Query 018641
Match_columns 352
No_of_seqs 284 out of 766
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 2.2E-16 7.4E-21 120.7 5.1 54 222-278 7-60 (63)
2 1gnf_A Transcription factor GA 99.6 3.1E-16 1.1E-20 113.1 4.5 43 222-267 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.6 4E-16 1.4E-20 111.0 3.7 41 223-266 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.6 8.6E-16 3E-20 118.4 4.7 52 222-276 9-60 (66)
5 2kae_A GATA-type transcription 99.4 3.1E-14 1.1E-18 111.2 2.5 46 222-269 8-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.4 1.3E-13 4.4E-18 116.4 4.6 53 223-278 60-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 1E-11 3.5E-16 104.8 5.4 48 222-272 5-52 (115)
8 3ogl_Q JAZ1 incomplete degron 96.2 0.0021 7.1E-08 39.1 2.0 18 151-168 4-21 (21)
9 3ogk_Q JAZ1 incomplete degron 96.0 0.0018 6.3E-08 39.9 1.1 19 153-171 1-19 (22)
10 1pft_A TFIIB, PFTFIIBN; N-term 43.1 3.4 0.00012 28.8 -0.9 32 223-259 6-37 (50)
11 1dl6_A Transcription factor II 40.5 8.7 0.0003 28.0 0.9 32 223-259 12-43 (58)
12 2yrk_A Zinc finger homeobox pr 39.4 5.2 0.00018 29.6 -0.4 20 240-259 7-26 (55)
13 1ovx_A ATP-dependent CLP prote 35.2 18 0.00063 27.6 2.0 33 223-257 19-51 (67)
14 2ds5_A CLPX, ATP-dependent CLP 34.6 20 0.00069 25.8 2.1 32 223-256 12-43 (51)
15 2pk2_A Cyclin-T1, protein TAT; 28.7 12 0.00041 36.2 0.0 17 150-166 234-250 (358)
16 2j9u_B VPS36, vacuolar protein 27.6 12 0.0004 29.4 -0.2 34 221-255 16-49 (76)
17 3cw2_K Translation initiation 26.7 24 0.00081 30.3 1.5 31 223-256 104-134 (139)
18 2yrc_A Protein transport prote 22.7 22 0.00076 26.2 0.5 32 222-255 9-42 (59)
19 3cng_A Nudix hydrolase; struct 22.5 26 0.00087 29.7 0.9 30 223-254 4-33 (189)
20 3h0g_L DNA-directed RNA polyme 21.6 21 0.00073 26.8 0.2 37 218-261 17-53 (63)
21 2d74_B Translation initiation 21.4 27 0.00091 30.3 0.8 29 224-255 106-134 (148)
22 2lvu_A Zinc finger and BTB dom 26.9 20 0.00068 19.5 0.0 17 247-263 3-19 (26)
23 1nee_A EIF-2-beta, probable tr 21.3 25 0.00085 30.1 0.6 28 224-254 104-131 (138)
24 1pcx_A Protein transport prote 21.3 25 0.00084 37.8 0.7 32 222-255 112-143 (810)
25 2ctu_A Zinc finger protein 483 21.2 30 0.001 23.5 0.9 39 222-263 18-56 (73)
26 1m2v_B SEC24, protein transpor 20.7 26 0.00087 38.4 0.7 32 222-255 228-259 (926)
27 2owa_A Arfgap-like finger doma 20.2 70 0.0024 27.2 3.2 37 222-262 36-72 (138)
28 3efo_B SEC24 related gene fami 20.2 23 0.0008 37.7 0.3 32 222-255 98-129 (770)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.62 E-value=2.2e-16 Score=120.75 Aligned_cols=54 Identities=26% Similarity=0.522 Sum_probs=46.5
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCcCCCCCcccccC
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k~~~~~~~~~~~ 278 (352)
...|++|++ +.||+||+||+|+ +|||||||+|++++..|++.+.+..|+.++..
T Consensus 7 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 7 GTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 457999999 5799999999997 99999999999999999999887777665543
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.61 E-value=3.1e-16 Score=113.07 Aligned_cols=43 Identities=44% Similarity=0.845 Sum_probs=39.3
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCc
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSK 267 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k 267 (352)
...|++|++ +.||+||+||.|+ +|||||||||++++++|+++|
T Consensus 4 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 357999999 5799999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=4e-16 Score=111.03 Aligned_cols=41 Identities=46% Similarity=0.911 Sum_probs=37.9
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 266 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~ 266 (352)
..|++|++ +.||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 46999999 5799999999997 99999999999999999875
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.58 E-value=8.6e-16 Score=118.39 Aligned_cols=52 Identities=37% Similarity=0.684 Sum_probs=45.2
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCcCCCCCcccc
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQ 276 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k~~~~~~~~~ 276 (352)
...|++|++ +.||+||+||.|. +|||||||+|++++++|++++++..|..+.
