Query 018642
Match_columns 352
No_of_seqs 162 out of 1493
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 7.8E-74 1.7E-78 591.7 35.9 328 1-347 193-525 (545)
2 PRK14104 chaperonin GroEL; Pro 100.0 6.1E-73 1.3E-77 584.5 35.3 328 1-347 193-525 (546)
3 PRK00013 groEL chaperonin GroE 100.0 1E-72 2.3E-77 582.3 36.2 329 1-348 192-525 (542)
4 PTZ00114 Heat shock protein 60 100.0 9.7E-73 2.1E-77 584.4 36.0 329 1-348 204-541 (555)
5 PRK12849 groEL chaperonin GroE 100.0 3.5E-72 7.6E-77 578.4 36.2 329 1-349 192-525 (542)
6 PRK12851 groEL chaperonin GroE 100.0 7.8E-72 1.7E-76 575.9 35.4 327 1-347 193-524 (541)
7 PRK12850 groEL chaperonin GroE 100.0 9.5E-72 2.1E-76 575.6 36.0 328 1-348 193-525 (544)
8 TIGR02348 GroEL chaperonin Gro 100.0 1.2E-71 2.5E-76 573.1 35.7 327 1-347 191-522 (524)
9 PLN03167 Chaperonin-60 beta su 100.0 1E-71 2.2E-76 579.7 33.5 329 1-348 247-582 (600)
10 CHL00093 groEL chaperonin GroE 100.0 3.6E-71 7.8E-76 570.0 34.7 327 1-348 192-526 (529)
11 cd03344 GroEL GroEL_like type 100.0 5.6E-71 1.2E-75 567.4 35.0 324 1-344 190-518 (520)
12 KOG0356 Mitochondrial chaperon 100.0 8E-72 1.7E-76 554.4 24.0 321 1-344 206-533 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 9.2E-60 2E-64 482.4 20.5 308 1-348 199-515 (524)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7.4E-54 1.6E-58 437.5 24.4 268 2-347 207-483 (484)
15 PTZ00212 T-complex protein 1 s 100.0 7.9E-53 1.7E-57 434.5 27.2 281 2-347 210-526 (533)
16 cd03343 cpn60 cpn60 chaperonin 100.0 1.8E-52 3.9E-57 430.5 28.5 274 2-346 212-516 (517)
17 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.3E-52 4.9E-57 429.8 28.6 281 2-347 198-514 (517)
18 cd03339 TCP1_epsilon TCP-1 (CT 100.0 7.6E-53 1.6E-57 434.1 25.1 270 2-344 220-525 (526)
19 TIGR02339 thermosome_arch ther 100.0 3E-52 6.6E-57 429.0 28.8 276 3-345 210-518 (519)
20 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2E-52 4.4E-57 431.0 27.2 280 3-347 202-526 (527)
21 TIGR02347 chap_CCT_zeta T-comp 100.0 3.4E-52 7.4E-57 429.4 26.6 273 2-347 211-526 (531)
22 TIGR02345 chap_CCT_eta T-compl 100.0 3.5E-52 7.5E-57 428.9 25.6 292 1-347 211-520 (522)
23 TIGR02341 chap_CCT_beta T-comp 100.0 1E-51 2.2E-56 425.1 28.6 280 2-348 199-516 (519)
24 TIGR02343 chap_CCT_epsi T-comp 100.0 5.9E-52 1.3E-56 427.9 26.0 272 1-345 223-530 (532)
25 TIGR02342 chap_CCT_delta T-com 100.0 7.9E-52 1.7E-56 425.7 25.9 283 3-346 200-516 (517)
26 TIGR02346 chap_CCT_theta T-com 100.0 6.9E-52 1.5E-56 427.3 23.1 274 7-347 234-520 (531)
27 cd03338 TCP1_delta TCP-1 (CTT 100.0 1E-51 2.2E-56 424.7 23.5 247 38-345 259-514 (515)
28 TIGR02344 chap_CCT_gamma T-com 100.0 5.1E-51 1.1E-55 420.5 27.7 281 3-348 210-523 (525)
29 TIGR02340 chap_CCT_alpha T-com 100.0 7.8E-51 1.7E-55 420.0 27.1 279 4-347 207-530 (536)
30 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.3E-50 5E-55 415.4 27.3 277 1-347 210-520 (522)
31 cd03341 TCP1_theta TCP-1 (CTT 100.0 3E-50 6.5E-55 409.9 25.4 262 3-346 199-471 (472)
32 cd03337 TCP1_gamma TCP-1 (CTT 100.0 2.2E-49 4.8E-54 404.3 24.4 259 2-344 209-478 (480)
33 cd00309 chaperonin_type_I_II c 100.0 8.8E-48 1.9E-52 390.8 27.6 252 2-344 202-463 (464)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-46 2.2E-51 382.9 24.6 278 3-347 174-484 (485)
35 KOG0361 Chaperonin complex com 100.0 4.9E-45 1.1E-49 349.9 17.1 266 16-348 226-524 (543)
36 KOG0357 Chaperonin complex com 100.0 3.3E-44 7.1E-49 339.3 13.0 247 36-349 140-398 (400)
37 KOG0363 Chaperonin complex com 100.0 7E-41 1.5E-45 319.6 19.2 278 3-348 209-520 (527)
38 KOG0358 Chaperonin complex com 100.0 1.9E-41 4E-46 324.8 14.0 245 40-345 278-532 (534)
39 KOG0359 Chaperonin complex com 100.0 2.5E-38 5.4E-43 307.2 21.1 303 3-348 203-516 (520)
40 KOG0360 Chaperonin complex com 100.0 1.9E-38 4.2E-43 310.7 16.0 299 4-350 214-539 (545)
41 KOG0364 Chaperonin complex com 100.0 1.3E-38 2.9E-43 309.5 12.2 281 5-351 212-525 (527)
42 KOG0362 Chaperonin complex com 100.0 1.3E-33 2.9E-38 278.2 19.6 248 34-348 254-522 (537)
43 cd03334 Fab1_TCP TCP-1 like do 99.9 1.8E-21 4E-26 184.5 14.5 165 3-232 65-254 (261)
44 cd03333 chaperonin_like chaper 99.8 1.7E-20 3.8E-25 171.5 15.5 145 4-231 62-209 (209)
45 KOG0230 Phosphatidylinositol-4 97.9 3.4E-05 7.4E-10 86.2 8.3 174 3-242 379-578 (1598)
46 COG0459 GroL Chaperonin GroEL 68.7 4.8 0.0001 42.3 3.5 68 18-92 226-304 (524)
47 PF01256 Carb_kinase: Carbohyd 61.8 16 0.00034 34.5 5.2 83 34-128 77-159 (242)
48 smart00574 POX domain associat 56.9 35 0.00076 29.6 6.0 57 180-249 68-125 (140)
49 PRK13600 putative ribosomal pr 52.3 39 0.00084 26.7 5.2 44 42-87 20-63 (84)
50 KOG3954 Electron transfer flav 51.9 68 0.0015 31.0 7.6 177 27-236 54-262 (336)
51 TIGR02343 chap_CCT_epsi T-comp 50.2 16 0.00034 38.4 3.5 38 83-123 294-331 (532)
52 TIGR02345 chap_CCT_eta T-compl 45.8 1.1E+02 0.0024 32.0 9.0 38 49-92 278-315 (522)
53 cd03339 TCP1_epsilon TCP-1 (CT 45.3 22 0.00048 37.1 3.7 24 83-106 290-313 (526)
54 PF07526 POX: Associated with 40.8 73 0.0016 27.6 5.6 58 180-250 68-126 (140)
55 PLN02512 acetylglutamate kinas 37.1 86 0.0019 30.5 6.2 49 190-240 41-91 (309)
56 TIGR02346 chap_CCT_theta T-com 32.7 73 0.0016 33.5 5.2 96 3-121 209-317 (531)
57 cd01461 vWA_interalpha_trypsin 30.8 1.8E+02 0.004 24.4 6.6 18 111-128 142-159 (171)
58 cd04250 AAK_NAGK-C AAK_NAGK-C: 29.7 1.4E+02 0.0031 28.3 6.2 49 191-241 9-59 (279)
59 PLN02825 amino-acid N-acetyltr 29.0 2.8E+02 0.006 29.3 8.6 51 191-246 12-66 (515)
60 PRK06683 hypothetical protein; 27.4 1.5E+02 0.0032 23.2 4.8 24 49-72 23-46 (82)
61 COG4996 Predicted phosphatase 27.2 95 0.0021 27.1 4.0 75 20-96 18-101 (164)
62 PF01985 CRS1_YhbY: CRS1 / Yhb 25.8 1.4E+02 0.003 23.3 4.5 64 49-129 12-76 (84)
63 PRK13601 putative L7Ae-like ri 25.7 1.6E+02 0.0035 23.0 4.8 24 49-72 20-43 (82)
64 KOG2663 Acetolactate synthase, 25.4 67 0.0015 30.8 3.0 27 199-226 121-147 (309)
65 KOG3633 BAG family molecular c 25.2 2.6E+02 0.0057 25.4 6.5 70 162-232 52-143 (219)
66 PRK14736 atpC F0F1 ATP synthas 24.9 2.9E+02 0.0063 23.5 6.7 53 143-195 67-125 (133)
67 cd04240 AAK_UC AAK_UC: Unchara 24.7 77 0.0017 28.8 3.3 14 232-245 28-44 (203)
68 PF14252 DUF4347: Domain of un 24.3 5E+02 0.011 23.0 8.6 28 102-129 99-126 (165)
69 PF01113 DapB_N: Dihydrodipico 22.6 1.1E+02 0.0024 25.3 3.6 54 28-89 70-123 (124)
70 PRK13602 putative ribosomal pr 21.9 2E+02 0.0043 22.3 4.7 23 49-71 23-45 (82)
71 PRK10343 RNA-binding protein Y 21.7 3.2E+02 0.0069 22.2 5.9 66 41-129 8-78 (97)
72 PF06723 MreB_Mbl: MreB/Mbl pr 20.6 1.8E+02 0.0039 28.7 5.1 83 168-250 185-295 (326)
73 TIGR01166 cbiO cobalt transpor 20.2 1.1E+02 0.0023 26.9 3.2 41 22-64 143-188 (190)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.8e-74 Score=591.67 Aligned_cols=328 Identities=37% Similarity=0.580 Sum_probs=315.9
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||++|||+++ ++|+.+++||+||++|++|+++++++|+|+. +.+.++||||++++|+++||++|+.||+++.
T Consensus 193 ~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~--i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~ 270 (545)
T PRK12852 193 MKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA--VVQSGKPLLIIAEDVEGEALATLVVNRLRGG 270 (545)
T ss_pred EEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH--HHHhCcCEEEECCCCcHHHHHHHHHhccccc
Confidence 579999999999999 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|+||+ +|+++|+|||++|||+++++..| +++++++||+|++|+++++++++++
T Consensus 271 ~~i~av~~~~~~~----------------~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~ 334 (545)
T PRK12852 271 LKVAAVKAPGFGD----------------RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVN 334 (545)
T ss_pred ceEEEEecCCccc----------------chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEe
Confidence 9999999999999 99999999999999999995322 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
+++++..+..|+++|+++++.+.+.|++++|+||+++|+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpG 414 (545)
T PRK12852 335 GAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPG 414 (545)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|+.|++++..++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI 494 (545)
T PRK12852 415 GGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGI 494 (545)
T ss_pred chHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcC
Confidence 9999999999999987667889999999999999999999999999999 999998877778999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
||| +.||+++|++|+++|++||.+|++|...
T Consensus 495 ~Dp-~~vk~~al~~A~e~a~~iL~id~iI~~~ 525 (545)
T PRK12852 495 IDP-AKVVRTALQDAASVAGLLVTTEAMVAEL 525 (545)
T ss_pred CcC-hHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 999 9999999999999999999999988754
No 2
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.1e-73 Score=584.47 Aligned_cols=328 Identities=35% Similarity=0.559 Sum_probs=315.7
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||+||||+++ +.++.++++|+||++|.+++++++++|+|+. +.+.|+||||++++|+++||++|+.|++++.
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~--i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~ 270 (546)
T PRK14104 193 MQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEA--VVQTGKPLVIVAEDVEGEALATLVVNRLRGG 270 (546)
T ss_pred EEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHH--HHHhCcCEEEECCCCcHHHHHHHHhCcccce
Confidence 579999999999999 8899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
++++|||+|+||+ +|+++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 271 ~~i~av~~~~~g~----------------~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~ 334 (546)
T PRK14104 271 LKVAAVKAPGFGD----------------RRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVN 334 (546)
T ss_pred eeEEEEeccCCCc----------------chHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEe
Confidence 9999999999999 99999999999999999999433 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
+|++++.+..|+++|+++++++.++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||+|++++++++|||||
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpG 414 (546)
T PRK14104 335 GAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPG 414 (546)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|+++...++++|+|+++|++||+.||++||+|||+|+. ++.+|++.+.+++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI 494 (546)
T PRK14104 415 GGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGI 494 (546)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCC
Confidence 9999999999999885458899999999999999999999999999999 999998766678999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
||| +.||+++|++|+++|++||.+|++|...
T Consensus 495 ~Dp-~~vk~~al~~A~~~a~~iL~id~~I~~~ 525 (546)
T PRK14104 495 IDP-TKVVRTAIQNAASVAALLITTEAMVAEL 525 (546)
T ss_pred EEc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999 9999999999999999999999998653
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-72 Score=582.27 Aligned_cols=329 Identities=37% Similarity=0.570 Sum_probs=315.2
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||.+|||+++ ++|+.+++||+||++|++|++++++.|+++. +.+.|+||||++++|+++|+++|+.|++++.
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~--i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~ 269 (542)
T PRK00013 192 MQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ--VAQSGKPLLIIAEDVEGEALATLVVNKLRGT 269 (542)
T ss_pred EEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH--HHHhCCCEEEECCCCcHHHHHHHHHcCCccc
Confidence 478999999999999 8899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|+||+ +|+++|+|||.+|||+++++..| +++++++||+|++|+++++++++++
T Consensus 270 ~~i~avr~~~~~~----------------~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 333 (542)
T PRK00013 270 LKVVAVKAPGFGD----------------RRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVD 333 (542)
T ss_pred ceEEEEecCCccc----------------chhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEe
Confidence 9999999999999 99999999999999999994322 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.+..|+++|+++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|+||+++||+|++|+++++|||||
T Consensus 334 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpG 413 (542)
T PRK00013 334 GAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPG 413 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|+++...++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||++.||
T Consensus 414 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI 493 (542)
T PRK00013 414 GGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGI 493 (542)
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccC
Confidence 9999999999999883338899999999999999999999999999999 999998866678999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
||| +.||+++|++|+++|++||.+|++|...+
T Consensus 494 ~Dp-~~vk~~al~~A~~~a~~iL~id~iI~~~~ 525 (542)
T PRK00013 494 IDP-TKVTRSALQNAASVAGLLLTTEAVVADKP 525 (542)
T ss_pred eec-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999 99999999999999999999999987654
No 4
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=9.7e-73 Score=584.41 Aligned_cols=329 Identities=40% Similarity=0.639 Sum_probs=315.6
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||++|||+++ ++|+.+++||+||++|++|+++++++|+|+. +.+.|+||||++++|+++|+++|+.|+++++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~--i~~~~~~llI~~~~i~~~al~~L~~n~~~g~ 281 (555)
T PTZ00114 204 MSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEH--AVKNKRPLLIIAEDVEGEALQTLIINKLRGG 281 (555)
T ss_pred EEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHH--HHHhCCCEEEECCCCcHHHHHHHHHhCCCCc
Confidence 579999999999999 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeecc-CC---CCCCCCCceeecEEEEecceEEEE
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAA-SN---SLYIPLMLGSCKKVKVTNNEMIIH 155 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~-~~---~~~~~~~LG~a~~v~v~~~~~~~i 155 (352)
+++++||+|++|+ +++++|+|||++|||+++++. .+ +++++++||+|++|++++++++++
T Consensus 282 ~~i~avk~~~~g~----------------~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~ 345 (555)
T PTZ00114 282 LKVCAVKAPGFGD----------------NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVIL 345 (555)
T ss_pred eEEEEEecCCCCc----------------chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEE
Confidence 9999999999999 999999999999999999997 33 577888999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 018642 156 GGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIP 235 (352)
Q Consensus 156 ~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVp 235 (352)
++++++..|++|+++|+.+++...++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||+|++|+++++||||
T Consensus 346 ~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVp 425 (555)
T PTZ00114 346 TGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVP 425 (555)
T ss_pred eCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccCC---CChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchh
Q 018642 236 GGGVALLHASEELEKLPA---MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAV 311 (352)
Q Consensus 236 GGGaael~~s~~L~~~~~---~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~ 311 (352)
|||++|+++|..|++++. .++++|+|+++|++||++||++||+|||+|+. ++++|++.+++++|||+.+|+++||+
T Consensus 426 GGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~ 505 (555)
T PTZ00114 426 GGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMF 505 (555)
T ss_pred CCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHH
Confidence 999999999999998864 37899999999999999999999999999999 99999875567899999999999999
Q ss_pred hCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 312 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 312 ~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
+.||||| +.||+++|++|+++|++||.+|++|...+
T Consensus 506 ~~GI~Dp-~~vk~~al~~A~~~A~~iL~id~iI~~~~ 541 (555)
T PTZ00114 506 EAGIIDP-TKVVRSALVDAASVASLMLTTEAAIVDLP 541 (555)
T ss_pred hCCCEeC-HHHHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 9999999 99999999999999999999999988754
No 5
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.5e-72 Score=578.38 Aligned_cols=329 Identities=36% Similarity=0.558 Sum_probs=315.8
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||.+|||+++ ++|+..++||+||++|++|++++++.|++++ +.+.++||||++++|+++|+++|..|++++.
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~--i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~ 269 (542)
T PRK12849 192 MQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK--VAQSGKPLLIIAEDVEGEALATLVVNKLRGG 269 (542)
T ss_pred EEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH--HHHhCCCEEEECCCCcHHHHHHHHHhhhhcc
Confidence 468999999999999 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|++++ +|+++|+|||.+|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 270 ~~i~avr~~~~~~----------------~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 333 (542)
T PRK12849 270 LKVAAVKAPGFGD----------------RRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVD 333 (542)
T ss_pred ccEEEEeCCCccc----------------hhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEe
Confidence 9999999999999 99999999999999999995322 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.+..|+++|+++++.+.++|++++|+||+++|+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||
T Consensus 334 g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpG 413 (542)
T PRK12849 334 GAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPG 413 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|++++..++++|+|+++|++||++||++||+|||+|+. ++++|++.+ +++|||+.+|+++||++.||
T Consensus 414 GGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV 492 (542)
T PRK12849 414 GGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGI 492 (542)
T ss_pred CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccC
Confidence 9999999999999988348999999999999999999999999999999 999998875 57999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhccCC
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKG 349 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~~ 349 (352)
||| +.||+++|++|+++|++||.+|++|...+.
T Consensus 493 ~Dp-~~vk~~al~~A~e~A~~iL~id~iI~~~~~ 525 (542)
T PRK12849 493 IDP-VKVTRSALQNAASVAGLLLTTEALVADKPE 525 (542)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHhHHHHHhcCCc
Confidence 999 999999999999999999999999977543
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.8e-72 Score=575.93 Aligned_cols=327 Identities=36% Similarity=0.565 Sum_probs=314.3
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|+|++||.+|||+++ ++|+.+++||+||++|+++++.+++.|+++. +.+.++||||++++|+++|+++|+.|+++|.
T Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~--i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~ 270 (541)
T PRK12851 193 MQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA--VVQSGKPLLIIAEDVEGEALATLVVNKLRGG 270 (541)
T ss_pred EEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH--HHHhCcCEEEECCCCChHHHHHHHHcCCcCc
Confidence 478999999999999 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
++++|||+|+||+ .|+++|+|||++|||+++++..+ +++++++||+|++|++++++|++++
T Consensus 271 ~~i~av~~p~~~~----------------~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 334 (541)
T PRK12851 271 LKVAAVKAPGFGD----------------RRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIID 334 (541)
T ss_pred eeEEEEecCcccc----------------ccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEc
Confidence 9999999999999 99999999999999999995321 7888889999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.+..|+++|+++++.+.++|++++|+||+++|+|+++||+|||+|+.+++|+||+++||+|++++|+++|||||
T Consensus 335 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpG 414 (541)
T PRK12851 335 GAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPG 414 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|++++..++++|+|+++|++||++||++||+|||+|+. ++++|++.+ .++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GI 493 (541)
T PRK12851 415 GGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGV 493 (541)
T ss_pred chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccC
Confidence 9999999999999887568899999999999999999999999999999 999998865 47999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
||| +.||+++|++|+++|++||.+|++|...
