCC
Confidence 886554 334555543 3 58899999 444
No 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.71 E-value=7.8e-21 Score=167.76 Aligned_cols=172 Identities=14% Similarity=0.054 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENS 196 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~ 196 (352)
|++++|+||||||||||+++|++ |.+|.|+++|.++.. ...+++++|....++..++++|+.+....+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH--------MVVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT--------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh--------hhccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 678999999865421 1135677776544445678888866432110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccCCCCC--ChHHHHHHHHHH------HHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 197 KMRDEQISELVKENLAAVGLKGVEDRLPSEL--SGGMKKRVALAR------SIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 197 ~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L--SGGqrQRvaIAr------AL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
.... ..+++.+. .....+...++ |+||+|++.++. +++. +|+...+|+ +||+..
T Consensus 71 ~~~~-------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~-------R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 LAQN-------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR-------RDALRKKDE---QMGERC 132 (189)
T ss_dssp HTTC-------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHH-------HTTTSCC-------CGGG
T ss_pred hcCC-------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHH-------HHHhccccc---cCCHHH
Confidence 0000 00011110 00000111234 889988888887 7876 477777784 899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC-HHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 269 STVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ-HSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 269 ~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd-l~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
... ++.+..+.+.+ .++|.+||. ++.+.++||+|+ ++|+++.+|+++-+
T Consensus 133 ~~~-~~~~~~~~~~~----------~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDE----------RYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCT----------TSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCc----------cEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 877 78887775443 489999999 999999999998 99999999977554
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.70 E-value=1.9e-20 Score=172.75 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH---cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+.. .. . ...+++++|+..+++..++.+++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~---~~--~-~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS---TE--V-GEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT---CH--H-HHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC---Ch--H-HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 999999999998875421 11 1 123567788888888889999997754
Q ss_pred hh-------cCCCCHHHHHHHHHHHH--HHcC------------CCcccccCCCCCChHHHHHHHHHHHH-hccCCCCCC
Q 018638 193 YE-------NSKMRDEQISELVKENL--AAVG------------LKGVEDRLPSELSGGMKKRVALARSI-IFDNTKESV 250 (352)
Q Consensus 193 ~~-------~~~~~~~~~~~~v~~~l--~~~g------------L~~~~~~~~~~LSGGqrQRvaIArAL-~~~~~~~a~ 250 (352)
.. ..+..... ..+..+. ..++ +....++++.+||| |+ +|+ +.
T Consensus 100 ~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~------- 163 (246)
T 2bbw_A 100 ENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN------- 163 (246)
T ss_dssp HTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS-------
T ss_pred HhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC-------
Confidence 21 11111111 1122222 1233 33445778899999 66 677 54
Q ss_pred CCcEEEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 018638 251 EPEVLLYD----EPTAGLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 251 ~p~llLLD----EPtsgLD~~~~~~l~~ll~~l~~~g 283 (352)
+|++++|| |||++||+.++..+.+.|+++.+++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 79999999 9999999999999999999987653
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.70 E-value=2e-17 Score=147.98 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred eeeEeeeE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSF-KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl-~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++ .+..+ +...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~----------------------~~~~~-~~~~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVD----------------------TEGGF-SPER 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEE----------------------SSCCC-CHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEE----------------------CCCCC-CHHH
Confidence 34566654 689999999999999999999999999 3222333332 22111 1001
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH--HHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM--KKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq--rQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+.+.. ...+...+ ++++.+ .+.++|+++ +|+++.+++++.+ +|+++|+||||
T Consensus 62 ~~~~~-----~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~------~~~lliiD~~~ 115 (220)
T 2cvh_A 62 LVQMA-----ETRGLNPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDS------NFALVVVDSIT 115 (220)
T ss_dssp HHHHH-----HTTTCCHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCT------TEEEEEEECCC
T ss_pred HHHHH-----HhcCCChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhc------CCCEEEEcCcH
Confidence 11111 01112211 122222 223445554 5688888899851 49999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHH-------------HHHhhcCEEEEEeCC
Q 018638 262 AGLDPIA--------STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHS-------------TIRRAVDRLIFLYEG 319 (352)
Q Consensus 262 sgLD~~~--------~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~-------------~i~~~aDrv~vL~~G 319 (352)
+.+|+.. ...+.+.|+++.++ + .|||+++|... .+..+||+|++|+..
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~----------~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHN----------IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT----------CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999743 24455667777654 5 58999999876 577899999999864
No 123
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.69 E-value=3.5e-20 Score=161.74 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=76.6
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
++.+|+++.|+++.++++|||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.. .... + + +
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~---~~~~-~-~--~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE---EYNI-A-G--K 79 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE---EEEE-T-T--E
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee---eccC-C-C--c
Confidence 34456788888888999999999999999999999999999999999999 999999999976531 1111 1 2 7
Q ss_pred EecCCCCCCCCCHHHHHHh-hh
Q 018638 172 VFQSAALFDSLTVRENVGF-LL 192 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~-~~ 192 (352)
+||++.+| .+||.||+.+ ++
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g~ 100 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMGI 100 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHSTH
T ss_pred ceeccccc-cCCcHHHHHHcCh
Confidence 99999888 7999999954 44
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.69 E-value=2.4e-18 Score=166.70 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=117.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhh----hccceEEEEecCCCCCCCCCHHHHH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEE----ISGLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~----~~~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++........ ..+..+.|++|...++|.++|++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 347899999999999999999999999999999999999998754321111 1223477999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA 268 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~ 268 (352)
.++...... . -+++..|+.+.....+.+|| .++|++.. ++.+++||.++.
T Consensus 205 ~~~~~~~~d--~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~-------de~llvLDa~t~------ 254 (328)
T 3e70_C 205 QHAKARGID--V--------VLIDTAGRSETNRNLMDEMK-------KIARVTKP-------NLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHTCS--E--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCC-------SEEEEEEEGGGT------
T ss_pred HHHHhccch--h--------hHHhhccchhHHHHHHHHHH-------HHHHHhcC-------CCCEEEEecHHH------
Confidence 876432110 0 01333454444444444554 38899974 578888996554
Q ss_pred HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH---------HHHHhhcCEEEEEeCCeEE
Q 018638 269 STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH---------STIRRAVDRLIFLYEGKIV 322 (352)
Q Consensus 269 ~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl---------~~i~~~aDrv~vL~~G~iv 322 (352)
..+.+.++.+.+. + .|+|++||.- +.+....-.|.++..|+-+
T Consensus 255 -~~~~~~~~~~~~~~~----------it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 -NAIVEQARQFNEAVK----------IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -THHHHHHHHHHHHSC----------CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHHHHHHHhcC----------CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3455666777654 4 5899999943 2344555678888888654
No 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.69 E-value=6.8e-19 Score=161.21 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=96.5
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH----
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV---- 184 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV---- 184 (352)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... . .+.+++|+||++.+|+.+++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~--e~~gi~y~fq~~~~f~~~~~~~~f 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----G--EVHGEHYFFVNHDEFKEMISRDAF 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----T--CCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----c--cccCceEEECCHHHHHHHHhcCHH
Confidence 346789999999999999999999999999986 68999988765321 1 12258999998776665555
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
.||+.+... +.|-.+++ +..++- .++++||| |
T Consensus 84 ~E~~~~~~~---------------------------------~yg~~~~~--v~~~l~--------~G~illLD-----L 115 (219)
T 1s96_A 84 LEHAEVFGN---------------------------------YYGTSREA--IEQVLA--------TGVDVFLD-----I 115 (219)
T ss_dssp EEEEEETTE---------------------------------EEEEEHHH--HHHHHT--------TTCEEEEE-----C
T ss_pred HHHHHHHhc---------------------------------cCCCCHHH--HHHHHh--------cCCeEEEE-----E
Confidence 333322100 00000111 223332 37999999 9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCeEEEeeccccc
Q 018638 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 330 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~iv~~g~~~~~ 330 (352)
|+..+..+.+.+. ++ .||+++||+++.+.+ |+ +.+| .++++++
T Consensus 116 D~~~~~~i~~~l~----~~----------~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 116 DWQGAQQIRQKMP----HA----------RSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp CHHHHHHHHHHCT----TC----------EEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred CHHHHHHHHHHcc----CC----------EEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 9999999998875 44 699999999998875 43 6677 4555554
No 126
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.69 E-value=5.8e-18 Score=165.80 Aligned_cols=123 Identities=24% Similarity=0.188 Sum_probs=94.3
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCceEEEEC-CEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA-PDKGEVYIR-GRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-p~~G~I~i~-G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
-++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+.... ....++++++|+..+++..+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t------t~~~~i~~v~q~~~l~dtpg 277 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT------TTAARLYHFPHGGDVIDSPG 277 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------------CCCEEEECTTSCEEEECHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc------eEEEEEEEECCCCEecCccc
Confidence 35667765 4799999999999999999999999999 999999987 754321 12336999999999988888
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHh
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSII 242 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~ 242 (352)
|+++ ++ ...+.++..+.+.++++.+|+..+.++.+.+|| ||+||++||++++
T Consensus 278 v~e~---~l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 278 VREF---GL---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHTC---CC---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHh---hh---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8884 22 124566667778889999999999999999999 9999999999886
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.68 E-value=8.8e-19 Score=171.60 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCC
Q 018638 93 DCRNVYKS---FGE--KHIL---------RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL 158 (352)
Q Consensus 93 ~~~nls~~---y~~--~~~L---------~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~ 158 (352)
++++++|+ |+. ..+| +++||+|++|++++|+||||||||||+++|+|+++|++|.|+++|.. ..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 67788877 753 3455 99999999999999999999999999999999999999999999753 11
Q ss_pred CChhhhccceEEEEe-cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHH
Q 018638 159 ISDEEISGLRIGLVF-QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVAL 237 (352)
Q Consensus 159 ~~~~~~~~~~ig~v~-Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaI 237 (352)
.... .+.+++|++ |++.+ .++++..+|..|
T Consensus 215 ~~~~--~~~~v~~v~~q~~~~-----------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPD--HPNHVHLFYPSEAKE-----------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTT--CSSEEEEECC---------------------------------------------------------CCHHHHH
T ss_pred Cccc--cCCEEEEeecCcccc-----------------------------------------------ccccccCHHHHH
Confidence 1111 233689999 65431 012233467778
Q ss_pred HHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 238 ARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 238 ArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+.++.. +|+.+++||+.. .++.+.|+.+.. |. .|++.++|..+ +...+||++.|.
T Consensus 246 ~~~l~~-------~pd~~l~~e~r~-------~~~~~~l~~l~~-g~---------~~~l~t~H~~~-~~~~~~Rl~~l~ 300 (361)
T 2gza_A 246 RSCLRM-------KPTRILLAELRG-------GEAYDFINVAAS-GH---------GGSITSCHAGS-CELTFERLALMV 300 (361)
T ss_dssp HHHTTS-------CCSEEEESCCCS-------THHHHHHHHHHT-TC---------CSCEEEEECSS-HHHHHHHHHHHH
T ss_pred HHHHhc-------CCCEEEEcCchH-------HHHHHHHHHHhc-CC---------CeEEEEECCCC-HHHHHHHHHHHH
Confidence 888864 699999999986 245566776643 32 37899999966 667789988887
Q ss_pred CCe
Q 018638 318 EGK 320 (352)
Q Consensus 318 ~G~ 320 (352)
.|.
T Consensus 301 ~~~ 303 (361)
T 2gza_A 301 LQN 303 (361)
T ss_dssp TTS
T ss_pred hcc
Confidence 763
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.66 E-value=6.1e-20 Score=176.66 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=107.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC--------CCCceEEEECCEeCCCCCC--------------hhhhccceEEEE---
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL--------APDKGEVYIRGRKRAGLIS--------------DEEISGLRIGLV--- 172 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~--------~p~~G~I~i~G~~~~~~~~--------------~~~~~~~~ig~v--- 172 (352)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|.++..... .... ...++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~-~~~l~~l~~~ 83 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNEL-EDALLDLLDN 83 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCH-HHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHH-HHHHHHHHhH
Confidence 689999999999999999999997 7899999999998754311 0111 1247777
Q ss_pred ecCCCCCCCCCHHHHHHhhhhhc--CCC-CHHHHH--HHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCC
Q 018638 173 FQSAALFDSLTVRENVGFLLYEN--SKM-RDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTK 247 (352)
Q Consensus 173 ~Q~~~l~~~lTV~eni~~~~~~~--~~~-~~~~~~--~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~ 247 (352)
+|++.+++..++.||+.++.... ... ...... ..+..++..+++..+.++.+ +||+||+||+..+++++.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~---- 158 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLT---- 158 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEE----
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEE----
Confidence 68877666778888876531000 000 000000 01112233445555544444 799999999998888886
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 248 ESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 248 ~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
+|+++ ||| ..+.+.|++++ .+ .+|+++||+...+..+
T Consensus 159 ---k~dl~--de~---------~~l~~~l~~l~-~~----------~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 159 ---KTDVA--GEA---------EKLHERLARIN-AR----------APVYTVTHGDIDLGLL 195 (318)
T ss_dssp ---CTTTC--SCT---------HHHHHHHHHHC-SS----------SCEEECCSSCCCGGGG
T ss_pred ---CcccC--CHH---------HHHHHHHHHhC-CC----------CeEEEecccCCCHHHH
Confidence 58877 998 67788888774 33 5899999965444433
No 129
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.65 E-value=2e-18 Score=165.03 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=88.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCCCC-----CCCCH
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALF-----DSLTV 184 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~-----~~lTV 184 (352)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++..... ......++|||+|+|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 45579999999999999999999999 99999999999 898764321 111112489999998653 67899
Q ss_pred HHHH--Hhh----h--hhcCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCChHHHHHHHHHH
Q 018638 185 RENV--GFL----L--YENSKMRDEQISELVKENLAAVGLKG-VEDRLPSELSGGMKKRVALAR 239 (352)
Q Consensus 185 ~eni--~~~----~--~~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSGGqrQRvaIAr 239 (352)
||+ .|+ + .........+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 454 1 11111122233456889999999986 889999999999999999987
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.64 E-value=2.1e-16 Score=143.37 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc--CCCC-----CceEEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG--LLAP-----DKGEVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p-----~~G~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lT 183 (352)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++++.. ...... ..++++.+|+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---~~~~~~~~~~~~g~~~~~-------- 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---RPERLLAVAERYGLSGSD-------- 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHHH--------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---CHHHHHHHHHHcCCCHHH--------
Confidence 489999999999999999999999999 6666 5677777765411 111100 0112222211
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHH-HHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKK-RVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQ-RvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
+.+|+.+ ...++..+.. .+.-++.++.. .+|+++++|||++
T Consensus 89 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~lliiD~~~~ 130 (243)
T 1n0w_A 89 VLDNVAY---------------------------------ARAFNTDHQTQLLYQASAMMVE-----SRYALLIVDSATA 130 (243)
T ss_dssp HHHTEEE---------------------------------EECCSHHHHHHHHHHHHHHHHH-----SCEEEEEEETSSG
T ss_pred HhhCeEE---------------------------------EecCCHHHHHHHHHHHHHHHhc-----CCceEEEEeCchH
Confidence 1222111 1112333322 12223333321 2699999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHh-------------------hc
Q 018638 263 GLDPI-------A-----STVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRR-------------------AV 310 (352)
Q Consensus 263 gLD~~-------~-----~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~-------------------~a 310 (352)
.+|+. . ...++..|.++.++ | +|||+++|....... +|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~----------~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 200 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFG----------VAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAS 200 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEC-------------------------CCTT
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEeeeeecCCCccccCCCcccCCccChhhhcC
Confidence 99985 3 33455556666544 5 699999997765443 79
Q ss_pred CEEEEEeCC
Q 018638 311 DRLIFLYEG 319 (352)
Q Consensus 311 Drv~vL~~G 319 (352)
|++++|+.|
T Consensus 201 d~vi~l~~~ 209 (243)
T 1n0w_A 201 TTRLYLRKG 209 (243)
T ss_dssp CEEEEEEEC
T ss_pred cEEEEEEEc
Confidence 999999875
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.64 E-value=1.6e-17 Score=163.48 Aligned_cols=129 Identities=18% Similarity=0.245 Sum_probs=93.6
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-ceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPD-KGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~-~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV 184 (352)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + ..+.+++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~-----~~~~~~~~v~Q~~-------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y-----VFKHKKSIVNQRE-------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S-----CCCCSSSEEEEEE--------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h-----hhccCceEEEeee--------
Confidence 566665 7899999999999999999999999999998 899987765432 1 1123578888841
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
+|++ +..| +.+|+++|.. +|++|++|||+
T Consensus 191 -----------------------------~g~~------~~~~------~~~l~~~L~~-------~pd~illdE~~--- 219 (372)
T 2ewv_A 191 -----------------------------VGED------TKSF------ADALRAALRE-------DPDVIFVGEMR--- 219 (372)
T ss_dssp -----------------------------BTTT------BSCS------HHHHHHHTTS-------CCSEEEESCCC---
T ss_pred -----------------------------cCCC------HHHH------HHHHHHHhhh-------CcCEEEECCCC---
Confidence 2221 2233 4699999986 69999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 265 DPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|++.. ..+++.. ..| .+|++++|+.+ +..++||++.|
T Consensus 220 d~e~~---~~~l~~~-~~g----------~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 220 DLETV---ETALRAA-ETG----------HLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp SHHHH---HHHHHHH-TTT----------CEEEECCCCCS-HHHHHHHHHHT
T ss_pred CHHHH---HHHHHHH-hcC----------CEEEEEECcch-HHHHHHHHHHh
Confidence 77653 3344433 345 48999999966 66667776443
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.59 E-value=3.5e-15 Score=146.17 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=67.2
Q ss_pred cCCCCCChHHHHHH------HHHHHHhccCCCCCCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 018638 222 RLPSELSGGMKKRV------ALARSIIFDNTKESVE-PEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIA 294 (352)
Q Consensus 222 ~~~~~LSGGqrQRv------aIArAL~~~~~~~a~~-p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~ 294 (352)
+++..||||||||+ ++|++|+. + |++|||||||++||+..+..+.+.|.++.+. .