T Consensus 9 ~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 9 PTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 357999999 5799999999996 999999999999999999998876555443
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.43 E-value=3.1e-14 Score=111.15 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=38.7
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCcCC
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGG 269 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k~~ 269 (352)
...|++|++ +.||+||+||.+..+|||||||+|+++++.|++....
T Consensus 8 ~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 8 SFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 357999999 5799999955444499999999999999999887653
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.40 E-value=1.3e-13 Score=116.36 Aligned_cols=53 Identities=26% Similarity=0.555 Sum_probs=46.3
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCcCCCCCcccccC
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSMDQLE 278 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k~~~~~~~~~~~ 278 (352)
..|++|++ +.||+||+||.| ++|||||||||++++..|++++++..|..+...
T Consensus 60 ~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 60 TSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred ccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 57999999 569999999999 899999999999999999999988777665443
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.20 E-value=1e-11 Score=104.77 Aligned_cols=48 Identities=46% Similarity=0.792 Sum_probs=41.6
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCCcCCCCC
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSL 272 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~k~~~~~ 272 (352)
.+.|.+|++ +.||+||+||.| .+|||||||+|+.++..|++.+.++..
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~ 52 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRL 52 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhcccccccccccccc
Confidence 457999999 579999999999 799999999999999999987765433
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=96.24 E-value=0.0021 Score=39.14 Aligned_cols=18 Identities=61% Similarity=0.706 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhccc.....
Q 018641 151 SRRIASLVRFREKRKERC..... 168 (352)
Q Consensus 151 s~R~asL~RfREKRKeR~..... 168 (352)
..|.+||+||.||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 378999999999999974
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0018 Score=39.85 Aligned_cols=19 Identities=63% Similarity=0.737 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcccccc
Q 018641 153 RIASLVRFREKRKERCFDK 171 (352)
Q Consensus 153 R~asL~RfREKRKeR~f~K 171 (352)
|.+||+||.||||+|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999987664
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.14 E-value=3.4 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.585 Sum_probs=21.1
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHHHhc
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~ 259 (352)
..|-.|+. +++..+--.| ...|..||+.|..+
T Consensus 6 ~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 6 KVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred EeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 46888876 3444444445 68888888877543
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.53 E-value=8.7 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=24.0
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHHHhc
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~ 259 (352)
..|..|+. ++...+--.| ...|..||+-+..+
T Consensus 12 ~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 12 VTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 46999986 4466666666 79999999988654
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=39.38 E-value=5.2 Score=29.60 Aligned_cols=20 Identities=25% Similarity=0.816 Sum_probs=14.0
Q ss_pred cCCCCCcccchHHHHHHHhc
Q 018641 240 RGPAGPRTLCNACGLMWANK 259 (352)
Q Consensus 240 ~GP~G~~~LCNACGl~~~~~ 259 (352)
.+|.||++-|.-||..|--+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 46777777777777776544
No 13
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=35.16 E-value=18 Score=27.56 Aligned_cols=33 Identities=24% Similarity=0.621 Sum_probs=21.9
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHHH
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~ 257 (352)
.+|+.||.+...+...=.|| | -..|+.|-....
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c~ 51 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLCN 51 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHHH
Confidence 47999998643344444455 3 489999975543
No 14
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=34.62 E-value=20 Score=25.78 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=21.1
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHH
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~ 256 (352)
.+|+.||.+...+...=.|| | -..|+.|-..-
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~ 43 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 43 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHHH
Confidence 47999998643344444455 3 48999996543
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.68 E-value=12 Score=36.15 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHhhhc
Q 018641 150 LSRRIASLVRFREKRKE 166 (352)
Q Consensus 150 ls~R~asL~RfREKRKe 166 (352)
+.....-|..+.++...
T Consensus 234 l~~i~~~il~~y~~~~~ 250 (358)
T 2pk2_A 234 LDELTHEFLQILEKTPN 250 (358)
T ss_dssp HHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 44555556666655544
No 16
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=27.63 E-value=12 Score=29.39 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=25.4
Q ss_pred cccccccccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 221 VVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 221 ~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
..|.|-.|... .-++.+.+--..+..-|-+||..
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 47999999875 45677765444667789999974
No 17
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=26.71 E-value=24 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=19.0
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHHHH
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~ 256 (352)
..|..|+-+. |-+-+++-. --.-|+|||-.-
T Consensus 104 VlC~~C~sPd--T~l~k~~r~-~~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKKS-WYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCST-TTSSCCC-----
T ss_pred eECCCCCCcC--cEEEEeCCe-EEEEecCCCCCC
Confidence 4599999975 778776522 247899999653
No 18
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.71 E-value=22 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccccc--ccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 222 VRRCQH--CGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 222 ~~~C~~--Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
..+|.. |++ -.-|.|+-...|.+..||-|+..
