Query 018643
Match_columns 352
No_of_seqs 216 out of 1152
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 1E-63 2.2E-68 453.2 14.4 165 1-167 1-187 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 1.8E-13 3.9E-18 104.5 9.5 64 256-319 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 1.5E-12 3.1E-17 99.7 9.4 61 259-319 4-64 (65)
4 KOG4005 Transcription factor X 99.3 2.5E-11 5.3E-16 114.6 12.3 81 257-339 66-146 (292)
5 KOG3584 cAMP response element 99.2 1.8E-11 4E-16 118.0 8.7 62 250-311 281-342 (348)
6 KOG4343 bZIP transcription fac 99.2 5.5E-11 1.2E-15 122.2 10.0 71 253-323 274-344 (655)
7 PF07716 bZIP_2: Basic region 99.1 3.9E-10 8.5E-15 83.7 8.9 50 260-310 5-54 (54)
8 KOG0709 CREB/ATF family transc 99.1 9.4E-11 2E-15 119.1 7.2 76 254-329 245-320 (472)
9 KOG0837 Transcriptional activa 98.6 2.3E-07 5.1E-12 88.9 9.4 68 249-316 195-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 4.3E-09 9.2E-14 86.1 -6.4 68 254-321 24-91 (92)
11 KOG4571 Activating transcripti 98.3 1.9E-06 4.2E-11 83.8 8.9 56 261-316 228-283 (294)
12 KOG3119 Basic region leucine z 98.0 1.9E-05 4.1E-10 76.3 8.7 59 261-319 195-253 (269)
13 KOG4196 bZIP transcription fac 97.6 0.00052 1.1E-08 60.1 10.1 67 257-330 50-116 (135)
14 PF07777 MFMR: G-box binding p 97.6 0.0003 6.5E-09 65.1 8.9 122 30-172 22-174 (189)
15 KOG3863 bZIP transcription fac 97.4 0.00034 7.4E-09 74.2 6.6 70 260-329 490-560 (604)
16 PF06156 DUF972: Protein of un 96.8 0.0067 1.4E-07 51.6 7.9 50 281-330 8-57 (107)
17 PRK13169 DNA replication intia 96.5 0.012 2.6E-07 50.4 7.9 49 281-329 8-56 (110)
18 PF06005 DUF904: Protein of un 96.4 0.022 4.8E-07 45.3 8.1 28 283-310 6-33 (72)
19 TIGR02894 DNA_bind_RsfA transc 96.4 0.01 2.2E-07 53.9 7.0 52 289-342 98-149 (161)
20 COG3074 Uncharacterized protei 96.3 0.018 3.9E-07 45.9 7.1 56 283-340 20-75 (79)
21 PRK10884 SH3 domain-containing 96.3 0.057 1.2E-06 50.7 11.5 47 280-326 124-170 (206)
22 PF10224 DUF2205: Predicted co 96.2 0.029 6.4E-07 45.5 7.8 48 283-330 18-65 (80)
23 TIGR02449 conserved hypothetic 96.2 0.035 7.6E-07 43.5 8.0 57 281-339 7-63 (65)
24 PRK15422 septal ring assembly 96.1 0.031 6.6E-07 45.3 7.4 58 282-341 19-76 (79)
25 PF06005 DUF904: Protein of un 95.9 0.056 1.2E-06 43.0 8.2 47 282-328 19-65 (72)
26 KOG4005 Transcription factor X 95.8 0.089 1.9E-06 50.8 10.6 89 250-340 62-156 (292)
27 COG3074 Uncharacterized protei 95.7 0.066 1.4E-06 42.7 7.5 53 279-331 23-75 (79)
28 PRK13729 conjugal transfer pil 95.6 0.061 1.3E-06 56.2 9.1 49 281-329 76-124 (475)
29 PF02183 HALZ: Homeobox associ 95.5 0.036 7.8E-07 40.3 5.3 38 292-329 2-39 (45)
30 PF08614 ATG16: Autophagy prot 95.4 0.19 4.2E-06 46.1 11.0 72 261-332 117-188 (194)
31 TIGR02449 conserved hypothetic 95.3 0.082 1.8E-06 41.4 7.0 47 283-329 2-48 (65)
32 PF13747 DUF4164: Domain of un 95.3 0.36 7.9E-06 39.7 11.1 75 255-329 6-80 (89)
33 PF04102 SlyX: SlyX; InterPro 95.3 0.095 2.1E-06 40.9 7.2 51 280-330 3-53 (69)
34 PRK10884 SH3 domain-containing 95.2 0.25 5.5E-06 46.4 11.3 54 279-332 116-169 (206)
35 PRK15422 septal ring assembly 95.0 0.13 2.7E-06 41.8 7.3 51 280-330 24-74 (79)
36 COG4467 Regulator of replicati 94.9 0.11 2.3E-06 44.6 7.1 47 281-327 8-54 (114)
37 PF04880 NUDE_C: NUDE protein, 94.9 0.038 8.2E-07 50.5 4.8 50 283-336 2-51 (166)
38 KOG1414 Transcriptional activa 94.9 0.0011 2.4E-08 67.3 -6.0 68 252-319 146-217 (395)
39 COG4026 Uncharacterized protei 94.7 0.18 3.9E-06 48.4 8.9 50 281-330 142-191 (290)
40 PF02183 HALZ: Homeobox associ 94.6 0.12 2.7E-06 37.5 5.9 42 285-326 2-43 (45)
41 KOG4196 bZIP transcription fac 94.6 0.3 6.4E-06 43.2 9.1 32 298-329 77-108 (135)
42 PRK02793 phi X174 lysis protei 94.5 0.26 5.6E-06 39.0 7.9 50 280-329 7-56 (72)
43 PRK00736 hypothetical protein; 94.5 0.28 6E-06 38.4 8.0 49 281-329 5-53 (68)
44 PRK02119 hypothetical protein; 94.5 0.27 5.8E-06 39.1 8.0 50 280-329 8-57 (73)
45 PRK04325 hypothetical protein; 94.5 0.28 6.2E-06 39.0 8.1 49 281-329 9-57 (74)
46 PRK00295 hypothetical protein; 94.5 0.29 6.2E-06 38.4 8.0 49 281-329 5-53 (68)
47 PRK04406 hypothetical protein; 94.2 0.33 7.2E-06 38.8 8.1 49 281-329 11-59 (75)
48 PF11559 ADIP: Afadin- and alp 94.2 0.68 1.5E-05 40.6 10.8 69 261-329 46-114 (151)
49 PF10473 CENP-F_leu_zip: Leuci 94.2 0.81 1.8E-05 40.8 11.2 66 264-329 35-100 (140)
50 TIGR00219 mreC rod shape-deter 94.0 0.11 2.5E-06 50.6 6.1 40 289-328 67-110 (283)
51 KOG1962 B-cell receptor-associ 93.9 0.35 7.6E-06 46.0 8.8 51 277-327 161-211 (216)
52 PRK11637 AmiB activator; Provi 93.8 0.82 1.8E-05 46.6 12.0 53 277-329 71-123 (428)
53 PF06156 DUF972: Protein of un 93.6 0.32 6.9E-06 41.4 7.2 53 285-339 5-57 (107)
54 PRK00846 hypothetical protein; 93.5 0.53 1.1E-05 38.1 8.1 50 280-329 12-61 (77)
55 PF10186 Atg14: UV radiation r 93.3 1.1 2.4E-05 42.3 11.4 50 277-326 59-108 (302)
56 KOG1853 LIS1-interacting prote 93.2 0.95 2.1E-05 44.4 10.7 61 281-343 52-123 (333)
57 PF09726 Macoilin: Transmembra 93.2 0.48 1E-05 51.9 9.7 41 284-324 541-581 (697)
58 KOG1029 Endocytic adaptor prot 93.2 0.64 1.4E-05 51.4 10.4 12 35-46 82-93 (1118)
59 PF08172 CASP_C: CASP C termin 93.1 0.35 7.7E-06 46.6 7.7 39 291-329 96-134 (248)
60 PRK13922 rod shape-determining 93.0 0.64 1.4E-05 44.5 9.3 41 288-328 69-112 (276)
61 smart00338 BRLZ basic region l 92.9 0.94 2E-05 34.4 8.3 40 287-326 25-64 (65)
62 PF07888 CALCOCO1: Calcium bin 92.8 1.1 2.4E-05 47.9 11.4 63 266-328 156-218 (546)
63 PRK11637 AmiB activator; Provi 92.7 1.3 2.8E-05 45.2 11.5 46 280-325 81-126 (428)
64 COG4026 Uncharacterized protei 92.5 0.55 1.2E-05 45.2 7.9 42 285-326 139-180 (290)
65 KOG3119 Basic region leucine z 92.4 0.57 1.2E-05 45.5 8.2 47 267-313 208-254 (269)
66 COG1579 Zn-ribbon protein, pos 92.4 1.8 3.9E-05 41.8 11.3 40 265-304 36-75 (239)
67 COG2433 Uncharacterized conser 92.2 0.48 1E-05 51.0 7.9 46 281-326 422-467 (652)
68 PF04977 DivIC: Septum formati 92.2 0.35 7.6E-06 37.3 5.3 24 283-306 26-49 (80)
69 TIGR02209 ftsL_broad cell divi 92.2 0.55 1.2E-05 37.0 6.4 45 295-339 24-68 (85)
70 PRK04406 hypothetical protein; 92.1 1.3 2.9E-05 35.4 8.5 55 283-339 6-60 (75)
71 KOG4343 bZIP transcription fac 92.0 0.6 1.3E-05 49.7 8.2 70 253-333 271-340 (655)
72 KOG3335 Predicted coiled-coil 92.0 0.21 4.5E-06 46.2 4.3 43 260-308 91-133 (181)
73 PF11932 DUF3450: Protein of u 91.9 2.7 5.9E-05 39.9 12.0 52 277-328 52-103 (251)
74 PF00170 bZIP_1: bZIP transcri 91.9 2.1 4.6E-05 32.5 9.1 37 288-324 26-62 (64)
75 TIGR03752 conj_TIGR03752 integ 91.9 0.49 1.1E-05 49.6 7.4 36 293-328 107-142 (472)
76 COG4942 Membrane-bound metallo 91.8 1.4 3.1E-05 45.7 10.4 73 260-332 38-110 (420)
77 PRK10803 tol-pal system protei 91.8 1.4 2.9E-05 42.7 9.8 47 282-328 55-101 (263)
78 PRK13169 DNA replication intia 91.8 0.78 1.7E-05 39.4 7.2 51 285-337 5-55 (110)
79 PF14197 Cep57_CLD_2: Centroso 91.6 1.3 2.8E-05 34.9 7.8 48 281-328 12-66 (69)
80 PRK02119 hypothetical protein; 91.6 1.6 3.4E-05 34.7 8.3 57 282-340 3-59 (73)
81 PF05700 BCAS2: Breast carcino 91.6 2.4 5.1E-05 39.9 11.0 55 275-330 163-217 (221)
82 KOG1029 Endocytic adaptor prot 91.5 1.6 3.4E-05 48.6 10.8 23 307-329 435-457 (1118)
83 PF07106 TBPIP: Tat binding pr 91.4 0.72 1.6E-05 41.3 7.1 52 279-330 84-137 (169)
84 PF03962 Mnd1: Mnd1 family; I 91.4 1.2 2.6E-05 41.2 8.6 16 311-326 112-127 (188)
85 PF07106 TBPIP: Tat binding pr 91.3 0.62 1.3E-05 41.6 6.6 24 284-307 82-105 (169)
86 PRK00888 ftsB cell division pr 91.1 0.9 1.9E-05 38.3 6.9 34 277-310 30-63 (105)
87 PF11932 DUF3450: Protein of u 91.1 3.8 8.3E-05 38.9 12.0 49 281-329 49-97 (251)
88 PF12718 Tropomyosin_1: Tropom 91.0 1.2 2.5E-05 39.6 7.9 44 283-326 16-59 (143)
89 KOG3650 Predicted coiled-coil 91.0 0.97 2.1E-05 38.5 7.0 45 287-331 62-106 (120)
90 PF01166 TSC22: TSC-22/dip/bun 90.9 0.25 5.4E-06 38.1 3.0 42 294-339 13-54 (59)
91 KOG1414 Transcriptional activa 90.9 0.042 9.2E-07 55.9 -1.5 65 251-322 277-341 (395)
92 PF13851 GAS: Growth-arrest sp 90.9 4.3 9.4E-05 37.9 11.9 63 254-316 66-128 (201)
93 PF11559 ADIP: Afadin- and alp 90.8 5.3 0.00011 35.0 11.8 50 279-328 71-120 (151)
94 PF10805 DUF2730: Protein of u 90.7 1.2 2.6E-05 37.5 7.4 47 282-328 43-91 (106)
95 PF12325 TMF_TATA_bd: TATA ele 90.6 1.4 3E-05 38.3 7.8 66 256-321 19-87 (120)
96 PF10226 DUF2216: Uncharacteri 90.5 4.9 0.00011 37.7 11.7 76 256-331 19-144 (195)
97 PRK02793 phi X174 lysis protei 90.5 2.3 4.9E-05 33.7 8.3 56 284-341 4-59 (72)
98 KOG2264 Exostosin EXT1L [Signa 90.5 1.3 2.7E-05 47.8 8.8 49 281-329 93-141 (907)
99 PF05266 DUF724: Protein of un 90.4 4.4 9.6E-05 37.7 11.4 27 265-291 94-120 (190)
100 PF15294 Leu_zip: Leucine zipp 90.3 0.84 1.8E-05 44.9 6.9 45 286-330 130-174 (278)
101 COG1579 Zn-ribbon protein, pos 90.2 2.7 5.9E-05 40.6 10.2 53 277-329 85-137 (239)
102 PRK00888 ftsB cell division pr 90.2 1.2 2.7E-05 37.5 7.0 43 282-324 28-70 (105)
103 PF09738 DUF2051: Double stran 90.2 1.6 3.5E-05 43.4 8.9 73 256-328 88-166 (302)
104 COG2900 SlyX Uncharacterized p 90.2 2.3 5E-05 34.1 8.0 51 280-330 7-57 (72)
105 PF07412 Geminin: Geminin; In 90.2 0.86 1.9E-05 42.9 6.6 43 284-330 128-170 (200)
106 PF07558 Shugoshin_N: Shugoshi 90.1 0.31 6.8E-06 35.5 2.9 30 296-325 15-44 (46)
107 PF08317 Spc7: Spc7 kinetochor 90.1 2.8 6.1E-05 41.5 10.6 49 281-329 209-257 (325)
108 KOG0982 Centrosomal protein Nu 90.1 2.7 5.9E-05 43.8 10.6 48 282-329 298-345 (502)
109 PF08172 CASP_C: CASP C termin 90.0 1.2 2.5E-05 43.1 7.6 48 277-324 89-136 (248)
110 PF04102 SlyX: SlyX; InterPro 90.0 1.9 4.2E-05 33.6 7.4 52 285-338 1-52 (69)
111 PF12709 Kinetocho_Slk19: Cent 89.8 1.8 4E-05 35.8 7.4 44 279-322 40-83 (87)
112 PF09744 Jnk-SapK_ap_N: JNK_SA 89.8 2.8 6E-05 38.1 9.3 24 292-315 86-109 (158)
113 COG4467 Regulator of replicati 89.7 1.4 3E-05 37.9 6.9 50 285-336 5-54 (114)
114 PF09726 Macoilin: Transmembra 89.6 34 0.00075 37.8 19.2 73 254-326 422-498 (697)
115 PF09304 Cortex-I_coil: Cortex 89.6 1.7 3.6E-05 37.3 7.2 54 265-318 21-74 (107)
116 PF10186 Atg14: UV radiation r 89.5 5.7 0.00012 37.5 11.7 34 277-310 66-99 (302)
117 COG3883 Uncharacterized protei 89.4 1.4 3E-05 43.2 7.5 54 276-329 54-111 (265)
118 TIGR02894 DNA_bind_RsfA transc 89.4 4.1 8.9E-05 37.3 10.0 38 279-316 109-146 (161)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.3 5.5 0.00012 34.5 10.6 31 298-328 101-131 (132)
120 PF07888 CALCOCO1: Calcium bin 89.3 4.6 9.9E-05 43.3 11.8 47 282-328 179-225 (546)
121 PF12325 TMF_TATA_bd: TATA ele 89.2 3.9 8.4E-05 35.5 9.5 13 316-328 96-108 (120)
122 PF04728 LPP: Lipoprotein leuc 89.1 3.9 8.4E-05 31.3 8.2 46 282-327 4-49 (56)
123 PF05266 DUF724: Protein of un 89.0 4.3 9.4E-05 37.7 10.2 50 279-328 129-178 (190)
124 PF04156 IncA: IncA protein; 89.0 7.8 0.00017 34.9 11.7 52 276-327 125-176 (191)
125 PF05377 FlaC_arch: Flagella a 88.9 1.8 3.9E-05 33.0 6.2 36 283-318 2-37 (55)
126 PRK09039 hypothetical protein; 88.5 4.8 0.0001 40.4 11.0 38 290-327 139-176 (343)
127 PF14197 Cep57_CLD_2: Centroso 88.4 3.1 6.8E-05 32.8 7.6 21 287-307 11-31 (69)
128 PF07716 bZIP_2: Basic region 88.4 6.1 0.00013 29.1 8.8 28 295-322 25-52 (54)
129 PRK00846 hypothetical protein; 88.4 3.3 7.2E-05 33.5 7.9 58 284-343 9-66 (77)
130 PF08647 BRE1: BRE1 E3 ubiquit 88.2 10 0.00022 31.4 10.9 67 263-329 6-72 (96)
131 KOG0977 Nuclear envelope prote 88.2 1.7 3.7E-05 46.4 7.9 56 275-330 135-190 (546)
132 PF04999 FtsL: Cell division p 88.2 1.7 3.7E-05 35.3 6.3 48 292-339 32-79 (97)
133 PF14662 CCDC155: Coiled-coil 88.2 3.1 6.7E-05 39.1 8.6 42 284-325 98-139 (193)
134 PF04849 HAP1_N: HAP1 N-termin 88.1 1.3 2.9E-05 44.1 6.6 36 294-329 212-247 (306)
135 PRK04325 hypothetical protein; 88.0 2.8 6.1E-05 33.3 7.2 55 283-339 4-58 (74)
136 PF04111 APG6: Autophagy prote 88.0 8.8 0.00019 38.2 12.3 21 304-324 101-121 (314)
137 PF05103 DivIVA: DivIVA protei 88.0 0.27 5.9E-06 41.5 1.6 48 281-328 25-72 (131)
138 PF05377 FlaC_arch: Flagella a 87.9 1.9 4.2E-05 32.9 5.8 38 290-327 2-39 (55)
139 PF13815 Dzip-like_N: Iguana/D 87.8 1.8 3.9E-05 36.9 6.5 39 286-324 78-116 (118)
140 KOG0804 Cytoplasmic Zn-finger 87.8 4.8 0.0001 42.2 10.5 78 265-344 369-454 (493)
141 PF12711 Kinesin-relat_1: Kine 87.7 2.9 6.2E-05 34.6 7.3 37 293-329 22-64 (86)
142 PF10669 Phage_Gp23: Protein g 87.7 5.6 0.00012 34.0 9.1 48 252-303 47-94 (121)
143 KOG1103 Predicted coiled-coil 87.5 2.4 5.2E-05 43.4 8.1 60 270-329 227-286 (561)
144 PF10473 CENP-F_leu_zip: Leuci 87.5 8.6 0.00019 34.3 10.7 45 293-339 57-101 (140)
145 PF10211 Ax_dynein_light: Axon 87.4 3.2 6.9E-05 38.4 8.3 55 283-338 122-176 (189)
146 PF04977 DivIC: Septum formati 87.4 2.5 5.4E-05 32.4 6.5 38 298-335 20-58 (80)
147 COG3883 Uncharacterized protei 87.3 2.5 5.3E-05 41.5 7.8 51 279-329 50-100 (265)