T Consensus 494 iDp-~~vk~~al~~A~e~A~~iL~id~iI~~~ 524 (541)
T PRK12851 494 IDP-VKVVRTALQNAASVAGLLLTTEAMVAEK 524 (541)
T ss_pred Eec-HHHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 999 9999999999999999999999998765
No 7
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.5e-72 Score=575.62 Aligned_cols=328 Identities=38% Similarity=0.581 Sum_probs=314.4
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|+|++||.+|||+++ ++|+.+++||+||++|+++++.+++.|+++. +.+.|+||||++++|+++||++|+.|++++.
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~--i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~ 270 (544)
T PRK12850 193 MQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA--VVQSGRPLLIIAEDVEGEALATLVVNKLRGG 270 (544)
T ss_pred EEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH--HHHhCCCEEEECCCCChHHHHHHHHcCCccc
Confidence 579999999999999 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
++++|||+|+||+ +|+++|+|||++|||+++++..+ +++++++||+|++|++++++|++++
T Consensus 271 ~~~~avk~p~~g~----------------~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 334 (544)
T PRK12850 271 LKSVAVKAPGFGD----------------RRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIID 334 (544)
T ss_pred ceEEEEeCCCcCc----------------ccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEe
Confidence 9999999999999 99999999999999999995322 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.+..|+++|+++++.+.++|++++|+||+++|+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||
T Consensus 335 g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpG 414 (544)
T PRK12850 335 GAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPG 414 (544)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|+++...++++|+|+++|++||++||++||+|||+|+. ++++|++.+ .++|||+.+|+++||++.||
T Consensus 415 GGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI 493 (544)
T PRK12850 415 GGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGI 493 (544)
T ss_pred CcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccC
Confidence 9999999999999984348899999999999999999999999999999 999998764 57999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
||| +.||+++|++|+++|++||.+|++|...+
T Consensus 494 ~Dp-~~vk~~al~~A~~~a~~iL~id~iI~~~~ 525 (544)
T PRK12850 494 IDP-AKVTRTALQDAASIAALLITTEAMVAEAP 525 (544)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHhHHHhhccCC
Confidence 999 99999999999999999999999887763
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.2e-71 Score=573.07 Aligned_cols=327 Identities=37% Similarity=0.575 Sum_probs=312.2
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||.+|||+++ ++|+..++||+||++|++|++++++.|+|+. +.+.|+||||++++|+++|+++|+.|++++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~--i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~ 268 (524)
T TIGR02348 191 MQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEK--VAQSGKPLLIIAEDVEGEALATLVVNKLRGT 268 (524)
T ss_pred EEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHH--HHHhCcCEEEECCCCChHHHHHHHHhhcccc
Confidence 468999999999999 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|++++ +|+++|+|||++|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 269 ~~i~avr~~~~~~----------------~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 332 (524)
T TIGR02348 269 LNVCAVKAPGFGD----------------RRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVE 332 (524)
T ss_pred cceEEEECCCccc----------------hhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEc
Confidence 9999999999999 99999999999999999994221 7888999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.+..|+++|+++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+|++|+++++|||||
T Consensus 333 ~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpG 412 (524)
T TIGR02348 333 GAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPG 412 (524)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|..|++....++++|+|+++|++||++||++||+|||+|+. ++++|++. +.++|||+.+|+++||++.||
T Consensus 413 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI 491 (524)
T TIGR02348 413 GGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGI 491 (524)
T ss_pred CcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccC
Confidence 9999999999999843338899999999999999999999999999999 99999876 345999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
||| +.||+++|++|+++|++||.+|++|..+
T Consensus 492 ~Dp-~~vk~~al~~A~~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 492 IDP-TKVTRSALQNAASIAGLLLTTEAVVADK 522 (524)
T ss_pred EEc-HHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 999 9999999999999999999999999764
No 9
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-71 Score=579.68 Aligned_cols=329 Identities=32% Similarity=0.497 Sum_probs=312.8
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|.|++||+||||+++ ++|+.+++||+||++|++|+++++++|+++. +.+.++||||++++|+++||++|+.|++++.
T Consensus 247 ~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~--i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~ 324 (600)
T PLN03167 247 MQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILED--AIRGGYPLLIIAEDIEQEALATLVVNKLRGS 324 (600)
T ss_pred EEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHH--HHHhCcCEEEEcCCCCHHHHHHHHHhhcccc
Confidence 579999999999999 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|+||+ +|+++|+|||++|||+++++..+ +++++++||+|++|++++++|++++
T Consensus 325 ~~i~aVk~p~~g~----------------~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig 388 (600)
T PLN03167 325 LKIAALKAPGFGE----------------RKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVG 388 (600)
T ss_pred ceEEEEEcccCCc----------------chHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeC
Confidence 9999999999999 99999999999999999995432 7888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
+.++++.+++|+.+|+..++.+.++|++++|++|+++|+|++++|+|||+|+.+++|+||+++||||++|+|+++|+|||
T Consensus 389 ~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpG 468 (600)
T PLN03167 389 DGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVG 468 (600)
T ss_pred CCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCC-ChhHH-HHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhC
Q 018642 237 GGVALLHASEELEKLPAM-NIGEK-IGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKS 313 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~-~~~eq-~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~ 313 (352)
||++|+++|..|++++.. ++++| +|++++++||++||++||+|||+|+. ++++|+..+++++|||+.+|+++||++.
T Consensus 469 GGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~ 548 (600)
T PLN03167 469 GGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAA 548 (600)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhc
Confidence 999999999999988654 45555 67999999999999999999999999 9999986566789999999999999999
Q ss_pred CcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 314 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 314 GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
||||| ++||+++|++|+++|++||.+|++|...+
T Consensus 549 GI~Dp-~~Vk~~al~~A~~~A~~iL~iD~iI~~~~ 582 (600)
T PLN03167 549 GIIDP-TKVVRCCLEHAASVAKTFLTSDCVVVEIK 582 (600)
T ss_pred cCeec-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999 99999999999999999999999998753
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.6e-71 Score=570.01 Aligned_cols=327 Identities=35% Similarity=0.560 Sum_probs=311.0
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCH-HHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDK-NIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFS 78 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~-~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~ 78 (352)
|.|++||++|||+++ ++|+++++||+||++|++|+.. .+++|+|+. +.+.++||||++++|+++++++|+.|+.++
T Consensus 192 ~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~--i~~~~~~lvi~~~~i~~~al~~l~l~k~~g 269 (529)
T CHL00093 192 MRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQ--VTKTKRPLLIIAEDVEKEALATLVLNKLRG 269 (529)
T ss_pred EEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHH--HHhcCCCEEEEcCCCChHHHHHHHHhhhcc
Confidence 579999999999999 8899999999999999999987 789999999 999999999999999999999999999999
Q ss_pred cceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEE
Q 018642 79 KTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIH 155 (352)
Q Consensus 79 ~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i 155 (352)
.++++|||+|++|+ +|+++|+|||++|||+++++..| +++++++||+|++|++++++++++
T Consensus 270 ~~~i~avr~~~~~~----------------~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~ 333 (529)
T CHL00093 270 IVNVVAVRAPGFGD----------------RRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTII 333 (529)
T ss_pred cceEEEEecCCCCc----------------chHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEE
Confidence 99999999999999 99999999999999999995332 788889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 018642 156 GGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIP 235 (352)
Q Consensus 156 ~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVp 235 (352)
+ .++++.++.||++++++++.++++|++++|+||+++|+|+++||+|||+|+.+++|+||+++||+|++|+++++|+||
T Consensus 334 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVp 412 (529)
T CHL00093 334 A-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVP 412 (529)
T ss_pred e-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 8 677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccCC--CChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhh
Q 018642 236 GGGVALLHASEELEKLPA--MNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVK 312 (352)
Q Consensus 236 GGGaael~~s~~L~~~~~--~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~ 312 (352)
|||++|+++|..|++++. .++++|+|+++|++||+.||++||+|||+|+. +++++++. +.++|||+.+|+++||++
T Consensus 413 GGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~ 491 (529)
T CHL00093 413 GGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYE 491 (529)
T ss_pred CCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHh
Confidence 999999999999999864 38999999999999999999999999999999 99999876 458999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 313 SAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 313 ~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
.||||| ++||+++|++|+++|++||.+|++|...+
T Consensus 492 ~GI~Dp-~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 492 AGIIDP-AKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred ccCEEc-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999 99999999999999999999999887643
No 11
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.6e-71 Score=567.39 Aligned_cols=324 Identities=41% Similarity=0.642 Sum_probs=311.1
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
+.|++||.+|||+++ ++|+.+++||+||++|++++++++++|+|+. +.+.|+||||++++|+++|+++|+.|+++++
T Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~--i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~ 267 (520)
T cd03344 190 MQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILEL--VAKAGRPLLIIAEDVEGEALATLVVNKLRGG 267 (520)
T ss_pred EEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHH--HHhhCCCEEEEcCCCCHHHHHHHHHcCCccC
Confidence 468999999999999 7899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC---CCCCCCCceeecEEEEecceEEEEc
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN---SLYIPLMLGSCKKVKVTNNEMIIHG 156 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~---~~~~~~~LG~a~~v~v~~~~~~~i~ 156 (352)
+++++||+|++++ .++++|+|||.+|||+++++..+ +++++++||+|++|+++++++++++
T Consensus 268 ~~v~avk~~~~~~----------------~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~ 331 (520)
T cd03344 268 LKVCAVKAPGFGD----------------RRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIG 331 (520)
T ss_pred ceEEEEeCCCCCc----------------ccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEe
Confidence 9999999999999 99999999999999999995422 7888889999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 018642 157 GSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIPG 236 (352)
Q Consensus 157 ~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVpG 236 (352)
++++++.++.|+++|+++++.+.++|++++|+||+++|+|++|||+|||+|+.+++|++|+++||+|++|+++++|||||
T Consensus 332 ~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpG 411 (520)
T cd03344 332 GAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPG 411 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhCCc
Q 018642 237 GGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAI 315 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~GI 315 (352)
||++|+++|+.|++++..++++|+|+++|++||++||++||+|||+|+. ++++|++.+. ++|||+.+|+++||++.||
T Consensus 412 GGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV 490 (520)
T cd03344 412 GGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGI 490 (520)
T ss_pred CcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccC
Confidence 9999999999999987678899999999999999999999999999999 9999988765 8999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhHhHh
Q 018642 316 VDPPLKLIRNELDDAVSYFVSRWCSTEKL 344 (352)
Q Consensus 316 iDP~~~Vk~~al~~A~~~A~~iL~~de~i 344 (352)
||| +.||+++|++|+++|++||.+|..|
T Consensus 491 ~Dp-~~vk~~~l~~A~~~a~~iL~id~~i 518 (520)
T cd03344 491 IDP-TKVVRSALQNAASVASLLLTTEALV 518 (520)
T ss_pred eec-HHHHHHHHHHHHHHHHHHHhhheEE
Confidence 999 9999999999999999998887665
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-72 Score=554.43 Aligned_cols=321 Identities=39% Similarity=0.603 Sum_probs=309.3
Q ss_pred CeecceecccccccC-cCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhcccccc
Q 018642 1 MKLNWGSMSRYFLYE-EDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSK 79 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~ 79 (352)
|+||+||+||||+++ +.++++|++|++|+++.||+++++|.|+|+. ..+..+||||||+||+++||++|+.|+++++
T Consensus 206 mkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~--A~~~~~PLliIAeDi~~eaL~tLIlNkLk~g 283 (550)
T KOG0356|consen 206 MKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALEL--ALAKRRPLLIIAEDIDGEALATLVLNKLKGG 283 (550)
T ss_pred ccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHH--hhhccCceEEEehhcchhHHHHHHhhhhccc
Confidence 899999999999999 9999999999999999999999999999999 9998999999999999999999999999999
Q ss_pred ceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC----CCCCCCCceeecEEEEecceEEEE
Q 018642 80 TKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVKVTNNEMIIH 155 (352)
Q Consensus 80 ~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~----~~~~~~~LG~a~~v~v~~~~~~~i 155 (352)
++|||||+|+||| +|++.+.||+.+||++++..+.+ +.+++++||.|++|.++++++.++
T Consensus 284 lqV~AvKapgfGd----------------nrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll 347 (550)
T KOG0356|consen 284 LQVVAVKAPGFGD----------------NRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLL 347 (550)
T ss_pred eeEEEEecCCCcc----------------hHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceee
Confidence 9999999999999 99999999999999999998865 778889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 018642 156 GGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEGIIP 235 (352)
Q Consensus 156 ~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~gvVp 235 (352)
.+.+++..++.||++++..++.+.+.|++++|+||+++|+|++++|.|||.||.|++|++++++||||++++|+++||||
T Consensus 348 ~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivp 427 (550)
T KOG0356|consen 348 KGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVP 427 (550)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCCCCeeeeCCCCcccchhhC
Q 018642 236 GGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKS 313 (352)
Q Consensus 236 GGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~~~~G~d~~~g~~~dm~~~ 313 (352)
|||+++++|++.|+++... +.+++.|++++.+||..|.++||+|||.|+. ++.|++. .++|||+.+|+|+||++.
T Consensus 428 GGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~ 504 (550)
T KOG0356|consen 428 GGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEA 504 (550)
T ss_pred CCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhc
Confidence 9999999999999998764 7889999999999999999999999999999 9999983 389999999999999999
Q ss_pred CcccCchhHHHHHHHHHHHHHHHHHhhHhHh
Q 018642 314 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKL 344 (352)
Q Consensus 314 GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i 344 (352)
||+|| ++|++++|.+|.++|++++. +|.+
T Consensus 505 GiidP-~kVvr~al~~a~~vasll~t-te~v 533 (550)
T KOG0356|consen 505 GIIDP-TKVVRTALTDAAGVASLLTT-TEAV 533 (550)
T ss_pred cCCCh-HHHHHHhhhhhhHHHHHHhh-heeE
Confidence 99999 99999999999999999954 4443
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-60 Score=482.42 Aligned_cols=308 Identities=29% Similarity=0.405 Sum_probs=286.5
Q ss_pred CeecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccc
Q 018642 1 MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKT 80 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~ 80 (352)
|+||+||+||||+++ .+++||+||++|++|+..+..+| ++. ..+.+.||+++++++++++|..++.|.++++.
T Consensus 199 ~~~dkg~~s~~~~~~----~~~e~~~Ili~d~~l~~~k~~l~-~e~--~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~ 271 (524)
T COG0459 199 MVFDKGYLSPYFMPD----KRLENPKILLLDKKLEIKKPELP-LEI--VISSGKPLLIIAEDEEGEALATLVVNILRGGA 271 (524)
T ss_pred EEecCCccCCCCCCc----cccccceEEEEccccccccccCc-cee--EecCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999776 78889999999999999999999 888 88888999999999999999999999999999
Q ss_pred eEEEecCCCCCCchhhhhcccchhhhhHhhHHHH-HHHHHHhCCeEeeccCCCCCCCCCcee--ecEEEEecceEEEEcC
Q 018642 81 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIM-RDIAILTGGRVVTAASNSLYIPLMLGS--CKKVKVTNNEMIIHGG 157 (352)
Q Consensus 81 ~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~L-edia~~tG~~iis~~~~~~~~~~~LG~--a~~v~v~~~~~~~i~~ 157 (352)
++|+|+.|+|+|..+.+|-+.++|+.++..++++ ++|+.+|||++++.. ++.++..+|. |+.|+.++
T Consensus 272 ~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~--~d~t~~~~G~~~~~~ve~~~-------- 341 (524)
T COG0459 272 NVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVL--KDLTTIVLGEGAAGLVEETK-------- 341 (524)
T ss_pred CEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeec--ccCceeecCccccceEEEee--------
Confidence 9999999999999999999999999999999999 899999999999999 8999999999 88876432
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-cccc
Q 018642 158 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPG 236 (352)
Q Consensus 158 ~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpG 236 (352)
.++|++.++++|.++ .+++|||+|||+|+.+++|+||++|||||++|+++++| +|||
T Consensus 342 ---------------------~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~G 399 (524)
T COG0459 342 ---------------------TGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPG 399 (524)
T ss_pred ---------------------ccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeC
Confidence 234677788888888 89999999999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHHHhcc-CCCCh-hHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCC-CCeeeeCCCCcc-cchh
Q 018642 237 GGVALLHASEELEKL-PAMNI-GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQEN-PDLEYDPPRDEY-VDAV 311 (352)
Q Consensus 237 GGaael~~s~~L~~~-~~~~~-~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~~-~~~G~d~~~g~~-~dm~ 311 (352)
||++|+++++.|+++ ...++ ++|+|+++|++||+.||++||+|||+||. ++.+|++.+. +++|||+.+|++ .||+
T Consensus 400 GGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~ 479 (524)
T COG0459 400 GGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMI 479 (524)
T ss_pred CCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchH
Confidence 999999999999998 33354 99999999999999999999999999999 9999999764 469999999999 8899
Q ss_pred hCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 312 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 312 ~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
+.||||| ++|++++|++|+++|+++|.+|++|...+
T Consensus 480 ~~GI~dP-~~v~~~al~~A~e~a~llL~~d~iI~~~~ 515 (524)
T COG0459 480 EAGIIDP-LKVKRSALKNAAEAAGLLLTIDDIIAAKP 515 (524)
T ss_pred hccCcCh-HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999 99999999999999999999999887654
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-54 Score=437.54 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=238.0
Q ss_pred eecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccce
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTK 81 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~ 81 (352)
.|++||.+|+| +.+++||+|+++|++|+..+.-.+ ... -.||||++++|+++|+++|..|+
T Consensus 207 ~~~~~~~~~~m------~~~~~n~~Ill~~~~le~~~~~~~-~~~------~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDM------PKRVENAYILTCNVSLEYEKTEVN-SGF------FYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCC------CccccCceEEEEeCCCCCCccccC-cEE------EEEEEEeCCCccHHHHHHHHHCC------
Confidence 45666666654 678899999999999987654222 111 14699999999999999999886
Q ss_pred EEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEE---EEecceEEEEcCC
Q 018642 82 LCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV---KVTNNEMIIHGGS 158 (352)
Q Consensus 82 v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v---~v~~~~~~~i~~~ 158 (352)
++|||+. ++++|+|||++|||+++++. +++++++||+|++| ++++++++++++|
T Consensus 268 I~av~~~---------------------~~~~l~~ia~~tGa~ii~~l--~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~ 324 (484)
T cd03342 268 ILALRRA---------------------KRRNMERLTLACGGVAMNSV--DDLSPECLGYAGLVYERTLGEEKYTFIEGV 324 (484)
T ss_pred CeEEEeC---------------------CHHHHHHHHHHhCCEEeccc--ccCChhhCcccceEEEEEECCeEEEEEECC
Confidence 6799984 45569999999999999999 89999999999999 5678899999988
Q ss_pred CChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccc
Q 018642 159 GNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGG 237 (352)
Q Consensus 159 ~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGG 237 (352)
+++ ++|||+|||+|+.+++|.||+++||++++++++++| +||||
T Consensus 325 ~~~-----------------------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGG 369 (484)
T cd03342 325 KNP-----------------------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGA 369 (484)
T ss_pred CCC-----------------------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCC
Confidence 763 579999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc---CCCCeeeeCCCCcccchhh
Q 018642 238 GVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVK 312 (352)
Q Consensus 238 Gaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~dm~~ 312 (352)
|++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.+|+.. ++.++|||+.+|+++||++
T Consensus 370 Ga~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~ 449 (484)
T cd03342 370 GAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPES 449 (484)
T ss_pred CHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhh
Confidence 99999999999998665 8899999999999999999999999999999 99999753 4567999999999999999
Q ss_pred CCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 313 SAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 313 ~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
.||||| +.||+++|++|+++|++||.+|+++.+.
T Consensus 450 ~gI~dp-~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 450 EGIWDN-YSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cCcEEc-HHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 999999 9999999999999999999999998654
No 15
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=7.9e-53 Score=434.52 Aligned_cols=281 Identities=16% Similarity=0.203 Sum_probs=250.4
Q ss_pred eecceecccccccC-c---CceeEeeCceeeeecCCC--------------CCHHHHHHHHhh--------cc-cccCCC
Q 018642 2 KLNWGSMSRYFLYE-E---DQTLDLKNPFILIHENKI--------------LDKNIFAQAIGA--------IS-CNEVKR 54 (352)
Q Consensus 2 ~~~~G~~s~~f~~~-~---~~~~~l~~~~il~~d~~i--------------~~~~~i~~~l~~--------~~-~~~~~~ 54 (352)
.++++|++|+|+.+ + .|+.+++||+||++|++| ++++++..+.+. +. +.+.|.