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~-------~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-----------~ 337 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIG-------NRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-----------P 337 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS-------SCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC-----------S
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhc-------CCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC-----------C
Confidence 56689999999988 56788885 7 9999999999999999999999999887432 3
Q ss_pred EEEEEcCCHHHHHhhcCEEEEEe
Q 018638 295 SYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 295 tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
+||+|||+++ +..+||++++|+
T Consensus 338 ~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 338 QMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp EEEEEESCGG-GGGGCSEEEEEE
T ss_pred eEEEEEChHH-HHhhCCEEEEEE
Confidence 8999999987 578899999997
No 133
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.58 E-value=6e-18 Score=149.45 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=83.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCEeCCCCC---ChhhhccceEE----EEecCCCCCCCCCHHHH
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGRKRAGLI---SDEEISGLRIG----LVFQSAALFDSLTVREN 187 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~~~~~~~---~~~~~~~~~ig----~v~Q~~~l~~~lTV~en 187 (352)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.... ...+ +..++| +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~-r~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSW-KIYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHH-HHHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHH-HHHhcCCceEEECCCcEEEE----ec-
Confidence 589999999999999999999999998 899999998754432 1222 112355 8888876651 00
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHH-c-CCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEE-------EEe
Q 018638 188 VGFLLYENSKMRDEQISELVKENLAA-V-GLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVL-------LYD 258 (352)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~v~~~l~~-~-gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ll-------LLD 258 (352)
...+ ....+.++++. + |++...- ..|||||+||++||||++.+ |++. +-|
T Consensus 77 ----------~~~~-~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~-------p~i~~~~~~a~~~~ 135 (171)
T 2f1r_A 77 ----------VSEE-EGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEV-------EHFRQGRILAVVCD 135 (171)
T ss_dssp ----------CCHH-HHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGG-------GGGCSSCEEEEECS
T ss_pred ----------CChh-hhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCC-------CccCccceEEEEec
Confidence 0111 01123344443 3 4443322 24999999999999999985 5542 335
Q ss_pred CCCC---CCCHHHHHHHHHHHHHHHHcC
Q 018638 259 EPTA---GLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 259 EPts---gLD~~~~~~l~~ll~~l~~~g 283 (352)
.|.. -+|......+.+.|.+..++|
T Consensus 136 ~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 136 ERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 5532 234445667777776665554
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.58 E-value=7.3e-19 Score=175.57 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh--hhhccce
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD--EEISGLR 168 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~--~~~~~~~ 168 (352)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++...... ......+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46677888888777788888 54 89999999999999999999999999999999999988765321110 0001123
Q ss_pred EEEEe---------cCCCC--CCC----CCHHHHHHhhhhhcC---CCCHHHHHHHHHHHHHHcCCCcccccCCCCCChH
Q 018638 169 IGLVF---------QSAAL--FDS----LTVRENVGFLLYENS---KMRDEQISELVKENLAAVGLKGVEDRLPSELSGG 230 (352)
Q Consensus 169 ig~v~---------Q~~~l--~~~----lTV~eni~~~~~~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGG 230 (352)
+++.| |+|.+ +.. .|+.+++.+....+. ........+ +.+.|..+|+.... .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHH
Confidence 55655 98865 333 589999987542110 000001112 22356778887653 78899999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcEEE
Q 018638 231 MKKRVALARSIIFDNTKESVEPEVLL 256 (352)
Q Consensus 231 qrQRvaIArAL~~~~~~~a~~p~llL 256 (352)
|+|| |||+|+. +|++..
T Consensus 298 ~~QR--LaraL~~-------~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCP-------DCKEPY 314 (418)
T ss_dssp EEEE--EEEEECT-------TTCEEE
T ss_pred HHHH--hhhhhcC-------CCCccC
Confidence 9999 9999986 599865
No 135
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.58 E-value=2.3e-17 Score=157.48 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=77.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCC-----------
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAA----------- 177 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~----------- 177 (352)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.... ......++|||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 456679999999999999999999999999999999999 898765432 1111125899999985
Q ss_pred -----CCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-cccccCCCCCCh
Q 018638 178 -----LFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK-GVEDRLPSELSG 229 (352)
Q Consensus 178 -----l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSG 229 (352)
+||.+|+ +|+.|+...+ ..+...++.++|+.+||. +..+++|.+||.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9998853211 122235688999999995 788999999985
No 136
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.54 E-value=7.8e-16 Score=134.70 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=76.4
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
+|++++|+.++|+||||||||||+++|++.+.|++|.. +.| .++.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------------~~~----------~~~~~~~~~ 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------------GYF----------FDTKDLIFR 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------------CCE----------EEHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------------EEE----------EEHHHHHHH
Confidence 46678899999999999999999999999887665521 111 123332221
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC-CCCHHHH
Q 018638 191 LLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIAS 269 (352)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts-gLD~~~~ 269 (352)
. ......-.. + .+...+. +|++|+||||++ ++|+..+
T Consensus 82 ~----------------~~~~~~~~~----------------~--~~~~~~~--------~~~llilDE~~~~~~~~~~~ 119 (180)
T 3ec2_A 82 L----------------KHLMDEGKD----------------T--KFLKTVL--------NSPVLVLDDLGSERLSDWQR 119 (180)
T ss_dssp H----------------HHHHHHTCC----------------S--HHHHHHH--------TCSEEEEETCSSSCCCHHHH
T ss_pred H----------------HHHhcCchH----------------H--HHHHHhc--------CCCEEEEeCCCCCcCCHHHH
Confidence 1 111110000 0 1122232 499999999996 9999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH
Q 018638 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS 304 (352)
Q Consensus 270 ~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~ 304 (352)
..+.+++.+..+++ .++|++||...
T Consensus 120 ~~l~~ll~~~~~~~----------~~ii~tsn~~~ 144 (180)
T 3ec2_A 120 ELISYIITYRYNNL----------KSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHHTT----------CEEEEECCCCS
T ss_pred HHHHHHHHHHHHcC----------CCEEEEcCCCh
Confidence 99999999987766 58999999764
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.54 E-value=2.1e-15 Score=149.84 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=92.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHH--HHHcCCCCCce-----EEEECCEeCCCCCChhhhc--cceEEEEecCCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILK--IIAGLLAPDKG-----EVYIRGRKRAGLISDEEIS--GLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk--~l~Gl~~p~~G-----~I~i~G~~~~~~~~~~~~~--~~~ig~v~Q~~~l~~~lT 183 (352)
-|++|++++|+||||||||||++ +++++.+++.| .|+|++++.. ...... ..++|+.+| +
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~---~~~rl~~~a~~~gl~~~--------~ 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF---RPVRLVSIAQRFGLDPD--------D 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---CHHHHHHHHHHTTCCHH--------H
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc---CHHHHHHHHHHcCCChH--------h
Confidence 58999999999999999999999 45677777554 7788776421 111110 112333222 3
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+.+|+.+.. ..... .+.+.+.-++.++.. .+|+++++|||++.
T Consensus 243 vleni~~~~----~~~~~----------------------------~~~~~l~~~~~~l~~-----~~~~llVIDs~t~~ 285 (400)
T 3lda_A 243 ALNNVAYAR----AYNAD----------------------------HQLRLLDAAAQMMSE-----SRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHTEEEEE----CCSHH----------------------------HHHHHHHHHHHHHHH-----SCEEEEEEETGGGG
T ss_pred HhhcEEEec----cCChH----------------------------HHHHHHHHHHHHHHh-----cCCceEEecchhhh
Confidence 344432211 01111 112223333333321 36999999999999
Q ss_pred CCHHHH------------HHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCH-------------------HHHHhhcC
Q 018638 264 LDPIAS------------TVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQH-------------------STIRRAVD 311 (352)
Q Consensus 264 LD~~~~------------~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl-------------------~~i~~~aD 311 (352)
+|+... ..+++.|++++++ + +|||+|+|.. ..+..++|
T Consensus 286 ~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g----------itVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad 355 (400)
T 3lda_A 286 YRTDFSGRGELSARQMHLAKFMRALQRLADQFG----------VAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSST 355 (400)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHHHHHHHC----------CEEEEEEEC--------------------CHHHHHCS
T ss_pred CchhhcCccchHHHHHHHHHHHHHHHHHHHHcC----------CEEEEEEeecccCCccccccCCCccCCchhHHHHhcc
Confidence 997533 5677888888765 5 6999999982 23577899
Q ss_pred EEEEEeCCe
Q 018638 312 RLIFLYEGK 320 (352)
Q Consensus 312 rv~vL~~G~ 320 (352)
.+++|++++
T Consensus 356 ~vl~L~~~~ 364 (400)
T 3lda_A 356 TRLGFKKGK 364 (400)
T ss_dssp EEEEEEECS
T ss_pred eEEEEEecC
Confidence 999998764
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.53 E-value=1.2e-17 Score=170.82 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=109.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|+++|.+-.... ....++++.|........|
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-----~~~~v~~~~r~~~~~~~~~ 321 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-----HENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-----CSSEEEEECBCCSSSCCBC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-----CCCeEEEEeecccccCCcC
Confidence 35788999999999999999999999999999999999999999999886422111 0123666665533222234
Q ss_pred HHHHHHhhhhhcC------CCCHHHHHHH------------------HHHHHHHcC-----CCc----ccc---cCCCCC
Q 018638 184 VRENVGFLLYENS------KMRDEQISEL------------------VKENLAAVG-----LKG----VED---RLPSEL 227 (352)
Q Consensus 184 V~eni~~~~~~~~------~~~~~~~~~~------------------v~~~l~~~g-----L~~----~~~---~~~~~L 227 (352)
..+++...+.... .....+.... +.++++++. +.. .++ .....+
T Consensus 322 ~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 4444433221100 0111111100 122233322 211 111 223468
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE--EcCCHHH
Q 018638 228 SGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV--VTHQHST 305 (352)
Q Consensus 228 SGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi--vTHdl~~ 305 (352)
|+||+||+++| ++ | |+|||+.....+++.|.++.+++ .|+++ +||++++
T Consensus 402 s~G~~~R~~~a-----------------i~-E-~~GlDp~~~~~~~~~l~~~~~~~----------~tii~~~~sH~l~e 452 (511)
T 2oap_1 402 RGNTRLRRTKE-----------------VN-E-ILGIDPVDKNLLVNQFVKWDPKE----------DKHIEVSMPKKLEK 452 (511)
T ss_dssp SSSCEEEEEEE-----------------EE-E-EEECCSSSSCCEEEEEEEEETTT----------TEEEECSCCTHHHH
T ss_pred eCCCceEEEEE-----------------EE-E-EcCcccCCCeEEEEEeEEEcccC----------CEEEEcccHHHHHH
Confidence 99999886543 11 6 99999988877777777765554 47875 9999999
Q ss_pred HHhhcCE
Q 018638 306 IRRAVDR 312 (352)
Q Consensus 306 i~~~aDr 312 (352)
+...|+.
T Consensus 453 i~~~~g~ 459 (511)
T 2oap_1 453 MADFLGV 459 (511)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 9888753
No 139
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.52 E-value=1.6e-18 Score=167.47 Aligned_cols=178 Identities=16% Similarity=0.242 Sum_probs=119.7
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEEcCCCchHHHHHHHHHcCC----CCCceEEEECCEeCCCCCC
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHG-------EAVGIIGPSGTGKSTILKIIAGLL----APDKGEVYIRGRKRAGLIS 160 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~G-------e~~~IiGpNGsGKSTLlk~l~Gl~----~p~~G~I~i~G~~~~~~~~ 160 (352)
++.+++++.||+..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~-- 96 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI-- 96 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH--
Confidence 55667777888888999999999887 899999999999999999999998 67788777666543210
Q ss_pred hhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCCC----HHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHH
Q 018638 161 DEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMR----DEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVA 236 (352)
Q Consensus 161 ~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~~----~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRva 236 (352)
.....+..|.|++|...+++ ++.|++...+... ... .....+.+...+..+++.. ....+..||+|+|||+.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 00112336999999877765 7888875433221 111 1122233555566677655 67788999999999973
Q ss_pred HHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCE
Q 018638 237 LARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDR 312 (352)
Q Consensus 237 IArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDr 312 (352)
++ .+||+....++.++|++..+.- . ++|+.+.+..++++
T Consensus 173 l~-----------------------~~Ld~~~~~~l~~iL~~~~~~~-----------~---~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 173 II-----------------------LELDFYTVKELKEIIKRAASLM-----------D---VEIEDAAAEMIAKR 211 (334)
T ss_dssp EE-----------------------EECCCCCHHHHHHHHHHHHHHT-----------T---CCBCHHHHHHHHHT
T ss_pred ce-----------------------eeCCCCCHHHHHHHHHHHHHHc-----------C---CCcCHHHHHHHHHh
Confidence 32 5667777888888888876542 1 25777766666654
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=9.9e-15 Score=140.11 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=77.7
Q ss_pred EEEEEcCCCchHHHHHHHHHc-CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAG-LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSK 197 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G-l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~ 197 (352)
.+.|.||||+|||||+++|+| ++.|+.|.|.++|.+... ... ....+++++|...+.-..+ + . ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~--~---~-----~~ 103 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASN-RKLELNVVSSPYHLEITPS--D---M-----GN 103 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------------CCEECSSEEEECCC--------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---ccc-ccceeeeecccceEEecHh--h---c-----CC
Confidence 389999999999999999999 899999999999976432 111 1335889998765421111 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 018638 198 MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIR 277 (352)
Q Consensus 198 ~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~ 277 (352)
.......+.+.++.+..++..+. +||| +.. +|+++|+|||++ ||+..+..+.+.|.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~-------~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD-----SKDG-----------LAH-------RYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccc-----cccc-----------cCC-------CCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 11112233333333333333222 6677 543 699999999999 99999999999888
Q ss_pred HHHHcCCCCCCCCCCceEEEEEcCCHHH
Q 018638 278 SVHKKGENGLANPGNIASYVVVTHQHST 305 (352)
Q Consensus 278 ~l~~~g~~~~~~~~~~~tvIivTHdl~~ 305 (352)
+... + .++|++||+++.