148 KOG4571 Activating transcripti 87.2 4.1 8.9E-05 40.5 9.3 55 259-313 230-287 (294)
149 PRK00295 hypothetical protein; 87.1 3.9 8.5E-05 32.0 7.4 51 286-338 3-53 (68)
150 PF05278 PEARLI-4: Arabidopsis 87.1 10 0.00022 37.3 11.9 49 280-328 206-254 (269)
151 PRK14162 heat shock protein Gr 86.8 1.7 3.8E-05 40.6 6.3 27 289-315 47-73 (194)
152 PF13870 DUF4201: Domain of un 86.8 10 0.00022 34.2 11.0 59 281-339 91-149 (177)
153 PF10224 DUF2205: Predicted co 86.8 3.2 6.8E-05 33.8 6.9 33 283-315 32-64 (80)
154 PF06785 UPF0242: Uncharacteri 86.6 6.5 0.00014 40.0 10.4 51 278-328 124-174 (401)
155 PF09744 Jnk-SapK_ap_N: JNK_SA 86.4 8 0.00017 35.1 10.1 46 284-329 92-137 (158)
156 KOG1318 Helix loop helix trans 86.3 8.9 0.00019 39.8 11.5 28 261-288 230-257 (411)
157 PF12329 TMF_DNA_bd: TATA elem 86.3 5.2 0.00011 31.8 7.9 51 279-329 10-60 (74)
158 PF09755 DUF2046: Uncharacteri 86.3 2.3 5E-05 42.5 7.1 34 289-322 28-61 (310)
159 PF08826 DMPK_coil: DMPK coile 86.3 5.3 0.00012 31.0 7.6 43 287-329 17-59 (61)
160 KOG0971 Microtubule-associated 86.2 8.1 0.00018 43.8 11.7 28 300-327 330-357 (1243)
161 PF08614 ATG16: Autophagy prot 86.2 10 0.00022 34.8 10.8 42 287-328 129-170 (194)
162 PF04156 IncA: IncA protein; 86.1 14 0.0003 33.2 11.6 45 284-328 126-170 (191)
163 PF05529 Bap31: B-cell recepto 86.1 5.6 0.00012 36.2 9.1 37 293-329 152-188 (192)
164 PRK10803 tol-pal system protei 86.0 2.1 4.5E-05 41.4 6.5 51 276-326 56-106 (263)
165 PF12808 Mto2_bdg: Micro-tubul 86.0 2.8 6.1E-05 31.6 5.8 47 279-328 2-48 (52)
166 KOG0250 DNA repair protein RAD 85.9 7.3 0.00016 44.7 11.5 34 295-328 394-427 (1074)
167 PRK14143 heat shock protein Gr 85.9 2.3 5.1E-05 40.9 6.7 19 285-303 85-103 (238)
168 PF04728 LPP: Lipoprotein leuc 85.7 4.6 9.9E-05 30.9 6.9 41 288-328 3-43 (56)
169 KOG2391 Vacuolar sorting prote 85.7 7.9 0.00017 39.4 10.5 64 255-327 215-278 (365)
170 PF10211 Ax_dynein_light: Axon 85.6 7.3 0.00016 36.0 9.7 48 280-327 126-188 (189)
171 PF15397 DUF4618: Domain of un 85.6 11 0.00023 37.0 11.1 73 256-330 140-221 (258)
172 PF11180 DUF2968: Protein of u 85.6 16 0.00034 34.5 11.7 83 256-341 102-184 (192)
173 PF08826 DMPK_coil: DMPK coile 85.5 8.9 0.00019 29.7 8.5 36 281-316 25-60 (61)
174 PRK14155 heat shock protein Gr 85.5 1.7 3.6E-05 41.1 5.4 16 286-301 32-47 (208)
175 smart00340 HALZ homeobox assoc 85.3 1.7 3.7E-05 31.5 4.2 26 305-330 8-33 (44)
176 PRK14158 heat shock protein Gr 85.3 2.6 5.6E-05 39.5 6.5 23 282-304 55-77 (194)
177 PRK03992 proteasome-activating 85.1 2.8 6E-05 42.4 7.2 60 284-343 4-64 (389)
178 PTZ00454 26S protease regulato 85.1 3.5 7.7E-05 42.2 8.0 47 296-342 30-77 (398)
179 PF04849 HAP1_N: HAP1 N-termin 85.0 8.3 0.00018 38.6 10.2 48 280-327 240-287 (306)
180 PF15035 Rootletin: Ciliary ro 84.9 4.1 8.8E-05 37.7 7.6 37 289-325 75-111 (182)
181 PRK10698 phage shock protein P 84.7 12 0.00025 35.5 10.8 70 272-341 87-159 (222)
182 PF07407 Seadorna_VP6: Seadorn 84.7 1.7 3.7E-05 44.0 5.3 22 293-314 37-58 (420)
183 PF08232 Striatin: Striatin fa 84.6 6.8 0.00015 34.4 8.5 54 282-335 26-79 (134)
184 COG1792 MreC Cell shape-determ 84.5 2.8 6.1E-05 41.1 6.8 48 279-330 64-111 (284)
185 PF11500 Cut12: Spindle pole b 84.5 9.5 0.0002 34.6 9.5 57 257-313 81-137 (152)
186 PF11365 DUF3166: Protein of u 84.4 3.5 7.6E-05 34.7 6.3 46 283-328 3-48 (96)
187 PRK00736 hypothetical protein; 84.4 5 0.00011 31.4 6.8 53 285-339 2-54 (68)
188 KOG0288 WD40 repeat protein Ti 84.3 7.7 0.00017 40.4 9.9 22 283-304 50-71 (459)
189 KOG0977 Nuclear envelope prote 84.2 8.3 0.00018 41.4 10.5 61 265-325 132-192 (546)
190 KOG2010 Double stranded RNA bi 84.2 4.2 9.2E-05 41.2 7.8 49 280-328 153-201 (405)
191 PRK13729 conjugal transfer pil 84.1 3.5 7.6E-05 43.4 7.6 49 280-328 82-130 (475)
192 PF12709 Kinetocho_Slk19: Cent 84.1 3.5 7.7E-05 34.1 6.1 42 287-328 33-75 (87)
193 PF04871 Uso1_p115_C: Uso1 / p 84.1 20 0.00043 31.6 11.3 46 283-328 57-110 (136)
194 KOG1962 B-cell receptor-associ 84.1 8.2 0.00018 36.9 9.4 36 291-326 154-189 (216)
195 KOG4797 Transcriptional regula 84.1 2.2 4.9E-05 36.8 5.1 29 295-323 67-95 (123)
196 PF06216 RTBV_P46: Rice tungro 83.9 5.4 0.00012 39.3 8.2 46 267-315 67-112 (389)
197 cd07596 BAR_SNX The Bin/Amphip 83.8 15 0.00032 32.7 10.7 62 264-328 114-182 (218)
198 PRK14148 heat shock protein Gr 83.7 3.3 7.2E-05 38.8 6.6 58 285-342 44-101 (195)
199 KOG0995 Centromere-associated 83.7 5.9 0.00013 42.6 9.1 49 280-328 279-327 (581)
200 PF02403 Seryl_tRNA_N: Seryl-t 83.6 5.8 0.00013 32.7 7.4 30 299-328 71-100 (108)
201 KOG4001 Axonemal dynein light 83.6 13 0.00028 35.6 10.4 29 303-331 229-257 (259)
202 KOG0946 ER-Golgi vesicle-tethe 83.5 11 0.00023 42.4 11.0 63 267-329 657-719 (970)
203 PRK14160 heat shock protein Gr 83.4 4 8.6E-05 38.8 7.0 61 283-343 63-123 (211)
204 smart00787 Spc7 Spc7 kinetocho 83.4 15 0.00034 36.6 11.5 47 282-328 205-251 (312)
205 PF09304 Cortex-I_coil: Cortex 83.4 25 0.00055 30.2 11.1 44 281-324 30-73 (107)
206 PF07989 Microtub_assoc: Micro 83.4 5.9 0.00013 31.7 6.9 27 285-311 4-30 (75)
207 PF15556 Zwint: ZW10 interacto 83.3 22 0.00048 34.1 11.7 62 265-326 118-179 (252)
208 PF10805 DUF2730: Protein of u 83.1 15 0.00032 31.0 9.6 50 279-328 47-98 (106)
209 PRK09039 hypothetical protein; 83.1 4.6 0.0001 40.6 7.7 40 289-328 124-163 (343)
210 PRK14140 heat shock protein Gr 83.1 2.8 6.1E-05 39.1 5.8 58 283-340 39-96 (191)
211 PF15058 Speriolin_N: Sperioli 83.0 3.1 6.6E-05 39.2 5.9 39 283-329 7-45 (200)
212 TIGR03545 conserved hypothetic 82.7 8.4 0.00018 41.4 9.9 64 261-324 171-241 (555)
213 KOG2391 Vacuolar sorting prote 82.6 6.2 0.00013 40.1 8.3 55 276-330 220-274 (365)
214 PF05667 DUF812: Protein of un 82.6 5.6 0.00012 43.0 8.6 44 283-326 337-380 (594)
215 PRK14127 cell division protein 82.5 3.3 7.1E-05 35.6 5.5 40 281-320 30-69 (109)
216 TIGR02977 phageshock_pspA phag 82.5 11 0.00023 35.4 9.4 56 280-335 98-153 (219)
217 PF14662 CCDC155: Coiled-coil 82.4 6.2 0.00014 37.1 7.7 49 280-328 66-114 (193)
218 PF02403 Seryl_tRNA_N: Seryl-t 82.4 16 0.00034 30.1 9.5 18 310-327 75-92 (108)
219 PF13851 GAS: Growth-arrest sp 82.1 23 0.00051 33.0 11.5 48 281-328 69-119 (201)
220 PF13118 DUF3972: Protein of u 82.0 5.8 0.00012 35.0 6.9 46 283-328 80-125 (126)
221 COG2919 Septum formation initi 82.0 23 0.00049 30.3 10.5 36 296-331 51-86 (117)
222 KOG0982 Centrosomal protein Nu 82.0 12 0.00027 39.2 10.3 55 276-332 280-334 (502)
223 KOG0971 Microtubule-associated 81.7 11 0.00024 42.8 10.5 47 284-330 328-389 (1243)
224 TIGR02231 conserved hypothetic 81.3 19 0.00041 37.8 11.8 47 284-330 127-173 (525)
225 PF10146 zf-C4H2: Zinc finger- 81.3 23 0.0005 34.0 11.4 43 287-329 59-101 (230)
226 PF13815 Dzip-like_N: Iguana/D 81.3 5.8 0.00013 33.8 6.6 39 291-329 76-114 (118)
227 KOG0709 CREB/ATF family transc 81.1 4.2 9.1E-05 42.7 6.7 40 290-329 274-313 (472)
228 PF04012 PspA_IM30: PspA/IM30 81.0 20 0.00043 33.1 10.7 67 270-336 84-153 (221)
229 PRK14153 heat shock protein Gr 80.9 3.4 7.5E-05 38.7 5.5 25 281-305 47-71 (194)
230 PF08961 DUF1875: Domain of un 80.9 0.5 1.1E-05 45.2 0.0 45 277-321 118-162 (243)
231 PRK14161 heat shock protein Gr 80.9 4.5 9.7E-05 37.3 6.2 54 289-342 27-80 (178)
232 KOG0288 WD40 repeat protein Ti 80.8 17 0.00037 37.9 10.8 35 282-316 42-76 (459)
233 KOG0980 Actin-binding protein 80.6 11 0.00025 42.5 10.1 76 264-341 449-524 (980)
234 PF00038 Filament: Intermediat 80.6 32 0.00069 33.2 12.3 39 290-328 211-249 (312)
235 PF04201 TPD52: Tumour protein 80.2 8.7 0.00019 35.2 7.7 9 322-330 108-116 (162)
236 PRK05431 seryl-tRNA synthetase 80.1 26 0.00057 36.2 12.2 23 303-325 74-96 (425)
237 COG1382 GimC Prefoldin, chaper 80.1 8.4 0.00018 33.7 7.2 35 281-315 70-104 (119)
238 PRK14145 heat shock protein Gr 80.0 5.8 0.00013 37.3 6.7 56 286-341 50-105 (196)
239 KOG0249 LAR-interacting protei 79.9 14 0.00031 41.0 10.4 41 289-329 217-257 (916)
240 PF03980 Nnf1: Nnf1 ; InterPr 79.8 2.9 6.3E-05 34.8 4.3 30 279-308 78-107 (109)
241 PF07889 DUF1664: Protein of u 79.6 19 0.00042 31.6 9.4 53 277-329 64-116 (126)
242 PF14282 FlxA: FlxA-like prote 79.4 8.4 0.00018 32.4 6.9 47 284-330 29-79 (106)
243 COG4717 Uncharacterized conser 79.3 12 0.00026 42.3 9.8 72 269-340 729-819 (984)
244 KOG2077 JNK/SAPK-associated pr 79.3 4.4 9.5E-05 43.8 6.3 47 284-330 325-371 (832)
245 KOG4593 Mitotic checkpoint pro 79.1 13 0.00028 40.9 9.8 65 266-330 483-580 (716)
246 PF12718 Tropomyosin_1: Tropom 79.0 10 0.00022 33.6 7.7 53 277-329 31-86 (143)
247 PF01166 TSC22: TSC-22/dip/bun 78.9 2.6 5.7E-05 32.5 3.4 25 283-307 16-40 (59)
248 TIGR02209 ftsL_broad cell divi 78.6 7.3 0.00016 30.6 6.0 31 278-308 28-58 (85)
249 PF04859 DUF641: Plant protein 78.6 6.5 0.00014 34.8 6.2 43 282-324 88-130 (131)
250 PF07047 OPA3: Optic atrophy 3 78.6 4.6 0.0001 35.3 5.3 37 259-301 96-132 (134)
251 PF04871 Uso1_p115_C: Uso1 / p 78.6 36 0.00078 30.0 10.9 6 334-339 107-112 (136)
252 PF15030 DUF4527: Protein of u 78.5 18 0.00039 35.4 9.6 60 256-315 11-71 (277)
253 TIGR03752 conj_TIGR03752 integ 78.3 19 0.00041 38.1 10.4 27 303-329 110-136 (472)
254 PF10168 Nup88: Nuclear pore c 78.3 13 0.00028 41.1 9.8 8 78-86 272-279 (717)
255 PF14916 CCDC92: Coiled-coil d 78.1 4.4 9.6E-05 31.4 4.4 43 281-326 3-45 (60)
256 PF12808 Mto2_bdg: Micro-tubul 78.1 6.8 0.00015 29.5 5.3 28 282-309 23-50 (52)
257 PTZ00454 26S protease regulato 78.0 9.1 0.0002 39.2 8.0 38 286-323 27-64 (398)
258 PF05529 Bap31: B-cell recepto 78.0 13 0.00029 33.7 8.4 22 296-317 162-183 (192)
259 TIGR00606 rad50 rad50. This fa 78.0 19 0.0004 42.2 11.4 14 273-286 849-862 (1311)
260 PRK14157 heat shock protein Gr 77.9 6.1 0.00013 38.0 6.3 14 277-290 101-114 (227)
261 PF00038 Filament: Intermediat 77.9 32 0.0007 33.1 11.4 31 278-308 220-250 (312)
262 PF05278 PEARLI-4: Arabidopsis 77.7 36 0.00078 33.6 11.6 41 288-328 207-247 (269)
263 PF05812 Herpes_BLRF2: Herpesv 77.6 4 8.6E-05 35.6 4.5 29 279-307 1-29 (118)
264 PRK14144 heat shock protein Gr 77.6 6.9 0.00015 36.9 6.4 15 285-299 63-77 (199)
265 PF14645 Chibby: Chibby family 77.5 9 0.0002 33.0 6.7 42 284-325 74-115 (116)
266 PF13935 Ead_Ea22: Ead/Ea22-li 77.3 25 0.00054 30.9 9.6 48 281-328 90-138 (139)
267 KOG4643 Uncharacterized coiled 77.3 21 0.00046 41.0 11.0 76 253-328 490-587 (1195)
268 PF09789 DUF2353: Uncharacteri 77.3 21 0.00046 36.0 10.1 47 284-330 68-114 (319)
269 PF15035 Rootletin: Ciliary ro 77.2 12 0.00027 34.5 7.9 30 286-315 86-115 (182)
270 PF01486 K-box: K-box region; 77.1 9.8 0.00021 31.2 6.6 46 281-326 49-99 (100)
271 PF11544 Spc42p: Spindle pole 77.1 19 0.00042 29.2 7.9 37 287-323 18-54 (76)
272 TIGR02231 conserved hypothetic 77.0 26 0.00056 36.8 11.2 47 290-338 126-172 (525)
273 smart00340 HALZ homeobox assoc 76.7 6.1 0.00013 28.8 4.4 27 282-308 6-32 (44)
274 PF03670 UPF0184: Uncharacteri 76.7 17 0.00037 29.9 7.7 48 282-329 27-74 (83)
275 PF12999 PRKCSH-like: Glucosid 76.4 16 0.00035 33.8 8.4 36 274-309 139-174 (176)
276 PF04568 IATP: Mitochondrial A 76.4 15 0.00033 31.1 7.6 46 266-311 54-99 (100)
277 TIGR00414 serS seryl-tRNA synt 76.3 22 0.00047 36.7 10.2 29 299-327 73-101 (418)
278 PF05557 MAD: Mitotic checkpoi 76.2 11 0.00025 41.1 8.6 51 282-332 511-589 (722)
279 PF10205 KLRAQ: Predicted coil 76.0 19 0.0004 30.8 8.0 21 307-327 45-65 (102)
280 PF11180 DUF2968: Protein of u 76.0 27 0.00059 32.9 9.8 30 287-316 153-182 (192)
281 PF14817 HAUS5: HAUS augmin-li 75.8 10 0.00023 41.4 8.1 38 284-321 82-119 (632)
282 PF06210 DUF1003: Protein of u 75.8 13 0.00029 31.7 7.1 51 265-320 55-105 (108)
283 PRK02224 chromosome segregatio 75.6 31 0.00067 38.2 11.9 11 283-293 511-521 (880)
284 PF08537 NBP1: Fungal Nap bind 75.6 27 0.00057 35.4 10.2 23 260-282 122-144 (323)
285 PF13935 Ead_Ea22: Ead/Ea22-li 75.6 19 0.00042 31.6 8.4 33 279-311 79-113 (139)
286 PF15070 GOLGA2L5: Putative go 75.3 30 0.00066 37.7 11.4 20 278-297 119-138 (617)
287 PRK04863 mukB cell division pr 75.2 29 0.00063 41.6 12.0 15 264-278 325-339 (1486)
288 PF10226 DUF2216: Uncharacteri 75.1 19 0.00042 33.9 8.6 34 296-329 49-82 (195)
289 PF10779 XhlA: Haemolysin XhlA 75.1 15 0.00032 28.7 6.7 40 284-323 16-55 (71)
290 PHA03162 hypothetical protein; 75.0 2.1 4.6E-05 37.9 2.2 27 278-304 10-36 (135)
291 COG2919 Septum formation initi 74.8 12 0.00026 32.0 6.7 46 283-328 52-97 (117)
292 KOG0249 LAR-interacting protei 74.7 25 0.00054 39.2 10.4 55 281-337 216-270 (916)
293 PF04880 NUDE_C: NUDE protein, 74.7 2.5 5.5E-05 38.7 2.7 29 297-326 26-54 (166)
294 COG4372 Uncharacterized protei 74.7 36 0.00078 35.6 11.0 40 290-329 139-178 (499)
295 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.6 56 0.0012 28.2 11.2 20 310-329 99-118 (132)