T Consensus 210 si~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv 289 (533)
T PTZ00212 210 TLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGC 289 (533)
T ss_pred CccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999998 5 789999999999999987 666664333211 22 777788
Q ss_pred cEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCC
Q 018642 55 PLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLY 134 (352)
Q Consensus 55 pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~ 134 (352)
.++++.+.|++.++++|..+++ ++||+++. ..++|||++|||+++++. +++
T Consensus 290 ~vvv~~~~I~d~a~~~L~~~~I------~avr~v~~---------------------~~l~rIa~~tGa~iis~l--~~~ 340 (533)
T PTZ00212 290 NVFINRQLIYNYPEQLFAEAGI------MAIEHADF---------------------DGMERLAAALGAEIVSTF--DTP 340 (533)
T ss_pred eEEEeCCCccHHHHHHHHHCCC------EEEecCCH---------------------HHHHHHHHHhCCEEeecC--CCC
Confidence 8999999999999999887664 78997543 349999999999999998 899
Q ss_pred CCCCceeecEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHH
Q 018642 135 IPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAES 211 (352)
Q Consensus 135 ~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l 211 (352)
++++||+|++|+ +++++++++.+|.. +++|||+|||+|+.++
T Consensus 341 ~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~~l 385 (533)
T PTZ00212 341 EKVKLGHCDLIEEIMIGEDKLIRFSGCAK-----------------------------------GEACTIVLRGASTHIL 385 (533)
T ss_pred CHHHccCCceEEEEEECCeEEEEEEccCC-----------------------------------CCEEEEEEECCChhHH
Confidence 999999999998 67789999988754 5689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHH
Q 018642 212 RKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVE 288 (352)
Q Consensus 212 ~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~ 288 (352)
+|.||+++||||++|+++++| +|||||++|+++|..|++++.. ++++|+|+++|++||+.||++||+|||+|+. ++.
T Consensus 386 ~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~ 465 (533)
T PTZ00212 386 DEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVS 465 (533)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999998 9999999999999999998665 8899999999999999999999999999999 999
Q ss_pred HHHc---cCCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 289 KLLG---QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 289 kl~~---~~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
+|++ +++.++|||+.+|+++||++.||||| +.||+++|+.|+++|++||.+|++|...
T Consensus 466 ~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp-~~vk~~al~~A~e~a~~iL~id~ii~~~ 526 (533)
T PTZ00212 466 KLRAEHYKGNKTAGIDMEKGTVGDMKELGITES-YKVKLSQLCSATEAAEMILRVDDIIRCA 526 (533)
T ss_pred HHHHHHHccCCccceeccCCcccchhhccceec-HHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence 9985 34567999999999999999999999 9999999999999999999999998763
No 16
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-52 Score=430.46 Aligned_cols=274 Identities=16% Similarity=0.259 Sum_probs=243.2
Q ss_pred eecceecccccccCcCceeEeeCceeeeecCC-------------CCCHHHHHHHHhh--------cc-cccCCCcEEEE
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHENK-------------ILDKNIFAQAIGA--------IS-CNEVKRPLLVV 59 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~-------------i~~~~~i~~~l~~--------~~-~~~~~~pllii 59 (352)
.|++||.+|+ |+..++||+|++++++ +++++++.++++. ++ +.+.|.||||+
T Consensus 212 v~~~~~~~~~------m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~ 285 (517)
T cd03343 212 VIDKEVVHPG------MPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFC 285 (517)
T ss_pred EEeccCCCCC------CccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 3555555554 5678899999999998 5788888887662 12 88889999999
Q ss_pred ecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCc
Q 018642 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLML 139 (352)
Q Consensus 60 ~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~L 139 (352)
+++|+++|+++|..++ +++|++ .++++|+|||++|||+++++. +++++++|
T Consensus 286 ~~~I~~~al~~l~~~g------I~~v~~---------------------v~~~~l~~Ia~~tGa~ii~~~--~~l~~~~L 336 (517)
T cd03343 286 QKGIDDLAQHYLAKAG------ILAVRR---------------------VKKSDMEKLARATGAKIVTNI--DDLTPEDL 336 (517)
T ss_pred CCCccHHHHHHHhHCC------cEEEEe---------------------CCHHHHHHHHHHhCCEEecch--hhCChhhC
Confidence 9999999999987554 357776 556779999999999999998 89999999
Q ss_pred eeecEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHH
Q 018642 140 GSCKKVKVT---NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRK 216 (352)
Q Consensus 140 G~a~~v~v~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er 216 (352)
|+|++|++. +++++++++|+++ ..+||+|||+|+.+++|.+|
T Consensus 337 G~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~e~~~ 381 (517)
T cd03343 337 GEAELVEERKVGDDKMVFVEGCKNP-----------------------------------KAVTILLRGGTEHVVDELER 381 (517)
T ss_pred CccceEEEEEECCeEEEEEEcCCCC-----------------------------------ceEEEEEECCcHHHHHHHHH
Confidence 999999875 7789999988763 35899999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc
Q 018642 217 RATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ 293 (352)
Q Consensus 217 ~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~ 293 (352)
+++||++++|+++++| ||||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.++++.
T Consensus 382 ~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 461 (517)
T cd03343 382 ALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAA 461 (517)
T ss_pred HHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999988654 8899999999999999999999999999999 99999843
Q ss_pred ---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhc
Q 018642 294 ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 346 (352)
Q Consensus 294 ---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~ 346 (352)
+..++|||+.+|.++||++.||||| +.||+++|++|+++|++||.+|++|.+
T Consensus 462 h~~~~~~~G~d~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 462 HEKGNKNAGLDVYTGEVVDMLEKGVIEP-LRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred HHccCCceeeecCCCCccchhhcCceec-HHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 4567999999999999999999999 999999999999999999999998853
No 17
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-52 Score=429.77 Aligned_cols=281 Identities=16% Similarity=0.224 Sum_probs=250.2
Q ss_pred eecceecccccccC-c---CceeEeeCceeeeecCCCC--------------CHHHHHHHHhh--------cc-cccCCC
Q 018642 2 KLNWGSMSRYFLYE-E---DQTLDLKNPFILIHENKIL--------------DKNIFAQAIGA--------IS-CNEVKR 54 (352)
Q Consensus 2 ~~~~G~~s~~f~~~-~---~~~~~l~~~~il~~d~~i~--------------~~~~i~~~l~~--------~~-~~~~~~ 54 (352)
+++++|++|+|+.+ + .|+..++||+||++|++|+ +++++.++.+. +. +.+.|.
T Consensus 198 s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv 277 (517)
T cd03336 198 SLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGI 277 (517)
T ss_pred CccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999986 3 3478999999999999765 55666443211 12 778899
Q ss_pred cEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCC
Q 018642 55 PLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLY 134 (352)
Q Consensus 55 pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~ 134 (352)
+++++++.|++.++++|..++ +++|++|++.+ |+|||.+|||+++++. +++
T Consensus 278 ~~v~~~~~I~~~~~~~l~~~~------I~av~~v~~~~---------------------L~rIa~~tGa~ii~~l--~~~ 328 (517)
T cd03336 278 NCFINRQLIYNYPEQLFADAG------IMAIEHADFDG---------------------VERLALVTGGEIASTF--DHP 328 (517)
T ss_pred eEEEeCCCccHHHHHHHHHCC------cEEEecCCHHH---------------------HHHHHHHhCCEEeccc--CCC
Confidence 999999999999999988766 57999998666 9999999999999998 899
Q ss_pred CCCCceeecEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHH
Q 018642 135 IPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAES 211 (352)
Q Consensus 135 ~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l 211 (352)
++++||+|++|+. ++++++++.+|++ +++|||+|||+|+.++
T Consensus 329 ~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~~l 373 (517)
T cd03336 329 ELVKLGTCKLIEEIMIGEDKLIRFSGVAA-----------------------------------GEACTIVLRGASQQIL 373 (517)
T ss_pred CcccccccceEEEEEECCeEEEEEEccCC-----------------------------------CceEEEEEeCCCHHHH
Confidence 9999999999974 4668888888764 4689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHH
Q 018642 212 RKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVE 288 (352)
Q Consensus 212 ~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~ 288 (352)
+|.||+++||+|++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.
T Consensus 374 ~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~ 453 (517)
T cd03336 374 DEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVA 453 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999998 9999999999999999998665 8899999999999999999999999999999 999
Q ss_pred HHHcc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 289 KLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 289 kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
+|++. ++.++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|++|...
T Consensus 454 ~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~ 514 (517)
T cd03336 454 QLRAAHYNGNTTAGLDMRKGTVGDMKELGITES-FKVKRQVLLSASEAAEMILRVDDIIKCA 514 (517)
T ss_pred HHHHHHHcCCCceeeecCCCCccchhhcCceec-HHHHHHHHHHHHHHHHHHHhHhHHhhcC
Confidence 99863 4567999999999999999999999 9999999999999999999999998764
No 18
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.6e-53 Score=434.11 Aligned_cols=270 Identities=18% Similarity=0.206 Sum_probs=236.1
Q ss_pred eecceecccccccCcCceeEeeCceeeeecC-----------C--CCCHHH-----------HHHHHhhcccccCCCcEE
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHEN-----------K--ILDKNI-----------FAQAIGAISCNEVKRPLL 57 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~-----------~--i~~~~~-----------i~~~l~~~~~~~~~~pll 57 (352)
.|++||.+|+|.+ .++||+|++.++ + ++++++ +.++++. +.+.|.|||
T Consensus 220 vi~~~~~~~~m~~------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~--i~~~g~~lv 291 (526)
T cd03339 220 VIDKDFSHPQMPK------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQ--VKDAGANLV 291 (526)
T ss_pred EEecccCCCCCCc------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHH--HHHCCCCEE
Confidence 4666776676654 445555555553 3 566666 6777888 899999999
Q ss_pred EEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCC
Q 018642 58 VVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL 137 (352)
Q Consensus 58 ii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~ 137 (352)
|++++|+++|+++|..|++. +|++++. ..|+|||++|||+++++. ++++++
T Consensus 292 i~~~~I~~~al~~L~~~~I~------av~~v~~---------------------~~LerIa~~tGa~ii~~l--~~l~~~ 342 (526)
T cd03339 292 ICQWGFDDEANHLLLQNGLP------AVRWVGG---------------------VEIELIAIATGGRIVPRF--EDLSPE 342 (526)
T ss_pred EeCCCCCHHHHHHHHHCCCE------EEEeCCH---------------------HHHHHHHHHhCCEEecch--hhCChh
Confidence 99999999999999988864 8888653 349999999999999998 899999
Q ss_pred CceeecEEEE---e--cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHH
Q 018642 138 MLGSCKKVKV---T--NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESR 212 (352)
Q Consensus 138 ~LG~a~~v~v---~--~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~ 212 (352)
+||+|++|+. + +++++++++|++ .++|||+|||+|+.+++
T Consensus 343 ~LG~~~~v~~~~ig~~~~~~~~i~g~~~-----------------------------------~~~~TIllrG~t~~~l~ 387 (526)
T cd03339 343 KLGKAGLVREISFGTTKDKMLVIEGCPN-----------------------------------SKAVTIFIRGGNKMIIE 387 (526)
T ss_pred hcccCceEEEEEecCCCcEEEEEECCCC-----------------------------------CCEEEEEEECCCHHHHH
Confidence 9999999974 2 457889998876 35799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHH
Q 018642 213 KKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEK 289 (352)
Q Consensus 213 E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~k 289 (352)
|.||+++||||++++++++| +|||||++|+++|..|++++.. ++++|+|+++|++||+.||++||+|||+|+. ++++
T Consensus 388 E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~ 467 (526)
T cd03339 388 EAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSE 467 (526)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999998 9999999999999999988655 7899999999999999999999999999999 9999
Q ss_pred HHcc----CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHh
Q 018642 290 LLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKL 344 (352)
Q Consensus 290 l~~~----~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i 344 (352)
++.. +..++|||+.+|+++||++.||||| +.||+++|+.|+++|++||.+|+++
T Consensus 468 l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp-~~vk~~~l~~A~e~a~~iL~iD~ii 525 (526)
T cd03339 468 VKARQVKEKNPHLGIDCLGRGTNDMKEQKVFET-LISKKQQILLATQVVKMILKIDDVI 525 (526)
T ss_pred HHHHHHhcCCCeEeeecCCCccCchhhcCceec-HHHHHHHHHHHHHHHHHHhhhceec
Confidence 9742 2457999999999999999999999 9999999999999999999999986
No 19
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3e-52 Score=429.02 Aligned_cols=276 Identities=15% Similarity=0.215 Sum_probs=247.1
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCC-------------CCCHHHHHHHHh-----------hcccccCCCcEEE
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENK-------------ILDKNIFAQAIG-----------AISCNEVKRPLLV 58 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~-------------i~~~~~i~~~l~-----------~~~~~~~~~plli 58 (352)
+-+|++.++-+.+++|+..++||+||+++++ +++++++.++++ . +.+.|.||||
T Consensus 210 lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~--i~~~g~~lvi 287 (519)
T TIGR02339 210 LVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDK--IADAGANVVF 287 (519)
T ss_pred eEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHH--HHhcCCcEEE
Confidence 3455655555555578999999999999998 788899999887 5 8888999999
Q ss_pred EecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCC
Q 018642 59 VANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLM 138 (352)
Q Consensus 59 i~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~ 138 (352)
++++|+++|+++|..+++ .+|++ .+++.|+|||++|||+++++. ++++++.
T Consensus 288 ~~~~I~~~al~~L~~~gI------~~v~~---------------------v~~~~L~rIa~~tGa~ii~~~--~~l~~~~ 338 (519)
T TIGR02339 288 CQKGIDDLAQHYLAKAGI------LAVRR---------------------VKKSDIEKLARATGAKIVSSI--KEITESD 338 (519)
T ss_pred ECCCccHHHHHHHHHCCC------EEEec---------------------CCHHHHHHHHHHhCCEEeCch--hhCChhh
Confidence 999999999999875553 56776 456779999999999999998 8899999
Q ss_pred ceeecEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHH
Q 018642 139 LGSCKKVKVTN---NEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKR 215 (352)
Q Consensus 139 LG~a~~v~v~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~e 215 (352)
||+|++|++.+ ++++++++|+++ ..+||+|||+|+.+++|.+
T Consensus 339 LG~~~~v~~~~ig~~~~~~~~~~~~~-----------------------------------~~~TI~lrG~t~~~l~E~~ 383 (519)
T TIGR02339 339 LGYAGLVEERKVGDDKMTFVEGCKNP-----------------------------------KAVTILLRGGTEHVVDELE 383 (519)
T ss_pred ccCCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEECCCHHHHHHHH
Confidence 99999998764 789999988653 4689999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHc
Q 018642 216 KRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG 292 (352)
Q Consensus 216 r~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~ 292 (352)
|+++||+|++|+++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+. ++.+|+.
T Consensus 384 r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~ 463 (519)
T TIGR02339 384 RSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRA 463 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999 9999999999999999988655 8899999999999999999999999999999 9999975
Q ss_pred c---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhh
Q 018642 293 Q---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQ 345 (352)
Q Consensus 293 ~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~ 345 (352)
. ++.++|||+.+|+++||++.||||| +.||+++|+.|+++|++||.+|++|.
T Consensus 464 ~h~~~~~~~Gid~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 464 KHEKGNKNAGINVFTGEIEDMLELGVIEP-LRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred HHHccCCceeEEcCCCCccchhhccceEc-HHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 3 3467999999999999999999999 99999999999999999999999874
No 20
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-52 Score=431.04 Aligned_cols=280 Identities=18% Similarity=0.200 Sum_probs=243.9
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCCH-------------HH-----------HHHHHhhcccccCCCcEEE
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDK-------------NI-----------FAQAIGAISCNEVKRPLLV 58 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~-------------~~-----------i~~~l~~~~~~~~~~plli 58 (352)
+-+|++.++-+.+++|+..++||+||++|++|+.. .+ +.+.++. +.+.|.||||
T Consensus 202 li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~--i~~~g~~lvi 279 (527)
T cd03335 202 LVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKK--ILAAGANVVL 279 (527)
T ss_pred eeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHH--HHHcCCCEEE
Confidence 34566665544455789999999999999988641 22 3355666 7888999999
Q ss_pred EecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC----CCC
Q 018642 59 VANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLY 134 (352)
Q Consensus 59 i~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~----~~~ 134 (352)
++++|+++|+++|..++ ++++++ .++++|+|||.+|||+++++..+ +++
T Consensus 280 ~~k~I~d~al~~L~~~~------I~~v~~---------------------v~~~~lerIa~~tGa~ii~~~~~l~~~~~~ 332 (527)
T cd03335 280 TTGGIDDMCLKYFVEAG------AMAVRR---------------------VKKEDLRRIAKATGATLVSTLANLEGEETF 332 (527)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEe---------------------CCHHHHHHHHHHhCCEEecChhhcCccccc
Confidence 99999999999999865 468887 45666999999999999998722 234
Q ss_pred CCCCceeecEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHH
Q 018642 135 IPLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAES 211 (352)
Q Consensus 135 ~~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l 211 (352)
++++||+|++|+ +++++++++.+|++ +++|||+|||+|+.++
T Consensus 333 ~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-----------------------------------~~~~TIllrG~t~~~l 377 (527)
T cd03335 333 DPSYLGEAEEVVQERIGDDELILIKGTKK-----------------------------------RSSASIILRGANDFML 377 (527)
T ss_pred CHhhCccCceEEEEEECCeEEEEEEcCCC-----------------------------------CCEEEEEEeCCcHHHH
Confidence 556899999998 67889999998865 4689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHH
Q 018642 212 RKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVE 288 (352)
Q Consensus 212 ~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~ 288 (352)
+|.||+++||+|++++++++| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.
T Consensus 378 ~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~ 457 (527)
T cd03335 378 DEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVA 457 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999 9999999999999999988655 8899999999999999999999999999999 999
Q ss_pred HHHcc---C--------CCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 289 KLLGQ---E--------NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 289 kl~~~---~--------~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
+|++. + ++++|||+.+|+++||++.||||| +.||+++|+.|+++|++||.+|+++...
T Consensus 458 ~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp-~~~k~~~i~~A~e~a~~iLrID~ii~~~ 526 (527)
T cd03335 458 KLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEP-TVSKIKSLKFATEAAITILRIDDLIKLN 526 (527)
T ss_pred HHHHHHHhcCCccccccCceEeEECCCCcccchhhccceec-HHHHHHHHHHHHHHHHHHHhhcceeecC
Confidence 99763 1 347999999999999999999999 9999999999999999999999998764
No 21
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-52 Score=429.40 Aligned_cols=273 Identities=16% Similarity=0.222 Sum_probs=236.1
Q ss_pred eecceecccccccCcCceeEeeCceeeeecCCCCCHH-------------HHH-----------HHHhhcccccCC----
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKN-------------IFA-----------QAIGAISCNEVK---- 53 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~-------------~i~-----------~~l~~~~~~~~~---- 53 (352)
.|++||.+||| +.+++||+||++|++|+..+ ++. ..++. +.+.+
T Consensus 211 v~~~~~~~~~~------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~--I~~~~~~~~ 282 (531)
T TIGR02347 211 VLDHGARHPDM------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKK--IIELKKKVC 282 (531)
T ss_pred EEecCcCCCCC------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHH--HHHhccccc
Confidence 46667766654 56889999999999876432 222 22333 43322
Q ss_pred -----Cc-EEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEee
Q 018642 54 -----RP-LLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVT 127 (352)
Q Consensus 54 -----~p-llii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis 127 (352)
.+ ||+++++|++.++++|..+++ +++++.+ +++|+|||++|||++++
T Consensus 283 ~~~~~~~~lvi~~k~I~~~a~~~L~~~~I------~~i~rv~---------------------~~~le~ia~~tGa~~i~ 335 (531)
T TIGR02347 283 GKSPDKGFVVINQKGIDPPSLDLLAKEGI------MALRRAK---------------------RRNMERLTLACGGEALN 335 (531)
T ss_pred ccCCCccEEEEeCCCccHHHHHHHHHCCc------eEEccCC---------------------HHHHHHHHHHhCCEEec
Confidence 23 777889999999999988664 6888754 45699999999999999
Q ss_pred ccCCCCCCCCCceeecEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEc
Q 018642 128 AASNSLYIPLMLGSCKKV---KVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVG 204 (352)
Q Consensus 128 ~~~~~~~~~~~LG~a~~v---~v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vg 204 (352)
+. +++++++||+|++| ++++++++++.+|+++ ++|||+||
T Consensus 336 ~l--~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TI~lr 378 (531)
T TIGR02347 336 SV--EDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP-----------------------------------KSCTILIK 378 (531)
T ss_pred cc--ccCCccccccceEEEEEEECCeEEEEEEcCCCC-----------------------------------CeEEEEEe
Confidence 98 89999999999999 6778899999988763 47999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018642 205 GATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGF 282 (352)
Q Consensus 205 G~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~ 282 (352)
|+|+.+++|+||+++||+|++++++++| +|||||++|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+
T Consensus 379 G~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~ 458 (531)
T TIGR02347 379 GPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGL 458 (531)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999 9999999999999999998655 8899999999999999999999999999
Q ss_pred CHH-HHHHHHcc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 283 QVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 283 d~~-vv~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
|+. ++.+|++. ++.++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|+++...
