BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018642
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 174/340 (51%), Gaps = 30/340 (8%)
Query: 1 MKLNWGSMSRYFLYEEDQTL-DLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ D+ + +L++ +IL+HE K+ + S + ++PLL+V
Sbjct: 193 MQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLE--SVIQSQKPLLIV 250
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N+ K+ VK P F + KA +++DIAI
Sbjct: 251 AEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKA----------------MLQDIAI 294
Query: 120 LTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG+V+ S L + L MLG KKV + + I G+G + IE R Q+
Sbjct: 295 LTGGQVI---SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQ 351
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA+++VGG T E ++EGI
Sbjct: 352 QIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGI 411
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVE-KLLG 292
+ GGGVAL+ ++ LE L N + G+ +++ A++ P+ IA AG +VV K+
Sbjct: 412 VVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRE 471
Query: 293 QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ ++ +EY D K ++DP K++R L+DA S
Sbjct: 472 SSDKAFGFNAQTEEYGDMFKFGVIDPA-KVVRTALEDAAS 510
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 172/341 (50%), Gaps = 32/341 (9%)
Query: 2 KLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVA 60
+ + G +S YF+ E L++ FILI E K+ + + ++ + +PLL++A
Sbjct: 192 QFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVA--QTGKPLLIIA 249
Query: 61 NDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAIL 120
DVE E +V N+ + VK P F + K +++DIA +
Sbjct: 250 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKE----------------MLKDIAAV 293
Query: 121 TGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDA 174
TGG V+ S L L MLG ++V++T +E I GG G + IE R +
Sbjct: 294 TGGTVI---SEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKE 350
Query: 175 IEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGII 234
+E + S+Y + L+ERL L+ VA+++VG AT E +EEGI+
Sbjct: 351 LETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIV 410
Query: 235 PGGGVALLHASEELEKL-PAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSV-VEKLLG 292
PGGGV LL A +E+L + E G K+++ A++ P IA AG++ SV V+++L
Sbjct: 411 PGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILA 470
Query: 293 Q-ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ +NP ++ E+VD V++ IVDP K+ R+ L +A S
Sbjct: 471 ETKNPRYGFNAATGEFVDMVEAGIVDPA-KVTRSALQNAAS 510
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNKDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 193 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 250
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 251 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 294
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 295 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 351
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 352 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGV 411
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 412 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 471
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 472 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 509
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 166/339 (48%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 193 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 250
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 251 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 294
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 295 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 351
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 352 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 411
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 412 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEKPSVVANTVKG 471
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 472 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 509
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 166/339 (48%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 249
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E V N K+ VK P F + KA +++DIA
Sbjct: 250 AEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 293
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 294 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 350
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 351 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 410
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 411 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 470
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 471 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 508
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 166/339 (48%), Gaps = 29/339 (8%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 193 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 250
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E V N K+ VK P F + KA +++DIA
Sbjct: 251 AEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 294
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 295 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 351
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGI 233
IE +TSDY+ + L+ER+ L+ VA++KVG AT E +EEG+
Sbjct: 352 QIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGV 411