296 PRK15396 murein lipoprotein; P 74.1 22 0.00048 28.8 7.7 46 282-327 26-71 (78)
297 KOG2891 Surface glycoprotein [ 74.1 33 0.00072 34.5 10.3 23 272-294 353-375 (445)
298 PF03962 Mnd1: Mnd1 family; I 74.0 40 0.00087 31.2 10.4 23 276-298 105-127 (188)
299 cd07596 BAR_SNX The Bin/Amphip 73.9 57 0.0012 29.0 11.2 53 276-328 112-171 (218)
300 COG2900 SlyX Uncharacterized p 73.8 22 0.00047 28.6 7.4 56 284-341 4-59 (72)
301 KOG0483 Transcription factor H 73.8 5.7 0.00012 37.4 4.8 41 287-327 111-151 (198)
302 KOG0161 Myosin class II heavy 73.8 17 0.00038 44.4 9.8 67 265-331 1644-1710(1930)
303 KOG1853 LIS1-interacting prote 73.7 23 0.0005 35.1 9.0 48 279-326 131-181 (333)
304 PF13863 DUF4200: Domain of un 73.5 37 0.00081 28.4 9.4 29 300-328 79-107 (126)
305 COG2433 Uncharacterized conser 73.5 31 0.00068 37.7 10.7 25 283-307 438-462 (652)
306 KOG3248 Transcription factor T 73.4 10 0.00022 38.7 6.7 53 26-81 72-128 (421)
307 PRK03992 proteasome-activating 73.3 11 0.00023 38.2 7.1 41 283-323 10-50 (389)
308 PF14988 DUF4515: Domain of un 73.2 56 0.0012 30.7 11.3 47 283-329 151-197 (206)
309 PHA03155 hypothetical protein; 73.2 4.5 9.7E-05 35.1 3.7 25 282-306 9-33 (115)
310 KOG0239 Kinesin (KAR3 subfamil 73.1 38 0.00083 37.3 11.6 19 316-334 300-318 (670)
311 KOG0933 Structural maintenance 73.1 34 0.00073 39.5 11.2 50 280-329 814-863 (1174)
312 PRK12705 hypothetical protein; 73.1 51 0.0011 35.2 12.2 43 286-328 93-135 (508)
313 TIGR03185 DNA_S_dndD DNA sulfu 73.0 35 0.00076 36.9 11.2 46 282-327 422-467 (650)
314 PF11365 DUF3166: Protein of u 72.8 13 0.00029 31.3 6.3 39 291-329 4-42 (96)
315 PF07407 Seadorna_VP6: Seadorn 72.8 12 0.00025 38.2 6.9 12 282-293 47-58 (420)
316 PF09730 BicD: Microtubule-ass 72.5 33 0.00071 38.2 10.9 39 291-329 100-141 (717)
317 PF08232 Striatin: Striatin fa 72.5 22 0.00047 31.3 7.9 59 265-323 16-74 (134)
318 TIGR01554 major_cap_HK97 phage 72.4 20 0.00044 35.8 8.7 26 282-307 35-60 (378)
319 COG1196 Smc Chromosome segrega 72.4 33 0.00072 39.7 11.5 42 283-324 441-482 (1163)
320 KOG2264 Exostosin EXT1L [Signa 72.3 36 0.00077 37.3 10.7 44 280-323 106-149 (907)
321 TIGR02680 conserved hypothetic 72.3 36 0.00078 40.3 11.9 65 270-335 266-330 (1353)
322 PRK11546 zraP zinc resistance 72.3 14 0.00031 33.2 6.8 44 279-322 59-109 (143)
323 PF07200 Mod_r: Modifier of ru 72.2 20 0.00042 31.2 7.6 49 265-314 40-88 (150)
324 PRK14160 heat shock protein Gr 72.1 23 0.00049 33.7 8.5 37 285-321 58-94 (211)
325 PF15136 UPF0449: Uncharacteri 72.0 20 0.00043 30.4 7.1 40 288-327 57-96 (97)
326 PF06810 Phage_GP20: Phage min 71.8 14 0.00031 33.2 6.7 34 279-312 32-68 (155)
327 PF15236 CCDC66: Coiled-coil d 71.6 82 0.0018 28.8 14.0 43 248-290 40-82 (157)
328 PF01920 Prefoldin_2: Prefoldi 71.6 13 0.00027 30.0 5.9 38 291-328 65-102 (106)
329 PF13805 Pil1: Eisosome compon 71.4 28 0.0006 34.4 9.1 46 282-327 166-213 (271)
330 PF08581 Tup_N: Tup N-terminal 71.2 32 0.0007 27.9 8.0 47 282-328 26-76 (79)
331 PF09738 DUF2051: Double stran 71.1 48 0.001 33.2 10.8 51 281-331 112-162 (302)
332 KOG3819 Uncharacterized conser 71.1 38 0.00082 35.9 10.4 77 254-330 48-174 (513)
333 COG4942 Membrane-bound metallo 70.9 32 0.0007 35.9 9.9 36 283-318 75-110 (420)
334 PRK14872 rod shape-determining 70.8 19 0.00041 36.6 8.0 39 288-326 57-98 (337)
335 KOG4360 Uncharacterized coiled 70.6 16 0.00035 39.1 7.7 49 281-329 219-267 (596)
336 PF06810 Phage_GP20: Phage min 70.6 37 0.0008 30.5 9.1 38 282-319 28-68 (155)
337 PF06216 RTBV_P46: Rice tungro 70.6 11 0.00025 37.1 6.2 50 281-330 64-113 (389)
338 PF12999 PRKCSH-like: Glucosid 70.5 30 0.00066 32.1 8.7 10 207-216 89-98 (176)
339 PF10482 CtIP_N: Tumour-suppre 70.4 25 0.00055 30.7 7.6 48 281-328 14-61 (120)
340 PF07798 DUF1640: Protein of u 70.3 19 0.00041 32.7 7.3 46 284-329 47-93 (177)
341 PF05600 DUF773: Protein of un 70.3 27 0.00059 37.1 9.4 58 268-327 435-492 (507)
342 KOG2129 Uncharacterized conser 70.2 5.2 0.00011 41.8 4.0 40 284-323 46-85 (552)
343 PRK13922 rod shape-determining 70.2 18 0.00039 34.7 7.5 35 282-316 70-107 (276)
344 PF07334 IFP_35_N: Interferon- 70.1 8.8 0.00019 31.1 4.5 26 291-316 3-28 (76)
345 KOG2236 Uncharacterized conser 69.9 7.2 0.00016 41.0 5.0 30 47-84 424-453 (483)
346 KOG0980 Actin-binding protein 69.9 40 0.00088 38.3 10.8 75 254-328 369-450 (980)
347 PF10146 zf-C4H2: Zinc finger- 69.7 22 0.00048 34.1 7.9 44 281-324 60-103 (230)
348 COG1340 Uncharacterized archae 69.6 76 0.0017 31.8 11.8 46 284-329 44-89 (294)
349 PLN02678 seryl-tRNA synthetase 69.5 37 0.00079 35.7 10.1 29 299-327 75-103 (448)
350 PF05667 DUF812: Protein of un 69.4 17 0.00037 39.4 7.9 49 281-329 328-376 (594)
351 COG1196 Smc Chromosome segrega 69.3 39 0.00084 39.2 11.1 14 27-40 527-540 (1163)
352 PF09766 FimP: Fms-interacting 69.2 23 0.00049 35.9 8.3 52 276-327 103-154 (355)
353 KOG0999 Microtubule-associated 69.2 32 0.00068 37.5 9.5 42 288-329 170-214 (772)
354 PF07200 Mod_r: Modifier of ru 69.1 33 0.00072 29.8 8.3 44 285-328 45-88 (150)
355 COG1340 Uncharacterized archae 69.1 49 0.0011 33.1 10.3 44 282-325 49-92 (294)
356 COG1730 GIM5 Predicted prefold 69.0 24 0.00052 31.7 7.5 31 294-324 107-137 (145)
357 PF13514 AAA_27: AAA domain 69.0 55 0.0012 37.7 12.2 49 291-339 892-940 (1111)
358 PF13094 CENP-Q: CENP-Q, a CEN 68.8 22 0.00048 31.5 7.3 54 281-334 41-94 (160)
359 TIGR03185 DNA_S_dndD DNA sulfu 68.8 63 0.0014 34.9 12.1 24 284-307 212-235 (650)
360 PF14282 FlxA: FlxA-like prote 68.7 23 0.00051 29.7 7.0 16 281-296 51-66 (106)
361 PF05911 DUF869: Plant protein 68.7 31 0.00066 38.7 9.7 63 281-343 92-175 (769)
362 KOG0483 Transcription factor H 68.6 7 0.00015 36.8 4.2 41 290-330 107-147 (198)
363 KOG4797 Transcriptional regula 68.6 11 0.00023 32.8 4.9 26 282-307 68-93 (123)
364 PF10883 DUF2681: Protein of u 68.6 21 0.00046 29.5 6.5 21 288-308 30-50 (87)
365 PF09730 BicD: Microtubule-ass 68.5 19 0.0004 40.1 8.0 47 283-329 71-117 (717)
366 PF06785 UPF0242: Uncharacteri 68.4 47 0.001 34.1 10.1 69 261-329 76-154 (401)
367 PF11544 Spc42p: Spindle pole 68.3 46 0.001 27.0 8.2 46 284-329 8-53 (76)
368 COG1729 Uncharacterized protei 68.2 14 0.0003 36.3 6.3 50 282-332 57-106 (262)
369 PF10506 MCC-bdg_PDZ: PDZ doma 68.1 20 0.00043 28.3 6.0 35 285-319 2-36 (67)
370 COG1842 PspA Phage shock prote 68.0 1E+02 0.0022 29.5 12.0 25 300-324 118-142 (225)
371 PRK13923 putative spore coat p 67.9 18 0.0004 33.4 6.6 28 285-312 115-142 (170)
372 PRK03947 prefoldin subunit alp 67.8 25 0.00054 30.3 7.3 32 290-321 103-134 (140)
373 KOG1318 Helix loop helix trans 67.8 13 0.00029 38.6 6.4 34 280-313 289-322 (411)
374 PHA03161 hypothetical protein; 67.7 35 0.00076 31.0 8.2 41 267-309 42-82 (150)
375 TIGR03495 phage_LysB phage lys 67.6 81 0.0018 28.1 10.4 43 296-339 69-111 (135)
376 PRK14156 heat shock protein Gr 67.5 12 0.00026 34.6 5.4 55 289-343 35-89 (177)
377 PF04340 DUF484: Protein of un 67.5 18 0.00039 33.7 6.8 21 287-307 46-66 (225)
378 PRK10963 hypothetical protein; 67.5 16 0.00034 34.4 6.4 15 296-310 69-83 (223)
379 PRK04863 mukB cell division pr 67.4 46 0.001 40.0 11.4 38 286-323 360-397 (1486)
380 PF05911 DUF869: Plant protein 67.3 26 0.00057 39.2 8.9 62 276-337 129-219 (769)
381 PF06698 DUF1192: Protein of u 67.3 19 0.00041 27.8 5.6 24 283-306 23-46 (59)
382 PF07047 OPA3: Optic atrophy 3 67.1 12 0.00025 32.8 5.0 26 283-308 107-132 (134)
383 PHA03011 hypothetical protein; 67.1 33 0.00071 29.5 7.5 45 282-326 65-116 (120)
384 PF10458 Val_tRNA-synt_C: Valy 66.9 55 0.0012 25.0 8.2 23 306-328 43-65 (66)
385 PF03980 Nnf1: Nnf1 ; InterPr 66.8 46 0.00099 27.6 8.4 31 299-329 77-107 (109)
386 COG4985 ABC-type phosphate tra 66.7 10 0.00022 37.0 4.9 43 301-343 220-269 (289)
387 PRK10361 DNA recombination pro 66.7 73 0.0016 33.9 11.6 24 285-308 64-87 (475)
388 COG3879 Uncharacterized protei 66.6 25 0.00054 34.3 7.6 26 283-308 59-84 (247)
389 PHA03162 hypothetical protein; 66.6 8.5 0.00018 34.2 4.0 29 304-332 15-43 (135)
390 PF06428 Sec2p: GDP/GTP exchan 66.6 25 0.00054 29.7 6.7 37 305-341 40-81 (100)
391 PF03245 Phage_lysis: Bacterio 66.6 59 0.0013 28.2 9.3 48 280-327 13-60 (125)
392 PF07246 Phlebovirus_NSM: Phle 66.6 40 0.00087 33.2 9.0 13 314-326 214-226 (264)
393 KOG3433 Protein involved in me 66.6 63 0.0014 30.5 9.8 52 270-321 105-156 (203)
394 PF10779 XhlA: Haemolysin XhlA 66.5 43 0.00093 26.1 7.6 44 285-328 3-46 (71)
395 KOG0999 Microtubule-associated 66.4 52 0.0011 35.9 10.4 44 287-330 148-191 (772)
396 KOG4370 Ral-GTPase effector RL 66.4 21 0.00046 37.5 7.4 53 283-335 408-460 (514)
397 PF10234 Cluap1: Clusterin-ass 66.4 82 0.0018 31.1 11.2 79 251-329 138-238 (267)
398 PF10205 KLRAQ: Predicted coil 66.3 39 0.00084 28.9 7.8 42 285-326 30-71 (102)
399 TIGR01242 26Sp45 26S proteasom 66.2 13 0.00029 36.9 5.9 35 296-330 7-41 (364)
400 COG4238 Murein lipoprotein [Ce 66.2 40 0.00086 27.5 7.4 48 281-328 25-72 (78)
401 PF06818 Fez1: Fez1; InterPro 66.2 13 0.00029 35.1 5.5 31 298-328 76-106 (202)
402 COG4420 Predicted membrane pro 66.2 32 0.0007 32.4 7.9 37 296-332 135-171 (191)
403 PF08912 Rho_Binding: Rho Bind 66.0 28 0.0006 27.8 6.4 33 286-318 1-33 (69)
404 PF15290 Syntaphilin: Golgi-lo 66.0 12 0.00027 37.1 5.4 38 255-295 66-103 (305)
405 PF04012 PspA_IM30: PspA/IM30 65.9 31 0.00068 31.8 8.0 50 286-335 96-145 (221)
406 PRK13454 F0F1 ATP synthase sub 65.7 1.1E+02 0.0023 27.9 11.3 41 262-302 64-104 (181)
407 PF11853 DUF3373: Protein of u 65.6 4 8.7E-05 43.2 2.2 39 303-341 32-70 (489)
408 PF07412 Geminin: Geminin; In 65.5 28 0.00061 32.9 7.5 34 295-328 125-158 (200)
409 PRK06835 DNA replication prote 65.5 55 0.0012 32.8 10.0 21 308-328 64-84 (329)
410 KOG4010 Coiled-coil protein TP 65.4 20 0.00043 33.9 6.4 34 284-317 47-80 (208)
411 COG0576 GrpE Molecular chapero 65.3 18 0.00039 33.6 6.2 54 289-342 44-97 (193)
412 KOG0837 Transcriptional activa 65.3 36 0.00077 33.7 8.4 31 298-328 230-260 (279)
413 PF12329 TMF_DNA_bd: TATA elem 65.2 46 0.001 26.4 7.7 40 287-326 32-71 (74)
414 PRK13923 putative spore coat p 65.2 39 0.00084 31.3 8.2 27 289-315 112-138 (170)
415 PF07246 Phlebovirus_NSM: Phle 65.2 32 0.0007 33.9 8.1 22 307-328 214-235 (264)
416 KOG0239 Kinesin (KAR3 subfamil 65.2 40 0.00086 37.2 9.7 43 283-325 243-285 (670)
417 PF02994 Transposase_22: L1 tr 65.2 14 0.0003 37.6 5.8 56 284-339 140-195 (370)
418 PF15358 TSKS: Testis-specific 65.1 45 0.00098 35.1 9.4 39 274-312 153-191 (558)
419 KOG0946 ER-Golgi vesicle-tethe 65.1 18 0.00039 40.7 7.0 48 281-328 650-697 (970)
420 KOG0933 Structural maintenance 65.1 56 0.0012 37.8 10.8 37 293-329 820-856 (1174)
421 TIGR01730 RND_mfp RND family e 65.0 37 0.00081 32.0 8.5 30 298-327 105-134 (322)
422 TIGR03689 pup_AAA proteasome A 65.0 14 0.00029 39.5 6.0 46 293-338 6-52 (512)
423 cd00632 Prefoldin_beta Prefold 65.0 33 0.00071 28.4 7.1 38 291-328 66-103 (105)
424 PRK05431 seryl-tRNA synthetase 65.0 31 0.00066 35.7 8.4 36 293-328 71-106 (425)
425 PRK10636 putative ABC transpor 64.9 31 0.00068 37.2 8.8 24 281-304 563-586 (638)
426 PF14257 DUF4349: Domain of un 64.8 26 0.00056 33.3 7.4 57 281-337 132-197 (262)
427 KOG0964 Structural maintenance 64.8 57 0.0012 37.7 10.8 61 268-328 419-486 (1200)
428 COG4985 ABC-type phosphate tra 64.7 18 0.00039 35.3 6.2 9 88-96 72-80 (289)
429 PLN02678 seryl-tRNA synthetase 64.6 31 0.00068 36.2 8.4 12 332-343 99-110 (448)
430 PF10168 Nup88: Nuclear pore c 64.5 78 0.0017 35.2 11.8 20 285-304 583-602 (717)
431 PF06103 DUF948: Bacterial pro 64.5 46 0.001 26.6 7.7 59 280-340 25-83 (90)
432 COG4372 Uncharacterized protei 64.5 96 0.0021 32.6 11.6 46 277-322 133-178 (499)
433 KOG0978 E3 ubiquitin ligase in 64.4 48 0.001 36.8 10.0 62 272-333 564-625 (698)
434 TIGR03689 pup_AAA proteasome A 64.3 16 0.00036 38.8 6.4 41 283-323 3-43 (512)
435 KOG2507 Ubiquitin regulatory p 64.3 35 0.00076 36.0 8.5 34 296-329 244-277 (506)
436 PF15070 GOLGA2L5: Putative go 64.2 40 0.00087 36.8 9.4 50 279-328 13-62 (617)
437 TIGR02680 conserved hypothetic 64.0 21 0.00045 42.2 7.7 37 281-317 742-778 (1353)
438 KOG2185 Predicted RNA-processi 64.0 27 0.00058 36.6 7.6 66 267-332 399-474 (486)
439 TIGR01843 type_I_hlyD type I s 63.9 1.1E+02 0.0023 30.2 11.8 11 290-300 212-222 (423)
440 PF11382 DUF3186: Protein of u 63.8 21 0.00046 35.3 6.7 41 282-322 33-73 (308)
441 cd07429 Cby_like Chibby, a nuc 63.7 16 0.00034 31.5 5.0 22 288-309 79-100 (108)
442 PF10828 DUF2570: Protein of u 63.6 89 0.0019 26.3 9.8 38 285-322 36-73 (110)
443 TIGR01242 26Sp45 26S proteasom 63.6 16 0.00035 36.2 6.0 39 285-323 3-41 (364)
444 PF15619 Lebercilin: Ciliary p 63.6 1.1E+02 0.0024 28.6 11.0 86 254-341 54-148 (194)