T Consensus 459 d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp-~~vk~~al~~A~e~a~~iLrID~ii~~~ 526 (531)
T TIGR02347 459 DAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDN-YRVKKQLIQSATVIASQLLLVDEVMRAG 526 (531)
T ss_pred CHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEc-HHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence 999 99999764 3357999999999999999999999 9999999999999999999999998653
No 22
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-52 Score=428.86 Aligned_cols=292 Identities=14% Similarity=0.195 Sum_probs=263.9
Q ss_pred CeecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchh-----hhhhhhhhcc
Q 018642 1 MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEE-----EVAGFVVTNE 75 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~-----~al~~l~~n~ 75 (352)
|.|++||++|||.+ |+..++||+||++|++|+ . . +...|+.|+++++++ +++..++.|+
T Consensus 211 iv~~~~~~~~~~~~---~~~~~~n~kIll~~~~Le----------~--~-~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~ 274 (522)
T TIGR02345 211 VAFKKTFSYAGFEQ---QPKKFANPKILLLNVELE----------L--K-AEKDNAEIRVEDVEDYQAIVDAEWAIIFRK 274 (522)
T ss_pred eEEecccCcccccc---CCceeccceEEEEecCcc----------c--C-ccccceEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56899999998864 556799999999999974 2 2 224689999999999 8999999999
Q ss_pred ccccc----eEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEE---e
Q 018642 76 TFSKT----KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---T 148 (352)
Q Consensus 76 ~~~~~----~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v---~ 148 (352)
+++.. ++++++.| ++|....||.++|++++++..++++++|+++|||+++++. +++++++||+|+.++. .
T Consensus 275 i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~--~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 275 LEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTT--SDLEADVLGTCALFEERQIG 351 (522)
T ss_pred HHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcch--hhCChhhccCCceEEEEEEC
Confidence 88744 78999998 9999999999999999999999999999999999999998 8999999999999975 3
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHH
Q 018642 149 NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAA 228 (352)
Q Consensus 149 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a 228 (352)
+++++++.||++ .++|||+|||+|+.+++|+||+++||+|++|++
T Consensus 352 ~~r~~~~~g~~~-----------------------------------~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (522)
T TIGR02345 352 SERYNYFTGCPH-----------------------------------AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRA 396 (522)
T ss_pred CeEEEEEEcCCC-----------------------------------CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887754 247999999999999999999999999999999
Q ss_pred Hhc-CccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc---CCCCeeeeC
Q 018642 229 MEE-GIIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDP 302 (352)
Q Consensus 229 ~~~-gvVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~ 302 (352)
+++ |+|||||++|++++.+|++++.. ++++|+|+++|++||+.||++||+|||+|+. ++.+|++. ++.++|||+
T Consensus 397 ~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~ 476 (522)
T TIGR02345 397 LKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDI 476 (522)
T ss_pred hcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeC
Confidence 998 59999999999999999988655 8899999999999999999999999999999 99999863 445799999
Q ss_pred CCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 303 PRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 303 ~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
.+|++.||++.||||| +.||+++|++|+++|++||.+|++|.+.
T Consensus 477 ~~~~i~d~~~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 477 NTEDIGDNFENFVWEP-LLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CCCcccchhhcCceEc-HHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999 9999999999999999999999999763
No 23
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-51 Score=425.07 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=249.0
Q ss_pred eecceecccccccC-c---CceeEeeCceeeeecCCCCC--------------HHHHHHH-----------HhhcccccC
Q 018642 2 KLNWGSMSRYFLYE-E---DQTLDLKNPFILIHENKILD--------------KNIFAQA-----------IGAISCNEV 52 (352)
Q Consensus 2 ~~~~G~~s~~f~~~-~---~~~~~l~~~~il~~d~~i~~--------------~~~i~~~-----------l~~~~~~~~ 52 (352)
.+++||++|+|+.+ + +|+..++||+||++|++|+. .+++..+ ++. +.+.
T Consensus 199 s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--I~~~ 276 (519)
T TIGR02341 199 SLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEK--ILKH 276 (519)
T ss_pred CcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH--HHHc
Confidence 57899999999987 4 68889999999999998763 2223222 233 7778
Q ss_pred CCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCC
Q 018642 53 KRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNS 132 (352)
Q Consensus 53 ~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~ 132 (352)
|..++++++.|++.++++|..++ ++++++|++++ |+|||++|||+++++. +
T Consensus 277 g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~~~~---------------------l~~ia~~tGa~ii~~~--~ 327 (519)
T TIGR02341 277 NINCFINRQLIYNYPEQLFADAG------VMAIEHADFEG---------------------IERLALVTGGEIVSTF--D 327 (519)
T ss_pred CCcEEEECCcCCHHHHHHHHHCC------cEEEecCCHHH---------------------HHHHHHHhCCEEeccc--c
Confidence 99999999999999999988765 57999998776 9999999999999998 8
Q ss_pred CCCCCCceeecEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchH
Q 018642 133 LYIPLMLGSCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTA 209 (352)
Q Consensus 133 ~~~~~~LG~a~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~ 209 (352)
++++++||+|++|+. ++++++++.+|++ +++|||+|||+|+.
T Consensus 328 ~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~ 372 (519)
T TIGR02341 328 HPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-----------------------------------GEACTIVLRGATQQ 372 (519)
T ss_pred cCCccccccCceEEEEEECCEEEEEEEcCCC-----------------------------------CCEEEEEEeCCCHH
Confidence 999999999999874 4568888888765 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-H
Q 018642 210 ESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-V 286 (352)
Q Consensus 210 ~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-v 286 (352)
+++|.||+++||++++|++++++ +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+. +
T Consensus 373 ~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~ 452 (519)
T TIGR02341 373 ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAEL 452 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999995 9999999999999999988655 8899999999999999999999999999999 9
Q ss_pred HHHHHcc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 287 VEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 287 v~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
+.+|++. +..++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|++|....
T Consensus 453 l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 453 VAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIES-YKVKRAVVSSAAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred HHHHHHHHHcCCCccceecCCCcccchhhccceEc-HHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 9999874 3557999999999999999999999 99999999999999999999999987654
No 24
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.9e-52 Score=427.88 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=236.9
Q ss_pred CeecceecccccccCcCceeEeeCceeeeec-----------CC--CCCHHHH-----------HHHHhhcccccCCCcE
Q 018642 1 MKLNWGSMSRYFLYEEDQTLDLKNPFILIHE-----------NK--ILDKNIF-----------AQAIGAISCNEVKRPL 56 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~~~~~~~l~~~~il~~d-----------~~--i~~~~~i-----------~~~l~~~~~~~~~~pl 56 (352)
|.|++||.+|+|.+ .++||+|++.+ .+ +++++++ .++++. +.+.|.||
T Consensus 223 i~i~~~~~~~~m~~------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~--i~~~g~~l 294 (532)
T TIGR02343 223 IIIDKDFSHPQMPK------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDD--IKKSGANI 294 (532)
T ss_pred EEEecCcCCCCCCe------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHH--HHHcCCCE
Confidence 34666777776654 44555555555 34 6677766 777888 99999999
Q ss_pred EEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCC
Q 018642 57 LVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIP 136 (352)
Q Consensus 57 lii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~ 136 (352)
||++++|+++|+++|..|++. +||+++..+ |+|||++|||+++++. +++++
T Consensus 295 vi~~~~I~~~al~~L~~~~i~------~v~~~~~~~---------------------l~~Ia~~tGa~~i~~l--~~~~~ 345 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQNDLP------AVRWVGGHE---------------------LELIAIATGGRIVPRF--EELSE 345 (532)
T ss_pred EEeCCCccHHHHHHHHHCCcE------EEEcCCHHH---------------------HHHHHHHhCCEEeccc--ccCCH
Confidence 999999999999999998864 788765333 9999999999999998 89999
Q ss_pred CCceeecEEEE---ec--ceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHH
Q 018642 137 LMLGSCKKVKV---TN--NEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAES 211 (352)
Q Consensus 137 ~~LG~a~~v~v---~~--~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l 211 (352)
++||+|++|+. +. ++++++.+|+++ ++|||+|||+|+.++
T Consensus 346 ~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~t~~~l 390 (532)
T TIGR02343 346 DKLGKAGLVREISFGTTKDRMLVIEQCKNS-----------------------------------KAVTIFIRGGNKMII 390 (532)
T ss_pred hHCcccceEEEEEecCCcceEEEEECCCCC-----------------------------------CEEEEEEECCCHHHH
Confidence 99999999974 22 478899988763 479999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHH
Q 018642 212 RKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVE 288 (352)
Q Consensus 212 ~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~ 288 (352)
+|.||+++||+++++++++++ +|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+. +++
T Consensus 391 ~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~ 470 (532)
T TIGR02343 391 EEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLS 470 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999995 9999999999999999988655 7899999999999999999999999999999 999
Q ss_pred HHHcc----CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhh
Q 018642 289 KLLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQ 345 (352)
Q Consensus 289 kl~~~----~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~ 345 (352)
++++. +..++|||+.+|.++||++.||||| +.||+++|+.|+++|++||.+|++|.
T Consensus 471 ~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp-~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 471 DLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFET-LIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred HHHHHHHhcCCCccCeeCCCCccccchhccCeec-HHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 99752 2457999999999999999999999 99999999999999999999999885
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-52 Score=425.73 Aligned_cols=283 Identities=16% Similarity=0.187 Sum_probs=243.9
Q ss_pred ecceecccccccC-cCceeEeeCceeeeecCCCC-------------C-----------HHHHHHHHhhcccccCCCcEE
Q 018642 3 LNWGSMSRYFLYE-EDQTLDLKNPFILIHENKIL-------------D-----------KNIFAQAIGAISCNEVKRPLL 57 (352)
Q Consensus 3 ~~~G~~s~~f~~~-~~~~~~l~~~~il~~d~~i~-------------~-----------~~~i~~~l~~~~~~~~~~pll 57 (352)
+-+|++.++-+.+ .+|+..++||+|++.++.++ + .+.+.++++. +.+.|.|||
T Consensus 200 li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~--i~~~g~~lv 277 (517)
T TIGR02342 200 LIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKK--IKKTGCNVL 277 (517)
T ss_pred EEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHH--HHhcCCCEE
Confidence 4456666555444 46777778888888776543 2 2346677777 999999999
Q ss_pred EEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCC
Q 018642 58 VVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL 137 (352)
Q Consensus 58 ii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~ 137 (352)
|++++|++++++.++.|.+.+ .+++||++ .++++|+|||++|||+++++. ++++++
T Consensus 278 i~~~~I~~~~l~~l~~~~l~~-~~I~av~~---------------------v~~~~LerIa~~tGa~ii~~~--~~l~~~ 333 (517)
T TIGR02342 278 LIQKSILRDAVNDLALHFLAK-MKIMVVKD---------------------IEREEVEFICKTIGCKPIASI--DHFTAD 333 (517)
T ss_pred EECCCcccccccHHHHHHHhh-CCceEEec---------------------CCHHHHHHHHHHHCCEEEcch--hhcCcc
Confidence 999999888888777777765 77889997 566779999999999999998 889999
Q ss_pred CceeecEEE-Ee--cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHH
Q 018642 138 MLGSCKKVK-VT--NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKK 214 (352)
Q Consensus 138 ~LG~a~~v~-v~--~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~ 214 (352)
+||+|++|+ ++ ++.++++.++++ ++++|||+|||+|+.+++|.
T Consensus 334 ~LG~~~~v~~~~~~~~~~~~i~~~~~----------------------------------~~~~~tIllrG~t~~~l~E~ 379 (517)
T TIGR02342 334 KLGSAELVEEVTTDGGKIIKITGIQN----------------------------------AGKTVTVLLRGSNKLVIDEA 379 (517)
T ss_pred cCcCCceEEEEEECCeEEEEEEccCC----------------------------------CCceEEEEEeCCcHHHHHHH
Confidence 999999998 43 446667777654 25789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 018642 215 RKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLL 291 (352)
Q Consensus 215 er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~ 291 (352)
||+++||+++++++++++ +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++++|+
T Consensus 380 er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~ 459 (517)
T TIGR02342 380 ERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELR 459 (517)
T ss_pred HHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999985 9999999999999999988655 8899999999999999999999999999999 999998
Q ss_pred cc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhc
Q 018642 292 GQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 346 (352)
Q Consensus 292 ~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~ 346 (352)
+. ++.++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|+++.+
T Consensus 460 ~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp-~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 460 NRHANGEKYAGISVRKGGITDMLEEEVLQP-LLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHcCCCccceecCCCCccchhhccceEc-HHHHHHHHHHHHHHHHHHhcccceeec
Confidence 63 4567999999999999999999999 999999999999999999999998754
No 26
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.9e-52 Score=427.32 Aligned_cols=274 Identities=18% Similarity=0.194 Sum_probs=242.1
Q ss_pred ecccccccC-c-CceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEE
Q 018642 7 SMSRYFLYE-E-DQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCF 84 (352)
Q Consensus 7 ~~s~~f~~~-~-~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~a 84 (352)
|.+||++++ + ++.+.+.+|..+....+.+ .+.+.++++. +.+.|.||||++++++++++++|..+ +++|
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e-~~~i~~~l~~--i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~a 304 (531)
T TIGR02346 234 FSCPLDTATTETKGTVLIHNAEELLNYSKGE-ENQIEAYIKA--IADSGVNVIVTGGSVGDMALHYCEKY------NIMV 304 (531)
T ss_pred EecCcCCCcccCceEEEECCHHHHHHHHHHH-HHHHHHHHHH--HHHcCCcEEEECCCcCHHHHHHHHHC------CcEE
Confidence 777777776 4 5666777777766444333 5678899999 99999999999999999999987754 4689
Q ss_pred ecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEEe---cceEEEEcCCCCh
Q 018642 85 VKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGGSGNQ 161 (352)
Q Consensus 85 vk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~ 161 (352)
|++|+++| |+|||.+|||+++++. +++++++||+|++|++. +++++++.++..
T Consensus 305 v~~~~~~~---------------------l~~Ia~~tGa~ii~~l--~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~- 360 (531)
T TIGR02346 305 LKIPSKFE---------------------LRRLCKTVGATPLARL--GAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG- 360 (531)
T ss_pred EecCCHHH---------------------HHHHHHHHCCEEeccc--ccCCHhHccccceEEEEEECCEEEEEEEccCC-
Confidence 99999887 9999999999999998 88999999999999864 457888876542
Q ss_pred hhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHH
Q 018642 162 VYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVA 240 (352)
Q Consensus 162 ~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaa 240 (352)
.+++|||+|||+|+.+++|+||+++||+|++|+++++| ||||||++
T Consensus 361 ---------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~ 407 (531)
T TIGR02346 361 ---------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGAT 407 (531)
T ss_pred ---------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHH
Confidence 26789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc---CCCCeeeeCCCCc--ccchhhC
Q 018642 241 LLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDE--YVDAVKS 313 (352)
Q Consensus 241 el~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~~~g~--~~dm~~~ 313 (352)
|+++|.+|++++.. ++++|+|+++|++||+.||++||+|||+|+. ++.+|+.. ++.++|||+.+|+ ++||++.
T Consensus 408 e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~ 487 (531)
T TIGR02346 408 EIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEA 487 (531)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhc
Confidence 99999999988655 7899999999999999999999999999999 99999764 3557999999999 5999999
Q ss_pred CcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 314 AIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 314 GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
||||| +.||+++|++|+++|++||.+|++|...
T Consensus 488 gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (531)
T TIGR02346 488 GIYDN-LATKKWAIKLATEAAVTVLRVDQIIMAK 520 (531)
T ss_pred CceEc-HHHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 99999 9999999999999999999999988765
No 27
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-51 Score=424.71 Aligned_cols=247 Identities=15% Similarity=0.201 Sum_probs=223.6
Q ss_pred HHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHH
Q 018642 38 NIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDI 117 (352)
Q Consensus 38 ~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledi 117 (352)
+++.++++. +.+.|.||||++++|++++++.++.|.+.+ .+++||++ +++++|+||
T Consensus 259 ~~i~~~v~~--i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~~---------------------~~~~~LerI 314 (515)
T cd03338 259 KYILNMCKK--IKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVKD---------------------IEREEIEFI 314 (515)
T ss_pred HHHHHHHHH--HHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEec---------------------CCHHHHHHH
Confidence 457777888 999999999999999888888777777774 77889996 567779999
Q ss_pred HHHhCCeEeeccCCCCCCCCCceeecEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhh
Q 018642 118 AILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQML 194 (352)
Q Consensus 118 a~~tG~~iis~~~~~~~~~~~LG~a~~v~v~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l 194 (352)
|++|||+++++. +++++++||+|++|++. +++++++.++.+
T Consensus 315 a~~tGa~ii~sl--~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~---------------------------------- 358 (515)
T cd03338 315 CKTIGCKPVASI--DHFTEDKLGSADLVEEVSLGDGKIVKITGVKN---------------------------------- 358 (515)
T ss_pred HHHHCCEEeccc--ccCCHhhCCCCceEEEEEECCeEEEEEEecCC----------------------------------
Confidence 999999999998 88999999999999864 446788887653
Q ss_pred cCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHH
Q 018642 195 SSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMP 272 (352)
Q Consensus 195 ~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~p 272 (352)
++++|||+|||+|+.+++|+||+++||+|++++++++| +|||||++|+++|.+|++++.. ++++|+|+++|++||+.|
T Consensus 359 ~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~i 438 (515)
T cd03338 359 PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVI 438 (515)
T ss_pred CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 25789999999999999999999999999999999999 9999999999999999988655 789999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHcc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhh
Q 018642 273 LYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQ 345 (352)
Q Consensus 273 p~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~ 345 (352)
|++||+|||+|+. ++.+|++. ++.++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|++|.
T Consensus 439 p~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp-~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 439 PYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQP-LLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceec-HHHHHHHHHHHHHHHHHHhccchhhc
Confidence 9999999999999 99999763 3568999999999999999999999 99999999999999999999999875
No 28
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.1e-51 Score=420.47 Aligned_cols=281 Identities=16% Similarity=0.199 Sum_probs=246.1
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCC-------------HHHHHHHHhh--------cc-cccCCCcEEEEe
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILD-------------KNIFAQAIGA--------IS-CNEVKRPLLVVA 60 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~-------------~~~i~~~l~~--------~~-~~~~~~pllii~ 60 (352)
+-+||+.++-+++++|+..++||+||+++++|+. ++++.++++. ++ +.+.|..++++.
T Consensus 210 lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~ 289 (525)
T TIGR02344 210 VLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITE 289 (525)
T ss_pred cccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 4568887777778889999999999999998865 4778887762 12 667665555566
Q ss_pred cCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCce
Q 018642 61 NDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLG 140 (352)
Q Consensus 61 ~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG 140 (352)
+.+++.++++|..++ ++|+++ +++++|+|||++|||+++++. +++++++||
T Consensus 290 k~I~dla~~~l~~~~------I~av~~---------------------v~~~~LerIa~~tGa~ii~~l--~~l~~~~lG 340 (525)
T TIGR02344 290 KGVSDLAQHYLLKAN------ISAIRR---------------------VRKTDNNRIARACGATIVNRP--EELRESDVG 340 (525)
T ss_pred CCccHHHHHHHhHCC------ceEEec---------------------CCHHHHHHHHHHhCCeEecch--hhCCHhhcC
Confidence 799999999977654 567776 566779999999999999998 899999999
Q ss_pred e-ecEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHH
Q 018642 141 S-CKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRK 216 (352)
Q Consensus 141 ~-a~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er 216 (352)
+ |+.|++ ++++++++++|+++ .+|||+|||+|+.+++|.||
T Consensus 341 ~~~~~v~~~~ig~~~~~~~~g~~~~-----------------------------------~~~TIlLrG~t~~~l~E~er 385 (525)
T TIGR02344 341 TGCGLFEVKKIGDEYFTFFTECKDP-----------------------------------KACTILLRGASKDVLNEIER 385 (525)
T ss_pred CcCCEEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEEcCCHHHHHHHHH
Confidence 9 998887 56789999988663 47999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc
Q 018642 217 RATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ 293 (352)
Q Consensus 217 ~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~ 293 (352)
+++||+++++++++++ +|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.+|++.
T Consensus 386 ~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~ 465 (525)
T TIGR02344 386 NLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465 (525)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999986 9999999999999999988655 8899999999999999999999999999999 99999863
Q ss_pred ---C-CCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 294 ---E-NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 294 ---~-~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
+ ..++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|++|.+..