Query: 234 IPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQ 293
+ GGGVAL+ + +L L N + +G+K+ A++ PL I G + SVV +
Sbjct: 412 VAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG 471
Query: 294 ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS 332
+ + Y+ +EY + + I+DP K+ R+ L A S
Sbjct: 472 GDGNYGYNAATEEYGNMIDMGILDPT-KVTRSALQYAAS 509
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 42/366 (11%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKN----IFAQAIGAISCNEVKRP 55
M+ + G +S YF+ + E Q L++P+IL+ +K+ + + IGA +P
Sbjct: 191 MRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGA------GKP 244
Query: 56 LLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMR 115
LL++A DVE E +V N+ K VK P F + KA +++
Sbjct: 245 LLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKA----------------MLQ 288
Query: 116 DIAILTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCE 169
D+AILTGG+V+ S + + L +LG +KV VT +E I G+G+ I R
Sbjct: 289 DMAILTGGQVI---SEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVA 345
Query: 170 QLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXM 229
Q+ IE S SDY+ + L+ERL L+ VA++K G AT E +
Sbjct: 346 QIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAV 405
Query: 230 EEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEK 289
EEGI+ GGGV LL A+ L++L + E G +++ A++ PL IA +G + VV +
Sbjct: 406 EEGIVAGGGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAE 464
Query: 290 LLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS----YFVSRWCSTEKLQ 345
+ + Y D + + + D P+K+ R+ L +A S + + +K +
Sbjct: 465 KVRNLPAGHGLNAQTGVYEDLLAAGVAD-PVKVTRSALQNAASIAGLFLTTEAVVADKPE 523
Query: 346 RQKGRV 351
++K V
Sbjct: 524 KEKASV 529
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 42/366 (11%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKN----IFAQAIGAISCNEVKRP 55
M+ + G +S YF+ + E Q L++P+IL+ +K+ + + IGA +P
Sbjct: 149 MRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGA------GKP 202
Query: 56 LLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMR 115
LL++A DVE E +V N+ K VK P F + KA +++
Sbjct: 203 LLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKA----------------MLQ 246
Query: 116 DIAILTGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCE 169
D+AILTGG+V+ S + + L +LG +KV VT +E I G+G+ I R
Sbjct: 247 DMAILTGGQVI---SEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVA 303
Query: 170 QLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXM 229
Q+ IE S SDY+ + L+ERL L+ VA++K G AT E +
Sbjct: 304 QIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAV 363
Query: 230 EEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEK 289
EEGI+ GGGV LL A+ L++L + E G +++ A++ PL IA +G + VV +
Sbjct: 364 EEGIVAGGGVTLLQAAPTLDELK-LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAE 422
Query: 290 LLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVS----YFVSRWCSTEKLQ 345
+ + Y D + + + D P+K+ R+ L +A S + + +K +
Sbjct: 423 KVRNLPAGHGLNAQTGVYEDLLAAGVAD-PVKVTRSALQNAASIAGLFLTTEAVVADKPE 481
Query: 346 RQKGRV 351
++K V
Sbjct: 482 KEKASV 487
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 28/208 (13%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 6 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 63
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 64 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 107
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 108 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 164
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAIL 201
IE +TSDY+ + L+ER+ L+ VA++
Sbjct: 165 QIEEATSDYDREKLQERVAKLAGGVAVI 192
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 28/205 (13%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 10 MQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVA--KAGKPLLII 67
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 111
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S L + L LG K+V +T + I G G + I+ R Q+
Sbjct: 112 LTGGTVI---SEELGMKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQ 168
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRV 198
IE +TSDY+ + L+ER+ L+ V
Sbjct: 169 QIEEATSDYDREKLQERVAKLAGGV 193
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 28/205 (13%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 10 MQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVA--KAGKPLLII 67
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 111
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S L + L LG K+V +T + I G G + I+ R Q+
Sbjct: 112 LTGGTVI---SEELGMKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQ 168
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRV 198
IE +TSDY+ + L+ER+ L+ V
Sbjct: 169 QIEEATSDYDREKLQERVAKLAGGV 193
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 28/205 (13%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 20 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 77
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 78 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKA----------------MLQDIAT 121
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LTGG V+ S + + L LG K+V + + I G G + I+ R Q+
Sbjct: 122 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQ 178
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRV 198
IE +TSDY+ + L+ER+ L+ V
Sbjct: 179 QIEEATSDYDREKLQERVAKLAGGV 203
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 22/205 (10%)
Query: 1 MKLNWGSMSRYFLYEED-QTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