445 PF04999 FtsL: Cell division p 63.6 24 0.00052 28.5 6.0 28 295-322 42-69 (97)
446 cd07666 BAR_SNX7 The Bin/Amphi 63.5 36 0.00078 33.0 8.0 51 276-329 158-208 (243)
447 PHA03155 hypothetical protein; 63.4 10 0.00022 32.9 3.9 29 304-332 10-38 (115)
448 PF01486 K-box: K-box region; 63.2 38 0.00083 27.7 7.2 35 271-305 61-99 (100)
449 PRK14161 heat shock protein Gr 63.1 33 0.00072 31.7 7.4 27 279-305 31-57 (178)
450 PRK06569 F0F1 ATP synthase sub 63.0 1.2E+02 0.0026 27.6 11.2 43 261-303 42-84 (155)
451 PRK09343 prefoldin subunit bet 63.0 40 0.00087 29.0 7.5 42 297-340 73-114 (121)
452 PRK14150 heat shock protein Gr 62.9 22 0.00048 33.2 6.3 41 301-341 58-98 (193)
453 KOG0161 Myosin class II heavy 62.9 63 0.0014 39.9 11.4 9 284-292 904-912 (1930)
454 cd00890 Prefoldin Prefoldin is 62.9 37 0.0008 28.2 7.2 32 285-316 91-122 (129)
455 PF15556 Zwint: ZW10 interacto 62.8 1.1E+02 0.0023 29.5 10.8 63 267-329 113-175 (252)
456 PRK10929 putative mechanosensi 62.8 62 0.0013 37.8 11.0 44 295-340 265-308 (1109)
457 PF12017 Tnp_P_element: Transp 62.7 20 0.00043 34.5 6.1 17 321-337 47-63 (236)
458 PF03961 DUF342: Protein of un 62.3 49 0.0011 34.2 9.3 61 269-329 329-402 (451)
459 KOG3335 Predicted coiled-coil 62.3 34 0.00074 31.9 7.3 31 297-327 108-138 (181)
460 PF02388 FemAB: FemAB family; 62.2 36 0.00077 34.8 8.2 44 281-324 242-295 (406)
461 cd00632 Prefoldin_beta Prefold 62.2 36 0.00077 28.2 6.9 37 284-320 66-102 (105)
462 PF15254 CCDC14: Coiled-coil d 62.0 59 0.0013 36.6 10.2 40 287-326 440-479 (861)
463 KOG0995 Centromere-associated 62.0 37 0.0008 36.8 8.4 53 277-329 297-359 (581)
464 PRK13182 racA polar chromosome 61.9 83 0.0018 29.0 9.8 87 255-343 39-150 (175)
465 PRK14148 heat shock protein Gr 61.7 28 0.0006 32.7 6.8 42 286-327 38-79 (195)
466 cd00890 Prefoldin Prefoldin is 61.7 30 0.00065 28.8 6.4 39 283-321 89-127 (129)
467 PF13863 DUF4200: Domain of un 61.6 95 0.0021 25.9 12.0 74 255-328 34-107 (126)
468 PF14775 NYD-SP28_assoc: Sperm 61.6 32 0.0007 26.3 6.0 37 291-328 23-59 (60)
469 PF09325 Vps5: Vps5 C terminal 61.5 67 0.0014 29.4 9.2 69 259-327 127-195 (236)
470 PF03961 DUF342: Protein of un 61.5 40 0.00086 34.8 8.5 72 257-328 337-408 (451)
471 PRK10361 DNA recombination pro 61.5 1.2E+02 0.0026 32.3 12.0 76 254-329 29-108 (475)
472 PF04899 MbeD_MobD: MbeD/MobD 61.4 54 0.0012 26.1 7.4 54 284-339 17-70 (70)
473 PF14931 IFT20: Intraflagellar 61.4 1.1E+02 0.0024 26.6 10.2 66 263-328 55-120 (120)
474 PF14389 Lzipper-MIP1: Leucine 61.4 68 0.0015 26.2 8.2 63 267-329 1-81 (88)
475 PHA02109 hypothetical protein 61.4 24 0.00052 33.2 6.1 39 279-317 191-229 (233)
476 PF05812 Herpes_BLRF2: Herpesv 61.3 13 0.00028 32.5 4.2 33 304-336 5-37 (118)
477 PF13942 Lipoprotein_20: YfhG 61.2 75 0.0016 29.7 9.2 65 258-324 102-166 (179)
478 COG1730 GIM5 Predicted prefold 61.2 35 0.00077 30.6 7.0 44 280-323 5-48 (145)
479 TIGR02338 gimC_beta prefoldin, 61.2 42 0.0009 28.1 7.1 43 279-321 65-107 (110)
480 PF09727 CortBP2: Cortactin-bi 61.2 80 0.0017 29.8 9.6 66 259-327 108-173 (192)
481 TIGR00414 serS seryl-tRNA synt 61.2 51 0.0011 34.0 9.2 74 260-333 37-114 (418)
482 PF00261 Tropomyosin: Tropomyo 60.9 58 0.0013 30.8 8.9 58 272-329 104-161 (237)
483 PRK09413 IS2 repressor TnpA; R 60.9 20 0.00043 30.4 5.2 32 295-326 71-102 (121)
484 PF03670 UPF0184: Uncharacteri 60.8 35 0.00076 28.2 6.3 44 281-324 33-76 (83)
485 PF12777 MT: Microtubule-bindi 60.8 33 0.00073 34.2 7.6 63 265-327 219-281 (344)
486 KOG4807 F-actin binding protei 60.8 76 0.0017 33.4 10.1 74 254-327 360-453 (593)
487 PF08286 Spc24: Spc24 subunit 60.6 2.8 6.1E-05 35.7 -0.0 44 290-333 1-44 (118)
488 PF14916 CCDC92: Coiled-coil d 60.4 23 0.00049 27.5 4.9 41 286-329 1-41 (60)
489 PF10359 Fmp27_WPPW: RNA pol I 60.3 39 0.00085 35.4 8.3 69 282-352 164-241 (475)
490 KOG0612 Rho-associated, coiled 60.3 83 0.0018 37.1 11.2 77 253-329 470-549 (1317)
491 KOG3584 cAMP response element 60.2 29 0.00064 34.8 6.8 54 270-323 287-340 (348)
492 PF10359 Fmp27_WPPW: RNA pol I 60.1 42 0.00091 35.2 8.5 73 280-352 169-250 (475)
493 PF06103 DUF948: Bacterial pro 59.9 87 0.0019 24.9 9.4 68 271-340 23-90 (90)
494 PF01920 Prefoldin_2: Prefoldi 59.9 31 0.00067 27.7 6.0 42 290-331 64-105 (106)
495 PF12128 DUF3584: Protein of u 59.8 82 0.0018 36.8 11.5 71 255-325 464-534 (1201)
496 PF00261 Tropomyosin: Tropomyo 59.7 1.6E+02 0.0034 27.8 11.9 70 259-328 147-216 (237)
497 PTZ00266 NIMA-related protein 59.7 95 0.002 36.1 11.7 74 256-329 441-516 (1021)
498 PRK14143 heat shock protein Gr 59.6 25 0.00054 34.0 6.2 44 284-327 63-106 (238)
499 TIGR02977 phageshock_pspA phag 59.4 1.2E+02 0.0026 28.4 10.6 71 255-328 69-139 (219)
500 PF07061 Swi5: Swi5; InterPro 59.4 85 0.0018 25.6 8.4 54 277-330 3-67 (83)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1e-63 Score=453.21 Aligned_cols=165 Identities=59% Similarity=1.037 Sum_probs=153.4
Q ss_pred CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 018643 1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP 78 (352)
Q Consensus 1 Mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~~mQAYy~~~~~pp~y~~s~va~-~~phPYmWg~q~~m~pPyGtp~P 78 (352)
||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p 78 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP 78 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence 9999999999999988864 5799999999999 599999999 889999999995 99999999999999999999999
Q ss_pred CcccCCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 018643 79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT 138 (352)
Q Consensus 79 Y~a~yp~GgvyaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~s 138 (352)
|+||||||||||||+||+ ++..+++++|+ ++|++++|||+++|||||+|| + ||++++|++
T Consensus 79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~ 158 (189)
T PF07777_consen 79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS 158 (189)
T ss_pred CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence 999999999999999996 23357889999 599999999999999999994 3 889999999
Q ss_pred cCCCCCCCcccccCCCCCCCCCCCcCccc
Q 018643 139 SGSGNDGVSQSAESGSDGSSDASDENGNQ 167 (352)
Q Consensus 139 ~gs~~~~~s~S~esgsegSsdgsd~ns~~ 167 (352)
++++|++.|||+|||+||||||||+|+++
T Consensus 159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~ 187 (189)
T PF07777_consen 159 GSSANDGSSQSSESGSEGSSDGSDGNTNN 187 (189)
T ss_pred cCCCCCccCccccccccccccCcCccccC
Confidence 99999999999999999999999999875
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.49 E-value=1.8e-13 Score=104.46 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
|.+.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999999874
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.41 E-value=1.5e-12 Score=99.66 Aligned_cols=61 Identities=54% Similarity=0.746 Sum_probs=56.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
.|+.||+++||+||++||.||++|+.+|+.++..|+.+|..|+.++..|..++..|+.++.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999888888888887764
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.30 E-value=2.5e-11 Score=114.58 Aligned_cols=81 Identities=35% Similarity=0.450 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
+|.|-+|||++||.+|+-+|.|||+++++|+.++..|.+||+.|+.+.+.|+...+.|..+|.+|..+|+.+. +.|.+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~ 143 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHh
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999887 55555
Q ss_pred hhh
Q 018643 337 LEQ 339 (352)
Q Consensus 337 L~~ 339 (352)
|.+
T Consensus 144 ~~~ 146 (292)
T KOG4005|consen 144 LKQ 146 (292)
T ss_pred hHH
Confidence 554
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.25 E-value=1.8e-11 Score=118.05 Aligned_cols=62 Identities=35% Similarity=0.421 Sum_probs=56.7
Q ss_pred cchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 250 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 250 ~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
..-..||.-+||+-|.++|||+||.||+|||+|+.+||.||..||.+|..|-+||..|++-|
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 34467899999999999999999999999999999999999999999999999999887654
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.20 E-value=5.5e-11 Score=122.20 Aligned_cols=71 Identities=39% Similarity=0.468 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..|.+-.||+.|+++|||+|..||+|||+|++.||.++..|.+||+.|+.|...|++++..|..||..|+-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999998873
No 7
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.12 E-value=3.9e-10 Score=83.72 Aligned_cols=50 Identities=50% Similarity=0.747 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++.||+ +||+||++||.||++++++|+.+|..|+.+|..|+.+|..|+.|
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777 99999999999999999999999999999999999999888764
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.12 E-value=9.4e-11 Score=119.09 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|+.+||.|||++|++||+.||+|||+|++.||.+|....+||++|++++..|+.++..|.++.+.|...+....
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999999999999999999999999999999998777777777766666666555443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.58 E-value=2.3e-07 Score=88.85 Aligned_cols=68 Identities=31% Similarity=0.477 Sum_probs=59.1
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 249 ~~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.+-.+.++..+|-+|.+++|||+|++||.||.+++.+||++|..|..+|..|-.++..|++...+++.
T Consensus 195 spid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 195 SPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33456778888888889999999999999999999999999999999999999999888776666554
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.40 E-value=4.3e-09 Score=86.11 Aligned_cols=68 Identities=32% Similarity=0.485 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.+..++|..||+.+||.+|+.||.||.+++++|+.++..|+.+...|..++..|..++..|+..+..|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567799999999999999999999999999999999888888888888877777666665555544
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.33 E-value=1.9e-06 Score=83.80 Aligned_cols=56 Identities=32% Similarity=0.480 Sum_probs=48.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..|.+++|+.+|-|+|+||+++.|.|..+++.|+.+|++||.++..|.+|+..|+.
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445778888999999999999999999999999999999999888777777664
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.03 E-value=1.9e-05 Score=76.29 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
...|+.+|-+++||||.+++...+++..||..|+.||+.|+.+|..|+.++..|+.-..
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456679999999999999999999999999999999999999777666666654433
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.63 E-value=0.00052 Score=60.14 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-.+|..||-++||=-|.-||-|+-..-++|| .++..|..+|+.|++++..|..|...|+.++.+|..
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE-------~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELE-------KEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667779999999999999987766665 556666677777777777778888888888888764
No 14
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.61 E-value=0.0003 Score=65.12 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=68.4
Q ss_pred chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCcccCCCCCcCCCCCCCC--CC--CC----
Q 018643 30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLM-PPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA---- 100 (352)
Q Consensus 30 dW~~~mQAYy~~~~~pp~y~~s~va~~~phPYmWg~q~~m~-pPyGtp~PY~a~yp~GgvyaHP~mp~--~~--~~---- 100 (352)
|=. ....|.- =...=.||.+. ++||||- ..|+ .| +||||+ ||. +||+||+ +| .+
T Consensus 22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~---s~va~sp--~phPYM----WG~--~q~mmPPYGtP~pY~A~Yp 84 (189)
T PF07777_consen 22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFN---SAVASSP--QPHPYM----WGP--QQPMMPPYGTPVPYPAMYP 84 (189)
T ss_pred CCC-CCccCCc-cHhhhhccCCC----CCCcccC---cccCCCC--CCCCcc----cCC--CccccCCCCCCCCCccccC
Confidence 444 3666643 22345688873 7789987 3343 34 789999 999 9999986 22 11
Q ss_pred -----CCCC---------------CCCCCCCCcccccccccccCCCCCCCCCCccccccCCCC-C-CCcccccCCCCCCC
Q 018643 101 -----APTN---------------TEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGN-D-GVSQSAESGSDGSS 158 (352)
Q Consensus 101 -----~~~~---------------~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~s~gs~~-~-~~s~S~esgsegSs 158 (352)
+..+ +++.+....+.|-.+ .|.+++ |+....|+++|... - ..-+.+++++....