T Consensus 466 h~~~~~~~~Gid~~~g~~~d~~~~gV~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 466 HAQEGNCTWGIDGETGKIVDMKEKGIWEP-LAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred HHccCCCeEeEECCCCccccchhccceec-HHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 2 457999999999999999999999 99999999999999999999999987754
No 29
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.8e-51 Score=420.00 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=241.8
Q ss_pred cceecccccccCcCceeEeeCceeeeecCCCCCHH------------------------HHHHHHhhcccccCCCcEEEE
Q 018642 4 NWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKN------------------------IFAQAIGAISCNEVKRPLLVV 59 (352)
Q Consensus 4 ~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~------------------------~i~~~l~~~~~~~~~~pllii 59 (352)
-+|++.++-+.+++|+..++||+|++++++|+..+ .+.+.++. +.+.|.+||++
T Consensus 207 i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~--I~~~g~~lvi~ 284 (536)
T TIGR02340 207 VKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKK--ILKAGANVVLT 284 (536)
T ss_pred EEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHH--HHHcCCCEEEe
Confidence 34555444444458899999999999999886443 23355555 77889999999
Q ss_pred ecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC----CCCC
Q 018642 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYI 135 (352)
Q Consensus 60 ~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~----~~~~ 135 (352)
.+++++.|+++|..+++ ++++++ ++++|+|||++|||+++++..+ ++++
T Consensus 285 ~k~I~~~a~~~L~k~~I------~~i~rv---------------------~~~~LerIa~~tGa~ii~~~~~l~~~~~~~ 337 (536)
T TIGR02340 285 TGGIDDMCLKYFVEAGA------MGVRRC---------------------KKEDLKRIAKATGGTLVSTLADLEGEETFD 337 (536)
T ss_pred CCCCcHHHHHHHHHCCc------EEEecC---------------------CHHHHHHHHHHhCCEEecchhhcCcccccc
Confidence 99999999999988774 678874 4566999999999999999732 3455
Q ss_pred CCCceeecEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHH
Q 018642 136 PLMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESR 212 (352)
Q Consensus 136 ~~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~ 212 (352)
+++||+|++|+ +++++|+++++++++ ++|||+|||+|+.+++
T Consensus 338 ~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~TIlirG~t~~~l~ 382 (536)
T TIGR02340 338 ASYLGFADEVVEERIADDECILIKGTKGR-----------------------------------KSASIILRGANDFMLD 382 (536)
T ss_pred ccccccCceEEEEEECCeEEEEEEcCCCC-----------------------------------CEEEEEEeCCcHHHHH
Confidence 67799999998 778899999987653 4799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHH
Q 018642 213 KKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEK 289 (352)
Q Consensus 213 E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~k 289 (352)
|++|+++||+|++|+++++| ||||||++|+++|..|++++.. ++++++|+++|++||+.||++||+|||+|+. ++.+
T Consensus 383 E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~ 462 (536)
T TIGR02340 383 EMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAK 462 (536)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999 9999999999999999988654 8899999999999999999999999999999 9999
Q ss_pred HHccC-----------CCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 290 LLGQE-----------NPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 290 l~~~~-----------~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
|++.+ +.++|||+.+|+++||++.||||| +.||.++|+.|+++|++||.+|+++...
T Consensus 463 l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp-~~~k~~~l~~A~e~a~~iL~ID~ii~~~ 530 (536)
T TIGR02340 463 LRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEP-AVSKVKSLKFATEAAITILRIDDLIKLN 530 (536)
T ss_pred HHHHHHccCcccccccCceEeEEccCCccccchhccceec-HHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 97621 346999999999999999999999 9999999999999999999999998765
No 30
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-50 Score=415.37 Aligned_cols=277 Identities=15% Similarity=0.201 Sum_probs=244.2
Q ss_pred CeecceecccccccCcCceeEeeCceeeeecCCC-------------CCHHH-----------HHHHHhhcccccCCCcE
Q 018642 1 MKLNWGSMSRYFLYEEDQTLDLKNPFILIHENKI-------------LDKNI-----------FAQAIGAISCNEVKRPL 56 (352)
Q Consensus 1 ~~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i-------------~~~~~-----------i~~~l~~~~~~~~~~pl 56 (352)
+.|++||.+|||.+ |+..++||+||++++++ +++.+ +.+.++. +.+.|.++
T Consensus 210 iv~~k~~~~~~~~~---~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~--i~~~g~~v 284 (522)
T cd03340 210 VAFKKTFSYAGFEQ---QPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEK--IVKSGANV 284 (522)
T ss_pred EEEecccCcccccc---CCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHH--HHhcCCCE
Confidence 46888888888754 55669999999999974 44444 4455555 77889999
Q ss_pred EEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCC
Q 018642 57 LVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIP 136 (352)
Q Consensus 57 lii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~ 136 (352)
|++.+.|++.++++|..+++ ++++.. ++++|++||++|||+++++. +++++
T Consensus 285 vl~~~~i~d~a~~~l~~~~I------~~~~~v---------------------~~~~l~rIa~~tGa~ii~~l--~~l~~ 335 (522)
T cd03340 285 VLSKLPIGDLATQYFADRDI------FCAGRV---------------------PEEDLKRVAQATGGSIQTTV--SNITD 335 (522)
T ss_pred EEeCCCCcHHHHHHHHHCCc------EEEEeC---------------------CHHHHHHHHHHHCCEEeecc--ccCCc
Confidence 99999999999999887764 467764 45569999999999999998 89999
Q ss_pred CCceeecEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHH
Q 018642 137 LMLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRK 213 (352)
Q Consensus 137 ~~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E 213 (352)
++||+|++|+ +++++++++.+|.. .+.+||++||+|+..++|
T Consensus 336 ~~LG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~~l~E 380 (522)
T cd03340 336 DVLGTCGLFEERQVGGERYNIFTGCPK-----------------------------------AKTCTIILRGGAEQFIEE 380 (522)
T ss_pred cccccceEEEEEEECCEEEEEEECCCC-----------------------------------CceEEEEEECCCHHHHHH
Confidence 9999999998 56778999998865 247999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHH
Q 018642 214 KRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKL 290 (352)
Q Consensus 214 ~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl 290 (352)
.||+++||++++++++++| +|||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+. ++.+|
T Consensus 381 ~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l 460 (522)
T cd03340 381 AERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKL 460 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999998 9999999999999999998655 8899999999999999999999999999999 99999
Q ss_pred Hcc---CC-CCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 291 LGQ---EN-PDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 291 ~~~---~~-~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
++. ++ .++|||+.+|+++||++.||||| +.||+++|++|+++|++||.+|++|.+.
T Consensus 461 ~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp-~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 461 RQKHAQGGGKWYGVDINNEGIADNFEAFVWEP-SLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred HHHHHccCCCeeeeeCCCCcccchhhcCceEc-HHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 874 33 57999999999999999999999 9999999999999999999999999764
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-50 Score=409.90 Aligned_cols=262 Identities=17% Similarity=0.207 Sum_probs=234.3
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceE
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKL 82 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v 82 (352)
+-+|++.++.. ..+...++||+|++++++++. |.||||++++|+++++++|.. .++
T Consensus 199 lv~Giv~~~~~--~~~~~~~~n~~Ili~~~~Le~----------------g~~lvi~~~~I~d~al~~l~~------~~I 254 (472)
T cd03341 199 VVRGMVFKREP--EGSVKRVKKAKVAVFSCPFDI----------------GVNVIVAGGSVGDLALHYCNK------YGI 254 (472)
T ss_pred EEeeEEEcccc--CCCceeccCCcEEEEeccccC----------------CCeEEEECCCCCHHHHHHHHH------CCe
Confidence 45677766432 345588999999999999876 679999999999999999653 557
Q ss_pred EEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEEec---ceEEEEcCCC
Q 018642 83 CFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN---NEMIIHGGSG 159 (352)
Q Consensus 83 ~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v~~---~~~~~i~~~~ 159 (352)
++||+|++.+ |+|||++|||+++++. +++++++||+|++|++.+ ++++++.+++
T Consensus 255 ~av~~~~~~~---------------------Le~Ia~~tGa~ii~~~--~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~ 311 (472)
T cd03341 255 MVIKINSKFE---------------------LRRLCRTVGATPLPRL--GAPTPEEIGYCDSVYVEEIGDTKVVVFRQNK 311 (472)
T ss_pred EEEEeCCHHH---------------------HHHHHHHhCCEEeccc--ccCCHhHCCCceEEEEEEECCeeEEEEEccC
Confidence 8999987555 9999999999999998 888999999999998764 7899998875
Q ss_pred ChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccch
Q 018642 160 NQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGG 238 (352)
Q Consensus 160 ~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGG 238 (352)
+. +++|||+|||+|+.+++|.||+++||++++|+++++| +|||||
T Consensus 312 ~~----------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG 357 (472)
T cd03341 312 ED----------------------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAG 357 (472)
T ss_pred CC----------------------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcC
Confidence 31 4689999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHc---cCCCCeeeeCCCC--cccchh
Q 018642 239 VALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLG---QENPDLEYDPPRD--EYVDAV 311 (352)
Q Consensus 239 aael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~---~~~~~~G~d~~~g--~~~dm~ 311 (352)
++|++++..|++++.. ++++++|+++|++||+.||++||+|||+|+. ++.+|+. +++.++|||+.+| +++||+
T Consensus 358 ~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~ 437 (472)
T cd03341 358 ATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAK 437 (472)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChh
Confidence 9999999999988654 7899999999999999999999999999999 9999975 3356799999999 999999
Q ss_pred hCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhc
Q 018642 312 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQR 346 (352)
Q Consensus 312 ~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~ 346 (352)
+.||||| +.||+++|++|+++|++||.+|++|.+
T Consensus 438 ~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 438 EAGIFDH-LATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred hccceec-HHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999 999999999999999999999998754
No 32
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-49 Score=404.26 Aligned_cols=259 Identities=16% Similarity=0.192 Sum_probs=232.8
Q ss_pred eecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccce
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTK 81 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~ 81 (352)
.+-+|++.++-+.+++|+.+++||+||+++++|+. |||++++|+++|+++|..|+
T Consensus 209 ~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~-------------------lvi~~k~I~d~al~~L~~~~------ 263 (480)
T cd03337 209 RVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY-------------------LVITEKGVSDLAQHYLVKAG------ 263 (480)
T ss_pred ccccceEEeccCCCCCCCcEecCCCEEEEecCcce-------------------EEEeCCCccHHHHHHHHHCC------
Confidence 35578888777777889999999999999998765 88899999999999999875
Q ss_pred EEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceee-cEEEE---ecceEEEEcC
Q 018642 82 LCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSC-KKVKV---TNNEMIIHGG 157 (352)
Q Consensus 82 v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a-~~v~v---~~~~~~~i~~ 157 (352)
+++|++ +++++|+|||++|||+++++. +++++++||+| +.++. ++++++++++
T Consensus 264 I~~v~~---------------------v~~~~L~rIa~~tGa~ii~~~--~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~ 320 (480)
T cd03337 264 ITALRR---------------------VRKTDNNRIARACGATIVNRP--EELTESDVGTGAGLFEVKKIGDEYFTFITE 320 (480)
T ss_pred cEEEEe---------------------CCHHHHHHHHHHHCCEEecch--hhCCHHHcCCcccEEEEEEeCCeEEEEEEc
Confidence 578887 456669999999999999998 89999999995 44443 4567899988
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-cccc
Q 018642 158 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPG 236 (352)
Q Consensus 158 ~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpG 236 (352)
|+++ ++|||+|||+|+.+++|.||+++||+++++++++++ +|||
T Consensus 321 ~~~~-----------------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpG 365 (480)
T cd03337 321 CKDP-----------------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPG 365 (480)
T ss_pred CCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeC
Confidence 8662 579999999999999999999999999999999995 9999
Q ss_pred chHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc---C-CCCeeeeCCCCcccch
Q 018642 237 GGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---E-NPDLEYDPPRDEYVDA 310 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~---~-~~~~G~d~~~g~~~dm 310 (352)
||++||++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+. ++.+|++. + ..++|+|+.+|+++||
T Consensus 366 GGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~ 445 (480)
T cd03337 366 GGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDM 445 (480)
T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccc
Confidence 999999999999987665 8899999999999999999999999999999 99999864 2 4579999999999999
Q ss_pred hhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHh
Q 018642 311 VKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKL 344 (352)
Q Consensus 311 ~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i 344 (352)
++.||||| +.||+++|++|+++|++||.+|+++
T Consensus 446 ~~~gV~dp-~~vk~~~l~~A~e~a~~iL~id~ii 478 (480)
T cd03337 446 KELGIWDP-LAVKAQTYKTAIEAACMLLRIDDIV 478 (480)
T ss_pred hhccCeEc-HHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999999 9999999999999999999999876
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.8e-48 Score=390.79 Aligned_cols=252 Identities=28% Similarity=0.378 Sum_probs=223.6
Q ss_pred eecceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEec-Cchhhhhhhhhhccccccc
Q 018642 2 KLNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVAN-DVEEEVAGFVVTNETFSKT 80 (352)
Q Consensus 2 ~~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~-~i~~~al~~l~~n~~~~~~ 80 (352)
.|++||.+|+ |+..++||+||+++++|+. ||+++ +|+++|+++|..++
T Consensus 202 ~~~~~~~~~~------m~~~~~n~~Ili~~~~Le~--------------------lIi~~~~I~~~al~~L~~~~----- 250 (464)
T cd00309 202 VFDKGYLSPY------MPKRLENAKILLLDCKLEY--------------------VVIAEKGIDDEALHYLAKLG----- 250 (464)
T ss_pred EEecCCCCCC------CceeecCceEEEEecCcce--------------------EEecCCCcCHHHHHHHHHCC-----
Confidence 4556666655 4789999999999999977 55555 69999999988744
Q ss_pred eEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEEe---cceEEEEcC
Q 018642 81 KLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVT---NNEMIIHGG 157 (352)
Q Consensus 81 ~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v~---~~~~~~i~~ 157 (352)
+++|++. +++.|+|||.+|||+++++. +++++++||+|++|++. +.+++++.+
T Consensus 251 -I~~v~~~---------------------~~~~L~~Ia~~tGa~ii~~~--~~~~~~~lG~~~~v~~~~~g~~~~~~~~~ 306 (464)
T cd00309 251 -IMAVRRV---------------------RKEDLERIAKATGATIVSRL--EDLTPEDLGTAGLVEETKIGDEKYTFIEG 306 (464)
T ss_pred -eEEEEeC---------------------CHHHHHHHHHHhCCEEeccc--ccCCcccCccccEEEEEEEcCeeEEEEEe
Confidence 6799984 45669999999999999998 88999999999999864 346777777
Q ss_pred CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-cccc
Q 018642 158 SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPG 236 (352)
Q Consensus 158 ~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpG 236 (352)
+.. +++|||+|||+|+.+++|+||+++||+++++++++++ +|||
T Consensus 307 ~~~-----------------------------------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpG 351 (464)
T cd00309 307 CKG-----------------------------------GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPG 351 (464)
T ss_pred cCC-----------------------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 643 4689999999999999999999999999999999995 9999
Q ss_pred chHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccC---CCCeeeeCCCCcccchh
Q 018642 237 GGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQE---NPDLEYDPPRDEYVDAV 311 (352)
Q Consensus 237 GGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~---~~~~G~d~~~g~~~dm~ 311 (352)
||++|+++|..|++++.. ++++|+++++|++||+.||++|++|||+|+. ++.+|++.+ ..++|+|..+|++.||+
T Consensus 352 GGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~ 431 (464)
T cd00309 352 GGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMK 431 (464)
T ss_pred CcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehh
Confidence 999999999999988765 8999999999999999999999999999999 999998643 34789999999999999
Q ss_pred hCCcccCchhHHHHHHHHHHHHHHHHHhhHhHh
Q 018642 312 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKL 344 (352)
Q Consensus 312 ~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i 344 (352)
+.||||| +.||+++|+.|+++|++||.+|++|
T Consensus 432 ~~gI~dp-~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 432 EAGIIDP-LKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred hccCeec-HHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999 9999999999999999999999886
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-46 Score=382.91 Aligned_cols=278 Identities=22% Similarity=0.323 Sum_probs=252.4
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCCHHH-----------------------HHHHHhhcccccCCCcEEEE
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNI-----------------------FAQAIGAISCNEVKRPLLVV 59 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~-----------------------i~~~l~~~~~~~~~~pllii 59 (352)
+.+|++.++.+.+.+|+..+++|+|++++++|+.... +.++++. +.+.+.|+||+
T Consensus 174 li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--i~~~~~~lIi~ 251 (485)
T PF00118_consen 174 LINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEK--IINLGVNLIIS 251 (485)
T ss_dssp EESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHH--HHTTTSSEEEE
T ss_pred cccceeeeccccccccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccce--Eeeeccceeee
Confidence 4468887777766788889999999999999988777 9999999 99999999999
Q ss_pred ecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCc
Q 018642 60 ANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLML 139 (352)
Q Consensus 60 ~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~L 139 (352)
+++|++.++++|..|++. +++. .+++.|++|+.+||++++++. ++++++++
T Consensus 252 ~~~i~~~~l~~l~~~~I~------~i~~---------------------v~~~~l~~i~~~tg~~ii~~~--~~l~~~~l 302 (485)
T PF00118_consen 252 QKSIDDEALQYLNKNGIL------VIRR---------------------VSKEDLERIARATGASIISSL--DDLSDEDL 302 (485)
T ss_dssp SSEBTHHHHHHHHHCTHE------EESS---------------------EHHHHHHHHHHHHTSBEBSSC--GGSTGGGS
T ss_pred ecccccccchhhhhhhhh------cccc---------------------chHHHHHhhhcccCCcEeccc--ccccchhh
Confidence 999999999999988864 6666 567779999999999999998 88888889
Q ss_pred eeecEE---EEecceEEEEcC--CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHH
Q 018642 140 GSCKKV---KVTNNEMIIHGG--SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKK 214 (352)
Q Consensus 140 G~a~~v---~v~~~~~~~i~~--~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~ 214 (352)
|+|+.+ ++++++++++.+ +. .++.+||+|||+|+.+++|.
T Consensus 303 G~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~g~t~~~l~e~ 347 (485)
T PF00118_consen 303 GFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLRGPTEFELEER 347 (485)
T ss_dssp EEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEEESSHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEeccccchhHHHH
Confidence 999999 667889999984 32 36789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 018642 215 RKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLL 291 (352)
Q Consensus 215 er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~ 291 (352)
||+++||+++++++++++ +|||||++|++++.+|+++... ++++++++++|++||+.||++|++|||+|+. ++++++
T Consensus 348 ~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~ 427 (485)
T PF00118_consen 348 ERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLK 427 (485)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhH
Confidence 999999999999999977 9999999999999999887655 7899999999999999999999999999999 999998
Q ss_pred c--cCCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhcc
Q 018642 292 G--QENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQ 347 (352)
Q Consensus 292 ~--~~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~ 347 (352)
. +.++++|||..+|++.||.+.||||| +.||+++++.|+++|++||.+|++|.+.
T Consensus 428 ~~h~~~~~~g~d~~~~~i~~~~~~gi~dp-~~~k~~~l~~A~~~a~~iL~id~iI~~~ 484 (485)
T PF00118_consen 428 SFHNNGNNYGIDLDTGEIVDMKEAGILDP-LLVKISALKSAVEIASLILRIDEIIMAK 484 (485)
T ss_dssp HHHHSTTTEEEETTTTEEEETTTTTCEEE-HHHHHHHHHHHHHHHHHHHTEEEEEEES
T ss_pred hhhccccccCcCccCCceeccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 34569999999999999999999999 9999999999999999999999988754
No 35
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-45 Score=349.89 Aligned_cols=266 Identities=15% Similarity=0.237 Sum_probs=241.5
Q ss_pred cCceeEeeCceeeeecCC-------------CCCHHHHHHH-----------HhhcccccCCCcEEEEecCchhhhhhhh
Q 018642 16 EDQTLDLKNPFILIHENK-------------ILDKNIFAQA-----------IGAISCNEVKRPLLVVANDVEEEVAGFV 71 (352)
Q Consensus 16 ~~~~~~l~~~~il~~d~~-------------i~~~~~i~~~-----------l~~~~~~~~~~pllii~~~i~~~al~~l 71 (352)
++++..|.||+||+++-. +.+++++..+ |+. +.++|.++|+.-=.|.|.|.+|+
T Consensus 226 EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~k--i~~sGAnVVLSkLpIGD~ATQyF 303 (543)
T KOG0361|consen 226 EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDK--IHESGANVVLSKLPIGDLATQYF 303 (543)
T ss_pred hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHH--HHhcCCeEEEecccchHHHHHHh
Confidence 889999999999999874 3455554444 555 88999999998889999999999
Q ss_pred hhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEE---Ee
Q 018642 72 VTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VT 148 (352)
Q Consensus 72 ~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~---v~ 148 (352)
+.+.+. ||=|. .+++|.|...+|||++.++. .++.++.||.|+.++ ++
T Consensus 304 AdrdiF-----CAGRV----------------------~~eDl~Rv~~acGGsi~tt~--~~i~~~~LG~C~~FeE~QvG 354 (543)
T KOG0361|consen 304 ADRDIF-----CAGRV----------------------PEEDLNRVMQACGGSIQTTV--SDIKEEVLGTCALFEERQVG 354 (543)
T ss_pred hccCce-----ecCcC----------------------CHHHHHHHHHhcCcchhhhh--hhcchhhcchhhhHHHHhhc
Confidence 987764 45444 35779999999999999998 899999999999996 57
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHH
Q 018642 149 NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAA 228 (352)
Q Consensus 149 ~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a 228 (352)
.++|.+|.||+. .++||+++||+-++.++|.+|++|||++++|.|
T Consensus 355 ~eRyN~Fegcp~-----------------------------------aktcTliLRGgaeqfieE~eRSlHDAImIVrra 399 (543)
T KOG0361|consen 355 GERYNLFEGCPK-----------------------------------AKTCTLILRGGAEQFIEETERSLHDAIMIVRRA 399 (543)
T ss_pred chhhhhhcCCCc-----------------------------------cceeEEEEeccHHHHHHHHhhhhhhHHHHHHHH
Confidence 889999999976 357999999999999999999999999999999
Q ss_pred HhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc---CCCCeeeeC
Q 018642 229 MEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ---ENPDLEYDP 302 (352)
Q Consensus 229 ~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~ 302 (352)
++.. +|+|||+.||++|+.|++|+.. .+++|+-+.+|++|||+||||||+|||+|.. +++|||.. +..|+|+|.