T Consensus 9 pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 9 PVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred CcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 468998 988 56999999888989999999854
No 19
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.46 E-value=26 Score=29.70 Aligned_cols=30 Identities=27% Similarity=0.645 Sum_probs=23.3
Q ss_pred cccccccCCCCCCCccccCCCCCcccchHHHH
Q 018641 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (352)
Q Consensus 223 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 254 (352)
+.|..||.. .+....+|..+.+..|-.||.
T Consensus 4 ~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 4 KFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred ccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 579999984 455556777777889999994
No 20
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.61 E-value=21 Score=26.82 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=23.2
Q ss_pred CcccccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCC
Q 018641 218 PETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGT 261 (352)
Q Consensus 218 ~e~~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~ 261 (352)
+....-.|..|+... ... .+...-|..||-+.-.|.+
T Consensus 17 ~~~v~Y~C~~Cg~~~--~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 17 PATMIYLCADCGARN--TIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp --CCCCBCSSSCCBC--CCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred CCCeEEECCCCCCee--ecC-----CCCceECCCCCcEEEEEec
Confidence 334467899999842 222 2346889999987665543
No 21
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.43 E-value=27 Score=30.30 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=20.6
Q ss_pred ccccccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 224 ~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
.|..|+-+. |-+-+++- ---.-|+|||-.
T Consensus 106 lC~~C~sPd--T~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 106 ICPVCGSPD--TKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SCSSSCCTT--CCCCBSSS-SBCCCCSSSCCC
T ss_pred ECCCCCCcC--cEEEEeCC-EEEEEecCCCCC
Confidence 499999975 77777652 224689999853
No 22
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.95 E-value=20 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.4
Q ss_pred ccchHHHHHHHhcCCCC
Q 018641 247 TLCNACGLMWANKGTLR 263 (352)
Q Consensus 247 ~LCNACGl~~~~~~~~r 263 (352)
..|..||..|.....|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46889999888765543
No 23
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=21.28 E-value=25 Score=30.08 Aligned_cols=28 Identities=32% Similarity=0.756 Sum_probs=20.3
Q ss_pred ccccccCCCCCCCccccCCCCCcccchHHHH
Q 018641 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254 (352)
Q Consensus 224 ~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 254 (352)
.|..|+-+. |-+-+++-. --.-|+|||-
T Consensus 104 lC~~C~sPd--T~l~k~~r~-~~l~C~ACGa 131 (138)
T 1nee_A 104 ICHECNRPD--TRIIREGRI-SLLKCEACGA 131 (138)
T ss_dssp HHTCCSSCS--SCCEEETTT-TEEECSTTSC
T ss_pred ECCCCCCcC--cEEEEcCCe-EEEEccCCCC
Confidence 599999975 777776522 2468999985
No 24
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=21.26 E-value=25 Score=37.76 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.9
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
..+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 112 pvRC~~Cra--yiNPf~~~~~~g~~W~C~~C~~~ 143 (810)
T 1pcx_A 112 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 143 (810)
T ss_dssp CCBCTTTCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCc
Confidence 468999998 57999998888999999999964
No 25
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=30 Score=23.52 Aligned_cols=39 Identities=18% Similarity=0.510 Sum_probs=25.9
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCCC
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLR 263 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r 263 (352)
...|..|+..-.....++. .....|..||..|.....|+
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~ 56 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALN 56 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHH
Confidence 4579999764323333333 44689999999987765554
No 26
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=20.66 E-value=26 Score=38.39 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=27.9
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
..+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 228 pvRC~rCrA--YiNPf~~~~~~g~~W~CnfC~~~ 259 (926)
T 1m2v_B 228 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 259 (926)
T ss_dssp CCBCSSSCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCC
Confidence 468999998 57999998888999999999864
No 27
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=20.23 E-value=70 Score=27.24 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.0
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 262 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 262 (352)
...|..|+.. -|.|=.-..| -.+|-.|.-..+.-|.+
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4579999985 6999999999 79999999888876654
No 28
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=20.22 E-value=23 Score=37.72 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=28.1
Q ss_pred ccccccccCCCCCCCccccCCCCCcccchHHHHH
Q 018641 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLM 255 (352)
Q Consensus 222 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 255 (352)
..+|..|++ ..-|.++-...|.+..||-|+..
T Consensus 98 pvRC~rCra--yiNPf~~f~~~g~~w~Cn~C~~~ 129 (770)
T 3efo_B 98 PVRCNRCKA--YMCPFMQFIEGGRRYQCGFCNCV 129 (770)
T ss_dssp SCBCTTTCC--BSCTTCEEEGGGTEEECTTTCCE
T ss_pred CCccCCCCC--CcCCceEEecCCCEEEecccccc
Confidence 568999999 57999998888999999999865
Done!