T Consensus 160 ~~~~-~----------~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSK-N----------IRLIMVCDSMSP 176 (354)
T ss_dssp HSTT-T----------EEEEEEESCSCS
T ss_pred hhcC-C----------CEEEEEeCCHHH
Confidence 7533 2 689999999754
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.51 E-value=7.9e-19 Score=157.45 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=88.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC-------------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA-------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDS 181 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~-------------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~ 181 (352)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.... ....+.+ .+.|+..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~-~~~~~~~----~i~~~~~l~~- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFV-TREMMQR----DIAAGDFIEH- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEEC-CHHHHHH----HHHHTCEEEE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEc-cHHHHHH----HHHcCCCEee-
Confidence 5799999999999999999999999886 66665 355443221 1111111 1245544442
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH---HHHH-HHhccCCCCCCCCcEEEE
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALAR-SIIFDNTKESVEPEVLLY 257 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv---aIAr-AL~~~~~~~a~~p~llLL 257 (352)
.++.+|+ ++ .+.++ +.++++.... ...+..+ .|-++.. ..|| +++. +|++++|
T Consensus 74 ~~~~~n~-~g------~~~~~----i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~~~~~~~l~-------~p~~~il 130 (198)
T 1lvg_A 74 AEFSGNL-YG------TSKEA----VRAVQAMNRI-CVLDVDL----QGVRSIKKTDLCPIYIFVQ-------PPSLDVL 130 (198)
T ss_dssp EEETTEE-EE------EEHHH----HHHHHHTTCE-EEEECCH----HHHHHHTTSSCCCEEEEEE-------CSCHHHH
T ss_pred eeecCcc-CC------CCHHH----HHHHHHcCCc-EEEECCH----HHHHHHHhcCCCcEEEEEe-------CCCHHHH
Confidence 3455554 32 12222 3344443111 0111000 1111111 1455 5664 5788889
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeC
Q 018638 258 DEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYE 318 (352)
Q Consensus 258 DEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~ 318 (352)
||+|+++|..+...+.+.|..+.++ +.++| +. ..+|+|+++++
T Consensus 131 de~~~~~d~~~e~~i~~~l~~~~~~--------------~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 131 EQRLRLRNTETEESLAKRLAAARTD--------------MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH--------------TTGGG--ST--TTCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH--------------HHHhh--cc--CCceEEEECCC
Confidence 9999999999999999888887653 23456 22 45799888764
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=3e-15 Score=149.30 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=87.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
-++++|+++.|+.++|+|+|||||||||++|+|..+ .+.+.+...+ ...+|+|+++.. ..+++.|
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-------~p~~G~V~~~~~--~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-------SPNLGVVEVSEE--ERFTLAD 211 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-------CCEEEEEECSSS--CEEEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-------cceeeEEEecCc--ceEEEEe
Confidence 479999999999999999999999999999999843 2333322111 113455554320 0011111
Q ss_pred HHHhh--hhhcCCCCHHHHH--HHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 187 NVGFL--LYENSKMRDEQIS--ELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 187 ni~~~--~~~~~~~~~~~~~--~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
+..+. ............. +++..++..+++. ++++.+||+||+|++++|++|+. +|.+|++ +
T Consensus 212 tpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~-------~P~ILVl----N 277 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLR-------RPSLVAL----N 277 (416)
T ss_dssp CCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHH-------SCEEEEE----E
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhc-------CCEEEEE----E
Confidence 11000 0001111111110 1112233333443 55678899999999999999987 5999999 9
Q ss_pred CCCHHHHHHHHHHHHH-HHHcC
Q 018638 263 GLDPIASTVVEDLIRS-VHKKG 283 (352)
Q Consensus 263 gLD~~~~~~l~~ll~~-l~~~g 283 (352)
.+|+... ...+.+.+ +.+.+
T Consensus 278 KlDl~~~-~~~~~l~~~l~~~g 298 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAREG 298 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHTTT
T ss_pred CCChhhH-HHHHHHHHHHHhcC
Confidence 9999876 44444444 33334
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.50 E-value=4.4e-16 Score=148.33 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=87.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh--
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL-- 192 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~-- 192 (352)
.++.+++|+|++|||||||+++|++++.+. | . . ...+.+|+|+..+++. ++++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~---~~~~~iv~~D~f~~~~-~~~~~l~~~~~~ 89 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G---EKSIGYASIDDFYLTH-EDQLKLNEQFKN 89 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G---GSCEEEEEGGGGBCCH-HHHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C---CceEEEeccccccCCh-HHHHHHhccccc
Confidence 468899999999999999999999999764 2 0 0 1135666999988874 8999998752
Q ss_pred ---hhcCCCCHHHHHHHHHHHHHHcCCC--------cccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 193 ---YENSKMRDEQISELVKENLAAVGLK--------GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 193 ---~~~~~~~~~~~~~~v~~~l~~~gL~--------~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
....+.+.....+.+.+.++.+.-. .....+...+||||+||+++|++... +|+|||+||||
T Consensus 90 ~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-------~~~IlIlEG~~ 162 (290)
T 1odf_A 90 NKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-------PVDIFILEGWF 162 (290)
T ss_dssp CGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-------SCSEEEEEESS
T ss_pred cchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-------CCCEEEEeCcc
Confidence 1111111111122344555555322 12345568999999999999844431 39999999999
Q ss_pred CCCCHH
Q 018638 262 AGLDPI 267 (352)
Q Consensus 262 sgLD~~ 267 (352)
+++|+.
T Consensus 163 ~~ld~~ 168 (290)
T 1odf_A 163 LGFNPI 168 (290)
T ss_dssp TTCCCC
T ss_pred ccCCcc
Confidence 999985
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.48 E-value=7.1e-17 Score=154.48 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=78.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEEcCCCchHHHHHHHHHcCCC--CCceEEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKI-------------------RHGEAVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i-------------------~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~ 149 (352)
+|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 589999999994 6899999988 8999999999999999999999999998 9999999
Q ss_pred E---CCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhh
Q 018638 150 I---RGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLL 192 (352)
Q Consensus 150 i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~ 192 (352)
+ +|.... ... ...+|++ |+..+++.+++.+|+.+..
T Consensus 115 vi~~d~~~~~----~~~--~~~~~~v-q~~~~~~~~~~~~~~~~~~ 153 (308)
T 1sq5_A 115 LITTDGFLHP----NQV--LKERGLM-KKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEGGGGBCC----HHH--HHHHTCT-TCTTSGGGBCHHHHHHHHH
T ss_pred EEecCCccCc----HHH--HHhCCEe-ecCCCCCCccHHHHHHHHH
Confidence 9 886531 121 1247888 8888778889999998754
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.2e-18 Score=161.46 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=104.3
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCC-CCCC
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSA-ALFD 180 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~-~l~~ 180 (352)
+...+++++++++++| ++|+||||||||||+|+|+|.+.+ |.|.++|.++....... ...+++++||.. ..+|
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~--~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGE--SERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHH--HHHHHHHHHHHHHHTCS
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhH--HHHHHHHHHHHHHhcCC
Confidence 4456889999999999 999999999999999999999887 79999997764322111 122588999975 5566
Q ss_pred CCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCC
Q 018638 181 SLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEP 260 (352)
Q Consensus 181 ~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEP 260 (352)
.+++.|++.+..... ... ... .+....++.+.+|||||+||+.|++|+.+ +|++| |||
T Consensus 105 ~i~~~Deid~~~~~r---~~~----~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn-------~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR---SDR----ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATN-------RPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC----------------------CTTHHHHHHHHHHTCCSTTCEEEEEEES-------CGGGS--CHH
T ss_pred CeEeeehhhhhhccc---CCC----cch------HHHHHHHHHHHhhhcccccCCEEEEeecC-------ChhhC--CHh
Confidence 677778876532110 000 000 13345677788999999999999999986 58875 998
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 018638 261 TA------------GLDPIASTVVEDLI 276 (352)
Q Consensus 261 ts------------gLD~~~~~~l~~ll 276 (352)
+. --|...+.++++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666666665543
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=2.8e-14 Score=122.67 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=69.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+|+++ +|+.++|+||||||||||+++|++.+.+ +| .+++++.++ ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------------------~~~-- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------------------PLT-- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------------------CCC--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------------------hHH--
Confidence 45555 8999999999999999999999999876 46 444443221 000
Q ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCC
Q 018638 184 VRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAG 263 (352)
Q Consensus 184 V~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsg 263 (352)
+++. +|++|++|||++
T Consensus 79 --------------------------------------------------------~~~~-------~~~lLilDE~~~- 94 (149)
T 2kjq_A 79 --------------------------------------------------------DAAF-------EAEYLAVDQVEK- 94 (149)
T ss_dssp --------------------------------------------------------GGGG-------GCSEEEEESTTC-
T ss_pred --------------------------------------------------------HHHh-------CCCEEEEeCccc-
Confidence 1233 499999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCceE-EEEEcCC
Q 018638 264 LDPIASTVVEDLIRSVHKKGENGLANPGNIAS-YVVVTHQ 302 (352)
Q Consensus 264 LD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~t-vIivTHd 302 (352)
+|...+..+++++.++.++| .+ +|++||.
T Consensus 95 ~~~~~~~~l~~li~~~~~~g----------~~~iiits~~ 124 (149)
T 2kjq_A 95 LGNEEQALLFSIFNRFRNSG----------KGFLLLGSEY 124 (149)
T ss_dssp CCSHHHHHHHHHHHHHHHHT----------CCEEEEEESS
T ss_pred cChHHHHHHHHHHHHHHHcC----------CcEEEEECCC
Confidence 66666899999999988776 36 8888884
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=1.4e-15 Score=146.11 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=70.6
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEE---CCEeCCCCCChhhhccceEEEEecCCCCCC----CCCH
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYI---RGRKRAGLISDEEISGLRIGLVFQSAALFD----SLTV 184 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i---~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~----~lTV 184 (352)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+...... ...+..+||++|.|.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~---~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV---ELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC---CEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH---HHhhcCCEEEecCCCccccccccCCH
Confidence 667899999999999999999999999999999999999 887654321 111112699999997754 6789
Q ss_pred HHHHH--hh-hhh-------cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHH
Q 018638 185 RENVG--FL-LYE-------NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKR 234 (352)
Q Consensus 185 ~eni~--~~-~~~-------~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQR 234 (352)
||+. |+ +.. ..+....+...++.++++.++|.+...+...+|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 8883 33 110 1111112223458899999999875555556677778773
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.43 E-value=6.7e-16 Score=138.79 Aligned_cols=152 Identities=21% Similarity=0.189 Sum_probs=83.2
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+|+++...++. +..+|+.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------------~~~g~v~~d~~~~~~-~~~~~~~~~~~ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------------LPAEVVPMDGFHLDN-RLLEPRGLLPR 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------------CCEEEEESGGGBCCH-HHHGGGTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------------CceEEEecCCCcCCH-HHHHHhccccc
Confidence 4789999999999999999999999999864 2 024445444433321 22222211000
Q ss_pred h--cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHH-HHHhccCCCCCCCCcEEEEeCCCCCCCHHHHH
Q 018638 194 E--NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALA-RSIIFDNTKESVEPEVLLYDEPTAGLDPIAST 270 (352)
Q Consensus 194 ~--~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIA-rAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~ 270 (352)
. ..........+.+..+-..-.+.-........+|+||+||+++| ++++. ++.++++|||.-
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~-------eg~~~l~de~~~-------- 141 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAII-------EGNYLLFDAPGW-------- 141 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEE-------EESSTTBCSTTG--------
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEE-------CCceeccCCchh--------
Confidence 0 00011122222222211110111111223345799999999998 87775 477888888831
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHH-HHhhcCEEEEEeCCe
Q 018638 271 VVEDLIRSVHKKGENGLANPGNIASYVVVTHQHST-IRRAVDRLIFLYEGK 320 (352)
Q Consensus 271 ~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~-i~~~aDrv~vL~~G~ 320 (352)
.++...- -.+|+++++.+. +.+++.|. +..|.
T Consensus 142 ------~~l~~~~----------d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 142 ------RDLTAIW----------DVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp ------GGGGGTC----------SEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred ------HHHHHhc----------CEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 0111111 157788888776 55666662 45565
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=4.2e-17 Score=161.58 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=117.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc------------CCCCCceEEEECCEeCCCCCChhhhccce---EEEEecCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG------------LLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQSAA 177 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G------------l~~p~~G~I~i~G~~~~~~~~~~~~~~~~---ig~v~Q~~~ 177 (352)
++++|..++|+|+||||||||+|+|+| ...|+.|.|.+.|.++..+ ......++. ..++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l-~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL-CEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH-HHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh-hhhcccccccCcceEEEeccc
Confidence 557899999999999999999999999 6789999999987532110 000001112 347788888
Q ss_pred CCCCCCHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCC--c
Q 018638 178 LFDSLTVRENV--GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEP--E 253 (352)
Q Consensus 178 l~~~lTV~eni--~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p--~ 253 (352)
+++..+..|++ .|..... . +..++..+++. .+..+..+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir-~---------~d~il~Vvd~~--~d~~i~~v~~~~-------------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVR-A---------VDAIYQVVRAF--DDAEIIHVEGDV-------------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHT-T---------CSEEEEEEECC--CTTCSSCCSSSS-------------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHH-H---------HHHHHHHHhcc--ccceeeeecccc-------------------Ccchh
Confidence 88877776655 2221111 0 01111112221 133444455542 48 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE-EEeCC-eEEEeec
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSV-HKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI-FLYEG-KIVWQGM 326 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l-~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~-vL~~G-~iv~~g~ 326 (352)
++++|||+.++|+......++.+..+ .+.| .|++ +|++..+..+||++. +|++| +++..|+
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g----------~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGA----------NTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----------CSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcC----------Cccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 99999999999999999999999887 5544 3543 999999999999999 99999 8876654
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.31 E-value=1.2e-12 Score=124.83 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=94.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE 194 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~ 194 (352)
.+|++++|+|||||||||+++.|++.+.+++| +++.++.+++. ..++.+++....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------------~~V~lv~~D~~---r~~a~eqL~~~~-- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------------KKIAFITTDTY---RIAAVEQLKTYA-- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------------CCEEEEECCCS---STTHHHHHHHHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------------CEEEEEecCcc---cchHHHHHHHHH--
Confidence 47999999999999999999999999988777 13667777652 235555554321
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 018638 195 NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVED 274 (352)
Q Consensus 195 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ 274 (352)
+..|+..... .+ +..-+.+|+++ . +|+++|+| |+|+|+.....+.+
T Consensus 158 -----------------~~~gl~~~~~-----~~-~~~l~~al~~~--~-------~~dlvIiD--T~G~~~~~~~~~~e 203 (296)
T 2px0_A 158 -----------------ELLQAPLEVC-----YT-KEEFQQAKELF--S-------EYDHVFVD--TAGRNFKDPQYIDE 203 (296)
T ss_dssp -----------------TTTTCCCCBC-----SS-HHHHHHHHHHG--G-------GSSEEEEE--CCCCCTTSHHHHHH
T ss_pred -----------------HhcCCCeEec-----CC-HHHHHHHHHHh--c-------CCCEEEEe--CCCCChhhHHHHHH
Confidence 2233322111 12 23346666653 4 59999999 99999876655555
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEE-EcCCHHHHHhhcCEEEEEeCCeEEEee
Q 018638 275 LIRSVHKKGENGLANPGNIASYVV-VTHQHSTIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 275 ll~~l~~~g~~~~~~~~~~~tvIi-vTHdl~~i~~~aDrv~vL~~G~iv~~g 325 (352)
+.+-+.... +.. .++|+ ++|+.+.+.++++++..+..+.++...