T Consensus 400 lkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi 479 (543)
T KOG0361|consen 400 LKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDI 479 (543)
T ss_pred hccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeee
Confidence 9987 9999999999999999999877 8999999999999999999999999999999 99999864 678999999
Q ss_pred CCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 303 PRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 303 ~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
.++.+.|+++.+|||| ..||.+++.+|+|+|++||++||+|++-+
T Consensus 480 ~~e~i~dn~~~~VwEP-~~VK~Nai~aateAa~lIlsvDeTikn~~ 524 (543)
T KOG0361|consen 480 NTEGIADNFEKFVWEP-SIVKINAITAATEAACLILSVDETIKNPK 524 (543)
T ss_pred cccchhhHHHhhccCh-HHHHHHHHHHHHHhhhheEehhhhhcCCc
Confidence 9999999999999999 99999999999999999999999999876
No 36
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-44 Score=339.29 Aligned_cols=247 Identities=17% Similarity=0.194 Sum_probs=228.6
Q ss_pred CHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHH
Q 018642 36 DKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMR 115 (352)
Q Consensus 36 ~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Le 115 (352)
++-+|..+++. ++++|.+|+|++|+|+|||.|+|..|++. |||+.|--+ +|
T Consensus 140 ~~~ef~emi~~--vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVGGpE---------------------iE 190 (400)
T KOG0357|consen 140 DPFEFEEMIQQ--IKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVGGPE---------------------IE 190 (400)
T ss_pred ccccHHHHHHH--HHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecCCcc---------------------eE
Confidence 33347788888 99999999999999999999999999987 999988777 99
Q ss_pred HHHHHhCCeEeeccCCCCCCCCCceeecEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 018642 116 DIAILTGGRVVTAASNSLYIPLMLGSCKKVKV-----TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEER 190 (352)
Q Consensus 116 dia~~tG~~iis~~~~~~~~~~~LG~a~~v~v-----~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eR 190 (352)
-||++|||+++.++ ++++++.||+|+.|.. ++|++.+++.|+++
T Consensus 191 liAiaT~grIVprF--~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns----------------------------- 239 (400)
T KOG0357|consen 191 LIAIATGGRIVPRF--SELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS----------------------------- 239 (400)
T ss_pred EEEeecCCeeeccH--hhhCHhhccccceEEEEecccccceEEEEEecCCC-----------------------------
Confidence 99999999999999 9999999999999964 58899999999984
Q ss_pred HHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHH
Q 018642 191 LQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHA 268 (352)
Q Consensus 191 l~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~A 268 (352)
+++||.|||++..+++|.||++|||||++|+.+++. +|+|||++|+.||-.+.+-+.. +|.+||++++|++|
T Consensus 240 ------kaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~a 313 (400)
T KOG0357|consen 240 ------KAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADA 313 (400)
T ss_pred ------ceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998 9999999999999999887776 89999999999999
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHcc----CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhH
Q 018642 269 VKMPLYTIASTAGFQVS-VVEKLLGQ----ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEK 343 (352)
Q Consensus 269 L~~pp~~La~NAG~d~~-vv~kl~~~----~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~ 343 (352)
|+.+|..||+|+|++|+ .++++++. .++++|+|+....--||.+.+++|| +.-|++.+..|+.++.|||-+|++
T Consensus 314 le~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~-l~~KkqQi~laTQ~vrMiLKiddv 392 (400)
T KOG0357|consen 314 LESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIET-LIGKKQQISLATQMVRMILKIDDV 392 (400)
T ss_pred HhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHH-hhhhHHHHHHHHHHHHHhhhccce
Confidence 99999999999999999 99999764 5789999998877889999999999 999999999999999999999998
Q ss_pred hhccCC
Q 018642 344 LQRQKG 349 (352)
Q Consensus 344 i~~~~~ 349 (352)
......
T Consensus 393 ~~~~~~ 398 (400)
T KOG0357|consen 393 RKPGES 398 (400)
T ss_pred ecCCCC
Confidence 876554
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-41 Score=319.61 Aligned_cols=278 Identities=16% Similarity=0.218 Sum_probs=242.3
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCC--------------CHHH-----------HHHHHhhcccccCCCcEE
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKIL--------------DKNI-----------FAQAIGAISCNEVKRPLL 57 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~--------------~~~~-----------i~~~l~~~~~~~~~~pll 57 (352)
+|.||+..+-+- -+++.+++||+||+.+..++ +.-+ +..-++. +.+.|.+.+
T Consensus 209 LDeGFlL~K~ig-v~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~k--I~~hgiN~F 285 (527)
T KOG0363|consen 209 LDEGFLLDKKIG-VNQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEK--ILKHGINVF 285 (527)
T ss_pred ccccceeccccC-CCCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHH--HHhcCCcEE
Confidence 455666554432 45778999999999988544 2222 2233444 888899988
Q ss_pred EEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCC
Q 018642 58 VVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPL 137 (352)
Q Consensus 58 ii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~ 137 (352)
|=-.=|.+.+.++|..-+ +++|....|.. +|||+..|||.++|++ ++++..
T Consensus 286 iNRQLiYnyPeqLf~dag------i~aIEHADFdG---------------------iERLalvtGGeI~STF--d~p~~~ 336 (527)
T KOG0363|consen 286 INRQLIYNYPEQLFADAG------IMAIEHADFDG---------------------IERLALVTGGEIVSTF--DNPELV 336 (527)
T ss_pred eehhHhhcCHHHHHhhcC------cceeecccchh---------------------HHHHhhcccceeeecc--CCcchh
Confidence 877778888888777544 56888888887 9999999999999999 999999
Q ss_pred CceeecEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHH
Q 018642 138 MLGSCKKVK---VTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKK 214 (352)
Q Consensus 138 ~LG~a~~v~---v~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~ 214 (352)
.||+|+.++ +++++++-|.|+.. |.+|||++||+|++.+||.
T Consensus 337 klG~C~~IeeimiGed~li~FSGv~~-----------------------------------GeActIVlrGat~q~LDEa 381 (527)
T KOG0363|consen 337 KLGECDLIEEIMIGEDKLIKFSGVKL-----------------------------------GEACTIVLRGATQQILDEA 381 (527)
T ss_pred ccccchhhHHHhcCccceeeeccccc-----------------------------------ccceEEEEecccHHHHHHH
Confidence 999999875 68999999999854 6689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHH
Q 018642 215 RKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLL 291 (352)
Q Consensus 215 er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~ 291 (352)
||++|||||+....+++. +|.|||++||-++..+.+++.. +|++..++++|++||.++|.+||.|||+|+. ++++|+
T Consensus 382 eRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lr 461 (527)
T KOG0363|consen 382 ERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLR 461 (527)
T ss_pred HHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHH
Confidence 999999999999999987 9999999999999999999876 8999999999999999999999999999999 999999
Q ss_pred cc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 292 GQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 292 ~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
+. +..++|+|+.+|++.||.+.||+|+ ++||++.+.+|.+.|.+||.+|+||+...
T Consensus 462 a~h~~g~~t~Gld~~~G~i~dm~~~Gi~es-~~vK~~vv~sasEaae~ilrvD~Iik~aP 520 (527)
T KOG0363|consen 462 AEHYNGRTTMGLDVRNGEIGDMRELGIVES-LKVKQAVVSSASEAAEMILRVDNIIKAAP 520 (527)
T ss_pred HHhhcCCcccccccccCchhhHHHhhhHHH-HHHHHHHHhhhHHHHHHHHhhhhhhhcCC
Confidence 75 5678999999999999999999999 99999999999999999999999998754
No 38
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=324.81 Aligned_cols=245 Identities=15% Similarity=0.179 Sum_probs=224.0
Q ss_pred HHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHH
Q 018642 40 FAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAI 119 (352)
Q Consensus 40 i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~ 119 (352)
++.++++ ++++|+++|+|+++|-.+|++.|+.|-+. ++++++||..+. +++|++|+
T Consensus 278 iL~mcKk--IKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvikdieR---------------------ediefick 333 (534)
T KOG0358|consen 278 ILNMCKK--IKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIKDIER---------------------EDIEFICK 333 (534)
T ss_pred HHHHHHH--HHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEccccH---------------------hhHHHHHh
Confidence 5666666 99999999999999999999888888876 489999999643 44999999
Q ss_pred HhCCeEeeccCCCCCCCCCceeecEEEEe----cceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhc
Q 018642 120 LTGGRVVTAASNSLYIPLMLGSCKKVKVT----NNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLS 195 (352)
Q Consensus 120 ~tG~~iis~~~~~~~~~~~LG~a~~v~v~----~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~ 195 (352)
.+|++++++. +.++++.||+++.++.+ +++.+-+.|+.++
T Consensus 334 ~l~c~Pia~i--d~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~---------------------------------- 377 (534)
T KOG0358|consen 334 TLGCKPIADI--DHFTADKLGSADLVEETDSSGEGKIVKITGIQNA---------------------------------- 377 (534)
T ss_pred hcCCeecchh--hhcChhhcCcchhhhhcccCCCccEEEEEEeecC----------------------------------
Confidence 9999999999 99999999999999753 5578888886553
Q ss_pred CceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHH
Q 018642 196 SRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPL 273 (352)
Q Consensus 196 g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp 273 (352)
|..++|++||++...++|.+|++|||||++|+.++.. .+||||+.||+++..|..++.. .|.+.|++++|++|||.+|
T Consensus 378 g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP 457 (534)
T KOG0358|consen 378 GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIP 457 (534)
T ss_pred CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999986 9999999999999999998776 8899999999999999999
Q ss_pred HHHHHhcCCCHH-HHHHHHcc---CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhh
Q 018642 274 YTIASTAGFQVS-VVEKLLGQ---ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQ 345 (352)
Q Consensus 274 ~~La~NAG~d~~-vv~kl~~~---~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~ 345 (352)
.+||+|||++|. ++.+||+. +..+.|+++++|.+.||++..|+.| +.|..++++.|+|...+||-.||++.
T Consensus 458 ~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQP-llVs~SaitlA~Etvr~ILKIDDIv~ 532 (534)
T KOG0358|consen 458 YTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQP-LLVSISAITLATETVRSILKIDDIVN 532 (534)
T ss_pred HhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccc-eeeeHHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999 99999875 5678999999999999999999999 99999999999999999999999874
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-38 Score=307.18 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=238.4
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCCHH-HHHHHHhhcccccCCCcEEEEe-cCchhhhhhhhh--hccccc
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKN-IFAQAIGAISCNEVKRPLLVVA-NDVEEEVAGFVV--TNETFS 78 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~-~i~~~l~~~~~~~~~~pllii~-~~i~~~al~~l~--~n~~~~ 78 (352)
+.+|.+..+--.|+.|+..++|++||+++..+...+ ++=.-.=+ +-.+ .+..++.+ ..|-+.-+.-++ .++..
T Consensus 203 ~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY-sta~-ere~L~~~eR~Fi~~r~~kiielk~~vc- 279 (520)
T KOG0359|consen 203 LVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY-STAE-EREVLVLAERKFIDQRVRKIIELKRKVC- 279 (520)
T ss_pred HhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc-cchh-HHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 345555555555678999999999999998655221 00000000 0000 00001100 011111111111 01110
Q ss_pred cceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEE---ecceEEEE
Q 018642 79 KTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKV---TNNEMIIH 155 (352)
Q Consensus 79 ~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v---~~~~~~~i 155 (352)
..++|.-.|.+..+..+|-++|+|+++|.++.+||||.++|||..++++ ++++|++||.|+.|.+ ++++|+|+
T Consensus 280 --~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsv--ddLtp~~LG~aglVye~tlGEEkfTFI 355 (520)
T KOG0359|consen 280 --EFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSV--DDLTPDYLGYAGLVYEYTLGEEKFTFI 355 (520)
T ss_pred --eEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceeccc--ccCChhhccccceeEEeeccceeeEee
Confidence 1345555666666777788889999999999999999999999999999 9999999999999964 79999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-cc
Q 018642 156 GGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-II 234 (352)
Q Consensus 156 ~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vV 234 (352)
++|.+| ++|||+++|+|.+.+.+.|++++|+|++++++++++ ++
T Consensus 356 E~~~~p-----------------------------------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i 400 (520)
T KOG0359|consen 356 EKCNNP-----------------------------------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGI 400 (520)
T ss_pred ecCCCC-----------------------------------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccc
Confidence 999986 468999999999999999999999999999999999 99
Q ss_pred ccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccC-CCCeeeeCCCCcccchh
Q 018642 235 PGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQE-NPDLEYDPPRDEYVDAV 311 (352)
Q Consensus 235 pGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~-~~~~G~d~~~g~~~dm~ 311 (352)
||+|+.|.+++.+|+....+ +++.++|+++|++||.++|++|++|+|+|+. .+.+|.+.+ ....|+|..+|+..+-.
T Consensus 401 ~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~ 480 (520)
T KOG0359|consen 401 PGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPS 480 (520)
T ss_pred cCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchh
Confidence 99999999999999987765 8999999999999999999999999999999 888887652 23569999999999999
Q ss_pred hCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccC
Q 018642 312 KSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQK 348 (352)
Q Consensus 312 ~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~ 348 (352)
..||||. +.|+++.|.+++-+|+.||++||+|++-.
T Consensus 481 ~~gi~Dn-y~v~~~~l~s~~via~nlLlvDEi~rAG~ 516 (520)
T KOG0359|consen 481 RKGIYDN-YSVKKQLLRSEAVIATNLLLVDEIIRAGM 516 (520)
T ss_pred hccccch-HHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 9999999 99999999999999999999999999754
No 40
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=310.69 Aligned_cols=299 Identities=16% Similarity=0.153 Sum_probs=242.1
Q ss_pred cceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhh---hhhhhhccccccc
Q 018642 4 NWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEV---AGFVVTNETFSKT 80 (352)
Q Consensus 4 ~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~a---l~~l~~n~~~~~~ 80 (352)
-.||....-+..+.|+..+.||+|++.|..+.... .+.|.-++|.-.+..++- -+.+.+.+++..+
T Consensus 214 ~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~k-----------m~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl 282 (545)
T KOG0360|consen 214 LPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTK-----------MKLGVQVVVDDPEKLEQIRQREQDITKERIKKIL 282 (545)
T ss_pred ecceeeeccHhhhccccccccceeeeEeccccccc-----------ccccceEEEcChHHHHHHHHHHhHhHHHHHHHHH
Confidence 36888886666688999999999999999654221 011222222111110000 0011122221111
Q ss_pred e---EEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCC----CCCCCCCceeecEEE---Eecc
Q 018642 81 K---LCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASN----SLYIPLMLGSCKKVK---VTNN 150 (352)
Q Consensus 81 ~---v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~----~~~~~~~LG~a~~v~---v~~~ 150 (352)
. =+++...+.+|||++||.|+|+++++|.+|++|++||++||++++++... +.+++.++|+|+.|. +.++
T Consensus 283 ~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dd 362 (545)
T KOG0360|consen 283 ATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDD 362 (545)
T ss_pred hcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccc
Confidence 1 03445556667778888889999999999999999999999999999843 788999999999984 6899
Q ss_pred eEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHh
Q 018642 151 EMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAME 230 (352)
Q Consensus 151 ~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~ 230 (352)
+++++.+.+. .+|+|.+||++++.+||++|++|||||++|..++
T Consensus 363 e~ilikg~ka------------------------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLe 406 (545)
T KOG0360|consen 363 ELILIKGTKA------------------------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLE 406 (545)
T ss_pred eeEEeccCcc------------------------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhc
Confidence 9999998543 2689999999999999999999999999999999
Q ss_pred cC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccC-----------CC
Q 018642 231 EG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQE-----------NP 296 (352)
Q Consensus 231 ~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~~-----------~~ 296 (352)
++ +|||||++|.+++-+|+.|+.. +.+||.++.-|+.||..+|++|+-||+.|+. .+++++..+ ..
T Consensus 407 s~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k 486 (545)
T KOG0360|consen 407 SKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLK 486 (545)
T ss_pred cCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccch
Confidence 99 9999999999999999999887 7899999999999999999999999999999 999998642 34
Q ss_pred CeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccCCC
Q 018642 297 DLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGR 350 (352)
Q Consensus 297 ~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~~~ 350 (352)
++|+|..+|++.|.++.|+++| .-++...|+.|++.|..+|..|+-++...+.
T Consensus 487 ~~GldL~ng~~~dn~~~g~~ep-~~~kvksLk~ateaaitiLriD~li~l~~~~ 539 (545)
T KOG0360|consen 487 QYGLDLINGKIRDNKSAGSFEP-PIVKVKSLKFATEAAITILRIDDLIKLLPEL 539 (545)
T ss_pred hhCccccccEeecceeeeeecc-ceeehhhhHHHHHhhhhhcchhhhhhcCccc
Confidence 8999999999999999999999 9999999999999999999999999887664
No 41
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=309.46 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=243.8
Q ss_pred ceecccccccCcCceeEeeCceeeeecCCCCC-------------HHHHHHHHhh--------cc-cccCCCcEEEEec-
Q 018642 5 WGSMSRYFLYEEDQTLDLKNPFILIHENKILD-------------KNIFAQAIGA--------IS-CNEVKRPLLVVAN- 61 (352)
Q Consensus 5 ~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~-------------~~~i~~~l~~--------~~-~~~~~~pllii~~- 61 (352)
+|.+..+.++|++|+..++||+|++.|+++.. .+++-.+|+. |+ +.. -+|-||+++
T Consensus 212 ~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~-v~pDlVitek 290 (527)
T KOG0364|consen 212 KGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIA-VKPDLVITEK 290 (527)
T ss_pred cceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHe-ecccEEEecc
Confidence 58999999999999999999999999997651 1233333322 12 444 357777776
Q ss_pred CchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCce-
Q 018642 62 DVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLG- 140 (352)
Q Consensus 62 ~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG- 140 (352)
++++.|.|+|..+++. +++. .||.+..+|+.+||++++++. +++...+.|
T Consensus 291 G~sdla~hyl~k~~iT------~~rr---------------------~rKtDn~ria~acga~iv~rp--edl~e~dvGt 341 (527)
T KOG0364|consen 291 GVSDLAQHYLLKANIT------AIRR---------------------LRKTDNNRIARACGARIVNRP--EDLPERDVGT 341 (527)
T ss_pred chhHHHHHHHHhcCch------hhhh---------------------hhccccchhhhhcCceeccCh--hhCchhccCc
Confidence 9999999999988865 4444 788889999999999999999 999999999
Q ss_pred eecEEEE---ecceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHH
Q 018642 141 SCKKVKV---TNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKR 217 (352)
Q Consensus 141 ~a~~v~v---~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~ 217 (352)
.|+.+++ +++.|+|++.|++| ++|||++||+|...++|.+|.
T Consensus 342 ~agLf~~kK~gdeyf~f~~~Ck~p-----------------------------------kaCtillrg~skdil~e~ern 386 (527)
T KOG0364|consen 342 GAGLFEVKKIGDEYFTFFTDCKEP-----------------------------------KACTILLRGPSKDILNEVERN 386 (527)
T ss_pred ccceeeeeccCchhhhhhhhcCCC-----------------------------------cceEEEeccCchhHHHHHHHH
Confidence 5778865 67799999999886 469999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc-
Q 018642 218 ATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ- 293 (352)
Q Consensus 218 i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~- 293 (352)
+.||+.+.|+.+-++ +|||||++||..|+.|.+.+.. +|-+|+.+.+++.||+.+||+|++|+|.++. .+..+++.