T Consensus 85 hGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~ 160 (189)
T PF07777_consen 85 HGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGS 160 (189)
T ss_pred CCccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccC
Confidence 1111 122222222222111 133333 55555677777653 1 23356677777777
Q ss_pred CCCCcCcccccccc
Q 018643 159 DASDENGNQQEFAR 172 (352)
Q Consensus 159 dgsd~ns~~~~s~~ 172 (352)
.++|+.++..++++
T Consensus 161 s~n~~~Sqs~eSgs 174 (189)
T PF07777_consen 161 SANDGSSQSSESGS 174 (189)
T ss_pred CCCCccCccccccc
Confidence 77888887666665
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.36 E-value=0.00034 Score=74.15 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=57.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED-LSRLC 329 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~-L~~l~ 329 (352)
|-.||+=+||.||++||+||..-|..||..|+.|+.|-++|.+|-..+...+..++.+...|-.+ +..|+
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lr 560 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLR 560 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999998888888777777777777777544 33343
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.77 E-value=0.0067 Score=51.55 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+.+.+|+.++..|..+...|+.++..|-+|+..|+.||..|+++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999864
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.54 E-value=0.012 Score=50.36 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.+|++++..|..+...|+..+..|-+|+..|+.||..|+++|..+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999999999873
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.41 E-value=0.022 Score=45.26 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
++.|+.+|..+-..+..|+.++..|+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333333
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.41 E-value=0.01 Score=53.88 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
....|+.||..|+.++..|+++++.|+.||..|..++..+. ++-..|..+++
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~ 149 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD 149 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45667778888888888888888888888888888777776 56666665554
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.018 Score=45.87 Aligned_cols=56 Identities=29% Similarity=0.354 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+.-|+-+|+.|+.+|..|..++..++...+.|+.||.+|+.+-.... +.++.|+-.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLGk 75 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 44566777778888888888777777777777777777777655554 555555543
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.29 E-value=0.057 Score=50.69 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
++.+++++..+..|+++|..|+.++..++.+.+.|+.+|..|+..+.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777777777777777777777776544
No 22
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.18 E-value=0.029 Score=45.52 Aligned_cols=48 Identities=31% Similarity=0.419 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-++|.+++..|+.....|..+++.++++|+.|+.||.-|..-|..|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999999999999853
No 23
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.18 E-value=0.035 Score=43.47 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.|- ..+..|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence 3466677777777778888888887777777777777777777777765 44554443
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.08 E-value=0.031 Score=45.31 Aligned_cols=58 Identities=29% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.+.-|+.+|+.|+.+|..|..++..++.....|+.||..|+.+..... ++|+.|.-.+
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGkm 76 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 455566777777777777777777766666667777777777666655 6666655443
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.92 E-value=0.056 Score=42.98 Aligned_cols=47 Identities=36% Similarity=0.464 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-|+.+++.|+.+|..|..+...|+.++++|+.|-..+..+|..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555544
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.83 E-value=0.089 Score=50.78 Aligned_cols=89 Identities=25% Similarity=0.284 Sum_probs=64.3
Q ss_pred cchhhhHHHHHH-HHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 250 DQWIQDERELKR-QKRKQ-----SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 250 ~~~~~DEre~KR-~RRk~-----~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++...+|+-.|| .|-+. +.|.-||- ..=..++.+|.++-+.|+.||+.|+.+...|-.+..+|..+...|++
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm--~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARM--EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344456665554 44343 23333333 22234578999999999999999999999999999999999999999
Q ss_pred HHHHhcCcchhhchhhc
Q 018643 324 DLSRLCGPEAVANLEQS 340 (352)
Q Consensus 324 ~L~~l~g~~~~~~L~~~ 340 (352)
+|..+......-++-..
T Consensus 140 ~l~~~~~~~~~~~~v~e 156 (292)
T KOG4005|consen 140 ELAELKQQQQHNTRVIE 156 (292)
T ss_pred HHHhhHHHHHHhhHHHh
Confidence 99998776665555443
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.066 Score=42.73 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
=|-++++|..+-..|..|...++...+.|.++.++|+.|..-+.++|+.|-|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999998764
No 28
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.55 E-value=0.061 Score=56.18 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...++||++++.|+.|.+.|.++...++++++.|+.||.+|+.+++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999996543
No 29
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.55 E-value=0.036 Score=40.33 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666666654
No 30
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.44 E-value=0.19 Score=46.10 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=55.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.++....+..-+.-......++.+++.-++.|+.|...|.-++..|..++..|+.||..|-+++.+..+.+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~e 188 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQE 188 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444545556667788888889999999999999999999999999999999999988776543
No 31
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.33 E-value=0.082 Score=41.42 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|+.+|+.|-..+..|+.+...|+.+...+..|+..|.++...-.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887654
No 32
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.30 E-value=0.36 Score=39.68 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+.-++|..+++.+=|++=..|.-+.....+|+.+++.|......|-.+|.....+|..|+.-|.++..+|....
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577888888888888888888888889999999999999999999999999999999999999999998764
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.26 E-value=0.095 Score=40.94 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+++++||.++..++.-++.|-..|.....++..|+.+...|..+|..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999999999999999863
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.24 E-value=0.25 Score=46.39 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
-+++..+|+++++.++.+...|..++..|++++..++.|+..|+.++..+....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778888888889999999999999999999999999999999988887433
No 35
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.99 E-value=0.13 Score=41.83 Aligned_cols=51 Identities=33% Similarity=0.462 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|-++++|..+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999998888888888999999998888888888765
No 36
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.94 E-value=0.11 Score=44.61 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..+..|+.++-.|-++...|++.+..|-+|+..|+.||..|+++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999988
No 37
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.94 E-value=0.038 Score=50.48 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
|++||.++.+--++|.-|..|| .|.+.|+.++++||.+|.+|...-.|.+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~e 51 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQE 51 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888887 4456666666666666666654444433
No 38
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.87 E-value=0.0011 Score=67.33 Aligned_cols=68 Identities=32% Similarity=0.391 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 252 WIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 252 ~~~DEre~KR~RRk~~NRESARr---SR~RKq~~~eeLe~kv~~Le-~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
.+..+.+.||.+|+++|+.+|.+ ||.|++....+|+.+|+.|+ .++..|..+|..|+++.+.|+.+..
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~ 217 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELN 217 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHh
Confidence 35577778899999999999999 99999999999999999999 9999988888777777777665543
No 39
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.74 E-value=0.18 Score=48.43 Aligned_cols=50 Identities=34% Similarity=0.455 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..++++..+-+.|..++..|..+++.+++++..|+.||.+|.+.+..+.+
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 33455555555666666666666677777777888888888888887764
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.64 E-value=0.12 Score=37.51 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.||+..+.|+.....|+.+...|..+.+.|+.|...|+..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888888888888888889999999999988774
No 41
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.58 E-value=0.3 Score=43.18 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|..+-..|.++++.|..||.+++-++..+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777777777777777776665
No 42
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.51 E-value=0.26 Score=39.03 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.+||.++..++.-+..|-..|...+.++..|+.+...|..+|..+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36789999999999999999999999999999999999999999998875
No 43
>PRK00736 hypothetical protein; Provisional
Probab=94.48 E-value=0.28 Score=38.44 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-++.|-..|....+++..|+.+...|.++|..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998875
No 44
>PRK02119 hypothetical protein; Provisional
Probab=94.48 E-value=0.27 Score=39.09 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.+||.++..++.-+..|-..|...++++..|+.+...|..+|..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999999999999999999998875
No 45
>PRK04325 hypothetical protein; Provisional
Probab=94.47 E-value=0.28 Score=38.99 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-++.|-..|...+.++..|+.+...|..+|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998875
No 46
>PRK00295 hypothetical protein; Provisional
Probab=94.46 E-value=0.29 Score=38.36 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++||.++..++.-++.|-..|...++++..|+.+...|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999999999999999875
No 47
>PRK04406 hypothetical protein; Provisional
Probab=94.25 E-value=0.33 Score=38.81 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++.+||.++..++.-++.|-..|...++++..|+.+...|..+|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788889999998888999999999999999999999998988888775
No 48
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.18 E-value=0.68 Score=40.59 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=44.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|-...||..-....++...++.|+..++.|+.+++.+..++..++.+...|..++..+...+....
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666677777777777777777777777777666666666666666655555555443
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.16 E-value=0.81 Score=40.81 Aligned_cols=66 Identities=32% Similarity=0.329 Sum_probs=53.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.|++.+-+--+-++++|+.|+.++..+..+...|..+|..|+.+...|..+....+.++..|.
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888887888888888888888888888888888888888888888888888877777775
No 50
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.02 E-value=0.11 Score=50.59 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018643 289 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL 328 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~----~L~~EN~~Lk~~L~~l 328 (352)
.+..|++||++|+.|+..|+.+.+ .|+.||++|++.|.--
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455677788888887766644444 3899999999877654
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.88 E-value=0.35 Score=45.98 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+.+.++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344556666777777888888889999999999999999999999988864
No 52
>PRK11637 AmiB activator; Provisional
Probab=93.77 E-value=0.82 Score=46.61 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..-+.+++.|+.++..++.+...+..+|..++.++..|..+...|+.+|..+.
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666665555543
No 53
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.57 E-value=0.32 Score=41.42 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+|=.++..|++....|..++..|+..+..|..||.+|+-+...|+ +.|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 466778888888999999999999999999999999998888887 66666655
No 54
>PRK00846 hypothetical protein; Provisional
Probab=93.55 E-value=0.53 Score=38.08 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++++||.++...+.-.+.|-..|...+..+..|+.+...|.++|+.+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999998886
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.33 E-value=1.1 Score=42.27 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+.++++++.++..|+.+.+.++.++..+++++..++.++...+..|.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666655555555555555444
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.21 E-value=0.95 Score=44.37 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e-----------~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
.++.+|+.+...|+.+|+.|+-++..++++ ...|+.+|.++++.+..|+ ..|+.|+|-+|.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~--kyiReLEQaNDd 123 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLR--KYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccH
Confidence 344555555666666666666666666553 3467888888988888888 889999998876
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.20 E-value=0.48 Score=51.93 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|.+.+++.+|+.|...|+.++...++++..|+.|...|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888888777766654
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=0.64 Score=51.43 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.6
Q ss_pred hhhhcCCCCCCC
Q 018643 35 MQAFYGAGATPP 46 (352)
Q Consensus 35 mQAYy~~~~~pp 46 (352)
+|.|-=|.+.||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 355544444444
No 59
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.15 E-value=0.35 Score=46.64 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+||+|+..+..++..|+.|++.|+.+|..|-++++=|+
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555556666778888888888887664
No 60
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=93.01 E-value=0.64 Score=44.50 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 018643 288 ARVETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~---~L~~EN~~Lk~~L~~l 328 (352)
.....|.+||..|++|+..|+.+.. .|+.||.+|++.|.-.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4445556666666666666655555 7789999999877643
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=92.94 E-value=0.94 Score=34.43 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777888888888888888888877777653
No 62
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.84 E-value=1.1 Score=47.89 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++......+....-+.+++.|+..+...+.++..|+.+...|....+.|..|+..|+.++.++
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555555555555555555554444444443
No 63
>PRK11637 AmiB activator; Provisional
Probab=92.68 E-value=1.3 Score=45.22 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
...+..++.++..++.+...+..+|..|+.++..++.+...++..|
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554444444433
No 64
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.53 E-value=0.55 Score=45.24 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.+..|+..|+.+++.|+.+++.++.+..+|..++.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444433333
No 65
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.43 E-value=0.57 Score=45.52 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+-|..+|+--..-+.++.+|+.+.+.|+.++.+|+.++..|+.-+..
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444555556666666666666666666555554433
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.35 E-value=1.8 Score=41.82 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.+.-.+.+++.=.-++.++++|+.+|..++.+...++.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555544443
No 67
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.48 Score=50.97 Aligned_cols=46 Identities=35% Similarity=0.526 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++..|+.+|+.|+.||..|+.++.+|+.+++.|+++..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888777777777777776654
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=92.23 E-value=0.35 Score=37.26 Aligned_cols=24 Identities=42% Similarity=0.717 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
+.+|+.+++.|+.+|..|+.++..
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 69
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=92.17 E-value=0.55 Score=37.03 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.....+..++..++.+...|+.||.+|+.++..|..++.+..+-.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar 68 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 344455566666666666666667777777666666666555433
No 70
>PRK04406 hypothetical protein; Provisional
Probab=92.08 E-value=1.3 Score=35.36 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
++.|+.|+..|+.....+..-|+.|.+.+.....+...|+.+|..|. +.+..+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 60 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcc
Confidence 45799999999999999999999999999999999999999999996 66666654
No 71
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=92.05 E-value=0.6 Score=49.67 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
..-+.+.|-.||.| |+-...|...+....-++-...|..+|..|..||++|+.||..||.+|..|....
T Consensus 271 p~~~~d~kv~krqQ-----------RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 271 PNVGSDIKVLKRQQ-----------RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred CCCccCHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34567777776654 2222223334444444556677899999999999999999999999999987644
Q ss_pred h
Q 018643 333 A 333 (352)
Q Consensus 333 ~ 333 (352)
.
T Consensus 340 ~ 340 (655)
T KOG4343|consen 340 Q 340 (655)
T ss_pred c
Confidence 3
No 72
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=92.03 E-value=0.21 Score=46.16 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+|.+|++++++ +..++++++|+.+++.|+.+.++|+..+..|-
T Consensus 91 ~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677766663 55567777888877777775555555555544
No 73
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.93 E-value=2.7 Score=39.91 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+...-..+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777776666666666666666666555443333
No 74
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.92 E-value=2.1 Score=32.45 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..+..|+.++..|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555555555544
No 75
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.92 E-value=0.49 Score=49.58 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.+..+|.++.+.|+++.++|+.....|..+|..+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334555555566666666666666666666665443
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.77 E-value=1.4 Score=45.66 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=59.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+|++-.+++=+...+.....+++...|+.++..|+.++..|..+|......+..++..+..+...|..|..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555555666666666677778889999999999999999999999999999999999998888888887765
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.77 E-value=1.4 Score=42.66 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
-+.+|..+++.|+.|+..||-+|+.+..++++|....+.|-..|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888777777776664
No 78
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.75 E-value=0.78 Score=39.37 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
+|=.++..|+.....|..++..|+..+..|..||.+|+.+-..|+ +.|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 455677778888888888888888888888888888887777776 555555
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.59 E-value=1.3 Score=34.92 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~e-------l~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|.+++...+.+|..|+.+ |...-.++..|+.||..|+.+|..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554 4445555555555555555555443
No 80
>PRK02119 hypothetical protein; Provisional
Probab=91.59 E-value=1.6 Score=34.72 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++..|+.|+..|+.....+..-|+.|...+.....+...|+.+|..|. +.+..+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 567899999999999999999999999999999999999999999997 667666543
No 81
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=91.56 E-value=2.4 Score=39.92 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-+.||...++ ...++..|+.+-..|..++-.+...|..|+.|..+|+.+...+..
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554444 678888999999999999999999999999999999999887753
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=1.6 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 018643 307 LSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.+...|..|...|..+|..|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444443
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.45 E-value=0.72 Score=41.25 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 279 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el--~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-++++.+|+.++..|+.|...|...+ ..|..++..|+.|+..|..+|..|..
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777777664 67788888888888888888888875
No 84
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.40 E-value=1.2 Score=41.19 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018643 311 CEKLTSENNSIKEDLS 326 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~ 326 (352)
++.|+.++..|+.+|.
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344443333
No 85
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.34 E-value=0.62 Score=41.65 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.+|+.++..|+.++..|+.++..|
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.11 E-value=0.9 Score=38.35 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
.+.++++++++++++.|+++|..|+.++..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3445556667777777777777777777666653
No 87
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.06 E-value=3.8 Score=38.88 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..+|..+++.|+.|.+.|+..+..|+.....++.+..+|..++..+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555666666665555554
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.04 E-value=1.2 Score=39.57 Aligned_cols=44 Identities=32% Similarity=0.527 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 89
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.03 E-value=0.97 Score=38.50 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-.+|-.|+.-...|.+++..+++|+.+|+.||+-|-.-|+.|...
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 445666666667788888888889999999999999999888643
No 90
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=90.91 E-value=0.25 Score=38.06 Aligned_cols=42 Identities=31% Similarity=0.543 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
++|.+.|+.+|..|..++..|+.||..||.. ..++.+..|..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~----~~pe~l~q~~~ 54 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN----ASPEQLAQLQS 54 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSSSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHh
Confidence 3466778888888888888889999888764 45555555543
No 91
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=90.89 E-value=0.042 Score=55.92 Aligned_cols=65 Identities=29% Similarity=0.337 Sum_probs=48.1
Q ss_pred chhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 251 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 251 ~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
....|..+++ .|=.++||.+|-+||.||+..+..|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 277 ~~~~~p~~~~-~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 277 TVDEDPDERR-RRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred ccCCCchhhh-hhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 3334444333 4447899999999999999999999999999999999988 233355555555553
No 92
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.88 E-value=4.3 Score=37.86 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..+.+....++...+-+.-+.+-..-+.++..++.++..|+-+++.|..++..|..+...|..
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677777777777777666667777777777777777777777777777777776663
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.78 E-value=5.3 Score=34.98 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
-+..++.|+.+++.++.++..+..+...|+.++..+...+..+++++.++
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555454444444444444444
No 94
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.71 E-value=1.2 Score=37.51 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~L--r~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+..++.|+..++.+...| +..+..|+-++..|+-+...|.++|..+
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344466667777766666 6677777777777777777777776666
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.64 E-value=1.4 Score=38.30 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr---~el~~L~~e~~~L~~EN~~L 321 (352)
|+-.-..||+.....+.+.--.|=.+.-++|..++-.|..+|..++ .++..|+.++..|......+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666555555555555555666666666666665443 23444444444444444443
No 96
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=90.53 E-value=4.9 Score=37.74 Aligned_cols=76 Identities=29% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH--------HHH---HHHHHHHHHHHHHHHHHHHHHH----------------------
Q 018643 256 ERELKRQKRKQSNRESARRSRL--------RKQ---AECEELQARVETLSNENRNLRD---------------------- 302 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~--------RKq---~~~eeLe~kv~~Le~EN~~Lr~---------------------- 302 (352)
|.-++|.||-+..+.++=.-+- |=| .+|..|.+--..|+.+|.+|+.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrF 98 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRF 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHh
Confidence 4557788887777666532221 222 2344455556666777777765
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 303 -----------------ELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 303 -----------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+|..|....+.|..||.+||+-|--|...