+ + G +S YF+ + D Q L++ IL+H++KI + ++ +PLL+V
Sbjct: 8 IGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGT--GKPLLIV 65
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K VK P F + KA + D+A+
Sbjct: 66 AEDVEGEALATLVVNAIRKTLKAVAVKGPYFGD----------------RRKAFLEDLAV 109
Query: 120 LTGGRVVTAASNSLYIPL---MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIE 176
+TGG+VV + + + +LGS ++V V+ ++ +I G G + +R + L I+
Sbjct: 110 VTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEID 169
Query: 177 MSTSDYEIKLLEERLQMLSSRVAIL 201
S SD++ + L ERL L+ VA++
Sbjct: 170 KSDSDWDREKLGERLAKLAGGVAVI 194
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 28/207 (13%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E +++L+NP+IL+ + KI + + ++ + +PL+++
Sbjct: 15 MQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVA--KASKPLVII 72
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA +++DIA
Sbjct: 73 AEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKA----------------MLQDIAT 116
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSD 173
LT G V+ S + + L LG K+V + + I G G + I R Q+
Sbjct: 117 LTNGTVI---SEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQ 173
Query: 174 AIEMSTSDYEIKLLEERLQMLSSRVAI 200
IE STSDY+ + L+ER+ L+ V +
Sbjct: 174 QIEESTSDYDREKLQERVAKLAGGVKL 200
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 28/174 (16%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 3 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 60
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA+++DIA
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR----------------KAMLQDIAT 104
Query: 120 LTGGRVVTAASNSLYIPLM------LGSCKKVKVTNNEMIIHGGSGNQVYIEDR 167
LTGG V+ S + + L LG K+V + + I G G + I+ R
Sbjct: 105 LTGGTVI---SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVV 59
M+ + G +S YF+ + E ++L++PFIL+ + KI + + A++ + +PLL++
Sbjct: 3 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA--KAGKPLLII 60
Query: 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119
A DVE E +V N K+ VK P F + KA+++DIA
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR----------------KAMLQDIAT 104
Query: 120 LTGGRVVT 127
LTGG V++
Sbjct: 105 LTGGTVIS 112
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Query: 2 KLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVA 60
+ + G +S YF+ E L++ FILI E K+ + + ++ + +PLL++A
Sbjct: 3 QFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVA--QTGKPLLIIA 60
Query: 61 NDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAIL 120
DVE E +V N+ + VK P F + K +++DIA +
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR----------------KEMLKDIAAV 104
Query: 121 TGGRVVTAASNSLYIPL------MLGSCKKVKVTNNEMIIHGG 157
TGG V+ S L L MLG ++V++T +E I GG
Sbjct: 105 TGGTVI---SEELGFKLENATLSMLGRAERVRITKDETTIVGG 144
>pdb|2O19|A Chain A, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O19|B Chain B, Structure Of E. Coli Topoisomersae Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 5.5
pdb|2O54|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O54|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol At Ph 7.0
pdb|2O59|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O59|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glycerol Ph 8.0
pdb|2O5C|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5C|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 5.5
pdb|2O5E|A Chain A, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
pdb|2O5E|B Chain B, Structure Of E. Coli Topoisomerase Iii In Complex With An
8- Base Single Stranded Oligonucleotide. Frozen In
Glucose Ph 7.0
Length = 659
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 34 ILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEES 93
IL +N Q G +S V+ P+L + +EE+ FV + F + K V P +E
Sbjct: 182 ILGRNAGYQ--GVLSVGRVQTPVLGLVVRRDEEIENFVAKD--FFEVKAHIVTPA--DER 235
Query: 94 WKAVY--GENCELVYEENCKAIMRDIA 118
+ A++ E CE +E + + R +A
Sbjct: 236 FTAIWQPSEACEPYQDEEGRLLHRPLA 262
>pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii
Length = 653
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 34 ILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEES 93
IL +N Q G +S V+ P+L + +EE+ FV + F + K V P +E
Sbjct: 182 ILGRNAGYQ--GVLSVGRVQTPVLGLVVRRDEEIENFVAKD--FFEVKAHIVTPA--DER 235
Query: 94 WKAVY--GENCELVYEENCKAIMRDIA 118
+ A++ E CE +E + + R +A
Sbjct: 236 FTAIWQPSEACEPYQDEEGRLLHRPLA 262
>pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With
An 8-Base Single-Stranded Dna Oligonucleotide
Length = 659
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 34 ILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEES 93
IL +N Q G +S V+ P+L + +EE+ FV + F + K V P +E
Sbjct: 182 ILGRNAGYQ--GVLSVGRVQTPVLGLVVRRDEEIENFVAKD--FFEVKAHIVTPA--DER 235
Query: 94 WKAVY--GENCELVYEENCKAIMRDIA 118
+ A++ E CE +E + + R +A
Sbjct: 236 FTAIWQPSEACEPYQDEEGRLLHRPLA 262
>pdb|4A8E|A Chain A, The Structure Of A Dimeric Xer Recombinase From Archaea
Length = 292
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 257 GEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQEN 295
G K GV+L H ++ T G + ++++LLG N
Sbjct: 216 GRKAGVELTPHQLRHSFATHMLERGIDIRIIQELLGHSN 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,588,172
Number of Sequences: 62578
Number of extensions: 369106
Number of successful extensions: 960
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 39
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)