T Consensus 387 lqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh 466 (527)
T KOG0364|consen 387 LQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKH 466 (527)
T ss_pred hhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHh
Confidence 999999999999998 9999999999999999986544 8899999999999999999999999999999 99988765
Q ss_pred --CCCCeeeeCCCCcccchhhCCcccCchhHHHHHHHHHHHHHHHHHhhHhHhhccCCCC
Q 018642 294 --ENPDLEYDPPRDEYVDAVKSAIVDPPLKLIRNELDDAVSYFVSRWCSTEKLQRQKGRV 351 (352)
Q Consensus 294 --~~~~~G~d~~~g~~~dm~~~GIiDP~~~Vk~~al~~A~~~A~~iL~~de~i~~~~~~~ 351 (352)
+...+|+|..+|.++||.+.|+|+| ..||.+..++|++.|+++|++|+++-.-+-|+
T Consensus 467 ~~G~~~~gi~g~tg~iVDm~~~~iwep-~~vK~Q~~ktavesa~~LLRIddIvsg~kk~v 525 (527)
T KOG0364|consen 467 KEGQRVWGIDGETGVIVDMVELGIWEP-EAVKLQTGKTAVESACLLLRIDDIVSGKKKRV 525 (527)
T ss_pred cCcceeecccCceeeEeeeeeccccch-hhhhhhhhhHHHHHHHHHHhhhceeeeeeecc
Confidence 3457899999999999999999999 99999999999999999999999987666554
No 42
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=278.17 Aligned_cols=248 Identities=19% Similarity=0.262 Sum_probs=217.8
Q ss_pred CCCHHHHHHH-----------HhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccc
Q 018642 34 ILDKNIFAQA-----------IGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENC 102 (352)
Q Consensus 34 i~~~~~i~~~-----------l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~ 102 (352)
|+++++++.+ ++. +...|..+++..+.+++.+|++ .|+ ++++++|.++..|
T Consensus 254 i~~A~el~~FSKgEe~lle~~vk~--Ia~~gvkViV~~g~V~em~Lhf--lnk----y~ImVlqi~Sk~e---------- 315 (537)
T KOG0362|consen 254 LKNAKELLNFSKGEEALLEEQVKA--IADAGVKVIVSGGKVDEMTLHF--LNK----YKIMVLQINSKFD---------- 315 (537)
T ss_pred ecCcHhhhhhccccHHHHHHHHHH--HHhcCCeEEEecCccchhhhhh--hcc----ccEEEEEeccHhh----------
Confidence 5666655533 444 7788999999999999999999 666 7899999998888
Q ss_pred hhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEE---EecceEEEEcC-CCChhhHHHHHHHHHHHHhhc
Q 018642 103 ELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVK---VTNNEMIIHGG-SGNQVYIEDRCEQLSDAIEMS 178 (352)
Q Consensus 103 ~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~---v~~~~~~~i~~-~~~~~~i~~ri~~l~~~~~~~ 178 (352)
|.+|+...||++.++. ..+.+..+|+|++|. ++++..++|.. ++.
T Consensus 316 -----------LrrlcrtvGA~~l~rl--~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~------------------ 364 (537)
T KOG0362|consen 316 -----------LRRLCRTVGATALPRL--FPPAPEELGYCDSVSTQEIGDTLVVVFRWESTG------------------ 364 (537)
T ss_pred -----------HHHHHHHcCCccchhc--cCCCCccccccceeeeeecCCceEEEEeeccCC------------------
Confidence 9999999999999999 788899999999985 45666555543 322
Q ss_pred cCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhccCCC-Ch
Q 018642 179 TSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEKLPAM-NI 256 (352)
Q Consensus 179 ~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~~~~~-~~ 256 (352)
++++||++||+|+..+|+.||+++|++++.|..++++ ++||+|++|+++++.|.++... +|
T Consensus 365 -----------------~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~G 427 (537)
T KOG0362|consen 365 -----------------TRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPG 427 (537)
T ss_pred -----------------CceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCC
Confidence 4689999999999999999999999999999999998 9999999999999999999876 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHcc--CCCCeeeeCCCC-cccchhhCCcccCchhHHHHHHHHHHH
Q 018642 257 GEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQ--ENPDLEYDPPRD-EYVDAVKSAIVDPPLKLIRNELDDAVS 332 (352)
Q Consensus 257 ~eq~gi~~~a~AL~~pp~~La~NAG~d~~-vv~kl~~~--~~~~~G~d~~~g-~~~dm~~~GIiDP~~~Vk~~al~~A~~ 332 (352)
..|+++..|++||+..|++||+|||++.. +++++... +..+.|+|+... ...|+.+.||||- +.+|.++|+.|++
T Consensus 428 l~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~-~~~K~~a~k~at~ 506 (537)
T KOG0362|consen 428 LKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDT-LAVKAQAIKLATE 506 (537)
T ss_pred cchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999764 245678888766 4789999999999 9999999999999
Q ss_pred HHHHHHhhHhHhhccC
Q 018642 333 YFVSRWCSTEKLQRQK 348 (352)
Q Consensus 333 ~A~~iL~~de~i~~~~ 348 (352)
+|+++|.+|.++-+-+
T Consensus 507 aa~tvl~vDqiimak~ 522 (537)
T KOG0362|consen 507 AALTVLTVDQIIMAKK 522 (537)
T ss_pred hhheeeehhheeEecc
Confidence 9999999999987654
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.87 E-value=1.8e-21 Score=184.52 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=138.3
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCCC------HHH-----------HHHHHhhcccccCCCcEEEEecCchh
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKILD------KNI-----------FAQAIGAISCNEVKRPLLVVANDVEE 65 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~------~~~-----------i~~~l~~~~~~~~~~pllii~~~i~~ 65 (352)
+-+|++.++-+.+++|+..++||+|+++++.|+. +.+ +...++. +.+.|.+++++.++|++
T Consensus 65 li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~k--I~~~g~nvIl~~k~I~~ 142 (261)
T cd03334 65 VVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSR--IVALRPDVILVEKSVSR 142 (261)
T ss_pred EEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHH--HHhcCCCEEEECCccCH
Confidence 5579998888888889999999999999998753 222 3344555 88889999999999999
Q ss_pred hhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEE
Q 018642 66 EVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV 145 (352)
Q Consensus 66 ~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v 145 (352)
.|+++|..+++ ++++.++ +.+|++||++|||+++++.. +.+++++||+|++|
T Consensus 143 ~a~~~l~k~gI------~~v~~v~---------------------~~dl~rIa~~tGa~ii~~i~-~~~~~~~lG~~~~v 194 (261)
T cd03334 143 IAQDLLLEAGI------TLVLNVK---------------------PSVLERISRCTGADIISSMD-DLLTSPKLGTCESF 194 (261)
T ss_pred HHHHHHHHCCC------EEEEecC---------------------HHHHHHHHHHhCCEEecChh-hhcCcccCcCcceE
Confidence 99999887664 5888854 45599999999999999941 57889999999999
Q ss_pred EEe---c-----ceEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHH
Q 018642 146 KVT---N-----NEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKR 217 (352)
Q Consensus 146 ~v~---~-----~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~ 217 (352)
++. + .+++++.+|+.+ +++||+|||+|++.++|.||+
T Consensus 195 ~~~~ig~~~~~~~~~~~~~~~~~~-----------------------------------~~~TIlLRG~t~~~lde~eR~ 239 (261)
T cd03334 195 RVRTYVEEHGRSKTLMFFEGCPKE-----------------------------------LGCTILLRGGDLEELKKVKRV 239 (261)
T ss_pred EEEEecCcCCCceeEEEEecCCCC-----------------------------------ceeEEEEECCCHHHHHHHHHH
Confidence 863 2 478999988652 479999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 018642 218 ATNALNAAKAAMEEG 232 (352)
Q Consensus 218 i~DAl~a~k~a~~~g 232 (352)
++||+++++++..++
T Consensus 240 i~Dal~v~~~~~le~ 254 (261)
T cd03334 240 VEFMVFAAYHLKLET 254 (261)
T ss_pred HHHHHHHHHHHHHhH
Confidence 999999999998875
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.85 E-value=1.7e-20 Score=171.51 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=121.5
Q ss_pred cceecccccccCcCceeEeeCceeeeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEE
Q 018642 4 NWGSMSRYFLYEEDQTLDLKNPFILIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLC 83 (352)
Q Consensus 4 ~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~ 83 (352)
-+|++.++-+.++.|+..++||+||+++++|+. ++++.++|+++|+++|..++ ++
T Consensus 62 i~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~-------------------vii~~~~I~~~al~~l~~~~------I~ 116 (209)
T cd03333 62 VVGVVFDKGYASPYMPKRLENAKILLLDCPLEY-------------------VVIAEKGIDDLALHYLAKAG------IM 116 (209)
T ss_pred EeeEEEeccccCCCCCeEcCCCcEEEEeCCeeE-------------------EEEecCcccHHHHHHHHHCC------CE
Confidence 346666655556667899999999999999876 55566679999999988755 56
Q ss_pred EecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEEEEec---ceEEEEcCCCC
Q 018642 84 FVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKVKVTN---NEMIIHGGSGN 160 (352)
Q Consensus 84 avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v~v~~---~~~~~i~~~~~ 160 (352)
+|++. +++.|+|||.+|||+++++. ++++++.||+|++|++.+ ..++++.+|..
T Consensus 117 ~v~~~---------------------~~~~l~~ia~~tga~ii~~~--~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~ 173 (209)
T cd03333 117 AVRRV---------------------KKEDLERIARATGATIVSSL--EDLTPEDLGTAELVEETKIGEEKLTFIEGCKG 173 (209)
T ss_pred EEEeC---------------------CHHHHHHHHHHHCCEEeccc--ccCChhhceeeeEEEEEEECCeEEEEEEcCCC
Confidence 88884 45669999999999999998 889999999999998753 35778887654
Q ss_pred hhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 018642 161 QVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEE 231 (352)
Q Consensus 161 ~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~ 231 (352)
++.|||+|||+|+.+++|.||+++||++++++++++
T Consensus 174 -----------------------------------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -----------------------------------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----------------------------------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 467999999999999999999999999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.87 E-value=3.4e-05 Score=86.18 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=126.1
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCC---------CCHHHHHH--------HHhhcccccCCCcEEEEecCchh
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKI---------LDKNIFAQ--------AIGAISCNEVKRPLLVVANDVEE 65 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i---------~~~~~i~~--------~l~~~~~~~~~~pllii~~~i~~ 65 (352)
+.+|++-.+-+.+..|...+++|.||+..+.| .+++.++. .+.. +....-.+|++-.+|++
T Consensus 379 vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~var--I~s~~p~vllVeksVS~ 456 (1598)
T KOG0230|consen 379 VIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVAR--IESLRPDVLLVEKSVSR 456 (1598)
T ss_pred eeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHH--HHhcCCCeEEEechHHH
Confidence 56788888888888899999999999988843 33333322 2222 33333445558889999
Q ss_pred hhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEeeccCCCCCCCCCceeecEE
Q 018642 66 EVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVTAASNSLYIPLMLGSCKKV 145 (352)
Q Consensus 66 ~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis~~~~~~~~~~~LG~a~~v 145 (352)
.|..+|..-.+. +++. .+...|+||++.||+.|+.+. +.++...||.|..+
T Consensus 457 ~aqe~L~~k~I~-----lvln----------------------vK~s~leRIsR~tga~I~~si--Dslt~~klg~C~~F 507 (1598)
T KOG0230|consen 457 IAQELLLDKGIS-----LVLN----------------------VKRSLLERISRCTGADIVPSV--DSLTSQKLGYCELF 507 (1598)
T ss_pred HHHHHhhccCeE-----EEEe----------------------ccHHHHHHHHHHhcCceecch--hhhhccccCCCccH
Confidence 999997754432 1222 344669999999999999998 88888999999998
Q ss_pred EEec---c-----eEEEEcCCCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHH
Q 018642 146 KVTN---N-----EMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKR 217 (352)
Q Consensus 146 ~v~~---~-----~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~ 217 (352)
++.+ + ...|+.||..+ .-|||++||++..++.+.++-
T Consensus 508 ~v~~~~e~hk~sKTlmffegc~~~-----------------------------------lG~TiLLrG~~~~eLkkVK~V 552 (1598)
T KOG0230|consen 508 RVENYVEEHKPSKTLMFFEGCPKP-----------------------------------LGCTILLRGDSLEELKKVKHV 552 (1598)
T ss_pred hhhhhhhcccchhhhHHhhcCCCC-----------------------------------CCceEEecCCCHHHHHHHHHH
Confidence 7632 1 23456666542 248999999999999999999
Q ss_pred HHHHHHHHH-HHHhcCccccchHHHH
Q 018642 218 ATNALNAAK-AAMEEGIIPGGGVALL 242 (352)
Q Consensus 218 i~DAl~a~k-~a~~~gvVpGGGaael 242 (352)
+.=++-++- .+++.-|+.--|+...
T Consensus 553 vq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 553 VQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCccc
Confidence 988887764 5566667776666554
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=4.8 Score=42.32 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred ceeEeeCceeeeecCCCCCHHHHHHHHhh---------c-ccccCCCc-EEEEecCchhhhhhhhhhccccccceEEEec
Q 018642 18 QTLDLKNPFILIHENKILDKNIFAQAIGA---------I-SCNEVKRP-LLVVANDVEEEVAGFVVTNETFSKTKLCFVK 86 (352)
Q Consensus 18 ~~~~l~~~~il~~d~~i~~~~~i~~~l~~---------~-~~~~~~~p-llii~~~i~~~al~~l~~n~~~~~~~v~avk 86 (352)
.+.++.+|... +...+++.++++-+++. + ++.+.|.+ +++.+++|+|.++++|..+.+ .+++
T Consensus 226 ~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I------lt~~ 298 (524)
T COG0459 226 KKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI------LTGR 298 (524)
T ss_pred cccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc------eecc
Confidence 34445555554 55566666665555444 1 26677889 777888999999999887664 5888
Q ss_pred CCCCCC
Q 018642 87 PPVFEE 92 (352)
Q Consensus 87 ~p~~~d 92 (352)
.+...|
T Consensus 299 ~v~~~d 304 (524)
T COG0459 299 RVKKED 304 (524)
T ss_pred eecchh
Confidence 888777
No 47
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=61.75 E-value=16 Score=34.48 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHH
Q 018642 34 ILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAI 113 (352)
Q Consensus 34 i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~ 113 (352)
+...+.-..+++. +.+...|+|| |-++|+.+..+.... ..- +|=.|-.|| +.++++.... +++.|.+.
T Consensus 77 lg~~~~~~~~~~~--~~~~~~p~Vl-----DADaL~~l~~~~~~~-~~~-~IlTPH~gE-~~rL~~~~~~--~~~~~~~~ 144 (242)
T PF01256_consen 77 LGRDEETEELLEE--LLESDKPLVL-----DADALNLLAENPKKR-NAP-VILTPHPGE-FARLLGKSVE--IQEDRIEA 144 (242)
T ss_dssp -SSSHHHHHHHHH--HHHHCSTEEE-----ECHHHHCHHHCCCCS-SSC-EEEE-BHHH-HHHHHTTTCH--HCCSHHHH
T ss_pred CCCchhhHHHHHH--HHhhcceEEE-----ehHHHHHHHhccccC-CCC-EEECCCHHH-HHHHhCCccc--chhhHHHH
Confidence 3333444456666 6666889887 889999988875221 222 344567777 7778887777 88889999
Q ss_pred HHHHHHHhCCeEeec
Q 018642 114 MRDIAILTGGRVVTA 128 (352)
Q Consensus 114 Ledia~~tG~~iis~ 128 (352)
.++++..+|+.++-.
T Consensus 145 a~~~a~~~~~~vvLK 159 (242)
T PF01256_consen 145 AREFAKEYGAVVVLK 159 (242)
T ss_dssp HHHHHHHHTSEEEEE
T ss_pred HHHHHhhcCcEEEEe
Confidence 999999999988854
No 48
>smart00574 POX domain associated with HOX domains.
Probab=56.91 E-value=35 Score=29.60 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHh
Q 018642 180 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELE 249 (352)
Q Consensus 180 ~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~ 249 (352)
+..++..++.+.++|- ..++|.+++++--..-++..+..- .|+|+|++-.+.+-+|.
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~ 125 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALK 125 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 5566777777766665 467888888887777777777765 78999999888776664
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=52.27 E-value=39 Score=26.73 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecC
Q 018642 42 QAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKP 87 (352)
Q Consensus 42 ~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~ 87 (352)
+.+++ +.+...-+|++|+|+++....-|..-=.+.+++++-|..
T Consensus 20 qt~Ka--i~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 20 ETLKA--LKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHH--HhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34454 544457799999999998777544322223456555544
No 50
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=51.92 E-value=68 Score=31.02 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=94.0
Q ss_pred eeeecCCCCCHHHHHHHHhhcccccCCCcEEEEec----Cchhhhhh-hhhhccccccceEEEecCCCCCCchhhhhccc
Q 018642 27 ILIHENKILDKNIFAQAIGAISCNEVKRPLLVVAN----DVEEEVAG-FVVTNETFSKTKLCFVKPPVFEESWKAVYGEN 101 (352)
Q Consensus 27 il~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~----~i~~~al~-~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~ 101 (352)
.|++.. +.++..+.+.. +...=..+|+... ..-+|-+. .+..++.++.+..+..-+..||.
T Consensus 54 ~lv~Gs---~~~k~ae~~ak--~~~~v~kvlvae~~k~~~~lpe~lapl~~~~~kq~~yshi~a~~SafGK--------- 119 (336)
T KOG3954|consen 54 VLVAGS---KASKAAEALAK--VVGDVKKVLVAEDDKLEGNLPEQLAPLLLANQKQFDYSHILAGSSAFGK--------- 119 (336)
T ss_pred EEEecC---cchHHHHHHHh--hccchheEEEeecchhcccchHHhHHHHHHHHhcCCeeEEEeccccccc---------
Confidence 344443 33455555555 3321123444333 22334443 55566666677666777777776
Q ss_pred chhhhhHhhHHHHHHHHHHhCCeEeeccCC----CC-CCCCCceeecE-EEEecc-eEEEEcCCCC---------h----
Q 018642 102 CELVYEENCKAIMRDIAILTGGRVVTAASN----SL-YIPLMLGSCKK-VKVTNN-EMIIHGGSGN---------Q---- 161 (352)
Q Consensus 102 ~~~~~~~~r~~~Ledia~~tG~~iis~~~~----~~-~~~~~LG~a~~-v~v~~~-~~~~i~~~~~---------~---- 161 (352)
..|-|+|....-.++++..+ +. +.+-+-|.+-. |+.+.. +.+.+.+... .
T Consensus 120 ----------~vlPRvaA~lDV~pIsdvi~i~s~dtFvRpiYAGNa~~tv~~~~~~k~ltvR~tsF~~a~~sg~s~a~~~ 189 (336)
T KOG3954|consen 120 ----------NVLPRVAAKLDVSPISDVIGIKSADTFVRPIYAGNAICTVKCKAPIKLLTVRATSFPPAATSGGSAATEV 189 (336)
T ss_pred ----------cchhhHHhhhcccchhheeEeccCcceeeeeeccceEEEEEcCCCceEEEEecccCCCcccCCCCcceee
Confidence 56888888888888877743 11 12233443321 111111 2222221111 0
Q ss_pred hhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhcCceEEEEEcC-------cchHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018642 162 VYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGG-------ATTAESRKKRKRATNALNAAKAAMEEGII 234 (352)
Q Consensus 162 ~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~g~~atI~vgG-------~te~~l~E~er~i~DAl~a~k~a~~~gvV 234 (352)
+.....+..+.++..+...+-||..|. .|..+|-| .|=..+...-+.++-|+-++|+|+..|+|
T Consensus 190 ~~s~~~~~~~se~v~~~ltkseRPdL~---------sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyv 260 (336)
T KOG3954|consen 190 APSDDKPVSLSEWVSQELTKSERPDLT---------SAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYV 260 (336)
T ss_pred ccCCCChhHHHHHHHhhcccccCCccc---------cceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcC
Confidence 111123344555555555555555442 23444433 23346778888999999999999999999
Q ss_pred cc
Q 018642 235 PG 236 (352)
Q Consensus 235 pG 236 (352)
|-
T Consensus 261 pN 262 (336)
T KOG3954|consen 261 PN 262 (336)
T ss_pred CC
Confidence 85
No 51
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=50.24 E-value=16 Score=38.43 Aligned_cols=38 Identities=5% Similarity=-0.084 Sum_probs=28.7
Q ss_pred EEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCC
Q 018642 83 CFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGG 123 (352)
Q Consensus 83 ~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~ 123 (352)
+++-..++++....+|.++|++++++.. -++|-..+-+
T Consensus 294 lvi~~~~I~~~al~~L~~~~i~~v~~~~---~~~l~~Ia~~ 331 (532)
T TIGR02343 294 IVICQWGFDDEANHLLLQNDLPAVRWVG---GHELELIAIA 331 (532)
T ss_pred EEEeCCCccHHHHHHHHHCCcEEEEcCC---HHHHHHHHHH
Confidence 4555778999999999999999988765 6776665433
No 52
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=45.80 E-value=1.1e+02 Score=31.98 Aligned_cols=38 Identities=5% Similarity=0.013 Sum_probs=32.1
Q ss_pred cccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCCCCC
Q 018642 49 CNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPVFEE 92 (352)
Q Consensus 49 ~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~~~d 92 (352)
+.+.|.+++++.+.|++.++++|..+++ .+++++...|
T Consensus 278 i~~~g~~vv~~~~~i~d~~~~~L~~~~I------~~~~~v~~~d 315 (522)
T TIGR02345 278 IVESGANVVLSKLPIGDLATQYFADHNI------FCAGRVSDED 315 (522)
T ss_pred HHhcCCcEEEeCCCccHHHHHHHHHCCc------EEEecCCHHH
Confidence 7777889999999999999999887764 6888877666
No 53
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=45.31 E-value=22 Score=37.15 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=14.6
Q ss_pred EEecCCCCCCchhhhhcccchhhh
Q 018642 83 CFVKPPVFEESWKAVYGENCELVY 106 (352)
Q Consensus 83 ~avk~p~~~d~~~~~~~~~~~~~~ 106 (352)
+++-..++++....+|.++|++++
T Consensus 290 lvi~~~~I~~~al~~L~~~~I~av 313 (526)
T cd03339 290 LVICQWGFDDEANHLLLQNGLPAV 313 (526)
T ss_pred EEEeCCCCCHHHHHHHHHCCCEEE
Confidence 344466778866666666666543
No 54
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=40.79 E-value=73 Score=27.59 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHhc
Q 018642 180 SDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG-IIPGGGVALLHASEELEK 250 (352)
Q Consensus 180 ~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g-vVpGGGaael~~s~~L~~ 250 (352)
+.-++..++.+.++|- ..++|.+++++--..-++..+..- -|.|.|++-.+.+-+|+.