T Consensus 99 Gryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDee 144 (195)
T PF10226_consen 99 GRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEE 144 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 46667777788889999999988877543
No 97
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.52 E-value=2.3 Score=33.69 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.+|+.|+..|+.....+..-|+.|.+.+.....+...|..+|..|. +.+.++....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4689999999999999999999999999999999999999999997 6777776543
No 98
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=90.50 E-value=1.3 Score=47.83 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++.+||.+.+.|+.|.+++..++++|++.+.+-..|..+|+.+|++-+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 4677788888888888888888888888888877778777777776654
No 99
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.38 E-value=4.4 Score=37.69 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=11.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVE 291 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~ 291 (352)
++.+..+-+..+...+.+...|+.++.
T Consensus 94 RL~kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 94 RLNKLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 100
>PF15294 Leu_zip: Leucine zipper
Probab=90.30 E-value=0.84 Score=44.94 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|..++..|+.||..|+.++..++.+|.....|...|..+|..++-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999874
No 101
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.24 E-value=2.7 Score=40.59 Aligned_cols=53 Identities=34% Similarity=0.463 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.....++..|..++..++.+...|..+|..|..+.+.|..+...|+.++.++.
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777777777777777777777777777765
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=90.23 E-value=1.2 Score=37.54 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
...+|+++++.++++|..|+.+...|+.+++.|+..-.-|.+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 3456666666666666666666666666666666533333333
No 103
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.22 E-value=1.6 Score=43.42 Aligned_cols=73 Identities=29% Similarity=0.319 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 256 ERELKRQKRKQSNRE-----SARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 256 Ere~KR~RRk~~NRE-----SARrSR~RK-q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|-|.|-.+=++.|.. ++-.+..-- +..|++|+..+.+|+.++.....+++.+++.+..|+.|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666632 333333222 4567777777777777777777778888888888888888888888765
No 104
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.21 E-value=2.3 Score=34.06 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+++.+||.++..-+.-.++|...|...+..++++....+.|.+++.++..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357888999998888888999999999999999999999999999998864
No 105
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=90.17 E-value=0.86 Score=42.91 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+.|..+|+.|+.|+..|+.++..|++ |..+...|.+-|..|.+
T Consensus 128 e~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 128 EKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 33444444444444444444443322 33333444455555543
No 106
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=90.13 E-value=0.31 Score=35.50 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.|..|..++..|..++..|..||..|++++
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 345555566666666666666666666554
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.13 E-value=2.8 Score=41.52 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+++.|..++..+..++..++.++..|+.++..|..+...+.+++.++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544444444444443
No 108
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.11 E-value=2.7 Score=43.83 Aligned_cols=48 Identities=35% Similarity=0.439 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++-|+.+++.|+.||..||..+..|+..|++|..+..++.++|..+.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 456667788888888888888888888888888888777777776664
No 109
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.02 E-value=1.2 Score=43.09 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|=+++..|||+++..+..++..|+.|++.|+..+.+|-...+-|..-
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455688999999999999999999999999999998887766543
No 110
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.98 E-value=1.9 Score=33.62 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
.|+.++..|+.....+...|+.|.........+...|+.+|..|. +.|.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 378889999999999999999999999999999999999999887 6677665
No 111
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.83 E-value=1.8 Score=35.82 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|+.|-...+.+|..|+.+|..|..+++.|+.++...+.|-..|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666666666655554
No 112
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=89.77 E-value=2.8 Score=38.05 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.++.++..|..++..|+.++..|.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 113
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=89.72 E-value=1.4 Score=37.93 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
+|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+ ++|.+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence 455788999999999999999999999999999999999999988 66665
No 114
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.61 E-value=34 Score=37.84 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=33.0
Q ss_pred hhHHHHHHHHH-HHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKR-KQSNRESARRSRLRKQAE---CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 254 ~DEre~KR~RR-k~~NRESARrSR~RKq~~---~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
--|.|+||.|. ++.-|..=+..|..=..+ -..|..++..|+.+|+.|+.++..|.+..+.=+.....|..+|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666664 344444444433330000 01233445555555555555555554444444433344433333
No 115
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.55 E-value=1.7 Score=37.33 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
.+.-.|..+-|+..=..+-++|+..+..|++++..+.+++..|+.++..++...
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555556666666666666666666655555555554433
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.52 E-value=5.7 Score=37.47 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
.+++.++..|+.+++.++.++..++.++..++..
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433333333
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.37 E-value=1.4 Score=43.20 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC 329 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~~L~~l~ 329 (352)
=.+.+..++++..+++.++.++.++..++..|+.++..|+ .++..|+.+++.++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666665555443 33444445554443
No 118
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=89.35 E-value=4.1 Score=37.27 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.+.++.+|+.+++.|+.||..|..++..++++|..|..
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555543
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.33 E-value=5.5 Score=34.46 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|..++..++..|..|..+|.-|..+|..+
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666666666666666544
No 120
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.28 E-value=4.6 Score=43.33 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+...+.+.+.|+.++..|......|..+...|..++..++.+|..|
T Consensus 179 eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 179 ELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444443333
No 121
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.24 E-value=3.9 Score=35.55 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 018643 316 SENNSIKEDLSRL 328 (352)
Q Consensus 316 ~EN~~Lk~~L~~l 328 (352)
.++.+|+..|.++
T Consensus 96 E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 96 EEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 122
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.10 E-value=3.9 Score=31.33 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++|...|..|..+...|..++..|+.+......|-.+-.++|-.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777777777777766666666665555555543
No 123
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.99 E-value=4.3 Score=37.75 Aligned_cols=50 Identities=22% Similarity=0.419 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
....+.+|+.++..|+.+...|..+.+....++..|+.+...|.++|...
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444455555555555555555443
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.99 E-value=7.8 Score=34.87 Aligned_cols=52 Identities=27% Similarity=0.403 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+.+++++.++..++.+..+...|++++..++.+++.++.+..++.+....
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444444444444444444433333
No 125
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.92 E-value=1.8 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
+++||.++..|+.....++.+++.|++.++.|..-.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555554444444444333
No 126
>PRK09039 hypothetical protein; Validated
Probab=88.52 E-value=4.8 Score=40.44 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|..|+++.+.|+.++..|+.++..++.+...++.+|..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 127
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.41 E-value=3.1 Score=32.77 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L 307 (352)
+.+++.+..++......+..|
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 128
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=88.38 E-value=6.1 Score=29.09 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.....|..++..|..++..|..++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444443
No 129
>PRK00846 hypothetical protein; Provisional
Probab=88.37 E-value=3.3 Score=33.50 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
+.|+.++..|+........-|+.|...+.....+...|+.+|..|. +.+.++..+..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~ 66 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA 66 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence 6789999999999999999999999999999999999999999998 778877755543
No 130
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.25 E-value=10 Score=31.37 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+....++..+..=..|...+..|++++..|..|...-.++.-.+.+....|..|+..|+..+.+-.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 3456667777777788999999999999999999999999999999999999999999988877654
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.25 E-value=1.7 Score=46.44 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.|..-+..+.++...+..|++|...++.++..|..+...|+.||.+|..+|..+..
T Consensus 135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33344445566667777778888888888888888888888888888888777764
No 132
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.22 E-value=1.7 Score=35.30 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.+..+...+..++..++.+..+|..||..|+-++..+..++.+..+-.
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~ 79 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 344566777778888888888889999999988888888777765544
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.22 E-value=3.1 Score=39.08 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 456666677777777777777777777777766666666665
No 134
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.08 E-value=1.3 Score=44.12 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+...|..+|..-.+++.....|..+|..+|.++.
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666666666666666666666664
No 135
>PRK04325 hypothetical protein; Provisional
Probab=88.05 E-value=2.8 Score=33.34 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
...|+.++..|+.....+..-|+.|...+.....+...|+.+|..|. +.+.++..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 46788999999999999999999999999999999999999999986 56666543
No 136
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.04 E-value=8.8 Score=38.17 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 304 LQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~ 324 (352)
...++.+...+..|...|..+
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 137
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.03 E-value=0.27 Score=41.46 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|...+..|..+|..|+.++..|+.++..++.+...|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 578899999999999999999999999999998888888888776443
No 138
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.85 E-value=1.9 Score=32.86 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..|+.+...|...+..++.+++.|+.+...|.+-+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444444433
No 139
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=87.82 E-value=1.8 Score=36.88 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|...+..|+.++..+..++..|+..+..+..+...|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.76 E-value=4.8 Score=42.25 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 265 KQSNRESARRSRLRKQAE----CEELQARVETLSNENRNLRDELQRL----SEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~----~eeLe~kv~~Le~EN~~Lr~el~~L----~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
.+.|-++++++-+||.+. +..++.++..++++|..|++....+ ++..+.+..++..+-++|.+|+ +.|+|
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQlrD 446 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQLRD 446 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 445667777777666543 4456666666777777766654433 3334444455556666677776 77888
Q ss_pred hhhcCCCC
Q 018643 337 LEQSNPTQ 344 (352)
Q Consensus 337 L~~~~~~~ 344 (352)
|.--+++|
T Consensus 447 lmf~le~q 454 (493)
T KOG0804|consen 447 LMFFLEAQ 454 (493)
T ss_pred Hheehhhh
Confidence 87777663
No 141
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=87.75 E-value=2.9 Score=34.57 Aligned_cols=37 Identities=38% Similarity=0.614 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 018643 293 LSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e------~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..+|..|+.+|..|+.+ ......||.+|++++..|+
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555432 2345556666666665553
No 142
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=87.70 E-value=5.6 Score=33.96 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 252 WIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE 303 (352)
Q Consensus 252 ~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~e 303 (352)
.+.+||+.+.++|..+||||-|. |+..+-.+..+-..|..+|.-+.++
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~q 94 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQ 94 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHH
Confidence 36789999999999999998765 3333333333333355555544433
No 143
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.54 E-value=2.4 Score=43.39 Aligned_cols=60 Identities=28% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|..-|+|-.+--...|..++.+.-|.+.||.+++++.+....|+.|+..|++-++.++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344445566666666667778888888999999999999999999999999999888886
No 144
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.50 E-value=8.6 Score=34.34 Aligned_cols=45 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
|+.+...|..++..|..++..|+.|+..|...|..+. ..|..|..
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~ 101 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3333333444444444445555555555555555554 45555554
No 145
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.40 E-value=3.2 Score=38.36 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+ .+.+..|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk 176 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56788888888888888888888888888888777776665554443 23344443
No 146
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.37 E-value=2.5 Score=32.43 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVA 335 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l-~g~~~~~ 335 (352)
..++.++..|+.+++.|+.||..|+.++..| ..++.+.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555555555555555555555 4444443
No 147
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.29 E-value=2.5 Score=41.48 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
=+.+++.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888888888888888888888888888887777654
No 148
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=87.24 E-value=4.1 Score=40.45 Aligned_cols=55 Identities=27% Similarity=0.324 Sum_probs=25.6
Q ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQ---SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 259 ~KR~RRk~---~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+||+.||. +=|+-.|+-++-=.-+|+.|+.+-+.|+....+|.+||..|++-+..
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 23333333333333445555555555555555555555555444433
No 149
>PRK00295 hypothetical protein; Provisional
Probab=87.14 E-value=3.9 Score=32.01 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
|+.++..|+.....+..-|+.|...+.....+...|+.+|..|. +.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 67889999999999999999999999999999999999999887 5666665
No 150
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.10 E-value=10 Score=37.33 Aligned_cols=49 Identities=14% Similarity=0.368 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++.++.++...+.+...++.++..++.++..|+.+-.+|...+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777777766666655444
No 151
>PRK14162 heat shock protein GrpE; Provisional
Probab=86.85 E-value=1.7 Score=40.60 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+++.|+.++..|+.++.+++.+++-++
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 152
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.80 E-value=10 Score=34.16 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|+-+.|...
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~ 149 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 44556667777777777888888888888888888888888888888777777665443
No 153
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=86.78 E-value=3.2 Score=33.84 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
++.|-.+|+..+.||..|+.+...|+.-+..|.
T Consensus 32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.62 E-value=6.5 Score=40.01 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|-+.+...||.-+..+++||..|.-+|+.+.++|.+.+.|+.+|..+|.+.
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 445666777778888999999999999999999998888888886666543
No 155
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.38 E-value=8 Score=35.10 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|..+|+.|+.+|..|...+..+..+...|......|+.++..++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455667777777777776666666666666666666666666554
No 156
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=86.32 E-value=8.9 Score=39.84 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQA 288 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~ 288 (352)
.+|||....|--||-|..=..+|.+|-.
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667767666666666654
No 157
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.32 E-value=5.2 Score=31.76 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.+.|..|..+-+.|....-.+...|..|+.++..+..+...|+.++..+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555543
No 158
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.29 E-value=2.3 Score=42.51 Aligned_cols=34 Identities=38% Similarity=0.713 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
++..|+++|..|+.++..++.+|..|..||..|+
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 159
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.25 E-value=5.3 Score=30.96 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..++...+..|-.+.++|......+..|..+...|+.++..++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456666666777777777777777777777777666653
No 160
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.23 E-value=8.1 Score=43.85 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.+++.|++.++.|..+...||+++..
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444443
No 161
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.17 E-value=10 Score=34.84 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.++..|+.+...+..-+..|+.|+..|..++..|.+++.+|
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444433
No 162
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.12 E-value=14 Score=33.25 Aligned_cols=45 Identities=22% Similarity=0.480 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++.+++.++.....+.+++..|.+++.+++.+-..++.++..+
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666
No 163
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.08 E-value=5.6 Score=36.18 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.++..+..+++.|++++++.+.|...|+.|++.+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888888888888888888887764
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.00 E-value=2.1 Score=41.39 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-.-=+..++.|+++|..|+.+++++.-+|+.|+++...|-.+..++..++.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345688999999999999999999999999999999999999888765543
No 165
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.96 E-value=2.8 Score=31.59 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++.++++|+.++..-++ .=.-.-...+.++..|+.||..|+++|..+
T Consensus 2 w~~Rl~ELe~klkaerE---~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 2 WLLRLEELERKLKAERE---ARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHhHH---hccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566555443221 111112333444455555666666555544
No 166
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.90 E-value=7.3 Score=44.67 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+..++..+++.|+.+.+.|+.++.+|++++..+
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555554444
No 167
>PRK14143 heat shock protein GrpE; Provisional
Probab=85.87 E-value=2.3 Score=40.93 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDE 303 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~e 303 (352)
+|..++.+|.++...+|++
T Consensus 85 elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 85 ELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 168
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.69 E-value=4.6 Score=30.94 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|..+...|..++..|..++..|+.+....+++...-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888887777777766543
No 169
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.69 E-value=7.9 Score=39.40 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++..+++.++.+-+|..|-.+-+| ++-+.|..-..+|+.+++.|+++...|......|+.+.++
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slk---------Rt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLK---------RTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444555555555555444443 3333333333444444444444444444444444444433
No 170
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.64 E-value=7.3 Score=36.01 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRL---------------SEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L---------------~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..+.+|+.++..|+.+...|+.+++.+ +.++..|+.+|.+|+.+|+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555444444443 34444555555555555543
No 171
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.60 E-value=11 Score=37.00 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEE---------LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~ee---------Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-.++.+.+++....-+.+. ..|++.+.. +...+.....+|..+..++...++++++|+.+...|++++.
T Consensus 140 ldel~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~ 217 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVE 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666555544443 333333332 33455666679999999999999999999999999999998
Q ss_pred HhcC
Q 018643 327 RLCG 330 (352)
Q Consensus 327 ~l~g 330 (352)
.|..
T Consensus 218 ~L~~ 221 (258)
T PF15397_consen 218 QLQA 221 (258)
T ss_pred HHHH
Confidence 8864
No 172
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.59 E-value=16 Score=34.47 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
+-|++|.+ .+...+-..|.-..-+++...|+..+..-+..-...-.+-..++.+...|..|...+..+|.+|. ..|.
T Consensus 102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~ 178 (192)
T PF11180_consen 102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR 178 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33344443 45555555555666667777777777766666666555556666666777777777777777766 5555
Q ss_pred chhhcC
Q 018643 336 NLEQSN 341 (352)
Q Consensus 336 ~L~~~~ 341 (352)
.|....
T Consensus 179 ~Lq~q~ 184 (192)
T PF11180_consen 179 QLQRQA 184 (192)
T ss_pred HHHHHh
Confidence 555543
No 173
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.53 E-value=8.9 Score=29.73 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.-...++.++...+..|..|..+|..|+.+++.|+.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556778888888888888888888888877765
No 174
>PRK14155 heat shock protein GrpE; Provisional
Probab=85.47 E-value=1.7 Score=41.12 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLR 301 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr 301 (352)
|+.++..+.++.+.+|
T Consensus 32 lkd~~lR~~AefeN~R 47 (208)
T PRK14155 32 LKDQALRYAAEAENTK 47 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 175
>smart00340 HALZ homeobox associated leucin zipper.
Probab=85.33 E-value=1.7 Score=31.55 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 305 QRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+.|++-|+.|..||.+|..++.+|+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788888888888888877764
No 176
>PRK14158 heat shock protein GrpE; Provisional
Probab=85.30 E-value=2.6 Score=39.50 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
++++|..++..+.++...+|.+.
T Consensus 55 e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 55 EAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 177
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.09 E-value=2.8 Score=42.43 Aligned_cols=60 Identities=32% Similarity=0.388 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCCC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 343 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~~ 343 (352)
..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 64 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence 44555555666666666666666666667777777777777776654 3445555544433
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.08 E-value=3.5 Score=42.16 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCC
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 342 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~ 342 (352)
++..|..++..|+.++..++.|...|+++|.+|.. +-.+.++...++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMID 77 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEc
Confidence 33334444444444444455555555555665554 344555554443
No 179
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.97 E-value=8.3 Score=38.62 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.++-+|+.++..+-.||+.|...|...+.--..|..|+..|+++-..
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777777777777777766544
No 180
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.93 E-value=4.1 Score=37.68 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+.+.|...|.-|+.+++.....++.|..++..|...+
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333333
No 181
>PRK10698 phage shock protein PspA; Provisional
Probab=84.70 E-value=12 Score=35.47 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=47.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 272 ARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 272 ARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
||..=.||+. .+..|+.+++..+.....|+..+..|+.++..++..-..|..+...-.....+......+
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~ 159 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSG 159 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444444443 345566777777778888888888888888888888888888777665554444444433
No 182
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=84.67 E-value=1.7 Score=44.00 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|+.||..|++|++.|+.+.++|
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 183
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=84.59 E-value=6.8 Score=34.42 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
+..||+.+|..|+.|+..+..-...|...+..|+-.+.+.++++..+.....+.