T Consensus 204 l~~~l~~~~------~~~-~~lVl~at~~~~~~~~~~~~~~~l~~~giVltk 248 (296)
T 2px0_A 204 LKETIPFES------SIQ-SFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTK 248 (296)
T ss_dssp HHHHSCCCT------TEE-EEEEEETTBCHHHHHHHTTTTSSSCCCEEEEEC
T ss_pred HHHHHhhcC------CCe-EEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 443332100 000 23444 499999999999988777778887643
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.30 E-value=4.4e-14 Score=144.11 Aligned_cols=181 Identities=17% Similarity=0.123 Sum_probs=114.5
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRE 186 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~e 186 (352)
.+++++.++..+.|.|++||||||+++.|.. +..++.|+|.+.+.|.... .+.... .-|.++. +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~----el~~~~-----~lPhl~~--~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML----ELSVYE-----GIPHLLT--EVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS----GGGGGT-----TCTTBSS--SCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh----hhhhhc-----cCCcccc--eeec
Confidence 4778889999999999999999999999876 6677778888877765421 111000 0011111 1222
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccc---cCCCCCChHHHHHH----------HHHHHHhccCCCCCCCCc
Q 018638 187 NVGFLLYENSKMRDEQISELVKENLAAVGLKGVED---RLPSELSGGMKKRV----------ALARSIIFDNTKESVEPE 253 (352)
Q Consensus 187 ni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~---~~~~~LSGGqrQRv----------aIArAL~~~~~~~a~~p~ 253 (352)
|......... ....+++++. ++++.+|+.++.. +....+|+||+|+. ++|+++.. .|.
T Consensus 228 d~~~a~~~L~-~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~-------lP~ 298 (512)
T 2ius_A 228 DMKDAANALR-WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK-------EPY 298 (512)
T ss_dssp SHHHHHHHHH-HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC-------CCE
T ss_pred CHHHHHHHHH-HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc-------CCc
Confidence 2221111000 1234566664 6788899875432 23456899998763 24455542 587
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH-------HHHhhcCEEEEE
Q 018638 254 -VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS-------TIRRAVDRLIFL 316 (352)
Q Consensus 254 -llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~-------~i~~~aDrv~vL 316 (352)
++++||+++-+|. ....+.+.|.++.+.|+. . +.++|++||+++ ....+.+||.+-
T Consensus 299 ivlvIDE~~~ll~~-~~~~~~~~l~~Lar~gRa-~-----GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 299 IVVLVDEFADLMMT-VGKKVEELIARLAQKARA-A-----GIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp EEEEEETHHHHHHH-HHHHHHHHHHHHHHHCGG-G-----TEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred EEEEEeCHHHHHhh-hhHHHHHHHHHHHHHhhh-C-----CcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 8999999998884 345677888887665420 0 168999999987 455666777663
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.29 E-value=1.2e-12 Score=124.77 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=94.4
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGL 171 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~ 171 (352)
+.++++++.|+... ++++|+ +|++++|+|+||+||||+++.|+|++.+..|+|.+.+.+... ...
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~---~~~-------- 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR---PAA-------- 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC---HHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc---HhH--------
Confidence 55678888887543 788998 899999999999999999999999999999999998765421 100
Q ss_pred EecCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCC
Q 018638 172 VFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVE 251 (352)
Q Consensus 172 v~Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~ 251 (352)
+ +.+. .+.+..++.-..... ..+..+.+|.+|+++... +
T Consensus 142 ------------~-~ql~-------------------~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~-------~ 180 (295)
T 1ls1_A 142 ------------R-EQLR-------------------LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLE-------A 180 (295)
T ss_dssp ------------H-HHHH-------------------HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHH-------T
T ss_pred ------------H-HHHH-------------------HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhC-------C
Confidence 0 0000 012233443221100 123345578999998765 5
Q ss_pred CcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 018638 252 PEVLLYDEP-TAGLDPIASTVVEDLIRSVH 280 (352)
Q Consensus 252 p~llLLDEP-tsgLD~~~~~~l~~ll~~l~ 280 (352)
++++|+||| +.++|.....++.++.+.+.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 999999999 99999988888877776653
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.28 E-value=2.2e-12 Score=123.77 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=82.9
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHH
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENV 188 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni 188 (352)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|... . + ..++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---~--------~-------------a~eq- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---A--------A-------------AIEQ- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---H--------H-------------HHHH-
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---H--------H-------------HHHH-
Confidence 3566678999999999999999999999999999998999887765311 0 0 0111
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH---HHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 189 GFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV---ALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv---aIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+..+++.+++.. ...+|+|+.|++ +|++++.. +|+++|+|||..
T Consensus 151 ------------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~-------~~dvvIiDtpg~--- 197 (306)
T 1vma_A 151 ------------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALAR-------NKDVVIIDTAGR--- 197 (306)
T ss_dssp ------------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHT-------TCSEEEEEECCC---
T ss_pred ------------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhc-------CCCEEEEECCCc---
Confidence 223455566643 235789999999 99999986 699999999974
Q ss_pred HHHHHHHHHHHHHHH
Q 018638 266 PIASTVVEDLIRSVH 280 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~ 280 (352)
......+++.|.++.
T Consensus 198 ~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 198 LHTKKNLMEELRKVH 212 (306)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 334455555555554
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.28 E-value=7.9e-13 Score=134.03 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=49.4
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 5689999999999 999999999999999999999999999999999998764
No 155
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.25 E-value=4.7e-13 Score=121.31 Aligned_cols=171 Identities=14% Similarity=0.172 Sum_probs=88.5
Q ss_pred eeEee-eEEEeCCcEEEEEcCCCchHHHHHH-HHHcCCCCCceEEEECCEeCCCCCChhhhcc--ceEEEEecCCCCCCC
Q 018638 106 ILRGV-SFKIRHGEAVGIIGPSGTGKSTILK-IIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFDS 181 (352)
Q Consensus 106 ~L~~v-sl~i~~Ge~~~IiGpNGsGKSTLlk-~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~--~~ig~v~Q~~~l~~~ 181 (352)
.|+.+ .--+++|++++|+||||||||||+. ++.+..+...+.+++.++. ....... .++|+.+|+......
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-----~~~~~~~~~~~~g~~~~~~~~~~~ 85 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-----HPVQVRQNMAQFGWDVKPYEEKGM 85 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence 45555 5578999999999999999999954 5555555544555555432 1111110 113333322100000
Q ss_pred CCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCC
Q 018638 182 LTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPT 261 (352)
Q Consensus 182 lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPt 261 (352)
+++.+. . .. .++.....+.....-+....+....++.++.. .+|+++++|+|+
T Consensus 86 l~~~~~----------~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~vviD~~~ 138 (247)
T 2dr3_A 86 FAMVDA----------F-TA-----------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRD-----INAKRVVVDSVT 138 (247)
T ss_dssp EEEEEC----------S-TT-----------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHH-----HTCCEEEEETSG
T ss_pred EEEEec----------c-hh-----------hcccccccccccccCccCHHHHHHHHHHHHHH-----hCCCEEEECCch
Confidence 000000 0 00 00000000001111111222333333333321 269999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHH-HcCCCCCCCCCCceEEEEEcCCHHH--------HHhhcCEEEEEeC
Q 018638 262 AGL--DPIASTVVEDLIRSVH-KKGENGLANPGNIASYVVVTHQHST--------IRRAVDRLIFLYE 318 (352)
Q Consensus 262 sgL--D~~~~~~l~~ll~~l~-~~g~~~~~~~~~~~tvIivTHdl~~--------i~~~aDrv~vL~~ 318 (352)
+.+ |+....+++..+.++. +.| +|||+++|.... +..+||.|++|+.
T Consensus 139 ~l~~~~~~~~~~~l~~l~~~~~~~~----------~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 139 TLYINKPAMARSIILQLKRVLAGTG----------CTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGTTTCGGGHHHHHHHHHHHHHHTT----------CEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCC----------CeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 988 6544455555555554 444 699999998876 5678899999974
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.25 E-value=9.8e-13 Score=132.09 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=116.3
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEEECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+. +......+-++... ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~----s~~~l~~r~~~~~~-------~~ 258 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM----SAQQLVMRMLCAEG-------NI 258 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS----CHHHHHHHHHHHHH-------TC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC----CHHHHHHHHHHHHc-------CC
Confidence 3468888888999999999999999999999999987766444 455443221 11111110000000 01
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.. +.+. ......++ .+++.++++.++..+..-..+..+|.+|.+ +.+|.++.. .+|+++++|+++.
T Consensus 259 ~~-~~l~-----~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~-----~~~~livID~l~~ 324 (454)
T 2r6a_A 259 NA-QNLR-----TGKLTPED-WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQE-----SGLGMIVIDYLQL 324 (454)
T ss_dssp CH-HHHH-----TSCCCHHH-HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTT-----TCCCEEEEECGGG
T ss_pred CH-HHHh-----cCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHH-----cCCCEEEEccHHH
Confidence 11 1111 11233333 234556666665444433445789999876 677777742 4799999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcC---------C--HH--------HHHhhcCEEE
Q 018638 263 GLD--------PIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTH---------Q--HS--------TIRRAVDRLI 314 (352)
Q Consensus 263 gLD--------~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTH---------d--l~--------~i~~~aDrv~ 314 (352)
-.+ .....++.+.|+.++++ + ++||+++| + +. .+...||.|+
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~----------i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi 394 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELE----------VPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVA 394 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHT----------CCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEE
Confidence 774 23446677777877755 4 68999999 3 22 5677899999
Q ss_pred EEeCCeE
Q 018638 315 FLYEGKI 321 (352)
Q Consensus 315 vL~~G~i 321 (352)
+|+.++.
T Consensus 395 ~l~r~~~ 401 (454)
T 2r6a_A 395 FLYRDDY 401 (454)
T ss_dssp EEEETTC
T ss_pred EEecccc
Confidence 9987654
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.24 E-value=2e-16 Score=148.28 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=92.3
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++....... ...+++
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~--~~~~i~ 122 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGV--GAARVR 122 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTH--HHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhH--HHHHHH
Confidence 345677888887778999999999999 99999999999999999999885 799999887643211111 112477
Q ss_pred EEecCCC-CCCCCCHHHHHHhhh-hhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhc
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLL-YENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIF 243 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~-~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~ 243 (352)
++||... .++.+++.|++.... ..... ...++..+.+.++ +.+|||||+||+.|++|+.+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecC
Confidence 8888763 566678888885322 11100 0111222222222 34689999999999999986
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.24 E-value=1.9e-16 Score=146.07 Aligned_cols=143 Identities=14% Similarity=0.208 Sum_probs=97.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
..+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........ ..+++
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~--~~~i~ 98 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 98 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHH--HHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHH--HHHHH
Confidence 456778888887778899999999999 99999999999999999999885 7899998865422111111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHh-hhhhcCC--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGF-LLYENSK--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~-~~~~~~~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
++||... .++.+++.|++.. +...... ...++..+.+.++ ..+|||||+||+.|++|+.+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~--- 162 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATN--- 162 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEES---
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccC---
Confidence 8888753 5666778888843 2211110 0111222222222 34688999999999999986
Q ss_pred CCCCCCcEEEEeCCC
Q 018638 247 KESVEPEVLLYDEPT 261 (352)
Q Consensus 247 ~~a~~p~llLLDEPt 261 (352)
+|++ +|++.
T Consensus 163 ----~p~~--ld~~l 171 (254)
T 1ixz_A 163 ----RPDI--LDPAL 171 (254)
T ss_dssp ----CGGG--SCGGG
T ss_pred ----Cchh--CCHHH
Confidence 4665 56654
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.23 E-value=2.6e-13 Score=125.00 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=52.0
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCCh------hhh
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD------EEI 164 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~------~~~ 164 (352)
.|+++|+.+.|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 5889998776642 566666 89999999999999999999999999999999999876332111 111
Q ss_pred ccceEEEEecC
Q 018638 165 SGLRIGLVFQS 175 (352)
Q Consensus 165 ~~~~ig~v~Q~ 175 (352)
.+.+++|++|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 23469999974
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.23 E-value=2.9e-13 Score=119.78 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=54.0
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+.......... ...+++|+||++.+|+.+++.+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPG--DQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTT--CCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchh--HhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67888999999999999999999999999974 5788887654322111 12358999999888877777766544
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.19 E-value=1.3e-11 Score=120.20 Aligned_cols=78 Identities=9% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCCCCCCCCCceE
Q 018638 233 KRVALARSIIFDNTKESVEPEVLLYDEPTAGL----------DP---IASTVVEDLIRSV----HKKGENGLANPGNIAS 295 (352)
Q Consensus 233 QRvaIArAL~~~~~~~a~~p~llLLDEPtsgL----------D~---~~~~~l~~ll~~l----~~~g~~~~~~~~~~~t 295 (352)
|-+.++++++.. .+|+++++|||++.+ |+ ...+.+.+.+++| ++.+ +|
T Consensus 126 ~~l~~~~~l~~~-----~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~----------~t 190 (349)
T 2zr9_A 126 QALEIADMLVRS-----GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSG----------TT 190 (349)
T ss_dssp HHHHHHHHHHTT-----TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT----------CE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhC----------CE
Confidence 345578888752 469999999999998 33 2223445555555 3445 69
Q ss_pred EEEEcCCHH----------------HHHhhcCEEEEEeCCeEEEee
Q 018638 296 YVVVTHQHS----------------TIRRAVDRLIFLYEGKIVWQG 325 (352)
Q Consensus 296 vIivTHdl~----------------~i~~~aDrv~vL~~G~iv~~g 325 (352)
||+++|-.. .+..+||.++.++.++++..|
T Consensus 191 VI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 191 AIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp EEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred EEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 999999643 256789999999887765554
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.15 E-value=3.8e-13 Score=139.72 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=105.5
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCc-eEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDK-GEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++.-||...+++++++.+.+|+.+.|+||||+|||||+++|++++++.. |.+.+++...... ...++++|
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-------~p~i~~~p 110 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-------MPRIKTVP 110 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-------SCEEEEEE
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-------CCcEEEEe
Confidence 344556788889999999999999999999999999999999999999987 8888877643221 12588887
Q ss_pred cCC----------------------CCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHH
Q 018638 174 QSA----------------------ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGM 231 (352)
Q Consensus 174 Q~~----------------------~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGq 231 (352)
+.. ..+..+++.+|+..........+. ..+......+.+|.-+........+|+|+
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCccccc
Confidence 753 122233333333211000000000 00000011223332222223346799999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 232 KKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 232 rQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
+|++..++.... ++.+|++||... |++..+..+++.|.+
T Consensus 189 ~~~i~~g~~~~a-------~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 189 HERVEPGMIHRA-------HKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGGEECCHHHHT-------TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccCceeeec-------CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999888887764 599999999988 899888888887764
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.06 E-value=6.3e-11 Score=104.26 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC-----------CceEEEECCEeC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP-----------DKGEVYIRGRKR 155 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p-----------~~G~I~i~G~~~ 155 (352)
.++|+|+||||||||++.++|...| ++|+|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 5899999999999999999998876 579999999754
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=1.1e-10 Score=106.00 Aligned_cols=191 Identities=12% Similarity=0.018 Sum_probs=76.2
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA-GLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLT 183 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~-Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lT 183 (352)
+..+++||++++|++++|+||||||||||+++|+ |++++. +.+.+........ .....++|.|+++..|..++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARK-GEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCc-cccCCCeEEEecHHHhhhhh
Confidence 4678999999999999999999999999999999 998652 2222211110000 00112446777655444443
Q ss_pred HHHHHHhhhhhc---CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHH-HHHH-HHhccCCCCCCCCcEEEEe
Q 018638 184 VRENVGFLLYEN---SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRV-ALAR-SIIFDNTKESVEPEVLLYD 258 (352)
Q Consensus 184 V~eni~~~~~~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRv-aIAr-AL~~~~~~~a~~p~llLLD 258 (352)
+.+++....... .+...+. +.++++.-. .-..+-.+. -...-++++ .-++ .++. .|+..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~-~vild~~~~-g~~~~~~~~~~~~~~v~v~-------~~~~~~l~ 155 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRKN----LEDNVDKGV-STLLVIDWQ-GAFKFMEMMREHVVSIFIM-------PPSMEELR 155 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECTT----HHHHHHHTC-EEEEECCHH-HHHHHHHHSGGGEEEEEEE-------CSCHHHHH
T ss_pred hcCceehhhhhccccCCCCHHH----HHHHHHcCC-eEEEEcCHH-HHHHHHHhcCCCeEEEEEE-------CCcHHHHH
Confidence 333332110000 0011111 233333311 111111000 001113332 1111 2232 35667788
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEEeCCe
Q 018638 259 EPTAGLDPIASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGK 320 (352)
Q Consensus 259 EPtsgLD~~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL~~G~ 320 (352)
|++.+.|..+...+.+.|.....+ .+. ....+|+++|+++.+..-.++++-..+++
T Consensus 156 ~Rl~~R~~~~~~~i~~rl~~~~~~~~~~------~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 156 RRLCGRRADDSEVVEARLKGAAFEISHC------EAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp HC--------------CHHHHHHHHTTG------GGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhhh------cCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 999999988877777666554321 100 01468888999988877667665444444
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.90 E-value=5.8e-10 Score=98.25 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 018638 235 VALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 280 (352)
Q Consensus 235 vaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~ 280 (352)
...|++|+. +|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~-------~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAE-------KNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHH-------HTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456889987 49999999 99999999999998887653
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.90 E-value=3.4e-11 Score=107.18 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=49.7
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
.++.++|++++|+||||||||||+++|+|.+ |.+.++|.++.. .....+..+|+++|++.+++.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS---PENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC---HHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc---HHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 4667899999999999999999999999987 899999876531 111122246788887655555555555543
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.88 E-value=8.9e-11 Score=109.39 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=36.5
Q ss_pred ceEEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 90 VLIDCRNV-YKSF-GEKHILRGVSFKIRH---GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 90 ~~l~~~nl-s~~y-~~~~~L~~vsl~i~~---Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+++|| +|+| ++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 778899999999999 9999999999999999999999865
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.86 E-value=6.4e-10 Score=96.73 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred eee--EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE--eCCCCCCh--hhhccceEEEEecCCC
Q 018638 105 HIL--RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR--KRAGLISD--EEISGLRIGLVFQSAA 177 (352)
Q Consensus 105 ~~L--~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~--~~~~~~~~--~~~~~~~ig~v~Q~~~ 177 (352)
..+ +++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++...... .......|.++||++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7899999999 99999999999999999999999887765432221 11000000 0011235999999863
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.85 E-value=1.2e-09 Score=106.85 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=35.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE-EECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV-YIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I-~i~G~~ 154 (352)
=+++|+++.|.||+|||||||+..+++...+..|.| +++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 378999999999999999999999999887777765 555543
No 170
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.85 E-value=2.1e-10 Score=106.20 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH---cCCCCCceEEE--------ECCEeCCCCCChhhhccceEE
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEVY--------IRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I~--------i~G~~~~~~~~~~~~~~~~ig 170 (352)
+...++++.+ ++|++++|+|||||||||++++|+ |+..|++|.|+ .+|.++......... ..+++
T Consensus 15 ~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~ 90 (252)
T 4e22_A 15 PGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPL-AAHLD 90 (252)
T ss_dssp --------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHH-HHTCC
T ss_pred cchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHH-HHcCC
Confidence 3333444543 789999999999999999999999 99999999999 888876432222222 23588
Q ss_pred EEecCCC-----CCCCCCHHHHH
Q 018638 171 LVFQSAA-----LFDSLTVRENV 188 (352)
Q Consensus 171 ~v~Q~~~-----l~~~lTV~eni 188 (352)
++||... ++...++.+|+
T Consensus 91 ~~~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 91 VRFVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEEEETTEEEEEETTEECTTGG
T ss_pred EEEecCCCCceEEECCeehhHHH
Confidence 9997531 22334565655
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.77 E-value=3.1e-08 Score=96.91 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC-----------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHH
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA-----------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVREN 187 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~-----------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~en 187 (352)
+++|+|++|||||||++.|+|... |+.|.|.++|.++.-. + ..|++.+.+. ..|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~----D----T~G~i~~lp~----~lve~f 248 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV----D----TVGFIRGIPP----QIVDAF 248 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE----E----CCCBCSSCCG----GGHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE----e----CCCchhcCCH----HHHHHH
Confidence 399999999999999999999876 6778999988653100 0 1344444321 112110
Q ss_pred ---HHhhh------hhcCC-CCH---HHHHHHHHHHHHHcCCCccc----ccCCCCCChHHHHHHHHH----HHH-hccC
Q 018638 188 ---VGFLL------YENSK-MRD---EQISELVKENLAAVGLKGVE----DRLPSELSGGMKKRVALA----RSI-IFDN 245 (352)
Q Consensus 188 ---i~~~~------~~~~~-~~~---~~~~~~v~~~l~~~gL~~~~----~~~~~~LSGGqrQRvaIA----rAL-~~~~ 245 (352)
+.... ..... ... .+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++ ..