T Consensus 68 s~~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqa 126 (140)
T PF07526_consen 68 SPAERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQA 126 (140)
T ss_pred ChhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 3455666666666665 466777777777777777666665 789999998888766643
No 55
>PLN02512 acetylglutamate kinase
Probab=37.13 E-value=86 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=28.6
Q ss_pred HHHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHh-cC-ccccchHH
Q 018642 190 RLQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAME-EG-IIPGGGVA 240 (352)
Q Consensus 190 Rl~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~-~g-vVpGGGaa 240 (352)
.+.++.+++.+|++||+.-.. ++...++.+.+...+ ... .- +|.|||..
T Consensus 41 yi~~~~~~tiVIKlGGs~i~d-~~~~~~~~~di~~l~-~~g~~iVlVHGgG~~ 91 (309)
T PLN02512 41 FIQRFRGKTVVVKYGGAAMKD-PELKAGVIRDLVLLS-CVGLRPVLVHGGGPE 91 (309)
T ss_pred HHHHHCCCeEEEEECCeeccC-hhHHHHHHHHHHHHH-HCCCCEEEEECCcHH
Confidence 455778999999999977322 123333444443332 221 22 78999983
No 56
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=32.74 E-value=73 Score=33.45 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=55.4
Q ss_pred ecceecccccccCcCceeEeeCceeeeecCCCC-------------CHHHHHHHHhhcccccCCCcEEEEecCchhhhhh
Q 018642 3 LNWGSMSRYFLYEEDQTLDLKNPFILIHENKIL-------------DKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAG 69 (352)
Q Consensus 3 ~~~G~~s~~f~~~~~~~~~l~~~~il~~d~~i~-------------~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~ 69 (352)
+-+|++.++-. ..++..++||+|+++++++. ++.++..+.+. + ...-...+.
T Consensus 209 li~Gi~~~~~~--~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----e---------~~~i~~~l~ 273 (531)
T TIGR02346 209 VLKGMVFNREA--EGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKG----E---------ENQIEAYIK 273 (531)
T ss_pred eEeeeEEeccC--CCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHH----H---------HHHHHHHHH
Confidence 44566665442 23567899999999999753 22222222221 0 011111222
Q ss_pred hhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHh
Q 018642 70 FVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILT 121 (352)
Q Consensus 70 ~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~t 121 (352)
.+... +.+++ +-..+.+|....+|.+++++++++.. ..++-...
T Consensus 274 ~i~~~----g~~lv-i~~~~I~d~~~~~l~~~~I~av~~~~---~~~l~~Ia 317 (531)
T TIGR02346 274 AIADS----GVNVI-VTGGSVGDMALHYCEKYNIMVLKIPS---KFELRRLC 317 (531)
T ss_pred HHHHc----CCcEE-EECCCcCHHHHHHHHHCCcEEEecCC---HHHHHHHH
Confidence 22221 24554 66778888888888888888888777 77777544
No 57
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=30.78 E-value=1.8e+02 Score=24.39 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCeEeec
Q 018642 111 KAIMRDIAILTGGRVVTA 128 (352)
Q Consensus 111 ~~~Ledia~~tG~~iis~ 128 (352)
...|+.||..+||+.+.-
T Consensus 142 ~~~l~~ia~~~gG~~~~~ 159 (171)
T cd01461 142 TYLLERLAREGRGIARRI 159 (171)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 367999999999987644
No 58
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=29.71 E-value=1.4e+02 Score=28.33 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=27.6
Q ss_pred HHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHhcC--ccccchHHH
Q 018642 191 LQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKAAMEEG--IIPGGGVAL 241 (352)
Q Consensus 191 l~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~a~~~g--vVpGGGaae 241 (352)
+.+|.++..+|++||+.-.. ++..+++.+-+...+. .... +|.|||..-
T Consensus 9 i~~~~~~~~ViKlGGs~i~~-~~~~~~~~~~i~~l~~-~g~~~ViVhG~g~~~ 59 (279)
T cd04250 9 IQKFRGKTVVIKYGGNAMKD-EELKESFARDIVLLKY-VGINPVVVHGGGPEI 59 (279)
T ss_pred HHHHcCCEEEEEEChHHhcC-ccHHHHHHHHHHHHHH-CCCCEEEEcCCcHHH
Confidence 45667889999999976321 1222334443332222 2223 788998844
No 59
>PLN02825 amino-acid N-acetyltransferase
Probab=28.99 E-value=2.8e+02 Score=29.30 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHhhcCceEEEEEcCcchHHHHHHHHHHHHHHHHHHH--HH-hcC-ccccchHHHHHHHH
Q 018642 191 LQMLSSRVAILKVGGATTAESRKKRKRATNALNAAKA--AM-EEG-IIPGGGVALLHASE 246 (352)
Q Consensus 191 l~~l~g~~atI~vgG~te~~l~E~er~i~DAl~a~k~--a~-~~g-vVpGGGaael~~s~ 246 (352)
+.++.|++-+|++||..-. ++ .+.+-+.-+.. .+ -.- +|.|||-.-=+...
T Consensus 12 I~~~rgktfVIk~gG~~l~--~~---~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~ 66 (515)
T PLN02825 12 IQGHRGSTFVVVISGEVVA--GP---HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLA 66 (515)
T ss_pred HHHHCCCEEEEEECchhhc--Cc---hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHH
Confidence 4567899999999995432 22 23322222221 22 123 78899875444333
No 60
>PRK06683 hypothetical protein; Provisional
Probab=27.41 E-value=1.5e+02 Score=23.17 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=18.3
Q ss_pred cccCCCcEEEEecCchhhhhhhhh
Q 018642 49 CNEVKRPLLVVANDVEEEVAGFVV 72 (352)
Q Consensus 49 ~~~~~~pllii~~~i~~~al~~l~ 72 (352)
+++...-|||+|+|+++....-+.
T Consensus 23 ik~gkaklViiA~Da~~~~~~~i~ 46 (82)
T PRK06683 23 IKNGIVKEVVIAEDADMRLTHVII 46 (82)
T ss_pred HHcCCeeEEEEECCCCHHHHHHHH
Confidence 444457899999999998777653
No 61
>COG4996 Predicted phosphatase [General function prediction only]
Probab=27.23 E-value=95 Score=27.06 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=57.4
Q ss_pred eEeeCceeeeecCCCCCH--------HHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEec-CCCC
Q 018642 20 LDLKNPFILIHENKILDK--------NIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVK-PPVF 90 (352)
Q Consensus 20 ~~l~~~~il~~d~~i~~~--------~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk-~p~~ 90 (352)
.+|+.|+-.+.-.+|.+. .++..++.. +..+|.-+=...+.+.+-|+..|..-.+..-+...+++ .|-+
T Consensus 18 Ssl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~w--arnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K 95 (164)
T COG4996 18 SSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKW--ARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYK 95 (164)
T ss_pred hhcCCcceecCccceecCCCeEEEEcHHHHHHHHH--HHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChh
Confidence 478889999888887754 457778888 88888877789999999999988876666667777887 6666
Q ss_pred CCchhh
Q 018642 91 EESWKA 96 (352)
Q Consensus 91 ~d~~~~ 96 (352)
+-|...
T Consensus 96 ~~ML~~ 101 (164)
T COG4996 96 FLMLSQ 101 (164)
T ss_pred HHHHHH
Confidence 654333
No 62
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=25.77 E-value=1.4e+02 Score=23.26 Aligned_cols=64 Identities=22% Similarity=0.178 Sum_probs=36.8
Q ss_pred cccCCCcEEEEec-CchhhhhhhhhhccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHHHHHHHhCCeEee
Q 018642 49 CNEVKRPLLVVAN-DVEEEVAGFVVTNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMRDIAILTGGRVVT 127 (352)
Q Consensus 49 ~~~~~~pllii~~-~i~~~al~~l~~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Ledia~~tG~~iis 127 (352)
....-.|++-|.. ++++..+..+-.. ++ ...++=||..+.. .+.+++..+.|+..|||.++.
T Consensus 12 ~a~~l~p~v~IGk~Glt~~vi~~i~~~-l~-~~eLvKVk~~~~~---------------~~~~~~~~~~l~~~t~~~~V~ 74 (84)
T PF01985_consen 12 LAHHLKPVVQIGKNGLTDGVIEEIDDA-LE-KHELVKVKVLGNC---------------REDRKEIAEQLAEKTGAEVVQ 74 (84)
T ss_dssp HHTTC--SEEE-TTSS-HHHHHHHHHH-HH-HHSEEEEEETT-----------------HHHHHHHHHHHHHHHTEEEEE
T ss_pred HhcCCCCeEEECCCCCCHHHHHHHHHH-HH-hCCeeEEEEccCC---------------HHHHHHHHHHHHHHhCCEEEE
Confidence 3443478888888 8888777754321 11 1334445543311 125778899999999999997
Q ss_pred cc
Q 018642 128 AA 129 (352)
Q Consensus 128 ~~ 129 (352)
..
T Consensus 75 ~i 76 (84)
T PF01985_consen 75 VI 76 (84)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 63
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.67 E-value=1.6e+02 Score=23.01 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.2
Q ss_pred cccCCCcEEEEecCchhhhhhhhh
Q 018642 49 CNEVKRPLLVVANDVEEEVAGFVV 72 (352)
Q Consensus 49 ~~~~~~pllii~~~i~~~al~~l~ 72 (352)
+++....|||+|.|+++.....+.
T Consensus 20 Ik~gkakLViiA~Da~~~~~k~i~ 43 (82)
T PRK13601 20 ITNCNVLQVYIAKDAEEHVTKKIK 43 (82)
T ss_pred HHcCCeeEEEEeCCCCHHHHHHHH
Confidence 444457899999999987777654
No 64
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=25.42 E-value=67 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=24.3
Q ss_pred EEEEEcCcchHHHHHHHHHHHHHHHHHH
Q 018642 199 AILKVGGATTAESRKKRKRATNALNAAK 226 (352)
Q Consensus 199 atI~vgG~te~~l~E~er~i~DAl~a~k 226 (352)
-||++.| ++..+++.+|.|+|-+++.+
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999999 78889999999999999975
No 65
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=2.6e+02 Score=25.45 Aligned_cols=70 Identities=24% Similarity=0.168 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHhhc----------------------cCHHHHHHHHHHHHhhcCceEEEEEcCcchHHHHHHHHHHH
Q 018642 162 VYIEDRCEQLSDAIEMS----------------------TSDYEIKLLEERLQMLSSRVAILKVGGATTAESRKKRKRAT 219 (352)
Q Consensus 162 ~~i~~ri~~l~~~~~~~----------------------~~~~e~~~L~eRl~~l~g~~atI~vgG~te~~l~E~er~i~ 219 (352)
..++.||++|++..... -++-+|+.+.-.+.||++..+|+-|+=.|.-- .+-++++.
T Consensus 52 D~lelrVE~LRk~A~~le~eKe~lL~s~~~I~~~~~M~~~se~eREEi~l~~~Rl~~Rt~TVev~VeT~Rn-~~Q~~sL~ 130 (219)
T KOG3633|consen 52 DSLELRVEKLRKDALNLEEEKEYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRLSSRTATVEVRVETVRN-NSQEDSLS 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHhcccceEEEEEeccCC-hHHHHHHH
Confidence 35778888888653211 15568888988999999999998887655322 34556676
Q ss_pred HHHHHHHHHHhcC
Q 018642 220 NALNAAKAAMEEG 232 (352)
Q Consensus 220 DAl~a~k~a~~~g 232 (352)
+|--.+-..++-|
T Consensus 131 ~at~lIDev~~m~ 143 (219)
T KOG3633|consen 131 QATVLIDEVIKMG 143 (219)
T ss_pred HHHHHHHHHHHhc
Confidence 6655555555544
No 66
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=24.93 E-value=2.9e+02 Score=23.51 Aligned_cols=53 Identities=6% Similarity=0.040 Sum_probs=33.2
Q ss_pred cEEEEecceEEEEcC------CCChhhHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhc
Q 018642 143 KKVKVTNNEMIIHGG------SGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLS 195 (352)
Q Consensus 143 ~~v~v~~~~~~~i~~------~~~~~~i~~ri~~l~~~~~~~~~~~e~~~L~eRl~~l~ 195 (352)
+-+++.+++.+++.. .-+....++..+..++++..+.++..+..++.++.+++
T Consensus 67 Gf~eV~~n~v~Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~ 125 (133)
T PRK14736 67 GFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQ 125 (133)
T ss_pred eEEEEECCEEEEEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 444566666555543 22455666666667776766677777777777776665
No 67
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=24.66 E-value=77 Score=28.84 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=10.5
Q ss_pred CccccchHH---HHHHH
Q 018642 232 GIIPGGGVA---LLHAS 245 (352)
Q Consensus 232 gvVpGGGaa---el~~s 245 (352)
.+|||||.. .-.+.
T Consensus 28 ~iV~GGG~~A~~~r~~~ 44 (203)
T cd04240 28 VIVPGGGPFADVVRRYQ 44 (203)
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 399999998 55544
No 68
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=24.30 E-value=5e+02 Score=22.96 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=22.0
Q ss_pred chhhhhHhhHHHHHHHHHHhCCeEeecc
Q 018642 102 CELVYEENCKAIMRDIAILTGGRVVTAA 129 (352)
Q Consensus 102 ~~~~~~~~r~~~Ledia~~tG~~iis~~ 129 (352)
|..+-.+.-++++++|+.+||+.|-.+.
T Consensus 99 C~vaag~~G~~fv~~L~~ltga~VAAS~ 126 (165)
T PF14252_consen 99 CNVAAGEEGQEFVQRLAQLTGADVAAST 126 (165)
T ss_pred CccCcchhHHHHHHHHHHHHCCCEEecC
Confidence 3444444667999999999999998886
No 69
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.59 E-value=1.1e+02 Score=25.32 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=35.0
Q ss_pred eeecCCCCCHHHHHHHHhhcccccCCCcEEEEecCchhhhhhhhhhccccccceEEEecCCC
Q 018642 28 LIHENKILDKNIFAQAIGAISCNEVKRPLLVVANDVEEEVAGFVVTNETFSKTKLCFVKPPV 89 (352)
Q Consensus 28 l~~d~~i~~~~~i~~~l~~~~~~~~~~pllii~~~i~~~al~~l~~n~~~~~~~v~avk~p~ 89 (352)
.+.|.. .++.....++. +.+.|.|+|+-+-+++++-+..|-. +... +-++-+|.
T Consensus 70 VvIDfT--~p~~~~~~~~~--~~~~g~~~ViGTTG~~~~~~~~l~~--~a~~--~~vl~a~N 123 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEY--ALKHGVPLVIGTTGFSDEQIDELEE--LAKK--IPVLIAPN 123 (124)
T ss_dssp EEEEES---HHHHHHHHHH--HHHHT-EEEEE-SSSHHHHHHHHHH--HTTT--SEEEE-SS
T ss_pred EEEEcC--ChHHhHHHHHH--HHhCCCCEEEECCCCCHHHHHHHHH--Hhcc--CCEEEeCC
Confidence 455654 67778888898 8888999999999999887776443 2222 34555554
No 70
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.94 E-value=2e+02 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=16.6
Q ss_pred cccCCCcEEEEecCchhhhhhhh
Q 018642 49 CNEVKRPLLVVANDVEEEVAGFV 71 (352)
Q Consensus 49 ~~~~~~pllii~~~i~~~al~~l 71 (352)
+.+-...|||+|+|+++.....+
T Consensus 23 i~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 23 LKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred HHcCCeeEEEEECCCCHHHHHHH
Confidence 44435789999999999755443
No 71
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=21.72 E-value=3.2e+02 Score=22.18 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHhhcccccCCCcEEEEec-Cchhhhhhhhh----hccccccceEEEecCCCCCCchhhhhcccchhhhhHhhHHHHH
Q 018642 41 AQAIGAISCNEVKRPLLVVAN-DVEEEVAGFVV----TNETFSKTKLCFVKPPVFEESWKAVYGENCELVYEENCKAIMR 115 (352)
Q Consensus 41 ~~~l~~~~~~~~~~pllii~~-~i~~~al~~l~----~n~~~~~~~v~avk~p~~~d~~~~~~~~~~~~~~~~~r~~~Le 115 (352)
...|.. ....=.|++.|.+ ++++.++.-+- .|.+ ++|=+.+ ...+ .|++..+
T Consensus 8 r~~LR~--~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hEL---IKvkv~~--~~~~----------------~~~e~~~ 64 (97)
T PRK10343 8 KQHLKG--LAHPLKPVVLLGSNGLTEGVLAEIEQALEHHEL---IKVKIAT--EDRE----------------TKTLIVE 64 (97)
T ss_pred HHHHHH--hcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCc---EEEEecC--CChh----------------HHHHHHH
Confidence 344555 4444479999988 88887776432 2322 3332221 1223 5788899
Q ss_pred HHHHHhCCeEeecc
Q 018642 116 DIAILTGGRVVTAA 129 (352)
Q Consensus 116 dia~~tG~~iis~~ 129 (352)
.||..||+.++...
T Consensus 65 ~i~~~~~ae~Vq~I 78 (97)
T PRK10343 65 AIVRETGACNVQVI 78 (97)
T ss_pred HHHHHHCCEEEeee
Confidence 99999999998654
No 72
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=20.58 E-value=1.8e+02 Score=28.70 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHHHHHhhccCHHHHHHHHHHHHhhcCc--eEEEEEcCcc-------------hHHHHHHHHHHHHHHHHHH------
Q 018642 168 CEQLSDAIEMSTSDYEIKLLEERLQMLSSR--VAILKVGGAT-------------TAESRKKRKRATNALNAAK------ 226 (352)
Q Consensus 168 i~~l~~~~~~~~~~~e~~~L~eRl~~l~g~--~atI~vgG~t-------------e~~l~E~er~i~DAl~a~k------ 226 (352)
++.++++..-.-++..-|+|++.++..... ..++.|+|-. +...+=.+..+.+-+..++
T Consensus 185 ~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~ 264 (326)
T PF06723_consen 185 IRYIREKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKT 264 (326)
T ss_dssp HHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666667888899999998876531 2355566532 2222222222222222222
Q ss_pred ------HHHhcC-ccccchHHHHHHHHHHhc
Q 018642 227 ------AAMEEG-IIPGGGVALLHASEELEK 250 (352)
Q Consensus 227 ------~a~~~g-vVpGGGaael~~s~~L~~ 250 (352)
..+++| ++.|||+-+--+...|.+
T Consensus 265 pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~ 295 (326)
T PF06723_consen 265 PPELAADILENGIVLTGGGALLRGLDEYISE 295 (326)
T ss_dssp -HHHHHHHHHH-EEEESGGGGSBTHHHHHHH
T ss_pred CHHHHHHHHHCCEEEEChhhhhccHHHHHHH
Confidence 234789 888999877666666654
No 73
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.20 E-value=1.1e+02 Score=26.94 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=29.2
Q ss_pred eeCceeeeecCCCCCH-----HHHHHHHhhcccccCCCcEEEEecCch
Q 018642 22 LKNPFILIHENKILDK-----NIFAQAIGAISCNEVKRPLLVVANDVE 64 (352)
Q Consensus 22 l~~~~il~~d~~i~~~-----~~i~~~l~~~~~~~~~~pllii~~~i~ 64 (352)
+.+|.+++.|.+.... +.+..+|.. ..+.++.++++.-+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~--~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRR--LRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHH--HHHcCCEEEEEeeccc
Confidence 3789999999986643 456677776 6665778888776653
Done!