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 345777899999999999988889999999999999999999988876655544
No 184
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=84.54 E-value=2.8 Score=41.07 Aligned_cols=48 Identities=31% Similarity=0.282 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+-.+..+|+.+.+.|+.++.+|. .+..+.+.|+.||.+|++.|.--..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 33444555555555555554333 3445568899999999988866543
No 185
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=84.49 E-value=9.5 Score=34.63 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+-.+..+++++.|..|+-+-+.|-.++.+|..++...+.....|...|..|...+..
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667889999999999999999999999888777777777777666555443
No 186
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=84.43 E-value=3.5 Score=34.71 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+|+.+++..+.|-.-||..|..|..++..|+.|...++.+...+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678888888888888888888887777777777777777765444
No 187
>PRK00736 hypothetical protein; Provisional
Probab=84.40 E-value=5 Score=31.40 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.++.++..|+.....+..-|+.|...+.....+...|+.+|..|. +.+.++..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 367888888888888888888888888888888888888888886 55665543
No 188
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.32 E-value=7.7 Score=40.40 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el 304 (352)
+.++|..+..|+.||..|..+.
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554444443
No 189
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.25 E-value=8.3 Score=41.41 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=36.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|+.+...++.+|
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445555554222234556666677777666666666666666666666666666666543
No 190
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=84.18 E-value=4.2 Score=41.17 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..+++++.++..-..||..+.+++++++.-|..|.....+||+.|..-
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999988764
No 191
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.14 E-value=3.5 Score=43.45 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++++.|+.+++.|..+...|.++|+.|+.++..|+.+...++.++...
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 3446666777777777778888888888888888888777777665544
No 192
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=84.10 E-value=3.5 Score=34.15 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 287 QARVETLSNEN-RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN-~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|..|..-- .....+|..|+.++..|..||.+|+.+|...
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554211 1134455555555555555555555555443
No 193
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=84.09 E-value=20 Score=31.60 Aligned_cols=46 Identities=33% Similarity=0.403 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 283 CEELQARVETLSNENRNL--------RDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~L--------r~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..+..++..|+..+..| +.++..|---+..|...+..++.+|+.|
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 444444444444444444 4444555555555566777777777776
No 194
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.06 E-value=8.2 Score=36.86 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.+.++...|+.+++....+++.+..+...|+.+.+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 195
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.05 E-value=2.2 Score=36.82 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+|.+.|+.+|..|.+++..|+.||.-||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666777777776653
No 196
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=83.87 E-value=5.4 Score=39.32 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
=|.|+-+++ =+.+|+.|..+|..|+..|+.||++|...++.++.|+
T Consensus 67 y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 67 YNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345554432 3456677777777777777777777776666666665
No 197
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.79 E-value=15 Score=32.73 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 264 RKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe-------~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++..-+.+.+.-.+|++.++.|+ .++..|+.+...+..++..++.++..+ +..++.+|..+
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 445555666666666666666654 255555556555555555555444433 23344444444
No 198
>PRK14148 heat shock protein GrpE; Provisional
Probab=83.74 E-value=3.3 Score=38.79 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
.|+.+++.|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+..+|
T Consensus 44 ~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~D 101 (195)
T PRK14148 44 RAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVID 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3333334444444444444444444443333333333333333333333444443333
No 199
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.68 E-value=5.9 Score=42.60 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++|+..|+.+-..++.....|..++....+||+.|+.+|..|+.+|...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777777777777777777777778888888888887776653
No 200
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.64 E-value=5.8 Score=32.70 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..++..|+.++..|+.+...+.++|..+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 201
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=83.64 E-value=13 Score=35.64 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+-..++++++-|+.-|++||++|+.+-.+
T Consensus 229 eEkk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 229 EEKKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 33456677778888888888888776544
No 202
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.47 E-value=11 Score=42.45 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++-..=+--+.+-+..++.|.+.+..|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333344555666677888899999999999999999999999999999999999999998544
No 203
>PRK14160 heat shock protein GrpE; Provisional
Probab=83.43 E-value=4 Score=38.77 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
++.|+.++..|+.+...|+.++.++..+++-++....+=++++.......-+.+|+..+|.
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4445555555555555555555555555555555555555555556556667777766665
No 204
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.39 E-value=15 Score=36.57 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|..++..+..++...+.++..++.+...|......+.+++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444333
No 205
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.36 E-value=25 Score=30.23 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...+...
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 206
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=83.35 E-value=5.9 Score=31.70 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
+.+..+..|+.||=.|+-+|-.|.+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344555555555555555544444433
No 207
>PF15556 Zwint: ZW10 interactor
Probab=83.29 E-value=22 Score=34.06 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..++|.+.++-.+....++..|.+....++..-..-+.+|+.|..++..|+.+--.-+++|.
T Consensus 118 ~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQ 179 (252)
T PF15556_consen 118 MEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQ 179 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665566556666666666666665555566666666666666555444444443
No 208
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.10 E-value=15 Score=30.97 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 279 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~L--e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++..||.+++.| ..+...|+-++..++.++..|..+.+.+...+.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777 67777777777777777777777777666555544
No 209
>PRK09039 hypothetical protein; Validated
Probab=83.09 E-value=4.6 Score=40.57 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..++.+..+.+.++..|+.+++.|+.++..|.+.|...
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444333
No 210
>PRK14140 heat shock protein GrpE; Provisional
Probab=83.09 E-value=2.8 Score=39.14 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+++|+.++..|+.++..|+.++.++..+++-++....+=++.+.+.....-+.+|+..
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpv 96 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPA 96 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333333333333333333333
No 211
>PF15058 Speriolin_N: Speriolin N terminus
Probab=82.98 E-value=3.1 Score=39.17 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|.|.+++++|-.||++|++++..| .||.+||.-|.+-+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea~ 45 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEAC 45 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHhh
Confidence 4678889999999999999988654 45555555544443
No 212
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=82.67 E-value=8.4 Score=41.38 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~E-------N~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+.-...+++..+|...+-+++.+++++++|+.|+.. ..+..++++.|+.+.+..+.....|+.+
T Consensus 171 ~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 171 KSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456677788888888888999999999988874 2344555555555555444444443333
No 213
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=6.2 Score=40.13 Aligned_cols=55 Identities=29% Similarity=0.357 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|.|.+++++.|....+.|++.-++|+.-...|+.+.+.|+.|...|...|.-|..
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455666666666666666666666666666677777777777777666666554
No 214
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.56 E-value=5.6 Score=43.04 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+++|+.+++.++.+...|..++..+..+++.++.++.+|.+++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555444443
No 215
>PRK14127 cell division protein GpsB; Provisional
Probab=82.49 E-value=3.3 Score=35.57 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+.++++...++.|..||..|+.++..|+.++..+..+...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666666666666666666665555555554443
No 216
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.47 E-value=11 Score=35.40 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
++.+..|+.++..++.....|+.+|..|+.++..++..-..|..+.........+.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~ 153 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVR 153 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888888888888888888888888777777776554433333
No 217
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.40 E-value=6.2 Score=37.07 Aligned_cols=49 Identities=29% Similarity=0.486 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++++|..-+..|+.+|..|..+...+.++...|..+...|.++..++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3556666666666666666666665555555555554444444444433
No 218
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.36 E-value=16 Score=30.09 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 310 ECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~ 327 (352)
+...|..+...|..++..
T Consensus 75 e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 75 EVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.13 E-value=23 Score=33.01 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRN---LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~---Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++++|+.++...+..... ++.++..+..++..|+-|+..|..++..+
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333332 33344444445555555555555544444
No 220
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=82.03 E-value=5.8 Score=34.99 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+....+-+..|+.||.-|+..+-.+++.++.=+.....|+++|..+
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4445667888999999999999999999999999999999999865
No 221
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=81.97 E-value=23 Score=30.29 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
....|..++..++.+++.|..+|..|++++.+|..+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444445555555555566666666666666666554
No 222
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.97 E-value=12 Score=39.19 Aligned_cols=55 Identities=25% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.|+..++..+-++...|+.||.+ .++..|..+...|+.....|+..+.+|.+.+
T Consensus 280 e~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566666666666666666644 4556688888888888888888888887655
No 223
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.72 E-value=11 Score=42.80 Aligned_cols=47 Identities=34% Similarity=0.491 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEEC---------------EKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~---------------~~L~~EN~~Lk~~L~~l~g 330 (352)
+.|+.+|+.|++.+.+|.-.|+.|+.|. .+|+.+|.+||+-|.+|+.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555556665543 4677888999988888763
No 224
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.30 E-value=19 Score=37.77 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|.+-+..+.++..+|+.++..|..++..|+.+...|+.+|..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555566677777777777777778888888888888777765
No 225
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.27 E-value=23 Score=33.98 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+.+..|+....+++.+....++.+..|..|-..|+.++..+.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444444444444444444443
No 226
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=81.26 E-value=5.8 Score=33.79 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|...+..|..++..+..+++.|+.++..+.++++.+.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666654
No 227
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=81.14 E-value=4.2 Score=42.72 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.|+.....-..+...|+++.+.|+.+|..|-++|++|+
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5667777777777889999999999999999999999986
No 228
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.01 E-value=20 Score=33.10 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 270 ESARRSRLRKQA---ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 270 ESARrSR~RKq~---~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
..||..=.||+. .++.|+..+..+......|+..|..|+.++..|+.+-..|+.+.........+..
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 3445556666666666666666666666666666666666666555444444433
No 229
>PRK14153 heat shock protein GrpE; Provisional
Probab=80.94 E-value=3.4 Score=38.68 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+++++|+.++..+.++.+.++.+..
T Consensus 47 ~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 47 EEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 230
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=80.92 E-value=0.5 Score=45.23 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
+.-+..+||.+.++..|+.-...|..++++|++++++|..||.+|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888888888888888888888888
No 231
>PRK14161 heat shock protein GrpE; Provisional
Probab=80.87 E-value=4.5 Score=37.34 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
+++.|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+...|
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~D 80 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSD 80 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 333333333333333333333333333333333333333333334444444333
No 232
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=80.77 E-value=17 Score=37.95 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.+.+..++..+|.+...|+.++..|.+++-.++.
T Consensus 42 ~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 42 ESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544443
No 233
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.60 E-value=11 Score=42.47 Aligned_cols=76 Identities=24% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
-+++.-++++.+-.....+..+|..+|+.+..+-..+..+.+.+...++.|+.|...|..+++.|... +.++.+..
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~qs~ 524 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLAQSH 524 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHH
Confidence 45566777777777777777777777777777777766677777777777777777777777777633 44444433
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.60 E-value=32 Score=33.18 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 444444555555555555555555555555555555444
No 235
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=80.23 E-value=8.7 Score=35.21 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.6
Q ss_pred HHHHHHhcC
Q 018643 322 KEDLSRLCG 330 (352)
Q Consensus 322 k~~L~~l~g 330 (352)
..+|.+|..
T Consensus 108 ~~Kl~dmrn 116 (162)
T PF04201_consen 108 SRKLGDMRN 116 (162)
T ss_pred HHHHHHHhc
Confidence 333444443
No 236
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.08 E-value=26 Score=36.17 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++..|++++..|+.+...|.+++
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 74 EVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 237
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=8.4 Score=33.65 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.-+++|+.+++.|+-+...|.++-..|+++++.|+
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544444444444444443333333
No 238
>PRK14145 heat shock protein GrpE; Provisional
Probab=80.02 E-value=5.8 Score=37.27 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
|+.++..|+.+...|+.++-++..+++-++....+=++++.+.....-+.+|+..+
T Consensus 50 l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~ 105 (196)
T PRK14145 50 LKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVM 105 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333334344444444444333333333333333333333333344444333
No 239
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.89 E-value=14 Score=41.02 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+.|.+|...+++++..++...++|...+..|+.++..|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56778888888999999999999999999999999999888
No 240
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=79.85 E-value=2.9 Score=34.80 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
|+.+++.|..+++.++.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666665544
No 241
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.58 E-value=19 Score=31.63 Aligned_cols=53 Identities=9% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.=.++++.|..+++...+-....++++..++.....+..+...+..-+..|.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33346667777777777777777777777777777777766666666666665
No 242
>PF14282 FlxA: FlxA-like protein
Probab=79.37 E-value=8.4 Score=32.44 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..|..++..|.. -......++..|+.++..|..+...|..+......
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544 12344556666666666666666666666655543
No 243
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=79.35 E-value=12 Score=42.32 Aligned_cols=72 Identities=31% Similarity=0.420 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 269 RESARRSRLRKQA--ECEELQARVET-----------------LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 269 RESARrSR~RKq~--~~eeLe~kv~~-----------------Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.||+.+.+++- ++++|+.+++. -+.|+..|...++.+.+++..|.++...|..+|..|+
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777776653 34444444431 1367777888899999999999999999999999999
Q ss_pred Ccchhhchhhc
Q 018643 330 GPEAVANLEQS 340 (352)
Q Consensus 330 g~~~~~~L~~~ 340 (352)
+.+.+++|.+.
T Consensus 809 ~g~~~a~lr~~ 819 (984)
T COG4717 809 GGGTVAELRQR 819 (984)
T ss_pred cCChHHHHHHH
Confidence 99999998864
No 244
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=79.28 E-value=4.4 Score=43.84 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|-.+|+.|..|+..||.++...++-..+|+..+.+|.++|+++..
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888777777777777777777653
No 245
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.12 E-value=13 Score=40.94 Aligned_cols=65 Identities=31% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 018643 266 QSNRESARRSRLRKQAE-----CEELQARVETLSNENRNLRDEL----------------------------QRLSEECE 312 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~-----~eeLe~kv~~Le~EN~~Lr~el----------------------------~~L~~e~~ 312 (352)
+-+|...--.+.|+... +++..+++..|+.||..|+.++ ...++..+
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 018643 313 KLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 313 ~L~~EN~~Lk~~L~~l~g 330 (352)
.|.+||.+|++.|.++.+
T Consensus 563 ~LqaE~~~lk~~l~~le~ 580 (716)
T KOG4593|consen 563 ELQAELERLKERLTALEG 580 (716)
T ss_pred HHHHHHHHHHHHHHHHhc
No 246
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.98 E-value=10 Score=33.57 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT---SENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~---~EN~~Lk~~L~~l~ 329 (352)
.++-.+|..|..++..|+.+...|..+|..++....... ..+..|..+|..|.
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHH
Confidence 445555666666666666666666666555554443332 23334444444443
No 247
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.92 E-value=2.6 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++.|..++..|+.+|..|..|...|
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 248
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.65 E-value=7.3 Score=30.59 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
....++..++.+++.|+.||..|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566777777777777777777776654
No 249
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=78.63 E-value=6.5 Score=34.76 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.+...|.-++.|+.|...=..+|..|++++..+...|..|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555666666666666666666666666666666554
No 250
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=78.61 E-value=4.6 Score=35.34 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
-.|..|+.++||.++ ++++++|+.+++.|+.+++.+.
T Consensus 96 ~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555544433 2455556666655555555443
No 251
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=78.60 E-value=36 Score=30.00 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.2
Q ss_pred hhchhh
Q 018643 334 VANLEQ 339 (352)
Q Consensus 334 ~~~L~~ 339 (352)
|..|..
T Consensus 107 Lk~LG~ 112 (136)
T PF04871_consen 107 LKELGE 112 (136)
T ss_pred HHHcCC
Confidence 333333
No 252
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=78.55 E-value=18 Score=35.41 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECE-ELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~e-eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|++.|-.-|+.-.+.--=+|.+|-|...- +|+...+.-..--.+|+.++++|+++..+..
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~ 71 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEAN 71 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 44444444555555555555555554443 4444444333333444444444444444333
No 253
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.30 E-value=19 Score=38.14 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+-.+|.++.++|..|..+|+..|.+|.
T Consensus 110 ~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 110 ETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666654
No 254
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.30 E-value=13 Score=41.13 Aligned_cols=8 Identities=38% Similarity=0.995 Sum_probs=5.1
Q ss_pred CCcccCCCC
Q 018643 78 PYQAIYPPG 86 (352)
Q Consensus 78 PY~a~yp~G 86 (352)
|+. |||+.
T Consensus 272 pl~-~~p~~ 279 (717)
T PF10168_consen 272 PLP-MQPPA 279 (717)
T ss_pred cee-cCCCC
Confidence 664 77763
No 255
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=78.14 E-value=4.4 Score=31.39 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++..|++.+..|++|...+ |..|-.|++.|+.+|..|.-+|.
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceeee
Confidence 34566677777777766542 33344444555555555544443
No 256
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=78.12 E-value=6.8 Score=29.55 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
.-.....++..|+.||..|+.+|..++.
T Consensus 23 d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 23 DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455678889999999999999987764
No 257
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=78.03 E-value=9.1 Score=39.22 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.+++.|+.++..|..++..++++...|+.|+..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555666666666666666666666677777776654
No 258
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.98 E-value=13 Score=33.72 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~E 317 (352)
|.+.|+.+++..+.+.+.|+.+
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 259
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.98 E-value=19 Score=42.24 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 018643 273 RRSRLRKQAECEEL 286 (352)
Q Consensus 273 RrSR~RKq~~~eeL 286 (352)
+..+.+++..+.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 260
>PRK14157 heat shock protein GrpE; Provisional
Probab=77.94 E-value=6.1 Score=37.95 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARV 290 (352)
Q Consensus 277 ~RKq~~~eeLe~kv 290 (352)
+|-+++.+-+++|.
T Consensus 101 lR~~AEfeNyRKR~ 114 (227)
T PRK14157 101 QRERAEFINYRNRT 114 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 261
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.94 E-value=32 Score=33.14 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+-+..+..|+.++..|+..|..|..+|..|+
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3444455666666666666666555554443
No 262
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=77.69 E-value=36 Score=33.64 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.++.+..+..+++..++..+..++....+|..+-.+|
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444443333333
No 263
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=77.63 E-value=4 Score=35.63 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
|..-+|+|+.++..|+-||..|+++|..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44568999999999999999999987543
No 264
>PRK14144 heat shock protein GrpE; Provisional
Probab=77.61 E-value=6.9 Score=36.88 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRN 299 (352)
Q Consensus 285 eLe~kv~~Le~EN~~ 299 (352)
+|..++..+.++...