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~-- 326 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP-- 326 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC--
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC--
Confidence 00000 00000 111 22223356777877765432 345677898999998887 554 31
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 018638 246 TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 246 ~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~ 282 (352)
+|++ +|+|++|......+++.|.++...
T Consensus 327 -----~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 327 -----IFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp -----EEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----CCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 2444 899999999999999999887543
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.76 E-value=2.6e-10 Score=101.41 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=48.1
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE--EECCEeC
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV--YIRGRKR 155 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I--~i~G~~~ 155 (352)
+|++..++...+.+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 477888888888899999999999999999999999999999999987 77988 8888654
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.72 E-value=1.1e-09 Score=105.43 Aligned_cols=84 Identities=21% Similarity=0.160 Sum_probs=62.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCC----hhhhc---cceEEEE-ecCCCC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLIS----DEEIS---GLRIGLV-FQSAAL 178 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~----~~~~~---~~~ig~v-~Q~~~l 178 (352)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|...... ..+.. +.++.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998877542110 11111 3468999 777555
Q ss_pred CCCCCHHHHHHh
Q 018638 179 FDSLTVRENVGF 190 (352)
Q Consensus 179 ~~~lTV~eni~~ 190 (352)
.|..++++++..
T Consensus 175 ~p~~~~~~~l~~ 186 (320)
T 1zu4_A 175 DPASVVFDAIKK 186 (320)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 554445555543
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.67 E-value=5.1e-11 Score=121.32 Aligned_cols=144 Identities=14% Similarity=0.228 Sum_probs=95.5
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEE
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIG 170 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig 170 (352)
+.+++++.+.|....+++++++++++| +.|+||||+|||||+++|++... .+.|.++|.++........ ..++.
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~--~~~v~ 113 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVG--AARVR 113 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHH--HHHHH
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhH--HHHHH
Confidence 345666666676667899999999999 99999999999999999999875 7899999876543211111 12467
Q ss_pred EEecCCC-CCCCCCHHHHHHhhhhhcC-C--CCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 171 LVFQSAA-LFDSLTVRENVGFLLYENS-K--MRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 171 ~v~Q~~~-l~~~lTV~eni~~~~~~~~-~--~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
.+||... ..+...+.|+|........ . ...++..+.+.+++. +||||++|+..|++|..+
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn--- 177 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATN--- 177 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCS---
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecC---
Confidence 7888764 4556666677743211111 0 112222333334433 477888888888888865
Q ss_pred CCCCCCcEEEEeCCCC
Q 018638 247 KESVEPEVLLYDEPTA 262 (352)
Q Consensus 247 ~~a~~p~llLLDEPts 262 (352)
+|++ |||+.-
T Consensus 178 ----~p~~--LD~aLl 187 (499)
T 2dhr_A 178 ----RPDI--LDPALL 187 (499)
T ss_dssp ----CGGG--SCTTTS
T ss_pred ----Chhh--cCcccc
Confidence 4766 787765
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.66 E-value=3.6e-09 Score=92.94 Aligned_cols=33 Identities=39% Similarity=0.472 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~ 149 (352)
|++++|+||||||||||+++|+|++++..|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 678999999999999999999999986555443
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.64 E-value=1.7e-08 Score=97.99 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYEN 195 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~ 195 (352)
..-.++|+|++|+|||||++.++|.. +. ..+.+... ....++.+.++.. .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t-------~~~~~~~~~~~~~-----------~------ 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTT-------RGINVGQFEDGYF-----------R------ 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCS-------SCEEEEEEEETTE-----------E------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCee-------eceeEEEEEecCc-----------e------
Confidence 34579999999999999999999865 22 11111110 0113455544311 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEe-CCCCCCCHHHHHHHHH
Q 018638 196 SKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYD-EPTAGLDPIASTVVED 274 (352)
Q Consensus 196 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLD-EPtsgLD~~~~~~l~~ 274 (352)
+..++.....+..+.++|+|++|++. +.+... ++-++++| +|+.++|......+++
T Consensus 216 ---------------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~a-------d~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 216 ---------------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLG-------NLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp ---------------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTC-------SEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred ---------------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcC-------CEEEEEEeCCccccCCHHHHHHHHH
Confidence 00111222334567789999999876 444432 57899999 9999999998877777
Q ss_pred HHHHHHHcCCCCCCCCCCceEEEEEc--CCHH
Q 018638 275 LIRSVHKKGENGLANPGNIASYVVVT--HQHS 304 (352)
Q Consensus 275 ll~~l~~~g~~~~~~~~~~~tvIivT--Hdl~ 304 (352)
.+.++.. + ..+|+|. ||+.
T Consensus 273 ~i~~~~~-~----------~piilV~NK~Dl~ 293 (357)
T 2e87_A 273 EVHGEFK-D----------LPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHTT-T----------SCEEEEECCTTTC
T ss_pred HHHHhcC-C----------CCEEEEEECcccC
Confidence 6665432 3 3677777 8874
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.62 E-value=1.8e-08 Score=88.76 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
++|++|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999978766
No 178
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.62 E-value=4.5e-09 Score=93.27 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=72.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhhhcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKM 198 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~~~~~~ 198 (352)
+++|+|+|||||||+.++|+++ |...+++.++ .+ .+. .+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~-~~~--------~~~----------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AR-EVV--------AKD----------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HH-HTT--------CSS-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HH-HHc--------cCC-----------------
Confidence 6899999999999999999994 5555543211 00 000 000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 018638 199 RDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRS 278 (352)
Q Consensus 199 ~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~ 278 (352)
. ..+.++.+.+|...+ .+.|+.+|..+++.+.. +|+.+..+ .+.++|.....+.+.+..
T Consensus 44 ~-----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~-------~~~~~~~l--~~~~~p~v~~~~~~~~~~ 102 (206)
T 1jjv_A 44 S-----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFN-------HDEDKLWL--NNLLHPAIRERMKQKLAE 102 (206)
T ss_dssp C-----HHHHHHHHHHCTTCC-------------CHHHHHHHHHT-------CHHHHHHH--HHHHHHHHHHHHHHHHHT
T ss_pred h-----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhC-------CHHHHHHH--HhccCHHHHHHHHHHHHh
Confidence 0 012344555554322 36789999999988875 36543322 334556555555544432
Q ss_pred HHHcCCCCCCCCCCceEEEEEcCCHHHH--HhhcCEEEEEeC
Q 018638 279 VHKKGENGLANPGNIASYVVVTHQHSTI--RRAVDRLIFLYE 318 (352)
Q Consensus 279 l~~~g~~~~~~~~~~~tvIivTHdl~~i--~~~aDrv~vL~~ 318 (352)
. .+ .++|+.+|.+.+. ...||++++++-
T Consensus 103 ~--~~----------~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 103 Q--TA----------PYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp C--CS----------SEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred c--CC----------CEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 2 12 2788889988765 677899999864
No 179
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.60 E-value=4.3e-08 Score=104.66 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=56.0
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEE-E
Q 018638 222 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVV-V 299 (352)
Q Consensus 222 ~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts-gLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIi-v 299 (352)
..+.-+|.|+.+|..++++++. ++++||+|||.. +||......+++.+.....+. .+|++ +
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~-------~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~----------~iIl~SA 248 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLS-------RYSCIILDEAHERTLATDILMGLLKQVVKRRPDL----------KIIIMSA 248 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCT-------TEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC----------EEEEEES
T ss_pred CCEEEECHHHHHHHHhhCcccc-------CCCEEEecCccccccchHHHHHHHHHHHHhCCCc----------eEEEEec
Confidence 3456789999999999998875 699999999996 999876655555554433222 46777 5
Q ss_pred cCCHHHHHhhcCE
Q 018638 300 THQHSTIRRAVDR 312 (352)
Q Consensus 300 THdl~~i~~~aDr 312 (352)
||+.+.+.++.+.
T Consensus 249 T~~~~~l~~~~~~ 261 (773)
T 2xau_A 249 TLDAEKFQRYFND 261 (773)
T ss_dssp CSCCHHHHHHTTS
T ss_pred cccHHHHHHHhcC
Confidence 9999888888764
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.58 E-value=4.7e-08 Score=98.94 Aligned_cols=126 Identities=18% Similarity=0.309 Sum_probs=80.6
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEe
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVF 173 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~ 173 (352)
++++...|.....++++++.+++| +.|+||+|+|||||+++|++.... .+-++.
T Consensus 28 l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------~f~~is 81 (476)
T 2ce7_A 28 LKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------PFFHIS 81 (476)
T ss_dssp HHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------CEEEEE
T ss_pred HHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------CeeeCC
Confidence 334433344445677888888888 889999999999999999983210 011111
Q ss_pred cCCCCCCCCCHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 174 QSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 174 Q~~~l~~~lTV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
-. . +... ... .|++++|..+++|... .|.
T Consensus 82 ~~-~-~~~~----------------------------------------~~g--~~~~~~r~lf~~A~~~-------~p~ 110 (476)
T 2ce7_A 82 GS-D-FVEL----------------------------------------FVG--VGAARVRDLFAQAKAH-------APC 110 (476)
T ss_dssp GG-G-TTTC----------------------------------------CTT--HHHHHHHHHHHHHHHT-------CSE
T ss_pred HH-H-HHHH----------------------------------------Hhc--ccHHHHHHHHHHHHhc-------CCC
Confidence 00 0 0000 000 1677888889998875 599
Q ss_pred EEEEeCC----------CCCCCHHHHHHHHHHHHHHHH----cCCCCCCCCCCceEEEEEcCCHHHH
Q 018638 254 VLLYDEP----------TAGLDPIASTVVEDLIRSVHK----KGENGLANPGNIASYVVVTHQHSTI 306 (352)
Q Consensus 254 llLLDEP----------tsgLD~~~~~~l~~ll~~l~~----~g~~~~~~~~~~~tvIivTHdl~~i 306 (352)
||++||+ +.+.|......+.+++..+.. .+ ..||.+||+.+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~----------viVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG----------IIVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT----------EEEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC----------EEEEEecCChhhh
Confidence 9999999 447777777777778777742 22 6899999998654
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.54 E-value=1.2e-07 Score=91.95 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=35.8
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCceEEEECC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG--LLAPDKGEVYIRG 152 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G--l~~p~~G~I~i~G 152 (352)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++-..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 358999999999 899999999999999999999 7788878765443
No 182
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.51 E-value=2.3e-07 Score=90.03 Aligned_cols=128 Identities=11% Similarity=0.161 Sum_probs=81.7
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
.|+.+.--+.+|+++.|.|++|+|||||+.-++.-... .| ..+.|+.= .++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~g--------------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------DD--------------RGVAVFSL------EMSAE 87 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------TT--------------CEEEEEES------SSCHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEeC------CCCHH
Confidence 35555556899999999999999999999888764322 11 12444321 23443
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCC
Q 018638 186 ENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLD 265 (352)
Q Consensus 186 eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD 265 (352)
+.+ .++......+.+..+.+ ..||.+++||++.|...+. +++++|.|+|...+
T Consensus 88 ql~----------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~-------~~~l~I~d~~~~si- 140 (338)
T 4a1f_A 88 QLA----------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLS-------QKKLFFYDKSYVRI- 140 (338)
T ss_dssp HHH----------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHH-------HSCEEEECCTTCCH-
T ss_pred HHH----------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHh-------cCCeEEeCCCCCcH-
Confidence 322 22222222222222222 4799999999999999886 48999999997543
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCCCCCCceEEEEEc
Q 018638 266 PIASTVVEDLIRSVHKKG-ENGLANPGNIASYVVVT 300 (352)
Q Consensus 266 ~~~~~~l~~ll~~l~~~g-~~~~~~~~~~~tvIivT 300 (352)
.++...++++.++. + ..+|+|-
T Consensus 141 ----~~i~~~ir~l~~~~gg---------~~lIVID 163 (338)
T 4a1f_A 141 ----EQIRLQLRKLKSQHKE---------LGIAFID 163 (338)
T ss_dssp ----HHHHHHHHHHHHHCTT---------EEEEEEE
T ss_pred ----HHHHHHHHHHHHhcCC---------CCEEEEe
Confidence 35666777776552 2 5777774
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.48 E-value=3.5e-07 Score=87.76 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCCCCCCCCCceEEEEEcCCHHHHHhh
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHK---KGENGLANPGNIASYVVVTHQHSTIRRA 309 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~---~g~~~~~~~~~~~tvIivTHdl~~i~~~ 309 (352)
+|.+|++||+... |+.....+..++.++.. .+ .++|++||+.+....+
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~----------~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFR----------IALVIVGHNDAVLNNL 175 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCC----------EEEEEEESSTHHHHTS
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCC----------EEEEEEECCchHHHHh
Confidence 5889999999876 88888888888776654 23 6899999998655444
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=5.7e-08 Score=84.86 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYI 150 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i 150 (352)
+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999874 5566654
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=9.6e-08 Score=84.55 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=24.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999765
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.41 E-value=3e-09 Score=102.53 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=45.6
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCc------EEEEEcCCCchHHHHHHHHHcCCC--CCceEEE
Q 018638 95 RNVYKSFGEKHILRGVSFKIRHGE------AVGIIGPSGTGKSTILKIIAGLLA--PDKGEVY 149 (352)
Q Consensus 95 ~nls~~y~~~~~L~~vsl~i~~Ge------~~~IiGpNGsGKSTLlk~l~Gl~~--p~~G~I~ 149 (352)
+.|++.|++..+|++++..+.+++ ++||+||||||||||+++|++++. |+.|.|.
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 345566778889999999999887 999999999999999999999987 3444433
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.40 E-value=4.4e-08 Score=102.89 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=45.7
Q ss_pred eEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CceEEEECCEeCCCCCChhhhccceEEEEecCCCCC
Q 018638 111 SFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAP--DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALF 179 (352)
Q Consensus 111 sl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p--~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~ 179 (352)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| ++|..+.... ..+. ++.+++.+|...++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~-~~e~-~~giti~~~~~~~~ 70 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYT-PEAK-LHRTTVRTGVAPLL 70 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCS-HHHH-HTTSCCSCEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCC-HHHH-hcCCeEEecceEEe
Confidence 467889999999999999999999999987665 67888 6776554432 2221 22466766665544
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.37 E-value=7.6e-08 Score=87.44 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
-+.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445679999999999999999999999998 78899988753
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.34 E-value=5.5e-08 Score=86.46 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=38.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999998899998876554
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.27 E-value=5.2e-09 Score=101.21 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=56.8
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+++.+++.+.|+.+.+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 46667777778777889999999999999999999999999999999999988888888766654
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.25 E-value=2.5e-07 Score=83.13 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999999876
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=4e-07 Score=81.40 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=30.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEE
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVY 149 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~ 149 (352)
++|++++|+||||||||||+++|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 57999999999999999999999999987 334443
No 193
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.24 E-value=2.1e-07 Score=95.74 Aligned_cols=107 Identities=25% Similarity=0.256 Sum_probs=61.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EEE-ECCEeCCC-C-----CChhh--hccceEEEEecCCCCCCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EVY-IRGRKRAG-L-----ISDEE--ISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I~-i~G~~~~~-~-----~~~~~--~~~~~ig~v~Q~~~l~~~l 182 (352)
.+++|++++|+|+||||||||+++|+|++.|++| +|. ++|.++.. . ..... ...+++++++|+ +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------I 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------H
Confidence 5789999999999999999999999999999987 785 88865421 0 00100 001135666664 1
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCcccccCCCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVG--LKGVEDRLPSELS 228 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~g--L~~~~~~~~~~LS 228 (352)
++.+|+.+.. ...+.....+.+.++++.+| +.-+++..+..+.
T Consensus 439 ~~~~~ivi~~---~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~ 483 (552)
T 3cr8_A 439 TKNRGIAICA---PIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCE 483 (552)
T ss_dssp HHTTCEEEEC---CCCCCHHHHHHHHHHHHTTSEEEEEEECC------
T ss_pred HhcCCEEEEe---cCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHH
Confidence 2223332211 11122344566788888887 4444444444443
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.23 E-value=2.4e-07 Score=79.79 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999975 8889988654
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.18 E-value=1.9e-07 Score=91.80 Aligned_cols=139 Identities=12% Similarity=0.135 Sum_probs=82.9
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC-CCCCC
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA-LFDSL 182 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~-l~~~l 182 (352)
..+|+++|+.+++|++++|+||||||||||+++|+|. ..|++.... ... ... ...+|++||.+. ++++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~--~~~lg~~~q~~~~l~dd~ 225 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRL--NFELGVAIDQFLVVFEDV 225 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTH--HHHHGGGTTCSCEEETTC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhH--HHHHHHhcchhHHHHHHH
Confidence 3589999999999999999999999999999999995 467776511 110 110 113667777754 23333
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHH---HcCCC-------------cccccCCCCCChHHHHHHHHHHHHhccCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLA---AVGLK-------------GVEDRLPSELSGGMKKRVALARSIIFDNT 246 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~---~~gL~-------------~~~~~~~~~LSGGqrQRvaIArAL~~~~~ 246 (352)
+...++.- .............+...++ .+.+. ...+.....+++|++||++.+.+++.
T Consensus 226 ~~~~~~~r---~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~--- 299 (377)
T 1svm_A 226 KGTGGESR---DLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP--- 299 (377)
T ss_dssp CCSTTTTT---TCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC---
T ss_pred HHHHHHHh---hccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC---
Confidence 32221100 0000000000112233333 00011 23455667899999999998877764
Q ss_pred CCCCCCcEEE-EeCCCC
Q 018638 247 KESVEPEVLL-YDEPTA 262 (352)
Q Consensus 247 ~~a~~p~llL-LDEPts 262 (352)
.|++++ ||+|+.
T Consensus 300 ----~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 ----KDYLKHCLERSEF 312 (377)
T ss_dssp ----CHHHHHHHHTCTH
T ss_pred ----CCCeEEEEeCCHH
Confidence 588777 888876
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.17 E-value=9.2e-07 Score=78.35 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=29.1
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++-=++++|++++|+|++|||||||+++|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344678899999999999999999999999864
No 197
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.15 E-value=5.5e-08 Score=87.08 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC---CCCceEEEE--------CCEeCCCCCChhhhccceEEEEecCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL---APDKGEVYI--------RGRKRAGLISDEEISGLRIGLVFQSA 176 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~---~p~~G~I~i--------~G~~~~~~~~~~~~~~~~ig~v~Q~~ 176 (352)
+.+++|+||+||||||++++|++.+ .+++|.++. +|.++.......+. ..++++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPL-ASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHH-HHhCceeeecc
Confidence 5689999999999999999999766 788999887 56553210001111 22588888864
No 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.14 E-value=3.4e-07 Score=86.92 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCC---CCCCCCHHHH-HHhh
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAA---LFDSLTVREN-VGFL 191 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~---l~~~lTV~en-i~~~ 191 (352)
++.+++|+|++|+|||||++.|.|.. +.+...... .. .....|+++++.. +++ |.... -...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~----tT--r~~~~gi~~~~~~~i~~iD--TpG~~~~~~~ 72 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ----TT--RHRIVGIHTEGAYQAIYVD--TPGLHMEEKR 72 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS----CC--SSCEEEEEEETTEEEEEES--SSSCCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC----cc--eeeEEEEEEECCeeEEEEE--CcCCCccchh
Confidence 34589999999999999999999963 222111100 00 1123566766532 111 11000 0000
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHH-H
Q 018638 192 LYENSKMRDEQISELVKENLAAVGLKGV-EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIA-S 269 (352)
Q Consensus 192 ~~~~~~~~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~-~ 269 (352)
. . .+...+.+..+++.+++--+ .+. .. +|+|++ .+++.+.. ...|.++++ +.+|... +
T Consensus 73 ~-----l-~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~-----~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 73 A-----I-NRLMNKAASSSIGDVELVIFVVEG-TR-WTPDDE---MVLNKLRE-----GKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp H-----H-HHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHHH---HHHHHHHS-----SSSCEEEEE----ESTTTCCCH
T ss_pred h-----H-HHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHHH---HHHHHHHh-----cCCCEEEEE----ECcccCccH
Confidence 0 0 00000001111222222212 222 23 898886 56666652 135889998 7899876 6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEE
Q 018638 270 TVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLI 314 (352)
Q Consensus 270 ~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~ 314 (352)
..+.+.+.++.+... . ...+.+++|+-+-+..+.|.+.
T Consensus 133 ~~~~~~l~~l~~~~~--~-----~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 133 ADLLPHLQFLASQMN--F-----LDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHHTTSC--C-----SEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--c-----CceEEEECCCCCCHHHHHHHHH
Confidence 778888888876421 0 0356777887766666666543
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=4.2e-06 Score=83.67 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
++.+++++||+||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 588999999999999999999999998887888775554
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=7.4e-08 Score=92.30 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=44.5
Q ss_pred EEEeCCeeeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEEEE
Q 018638 98 YKSFGEKHILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEVYI 150 (352)
Q Consensus 98 s~~y~~~~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i 150 (352)
+..||...+++.++..|..|++ +.+.||+|+||||+++++++.+.+..+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 3346777789999999999998 9999999999999999999988776654433
No 201
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=5.8e-08 Score=99.66 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=52.5
Q ss_pred EEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 92 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 92 l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
+-++++.+.|+...+++++++++ +|++++|+||||+|||||+++|++++.+..|+|.+.|.
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 33566777776667889999998 89999999999999999999999999999999988774
No 202
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.05 E-value=5.5e-05 Score=68.36 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGE 147 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~ 147 (352)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766653
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.05 E-value=6.8e-06 Score=78.33 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=71.8
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCH
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTV 184 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV 184 (352)
..|+.+.--+++|+++.|.|++|+|||||+..++.-..- .| ..+.|+.=+ ++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g--------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND--------------DVVNLHSLE------MGK 108 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT--------------CEEEEEESS------SCH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC--------------CeEEEEECC------CCH
Confidence 346666656899999999999999999998888742110 01 124443321 344
Q ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCC
Q 018638 185 RENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGL 264 (352)
Q Consensus 185 ~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgL 264 (352)
.+-..- +......+.+..+.+.. ..||.++++|+..|...+. ++++++.|+|...
T Consensus 109 ~~l~~R----------------~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~-------~~~i~i~d~~~~~- 163 (315)
T 3bh0_A 109 KENIKR----------------LIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEIS-------NSNINIFDKAGQS- 163 (315)
T ss_dssp HHHHHH----------------HHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHH-------TSCEEEECCSCCB-
T ss_pred HHHHHH----------------HHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHh-------CCCEEEECCCCCC-
Confidence 332211 11111111111221111 2388899999998888875 4788888888643
Q ss_pred CHHHHHHHHHHHHHHHHc
Q 018638 265 DPIASTVVEDLIRSVHKK 282 (352)
Q Consensus 265 D~~~~~~l~~ll~~l~~~ 282 (352)
..++...++++.++
T Consensus 164 ----~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 164 ----VNYIWSKTRQTKRK 177 (315)
T ss_dssp ----HHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHh
Confidence 33455666666554
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.05 E-value=6.8e-07 Score=89.29 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCH-HHHHhhcCEEEE-EeCCeEEEeecc
Q 018638 251 EPEVLLYDEPTAGLDP-IASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQH-STIRRAVDRLIF-LYEGKIVWQGMT 327 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~-~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl-~~i~~~aDrv~v-L~~G~iv~~g~~ 327 (352)
+|++|++||+..-.+. ..+..++..+..+.+.| ..+|++||+. ..+..+.+++.- +..|.++...++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~----------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG----------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT----------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC----------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 4999999999876654 67888899998887766 4788899973 322222222222 345666555544
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.02 E-value=1.7e-06 Score=74.02 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.02 E-value=2.5e-05 Score=75.37 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999998874
No 207
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.93 E-value=5.7e-05 Score=72.09 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-+++|+++.|.||+|+|||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999988864
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.92 E-value=9.8e-07 Score=84.09 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
..+..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877554
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=2e-06 Score=74.36 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=32.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEe
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~ 154 (352)
.+|++++|+|++||||||++++|++.+++ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChH
Confidence 46999999999999999999999998866 56 66666644
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.90 E-value=6.9e-06 Score=69.96 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=25.2
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566655 999999999999999999873
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.89 E-value=7.1e-07 Score=89.08 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=50.4
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCC
Q 018638 94 CRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRA 156 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~ 156 (352)
.+++++.|+... ++++|+ ++++++++|+|||||||++..|++.+.+..|+|.+.+.|..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 446777787654 688888 89999999999999999999999999999999999876653
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.88 E-value=2.3e-06 Score=82.89 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=36.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999999988889888877654
No 213
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.88 E-value=8.9e-06 Score=80.91 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=85.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC------------CCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHH
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA------------PDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVR 185 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~------------p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~ 185 (352)
-.++|+|+||+|||||++.|+|... |.+|.+.++|+++.-+..... ++..++.+|....|..++..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~--~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL--RRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-------------CCSCCHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCC--ccccccchhhHHHHHHHHHH
Confidence 3799999999999999999999864 678999999986422111111 11244555665556555555
Q ss_pred HHHHhhh------hhcCCCCHHHHHHHHHHHHHHcCCCc-----ccccCCC-CCChHHHHHHHHHHHHhccCCCCCCCCc
Q 018638 186 ENVGFLL------YENSKMRDEQISELVKENLAAVGLKG-----VEDRLPS-ELSGGMKKRVALARSIIFDNTKESVEPE 253 (352)
Q Consensus 186 eni~~~~------~~~~~~~~~~~~~~v~~~l~~~gL~~-----~~~~~~~-~LSGGqrQRvaIArAL~~~~~~~a~~p~ 253 (352)
+++...- ....+.... ...+.+.+...+..- ..|.... +-+--+ -.-.+++.+... ...+
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~-----~~~~ 330 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE-FTKLFREKLYFI-----DYSP 330 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH-HHHHHHHHCGGG-----TTSC
T ss_pred HHHhhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH-HHHHHHHHhccC-----CCCc
Confidence 6654421 111112222 234555666655421 1111110 111111 111344544321 1234
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH
Q 018638 254 VLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR 307 (352)
Q Consensus 254 llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~ 307 (352)
++ ++|++.-....++++.+.+...+. +.-+.|+.++.+.
T Consensus 331 ~~----~~SA~~g~gv~~l~~~i~~~~~~~-----------~~~i~t~~ln~~l 369 (439)
T 1mky_A 331 LI----FTSADKGWNIDRMIDAMNLAYASY-----------TTKVPSSAINSAL 369 (439)
T ss_dssp EE----ECBTTTTBSHHHHHHHHHHHHHHH-----------TCCCCHHHHHHHH
T ss_pred EE----EEECCCCCCHHHHHHHHHHHHHhh-----------cccCCHHHHHHHH
Confidence 44 489999989999988888765542 2344677776543
No 214
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.86 E-value=2.8e-05 Score=72.36 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46678999999999999999999844
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.86 E-value=5.1e-06 Score=75.71 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=32.7
Q ss_pred eeEeeeEEEe---CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 106 ILRGVSFKIR---HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 106 ~L~~vsl~i~---~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
-|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3667777776 8999999999999999999999999887 6676543
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.83 E-value=1.7e-06 Score=85.32 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 91 LIDCRNVYKSFGE-KHILR--------------GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 91 ~l~~~nls~~y~~-~~~L~--------------~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+.++||++.|+. +..|+ |+++.|.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3789999999975 56899 899999999999999999999999999999875
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.81 E-value=3.1e-06 Score=75.39 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=37.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce--EEEECCEe
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG--EVYIRGRK 154 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G--~I~i~G~~ 154 (352)
+.+++|.+++|+|++||||||+.+.|++.+.|+.| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 88887643
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.78 E-value=5.4e-06 Score=88.87 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=28.5
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999874
No 219
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.78 E-value=4.1e-06 Score=73.60 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.4
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--------CCCCceEEEECCE
Q 018638 98 YKSFGE-KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (352)
Q Consensus 98 s~~y~~-~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--------~~p~~G~I~i~G~ 153 (352)
+++|++ ..+++++|++.+++. ++|+|++|+|||||++.+.+- ..++.+.+.++|.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 345654 368899999988885 789999999999999999872 2334566666653
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.74 E-value=6.8e-07 Score=84.99 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=49.2
Q ss_pred EEeEEEEeCCeeeeEe-eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 94 CRNVYKSFGEKHILRG-VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 94 ~~nls~~y~~~~~L~~-vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.+++.+.|++.. ++ ++|+++ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456666676543 56 888876 999999999999999999999999998889999877664
No 221
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.74 E-value=0.00019 Score=71.41 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=94.1
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCce-EE-EECCEeCCCCCChhhhccceEEEEecCCCCCCCC
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKG-EV-YIRGRKRAGLISDEEISGLRIGLVFQSAALFDSL 182 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G-~I-~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~l 182 (352)
..|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| .| +|..+ .+......+-+ .+... ++..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-----~~~~~l~~R~~---~~~~~-i~~~ 258 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-----MPAAQLTLRMM---CSEAR-IDMN 258 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-----SCHHHHHHHHH---HHHTT-CCTT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-----CCHHHHHHHHH---HHHcC-CCHH
Confidence 346666555899999999999999999999888765432222 22 22221 01111110000 00000 0000
Q ss_pred CHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCC
Q 018638 183 TVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTA 262 (352)
Q Consensus 183 TV~eni~~~~~~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPts 262 (352)
.++ ....+.++. +++.++++.+.-....-.....+|..+. .+.+|.+... .+++++++|..+.
T Consensus 259 ~l~---------~g~l~~~~~-~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~-----~~~~lIvID~l~~ 321 (444)
T 2q6t_A 259 RVR---------LGQLTDRDF-SRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQ-----NQVGLIIIDYLQL 321 (444)
T ss_dssp TCC---------GGGCCHHHH-HHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHH-----SCCCEEEEECGGG
T ss_pred HHh---------CCCCCHHHH-HHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHH-----cCCCEEEEcChhh
Confidence 000 001233322 2333444433222222122346676654 4566666642 3699999999876
Q ss_pred CCCH----------HHHHHHHHHHHHHHHc-CCCCCCCCCCceEEEEEcCC-------------HH------HHHhhcCE
Q 018638 263 GLDP----------IASTVVEDLIRSVHKK-GENGLANPGNIASYVVVTHQ-------------HS------TIRRAVDR 312 (352)
Q Consensus 263 gLD~----------~~~~~l~~ll~~l~~~-g~~~~~~~~~~~tvIivTHd-------------l~------~i~~~aDr 312 (352)
-.+. .....+...|+.++++ + ++||+++|- ++ .+...||.
T Consensus 322 ~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~----------v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~ 391 (444)
T 2q6t_A 322 MSGPGSGKSGENRQQEIAAISRGLKALARELG----------IPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADL 391 (444)
T ss_dssp CBCC-------CHHHHHHHHHHHHHHHHHHHT----------SCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSE
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhC----------CeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCE
Confidence 4432 1224556667777665 4 689999882 11 35678999
Q ss_pred EEEEeC
Q 018638 313 LIFLYE 318 (352)
Q Consensus 313 v~vL~~ 318 (352)
|++|..
T Consensus 392 vi~L~r 397 (444)
T 2q6t_A 392 VMFIYR 397 (444)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999953
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.73 E-value=2.2e-05 Score=68.28 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=27.3
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC--------CCCCceEEEECCE
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL--------LAPDKGEVYIRGR 153 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl--------~~p~~G~I~i~G~ 153 (352)
.++++++++.++. .++|+|++|+|||||++.+.+- ..++.+++.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4789999998887 6789999999999999999972 2233456666653
No 223
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.73 E-value=1.8e-06 Score=84.16 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=39.1
Q ss_pred eEEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 91 LIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 91 ~l~~~nls~~y~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.+.+.|+++.|+.+.++++++|+| +|+|++|+|||||++.|.|...+..|.+...+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 488999999998888999999987 99999999999999999988766656544333
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.70 E-value=5.6e-05 Score=73.55 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+++.|.|++|+|||||...++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999887754
No 225
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=2.7e-05 Score=73.34 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.++++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999865
No 226
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.67 E-value=4.4e-05 Score=65.36 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
No 227
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.59 E-value=4e-05 Score=68.41 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=24.6
Q ss_pred EeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 108 RGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 108 ~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.+.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999885
No 228
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.57 E-value=1.4e-05 Score=69.39 Aligned_cols=41 Identities=34% Similarity=0.423 Sum_probs=33.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE-ECC
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY-IRG 152 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~-i~G 152 (352)
+...+|.++.|+|++||||||+.+.|+..+.+..|.+. +++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34457999999999999999999999998887777664 444
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.54 E-value=3.5e-05 Score=67.07 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999875
No 230
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.51 E-value=0.00011 Score=62.16 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.50 E-value=4e-05 Score=67.26 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.50 E-value=9.4e-05 Score=71.85 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=27.8
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
.+++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 347788888775 99999999999999999986
No 233
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.48 E-value=6.8e-05 Score=64.13 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.43 E-value=5.8e-05 Score=66.71 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 235
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.42 E-value=6.6e-05 Score=74.16 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=34.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC-----------CCCCceEEEECCE
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL-----------LAPDKGEVYIRGR 153 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl-----------~~p~~G~I~i~G~ 153 (352)
.+..|..++|+|+||+|||||++.|+|. ..|..|.|.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898887653
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.0003 Score=61.46 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997543
No 237
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00045 Score=65.14 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=25.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcC
Q 018638 251 EPEVLLYDEPTA-GLDPIASTVVEDLIRSVHKKG 283 (352)
Q Consensus 251 ~p~llLLDEPts-gLD~~~~~~l~~ll~~l~~~g 283 (352)
++++|++||+-. .-+...+..+...+..+.+.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE 131 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC
Confidence 489999999865 334477888889998887665
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.28 E-value=8e-05 Score=65.27 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=29.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCC---ceEEEECCE
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPD---KGEVYIRGR 153 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~---~G~I~i~G~ 153 (352)
.+++|+|++|||||||++.|++.+++. -|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999876543 477777654
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.25 E-value=0.00012 Score=62.91 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPD 144 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~ 144 (352)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 48999999999999999999975443
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00031 Score=64.62 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998854
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00016 Score=62.28 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00014 Score=63.84 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
..+++|+|++||||||+.+.|++.+ |.+.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 4689999999999999999999865 45556543
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00013 Score=66.86 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=33.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEe
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 154 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~ 154 (352)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 567788999999999999999999998764 3567778754
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.13 E-value=4.6e-05 Score=74.31 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=33.3
Q ss_pred eeeEeeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCC
Q 018638 105 HILRGVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888889999998 9999999999999999999864
No 245
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.11 E-value=0.00022 Score=64.42 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=28.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc---CCCCCceEEE
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG---LLAPDKGEVY 149 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G---l~~p~~G~I~ 149 (352)
-.+|.+++|+|++||||||+.++|++ +..++.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 35788999999999999999999996 3335555554
No 246
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00016 Score=65.81 Aligned_cols=44 Identities=36% Similarity=0.481 Sum_probs=29.1
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
.++++++.+++| +.|+||+|+|||||+++|++..... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 355566666666 8899999999999999999876421 2445443
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.07 E-value=0.00027 Score=59.59 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.07 E-value=9.9e-05 Score=67.77 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHH---cCCCCCceEE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIA---GLLAPDKGEV 148 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~---Gl~~p~~G~I 148 (352)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4489999999999999999999 6555566655
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00035 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.97 E-value=0.00011 Score=64.55 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776543344
No 251
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.95 E-value=0.00021 Score=69.63 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=46.3
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHH------------hhcCEEEE
Q 018638 251 EPEVLLYDEPTAGLD---PIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIR------------RAVDRLIF 315 (352)
Q Consensus 251 ~p~llLLDEPtsgLD---~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~------------~~aDrv~v 315 (352)
.|.++++||-=.-++ +.....+.+++++.++.| ..++++||+++.+. ..|+..++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g----------~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~ 331 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYN----------GSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLL 331 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGT----------CEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEE
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhC----------eEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhhe
Confidence 589999999988884 677888888888888776 58999999997653 34566666
Q ss_pred EeCC
Q 018638 316 LYEG 319 (352)
Q Consensus 316 L~~G 319 (352)
+...
T Consensus 332 l~~~ 335 (392)
T 4ag6_A 332 LAQG 335 (392)
T ss_dssp CSCC
T ss_pred eCCC
Confidence 6654
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.93 E-value=0.00046 Score=59.14 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.001 Score=64.91 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999877664
No 254
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.89 E-value=0.00048 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+-+++|+|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00049 Score=57.63 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 018638 119 AVGIIGPSGTGKSTILKII 137 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l 137 (352)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.00047 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998643
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00041 Score=60.21 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCE
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 153 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~ 153 (352)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 457999999999999999999985 66666543
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.0011 Score=57.05 Aligned_cols=35 Identities=34% Similarity=0.682 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHH-cC----CCCCce----EEEECCE
Q 018638 119 AVGIIGPSGTGKSTILKIIA-GL----LAPDKG----EVYIRGR 153 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~-Gl----~~p~~G----~I~i~G~ 153 (352)
.++|+|++|+|||||++.+. +. ..|+.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 48899999999999996554 44 456666 5556654
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.82 E-value=0.00059 Score=59.09 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999844
No 260
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.80 E-value=0.015 Score=58.50 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
|+.+.--+++|+++.|.|++|+|||||+.-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 333332489999999999999999999776653
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.79 E-value=6.3e-05 Score=70.05 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=34.7
Q ss_pred CCeeeeEeeeEEEeCC-----------cEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 102 GEKHILRGVSFKIRHG-----------EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~G-----------e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
|...+++.+...+..+ ..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 3344555555555543 5899999999999999999999887766543
No 262
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.00096 Score=65.09 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc-----------CCCCCceEEEECC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG-----------LLAPDKGEVYIRG 152 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G-----------l~~p~~G~I~i~G 152 (352)
|-.++|||.+|+|||||++.|+| -..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4567788887765
No 263
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00062 Score=62.59 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 264
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.76 E-value=0.0004 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
..+.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.74 E-value=0.00078 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998643
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.71 E-value=0.00083 Score=56.97 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.++.|.|++||||||+.+.|+.. .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999871 12555555
No 267
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.00089 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 268
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.70 E-value=0.0015 Score=74.91 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=27.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
+++|+++.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999875543
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.70 E-value=0.00076 Score=59.66 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987543
No 270
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.69 E-value=0.00078 Score=57.58 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 271
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.00099 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
No 272
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.65 E-value=0.0015 Score=62.61 Aligned_cols=49 Identities=33% Similarity=0.343 Sum_probs=39.0
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc----CCCCCceEEEECC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG----LLAPDKGEVYIRG 152 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G----l~~p~~G~I~i~G 152 (352)
....+++..+.+ .|.-++|+|+||+|||||...+.+ |+..|...|...+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 456789988888 789999999999999999999987 5555555555443
No 273
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.65 E-value=0.003 Score=57.43 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCC----------HHHHHhhcCEEEEEe
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQ----------HSTIRRAVDRLIFLY 317 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHd----------l~~i~~~aDrv~vL~ 317 (352)
+++++++||--. |+.. +.+.++.+...+ .+||++-|+ ...+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~g----------i~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENG----------FVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTT----------CEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCC----------CeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 445566666555 589999992 456677999999864
No 274
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.001 Score=58.23 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.001 Score=57.31 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998543
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.63 E-value=0.00089 Score=62.81 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
..+.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4567899999999999999999987543 35667765
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0012 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 278
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.56 E-value=0.001 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
No 279
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.56 E-value=0.0012 Score=57.88 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.0011 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.|.|++||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 281
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0011 Score=61.00 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHHHHHhhcCEEEEE
Q 018638 260 PTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFL 316 (352)
Q Consensus 260 PtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~~i~~~aDrv~vL 316 (352)
|||+++.....++++.+.++..+.. .+..+..|..+.+.+.++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKV---------TTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCC---------CCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccc---------cCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999988765431 24466778888888887776443
No 282
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0012 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 283
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.49 E-value=0.0014 Score=56.56 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 284
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.45 E-value=0.0011 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
No 285
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.44 E-value=0.00081 Score=58.71 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987654
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.41 E-value=0.0052 Score=61.27 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.5
Q ss_pred eeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 106 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 106 ~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3454443589999999999999999999877764
No 287
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=56.02 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++.+.+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999998644
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0018 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 289
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.0013 Score=59.36 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=37.4
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHh
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGF 190 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~ 190 (352)
+.+|+.+.|+||+||||||++.++..-.....| ....++++++.|......++.+++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------------~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------------RAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------------CGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------------CCCceEEEEeccchHHHHHHHHHHHH
Confidence 356899999999999999998876431110000 01135677777765444566666654
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.30 E-value=0.0022 Score=56.86 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.29 E-value=0.0021 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 292
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.27 E-value=0.0021 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 293
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999854
No 294
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.27 E-value=0.0021 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.+++|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.25 E-value=0.002 Score=53.35 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 296
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.25 E-value=0.0019 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0023 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999973
No 298
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.23 E-value=0.0018 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.22 E-value=0.0026 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-++++|+|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.21 E-value=0.0026 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.20 E-value=0.002 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38899999999999999998753
No 302
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.20 E-value=0.0023 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999863
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.20 E-value=0.0022 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998854
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.19 E-value=0.0025 Score=55.57 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+++|.|+.||||||+.+.|+--+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 305
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.19 E-value=0.0025 Score=52.99 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.19 E-value=0.0028 Score=55.31 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+-+++|+|+.||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 307
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.19 E-value=0.0022 Score=55.82 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
No 308
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.19 E-value=0.0023 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 309
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.19 E-value=0.0036 Score=56.30 Aligned_cols=38 Identities=34% Similarity=0.359 Sum_probs=30.5
Q ss_pred CeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 103 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 103 ~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
....++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 445677776665 47889999999999999999998643
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0021 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.++.|+|++||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.18 E-value=0.0025 Score=56.14 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.18 E-value=0.0023 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 313
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.15 E-value=0.0027 Score=59.15 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.14 E-value=0.0042 Score=72.11 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+++.|.||+|+|||||+..++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988776543
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.14 E-value=0.0025 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.12 E-value=0.0034 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
No 317
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0023 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 318
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.12 E-value=0.0025 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 319
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.12 E-value=0.0025 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.11 E-value=0.0026 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988744
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.11 E-value=0.0024 Score=54.81 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.10 E-value=0.0026 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 323
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.10 E-value=0.0024 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 324
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.09 E-value=0.0029 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.09 E-value=0.0027 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998643
No 326
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.08 E-value=0.0025 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
No 327
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.06 E-value=0.0026 Score=53.27 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 328
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.05 E-value=0.0029 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 329
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.04 E-value=0.0035 Score=57.57 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 330
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.04 E-value=0.0036 Score=55.07 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987543
No 331
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.03 E-value=0.0028 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.00 E-value=0.0035 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.-+++|+|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 333
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.00 E-value=0.0032 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998654
No 334
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.00 E-value=0.0031 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.99 E-value=0.0032 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 336
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.99 E-value=0.0032 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 337
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.97 E-value=0.0032 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 338
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.97 E-value=0.0034 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.++|+|+.|+|||||++.+.|-...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3789999999999999999987643
No 339
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.96 E-value=0.0037 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
No 340
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.95 E-value=0.0033 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.95 E-value=0.0068 Score=69.49 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+++|+++.|.||+|+|||||...++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877764
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.002 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 343
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.93 E-value=0.0035 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 344
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.90 E-value=0.0037 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 018638 120 VGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~G 139 (352)
++|+|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.89 E-value=0.0042 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 346
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.88 E-value=0.0034 Score=52.40 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 347
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.87 E-value=0.0038 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998643
No 348
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.87 E-value=0.0038 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.86 E-value=0.0045 Score=56.27 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999975
No 350
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0039 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998744
No 351
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.85 E-value=0.0039 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 352
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.84 E-value=0.0023 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 353
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.84 E-value=0.0039 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999998643
No 354
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.82 E-value=0.0045 Score=58.44 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 355
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.80 E-value=0.0055 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 356
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.78 E-value=0.00089 Score=58.37 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=26.6
Q ss_pred eeEeeeEEEeCCc---EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 106 ILRGVSFKIRHGE---AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 106 ~L~~vsl~i~~Ge---~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+++.+.-.+..|. .+.|.||.|+|||||++.++..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333333334444 789999999999999999987553
No 357
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.78 E-value=0.0044 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 358
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.75 E-value=0.0033 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.75 E-value=0.0042 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 360
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.74 E-value=0.005 Score=58.08 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+++|+|+.|+|||||++.|.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.74 E-value=0.0045 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0049 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 363
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.72 E-value=0.0047 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 364
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.70 E-value=0.0044 Score=60.43 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 018638 120 VGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
No 365
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.70 E-value=0.0048 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999744
No 366
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.69 E-value=0.0041 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999988754
No 367
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.69 E-value=0.0049 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 368
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0046 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 369
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.0053 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 370
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.67 E-value=0.0051 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.67 E-value=0.0046 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 372
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.66 E-value=0.0051 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998743
No 373
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.66 E-value=0.0054 Score=56.41 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 374
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.65 E-value=0.0056 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 375
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.65 E-value=0.0052 Score=51.70 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
No 376
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.64 E-value=0.0058 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|-++.|+|+.||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 377
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.0049 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998743
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.63 E-value=0.01 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred eeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 104 KHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 104 ~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
+..++..-+.+. |.-+.|.|+||+|||||...+..
T Consensus 4 ~~~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 345666666654 88899999999999999887764
No 379
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.62 E-value=0.0059 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.62 E-value=0.0053 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.62 E-value=0.006 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 018638 118 EAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 382
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.57 E-value=0.0059 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999863
No 383
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.56 E-value=0.0057 Score=52.96 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 384
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.55 E-value=0.0054 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
No 385
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.54 E-value=0.0055 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999983
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.54 E-value=0.006 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 387
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0055 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998743
No 388
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.53 E-value=0.0062 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 389
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.53 E-value=0.0061 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998743
No 390
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.53 E-value=0.0074 Score=55.87 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
-.++++|.+|+|||||++.|.|-.....|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 4789999999999999999999776555543
No 391
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0063 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0056 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998744
No 393
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.51 E-value=0.0077 Score=54.05 Aligned_cols=29 Identities=38% Similarity=0.437 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
-+|-++.|.|+.||||||+++.|+-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876643
No 394
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.51 E-value=0.0066 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.50 E-value=0.0054 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.50 E-value=0.0047 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 397
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.50 E-value=0.0061 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.48 E-value=0.0064 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.48 E-value=0.008 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+..+.|+|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.48 E-value=0.0071 Score=50.80 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+..+.|.||.|+|||||++.++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999876543
No 401
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0065 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
No 402
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.46 E-value=0.0066 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 403
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.46 E-value=0.0077 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0067 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 405
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.45 E-value=0.0066 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 406
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.45 E-value=0.0059 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 407
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.0017 Score=61.18 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.0
Q ss_pred eeeEeeeEEEeCC--cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 105 HILRGVSFKIRHG--EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 105 ~~L~~vsl~i~~G--e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444445 3489999999999999999998753
No 408
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.44 E-value=0.0061 Score=55.46 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+|-++.|.|+.||||||+++.|+-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.44 E-value=0.0062 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.44 E-value=0.0072 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 411
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.0061 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999988754
No 412
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.44 E-value=0.0076 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999754
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.42 E-value=0.0074 Score=58.31 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
No 414
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.42 E-value=0.0069 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 415
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.41 E-value=0.0074 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 416
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.41 E-value=0.008 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998544
No 417
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.41 E-value=0.0072 Score=60.86 Aligned_cols=43 Identities=19% Similarity=0.461 Sum_probs=33.4
Q ss_pred eeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 105 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 105 ~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+++.+ +.+-+|+.++|+|++|+|||||++.|+.-.....+.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 456655 7788999999999999999999999987554333333
No 418
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.40 E-value=0.0079 Score=51.74 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.40 E-value=0.0072 Score=53.19 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 420
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.38 E-value=0.0074 Score=59.48 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.=.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999763
No 421
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.37 E-value=0.0092 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.35 E-value=0.0085 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 423
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.0072 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999743
No 424
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.33 E-value=0.008 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
No 425
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.28 E-value=0.0083 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999888753
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.0095 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|-+++|.|+.||||||+++.|+-.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.26 E-value=0.0076 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.26 E-value=0.0055 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=9.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.25 E-value=0.0099 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
+|.++.+-|++||||||+++.|+-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.23 E-value=0.0099 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
++.++.|+||.|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466899999999999999999998663
No 431
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.22 E-value=0.0094 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 432
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.18 E-value=0.0089 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.17 E-value=0.0085 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 018638 120 VGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 8899999999999999999743
No 434
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.14 E-value=0.01 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 435
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.009 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.12 E-value=0.0084 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 437
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.10 E-value=0.012 Score=53.18 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+|.++.+-|+.||||||+++.|+-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 4443
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.10 E-value=0.012 Score=56.39 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.09 E-value=0.011 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.08 E-value=0.01 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888653
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.07 E-value=0.013 Score=53.27 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.+|-++.|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999987654
No 442
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.06 E-value=0.011 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.04 E-value=0.016 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHH
Q 018638 114 IRHGEAVGIIGPSGTGKSTILKIIA 138 (352)
Q Consensus 114 i~~Ge~~~IiGpNGsGKSTLlk~l~ 138 (352)
+++|+++.|.|+.|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976543
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.02 E-value=0.0036 Score=67.01 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=35.6
Q ss_pred eeEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECCEeC
Q 018638 110 VSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKR 155 (352)
Q Consensus 110 vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G~~~ 155 (352)
.++.+.+++.+.|+||+|+|||||.++|++.+. .+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 366778999999999999999999999999874 34566666544
No 445
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.00 E-value=0.017 Score=62.03 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC-CceEEEECCEeCCCCCChhhhccceEEEEecCCCCCCCCCHHHHHHhhhh
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAP-DKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY 193 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p-~~G~I~i~G~~~~~~~~~~~~~~~~ig~v~Q~~~l~~~lTV~eni~~~~~ 193 (352)
++-..+.|+||+|+|||+|.+.|+..+.. ..--|.++.................-+|+
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~--------------------- 644 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYV--------------------- 644 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCc---------------------
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCChHHHHHHHHHHHHhccCCCCCCCCcEEEEeCCCCCCCHHHHHHHH
Q 018638 194 ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVE 273 (352)
Q Consensus 194 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqrQRvaIArAL~~~~~~~a~~p~llLLDEPtsgLD~~~~~~l~ 273 (352)
|..+.=.+..++-.. ...+|+|||. ..+++.....++
T Consensus 645 ------------------------------------G~~~~g~l~~~~~~~------~~~vl~lDEi-~~l~~~~~~~Ll 681 (854)
T 1qvr_A 645 ------------------------------------GYEEGGQLTEAVRRR------PYSVILFDEI-EKAHPDVFNILL 681 (854)
T ss_dssp ------------------------------------------CHHHHHHHC------SSEEEEESSG-GGSCHHHHHHHH
T ss_pred ------------------------------------CccccchHHHHHHhC------CCeEEEEecc-cccCHHHHHHHH
Q ss_pred HHHHHHHHcCCCCCCCCCCceEEEEEcC
Q 018638 274 DLIRSVHKKGENGLANPGNIASYVVVTH 301 (352)
Q Consensus 274 ~ll~~l~~~g~~~~~~~~~~~tvIivTH 301 (352)
+.|.+-.-.+..|....-+++.||++|+
T Consensus 682 ~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 682 QILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred HHhccCceECCCCCEeccCCeEEEEecC
No 446
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.012 Score=52.30 Aligned_cols=22 Identities=50% Similarity=0.786 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 447
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.99 E-value=0.013 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
...-+.|.||.|+|||||++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999998743
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.96 E-value=0.0078 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
.++-+++|.|+.||||||+.+.|+-.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
No 449
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.93 E-value=0.0026 Score=57.88 Aligned_cols=32 Identities=41% Similarity=0.678 Sum_probs=25.2
Q ss_pred eEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 107 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 107 L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+.++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444555666 779999999999999999974
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.93 E-value=0.011 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 113 KIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 113 ~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.+++..++.|+||.||||+|..+.|+-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999984
No 451
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.93 E-value=0.0052 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 452
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.89 E-value=0.0053 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=4.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998865
No 453
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.88 E-value=0.01 Score=58.92 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999983
No 454
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.87 E-value=0.012 Score=51.16 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998643
No 455
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.013 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.84 E-value=0.0031 Score=62.80 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCceEEEECC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 152 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~G 152 (352)
.+++|+|++|+||||++..|++.+.....+|.+-.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999998765444555533
No 457
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.80 E-value=0.0082 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 018638 118 EAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~G 139 (352)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999964
No 458
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.79 E-value=0.025 Score=57.14 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHH--HHHHhccC--------CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 018638 224 PSELSGGMKKRVAL--ARSIIFDN--------TKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNI 293 (352)
Q Consensus 224 ~~~LSGGqrQRvaI--ArAL~~~~--------~~~a~~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~ 293 (352)
...+||||+|-.-+ +.|+++-+ .+++..=.+++|||. +-+|....+..++++++|-
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg------------- 442 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD------------- 442 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT-------------
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC-------------
Confidence 47899999995433 33443311 011123368999999 9999999999999998763
Q ss_pred eEEEEEcCCHHHHHhhcCEEEEEe
Q 018638 294 ASYVVVTHQHSTIRRAVDRLIFLY 317 (352)
Q Consensus 294 ~tvIivTHdl~~i~~~aDrv~vL~ 317 (352)
.=+|++|=+ .+..++|.++.+-
T Consensus 443 lQliiatP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 443 MQLLIAAPE--NISPERGTTYKLV 464 (483)
T ss_dssp CEEEEEESS--SCCCSSSEEEECC
T ss_pred CEEEEECcc--hhhhccCceEEEE
Confidence 347788877 6777789988875
No 459
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.75 E-value=0.013 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
No 460
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.70 E-value=0.014 Score=48.39 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+.-+.|.||.|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556889999999999999999876543
No 461
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.70 E-value=0.014 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 462
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.68 E-value=0.012 Score=58.75 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEE
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVY 149 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~ 149 (352)
++.+++++|++|+||||++..|+..+....-+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999987654333343
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.64 E-value=0.014 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 464
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.54 E-value=0.019 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..++.|+||+|||||||...|+--+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998754
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.019 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.44 E-value=0.023 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999997664
No 467
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.36 E-value=0.023 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999853
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.33 E-value=0.016 Score=54.68 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.27 E-value=0.025 Score=49.26 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEEEcCCHH----------HHHhhcCEEEEEeC
Q 018638 251 EPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHS----------TIRRAVDRLIFLYE 318 (352)
Q Consensus 251 ~p~llLLDEPtsgLD~~~~~~l~~ll~~l~~~g~~~~~~~~~~~tvIivTHdl~----------~i~~~aDrv~vL~~ 318 (352)
+++++++||.-- +++. +.+.|+.+..++ ..||++.++.+ .+..+||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~----------~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRG----------IDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTT----------CEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCC----------CCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 378999999753 5543 455666666655 47888777443 24456899987753
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.19 E-value=0.025 Score=52.21 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999888765
No 471
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.19 E-value=0.03 Score=52.25 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCce
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLLAPDKG 146 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G 146 (352)
+-.++|+|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999997644433
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.08 E-value=0.026 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.+++|+||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.02 E-value=0.024 Score=53.67 Aligned_cols=37 Identities=41% Similarity=0.437 Sum_probs=28.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCceEEEEC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIR 151 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I~i~ 151 (352)
.+|..+.|.||.|+|||||++.++..+......+.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3467899999999999999999998765433334433
No 474
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.01 E-value=0.019 Score=55.11 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLA 142 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~ 142 (352)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987653
No 475
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.06 E-value=0.0096 Score=51.51 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 018638 119 AVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~G 139 (352)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
No 476
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.90 E-value=0.018 Score=50.53 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHH-HHcC
Q 018638 120 VGIIGPSGTGKSTILKI-IAGL 140 (352)
Q Consensus 120 ~~IiGpNGsGKSTLlk~-l~Gl 140 (352)
++|+|+.|+|||||++. +.|-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
No 477
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.86 E-value=0.016 Score=57.82 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=29.4
Q ss_pred eeeEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCceEE
Q 018638 109 GVSFKIRHGEA--VGIIGPSGTGKSTILKIIAGLLAPDKGEV 148 (352)
Q Consensus 109 ~vsl~i~~Ge~--~~IiGpNGsGKSTLlk~l~Gl~~p~~G~I 148 (352)
.+.-.+..|.+ +.|.||+|+|||||.++|+......-..+
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 34444445554 88999999999999999999876543333
No 478
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.84 E-value=0.027 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..++|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
No 479
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.80 E-value=0.025 Score=55.83 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 480
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.80 E-value=0.031 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999875
No 481
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.66 E-value=0.032 Score=51.13 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||.|+|||||++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999866
No 482
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.66 E-value=0.041 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998775
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.64 E-value=0.047 Score=49.49 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLLAP 143 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~~p 143 (352)
.+.-+.|.||.|+|||+|.+.|+.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 3567889999999999999999987643
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.58 E-value=0.034 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.58 E-value=0.042 Score=52.79 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 112 FKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 112 l~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688899999999999999999999985
No 486
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.55 E-value=0.023 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.53 E-value=0.038 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.51 E-value=0.035 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999876
No 489
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.51 E-value=0.066 Score=51.03 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCeeeeEeeeEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 018638 102 GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAG 139 (352)
Q Consensus 102 ~~~~~L~~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~G 139 (352)
.....+++.-+.+. |.-+.|.|+||+|||||.-.+..
T Consensus 133 a~~~~~H~~~v~~~-g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEVF-GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEET-TEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 44567888766664 88899999999999999877653
No 490
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.51 E-value=0.043 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 117 GEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 117 Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.50 E-value=0.0062 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999988744
No 492
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.44 E-value=0.034 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
++..++++|.+|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.43 E-value=0.043 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
-.+||+|+.||||||+.+.|+--
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 494
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.39 E-value=0.045 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.|..+.|.||.|+|||||++.++.-.
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999998643
No 495
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.31 E-value=0.043 Score=52.78 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=25.1
Q ss_pred eeeEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 018638 109 GVSFKIRHGEAVGIIGPSGTGKSTILKIIAGL 140 (352)
Q Consensus 109 ~vsl~i~~Ge~~~IiGpNGsGKSTLlk~l~Gl 140 (352)
.+.++++---.++|+|..+||||||++.|++-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554445899999999999999999874
No 496
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.31 E-value=0.036 Score=56.67 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 018638 119 AVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 119 ~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
.++|+|..|+|||||++.|.|-.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.30 E-value=0.044 Score=57.07 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+|.++.|+|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.26 E-value=0.043 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 018638 118 EAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 118 e~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
..+.|.||.|+|||+|.+.|+.-+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999765
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.22 E-value=0.049 Score=51.25 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 116 HGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 116 ~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
+..-+.|.||.|+|||||++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34458899999999999999998753
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.21 E-value=0.048 Score=52.27 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 018638 115 RHGEAVGIIGPSGTGKSTILKIIAGLL 141 (352)
Q Consensus 115 ~~Ge~~~IiGpNGsGKSTLlk~l~Gl~ 141 (352)
....-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
Done!