T Consensus 63 elkdk~lR~~AefeN 77 (199)
T PRK14144 63 ENWEKSVRALAELEN 77 (199)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 265
>PF14645 Chibby: Chibby family
Probab=77.52 E-value=9 Score=33.05 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|.++...|++||.-|+-+++.|-.-+.....|..-+..+|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556667777777777777777655555555555554443
No 266
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=77.33 E-value=25 Score=30.86 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el-~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.+...+..|+.+++.....+ ..+.++..........+..+|..|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555554444444 233333334444444444444443
No 267
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.29 E-value=21 Score=41.03 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 018643 253 IQDERELKRQKRKQSNRESARRSRLRKQ------------AECEELQARVETLSNENRNLRDELQRLSE----------E 310 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRESARrSR~RKq------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~----------e 310 (352)
+......=-.|-..-+|..|+...++.| ..|++|++.+-.|+.||..|..+|..|+. .
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~ 569 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQN 569 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018643 311 CEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~l 328 (352)
+..+..++..|+.-|.+|
T Consensus 570 ~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 570 NNDLELIHNELKKYIDAL 587 (1195)
T ss_pred hhHHHHHHHHHHHHHHHH
No 268
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.28 E-value=21 Score=35.98 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..|..-+...+.+|..|..++..|++++..+.-++.-|++++.+++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 44556667777777777777777777777777777777777777653
No 269
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=77.18 E-value=12 Score=34.53 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|..+++.....|..|..+|..|..+...|+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555543
No 270
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.09 E-value=9.8 Score=31.25 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSN-----ENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~-----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.++..||.+++.--. ....|..++..|+.+...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555443322 4445777788888888888888888888764
No 271
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=77.08 E-value=19 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+++.|..-...||.+|..+.+-...|..++..+..
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555555444444445444444443
No 272
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.99 E-value=26 Score=36.78 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+..|.+-...+..++..|..++..|..+...|+++|.+|+ ..+..|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ--NELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 4556666677777888888888888888888888888886 4455444
No 273
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.71 E-value=6.1 Score=28.79 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.|+-|.+=.+.|..||..|+.++..|+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665553
No 274
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=76.70 E-value=17 Score=29.91 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..|...+..|..-...|.++...|..++..|...|++.+.++++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555544455555555555555667777777777776654
No 275
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=76.41 E-value=16 Score=33.84 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
.-=.+|++++++.+.+.+.++.+..+|+.+|...++
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333446666666666666666666666666655443
No 276
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=76.38 E-value=15 Score=31.06 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
...||.|+.-+==++.+.|.|+.=-+.|+.|...-+++|+.|++++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666665555555555555444445555555555555555443
No 277
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=76.29 E-value=22 Score=36.71 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|+.++..|++++..|+.+...|.+++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 278
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=76.19 E-value=11 Score=41.10 Aligned_cols=51 Identities=31% Similarity=0.373 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 282 ECEELQARVETLSNENRNLRDELQR----------------------------LSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~----------------------------L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++.+|+..+..|+.++..|..+|.. -+..++.|+.||..|+++|..|....
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4555555555666666655555443 23567788899999999998886543
No 279
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.00 E-value=19 Score=30.76 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 307 LSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+|++.|.-.|.+|..++..
T Consensus 45 ~eqE~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 45 LEQENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 280
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.98 E-value=27 Score=32.86 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..++..|+.|...++.+|..|+.++..|..
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 281
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=75.85 E-value=10 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++|+.+|+.|+.++..|+.+|..+..++...+.+..+.
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444433333333
No 282
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=75.80 E-value=13 Score=31.69 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=25.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+-+||.++|..++-...+-..| .-+.|++.|..+++.+.++...+..+..+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl-----~ae~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINL-----KAEQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467777775222222222222 22445566666666666655555555444
No 283
>PRK02224 chromosome segregation protein; Provisional
Probab=75.64 E-value=31 Score=38.15 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018643 283 CEELQARVETL 293 (352)
Q Consensus 283 ~eeLe~kv~~L 293 (352)
+.+|+.+++.|
T Consensus 511 l~~l~~~~~~l 521 (880)
T PRK02224 511 IERLEERREDL 521 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 284
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.64 E-value=27 Score=35.36 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAE 282 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~ 282 (352)
+++|+++++|...-..=+||..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766655555433
No 285
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=75.55 E-value=19 Score=31.57 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=15.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQAR--VETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 279 Kq~~~eeLe~k--v~~Le~EN~~Lr~el~~L~~e~ 311 (352)
+++++.+|++. ...+......|+.+|+.....+
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544 4444444444444444444444
No 286
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.30 E-value=30 Score=37.73 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNEN 297 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN 297 (352)
.+..++.+|+.+++.++.+.
T Consensus 119 EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766653
No 287
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.16 E-value=29 Score=41.61 Aligned_cols=15 Identities=7% Similarity=-0.064 Sum_probs=7.8
Q ss_pred HHHHhHHHHHHHHHH
Q 018643 264 RKQSNRESARRSRLR 278 (352)
Q Consensus 264 Rk~~NRESARrSR~R 278 (352)
...+.++.|++.+.-
T Consensus 325 kLEkQaEkA~kyleL 339 (1486)
T PRK04863 325 DLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666655443
No 288
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=75.15 E-value=19 Score=33.85 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+....+|..|++.++.|..||.+|+..|--|.
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3344455777788888888888888887776553
No 289
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.07 E-value=15 Score=28.66 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+++++++..|+..+..+..++..+.+++..+..-+..|..
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555666666666666555555443
No 290
>PHA03162 hypothetical protein; Provisional
Probab=74.99 E-value=2.1 Score=37.94 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
+++.-+|+|+.++..|+-||..|+++|
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999988
No 291
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=74.84 E-value=12 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...|..+++.++++|+.|..+...|+.++..|+.+-.-|.++.+.-
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~ 97 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSE 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445556666666777777777666666666666644444444443
No 292
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.73 E-value=25 Score=39.25 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
+..+.|+++++.+.....+++..-++|...++.|+.|..+|++ ..++....+++.
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~--~~~~~~~~mrd~ 270 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR--SSLEKEQELRDH 270 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHhhhhhhcch
Confidence 4455566666666666666666666666666666666666664 333333444433
No 293
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=74.70 E-value=2.5 Score=38.73 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
-+.|+.++++|+.|+..|+.|+ .+++++.
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3445555555555555555555 4544443
No 294
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.70 E-value=36 Score=35.57 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|...-..|+.+|..|..+..+|..+...|..+-+.|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455554444444444444444444443
No 295
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.62 E-value=56 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 018643 310 ECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+-..|..|+..++.+|.+|.
T Consensus 99 qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665
No 296
>PRK15396 murein lipoprotein; Provisional
Probab=74.14 E-value=22 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++|..+|+.|..+..+|...+..++...+....|-.+--++|-.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766666666666665555555443
No 297
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.10 E-value=33 Score=34.47 Aligned_cols=23 Identities=26% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 272 ARRSRLRKQAECEELQARVETLS 294 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le 294 (352)
-+|.-+|+|.+.++|++....++
T Consensus 353 rqraeekeq~eaee~~ra~kr~e 375 (445)
T KOG2891|consen 353 RQRAEEKEQKEAEELERARKREE 375 (445)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444567777777776544433
No 298
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.01 E-value=40 Score=31.18 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENR 298 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~ 298 (352)
|.+..+++++|+.++..|+.+..
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555544444
No 299
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.87 E-value=57 Score=28.96 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 276 RLRKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr-------~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.++..+++.++..+..++.+...|+ .++..|+.++..++.+...++.++..+
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544444443 244444444444444444444444433
No 300
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.84 E-value=22 Score=28.63 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.+|++|+..|+-....-.+-|+.|...+.+......++..+|..|. +.+.++....
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 5688888888888888888888888888888888888888888886 5555555443
No 301
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=73.80 E-value=5.7 Score=37.36 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|...+.|+.....|+.+...|+.+...|+.+...++.++..
T Consensus 111 E~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 111 EKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 33334444444444444444444444444444444444333
No 302
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.77 E-value=17 Score=44.37 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=61.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.+...+.+++++.-=++.+..+++++..|++|+.+|+..+..+.+....++.|..++.++|..+...
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3457789999999999999999999999999999999999999999999999999999999997754
No 303
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.66 E-value=23 Score=35.06 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQR---LSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~---L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+---++++++++.+.-..|.-|..+|.. |-+..+.|+.|-+.|+.+|.
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777777777777777776643 33444555555555555554
No 304
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.49 E-value=37 Score=28.41 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...+|..|..++..|..+...|...|..+
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555554444
No 305
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.46 E-value=31 Score=37.69 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
..+|+.+++.|+.+++.|+.+++.+
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 306
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=73.38 E-value=10 Score=38.70 Aligned_cols=53 Identities=30% Similarity=0.555 Sum_probs=36.5
Q ss_pred CCCCchhhhhhhhcCCCCCC--CCCCCCCCC--CCCCCCccccCCCCCCCCCCCCCCCcc
Q 018643 26 PSYADWSSSMQAFYGAGATP--PPFFASTVA--SPTPHPYLWGSQHPLMPPYGTPVPYQA 81 (352)
Q Consensus 26 ~~~pdW~~~mQAYy~~~~~p--p~y~~s~va--~~~phPYmWg~q~~m~pPyGtp~PY~a 81 (352)
|.-.|-+ .+|.-|-+..+| .+||.-.-+ +.-|||-.|-. -|+|+||-.+||++
T Consensus 72 ~~p~dis-~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp~--y~~pt~~~~~p~p~ 128 (421)
T KOG3248|consen 72 PLPADIS-PKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWPV--YPIPTFGFRHPYPG 128 (421)
T ss_pred CCccccc-ccCCCCCCCCCccccccccCCccccccCCCccCCcc--ccCCCCCCCCCCch
Confidence 4557888 589766654443 467754333 46799999922 35678999999996
No 307
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=73.28 E-value=11 Score=38.22 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+|+.+++.|+.++..|..++..++.++..|+.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788888888888888888888888888888887774
No 308
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.18 E-value=56 Score=30.75 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...|-.-...+..||..|+.+|..|.+++..|+..+..|..+-..|.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677789999999999998888888888888887776664
No 309
>PHA03155 hypothetical protein; Provisional
Probab=73.17 E-value=4.5 Score=35.10 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
-+|+|+.++..|+-||..|+++|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998844
No 310
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.11 E-value=38 Score=37.35 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCcchh
Q 018643 316 SENNSIKEDLSRLCGPEAV 334 (352)
Q Consensus 316 ~EN~~Lk~~L~~l~g~~~~ 334 (352)
.++.+|..+|.+|.|..+|
T Consensus 300 ~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHhhcCceE
Confidence 5666677777777665443
No 311
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.08 E-value=34 Score=39.51 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+.+-|+-+++.|+.+...++.++..+..+|..|..|+..|...+....
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445555566666666666666666666666666666666666555544
No 312
>PRK12705 hypothetical protein; Provisional
Probab=73.06 E-value=51 Score=35.23 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+++.+.|+.....|..+...|..+...|......+..+|+.+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333333333333333333333
No 313
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.98 E-value=35 Score=36.87 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+.+|..+++.++.+...+..++..+++++..++.+...|+.+|.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 314
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=72.79 E-value=13 Score=31.27 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+...+-...+...|++.+..|..+|..|+.+|.++.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666666666666666654
No 315
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.76 E-value=12 Score=38.23 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 018643 282 ECEELQARVETL 293 (352)
Q Consensus 282 ~~eeLe~kv~~L 293 (352)
|.++|..+|+.|
T Consensus 47 EN~~Lk~eVerL 58 (420)
T PF07407_consen 47 ENNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 316
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.55 E-value=33 Score=38.22 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q 018643 291 ETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+.||-.|+++|..|+. +++.|+.|+.+|.+++.-|.
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~ 141 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLN 141 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443 34444444444444444443
No 317
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=72.53 E-value=22 Score=31.27 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
-++.|..=---|.-=|++|..||.++..++.-+..|..+|..|+..+.+.+..+..|+.
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33444444444455567888888888888888888888888888888888887776654
No 318
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=72.40 E-value=20 Score=35.79 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444433
No 319
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.38 E-value=33 Score=39.72 Aligned_cols=42 Identities=31% Similarity=0.493 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
++++..++..|+...+.|+.++..+.+++..++.+...++.+
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433333333333333
No 320
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.35 E-value=36 Score=37.27 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+++++..+++.|+++...-+.+|..|+.++++.+...++|++
T Consensus 106 ~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33455555555555555555555555555555555555444444
No 321
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.33 E-value=36 Score=40.27 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
..+.+.+.+ +..++++..++..++.+...++.++..+++++..|+.+...|+.++..|.+.+...
T Consensus 266 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~ 330 (1353)
T TIGR02680 266 RRATRLRSA-QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQ 330 (1353)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 333333333 34567778888888888888888888888888888888888888888887766554
No 322
>PRK11546 zraP zinc resistance protein; Provisional
Probab=72.31 E-value=14 Score=33.17 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk 322 (352)
=+..+.+|++++-..+.|...|.. +|..|..|+..|+.+..+++
T Consensus 59 f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 59 FYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444444444432 34444444444444444333
No 323
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.22 E-value=20 Score=31.25 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+..|+.-|++. +-++.+++++..++..+-.+...|..++..+..++..+
T Consensus 40 ~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666653 33345556666666555555555555555555555444
No 324
>PRK14160 heat shock protein GrpE; Provisional
Probab=72.15 E-value=23 Score=33.71 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.|+.++..|+.++..|..++..|+..+..+.++..-+
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 325
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=72.02 E-value=20 Score=30.37 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++...-+-|+.|+.-...|+++|+.|+.-...|...+.+
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555667778788888888888888888888877654
No 326
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.78 E-value=14 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSN---ENRNLRDELQRLSEECE 312 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~---EN~~Lr~el~~L~~e~~ 312 (352)
-+..+.+...+++.|+. .|+.|+.+|+.|+.++.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33344444445555554 45555555555555554
No 327
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=71.62 E-value=82 Score=28.82 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018643 248 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARV 290 (352)
Q Consensus 248 ~~~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv 290 (352)
+-|....+|++.||++...-.+.....--+|+.....+.+.+.
T Consensus 40 llDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~ 82 (157)
T PF15236_consen 40 LLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRR 82 (157)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667889888888766555555554444444444444433
No 328
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.59 E-value=13 Score=29.97 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.+...|..++..|+.+...|..+...|+..|..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555544
No 329
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=71.40 E-value=28 Score=34.43 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECE--KLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~--~L~~EN~~Lk~~L~~ 327 (352)
++..||+++..++.++.....+|..+++++- .+..+-..|.+..++
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEK 213 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665542 333444444444443
No 330
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.23 E-value=32 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~~L~~l 328 (352)
..++++.++..--.|...++..|-.|......++ .|..+|+.+|...
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5577777777777788888888877777766655 6777777777654
No 331
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.13 E-value=48 Score=33.16 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-+++-|..+++.|+....+|+.++.....+++.++.....|+.++..|...
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888888888888888888888888888743
No 332
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=71.05 E-value=38 Score=35.90 Aligned_cols=77 Identities=30% Similarity=0.349 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHHHHHHH--------------------
Q 018643 254 QDERELKRQKRKQSNRESARRSR--------LRKQAE---CEELQARVETLSNENRNLRD-------------------- 302 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR--------~RKq~~---~eeLe~kv~~Le~EN~~Lr~-------------------- 302 (352)
+-|...+|+||.+..|.++=.-+ .|-|.+ |-.|..-...|+.+|.+|++
T Consensus 48 qkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrdL~cfldddrqkgrk~arewq 127 (513)
T KOG3819|consen 48 QKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRDLCCFLDDDRQKGRKLAREWQ 127 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHH
Confidence 45666778888887777764322 233333 23344455556666666654
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 303 -------------------ELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 303 -------------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++..|+.+.+.|+.||-+|++-|....+
T Consensus 128 rfgr~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~~~~~ 174 (513)
T KOG3819|consen 128 RFGRQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCHSRLG 174 (513)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccC
Confidence 5677888888999999999998886433
No 333
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.93 E-value=32 Score=35.92 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
+..|+.++.....++..+++.|..+...+..|+.+-
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555444433
No 334
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=70.78 E-value=19 Score=36.56 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEEC---EKLTSENNSIKEDLS 326 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~---~~L~~EN~~Lk~~L~ 326 (352)
..+..|.+||++|++|+..|+.+. +.++.||..|+..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666666664433 445677776665443
No 335
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=70.65 E-value=16 Score=39.09 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++++.+-.++.++..||..|..+|..+++++..++.|+..|.+-|..+.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666667777777777777777777777776666665543
No 336
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.56 E-value=37 Score=30.54 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENN 319 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~ 319 (352)
+++.|+.+|.....+...|+. -++.|+.+++.|..+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 333444444444444444443 33444444444444444
No 337
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=70.55 E-value=11 Score=37.11 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++--||-+++....|+..|+.++..|+...+.++++.+..++.|+.|+.
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45556788888889999999999999999999999999999998888864
No 338
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=70.46 E-value=30 Score=32.10 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=5.9
Q ss_pred cCCCcccccc
Q 018643 207 MPATNLNIGM 216 (352)
Q Consensus 207 ~p~t~Lnigm 216 (352)
+|..-+|+|+
T Consensus 89 i~~s~VnDGI 98 (176)
T PF12999_consen 89 IPSSRVNDGI 98 (176)
T ss_pred eehhhhcCCc
Confidence 3455566765
No 339
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=70.40 E-value=25 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++..|+.++..|..|-.-=-++++.|-...++|+.++..|.+-|..|
T Consensus 14 ~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 14 KEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333444444444444444444444444443
No 340
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.31 E-value=19 Score=32.67 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLS-EECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~-~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|+...-.++....+|+.++..++ .+...|+.++..|+.++..|.
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 341
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=70.29 E-value=27 Score=37.13 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|.++.- ++|+..++.+.+.+..|+....+++.++..|+.++..|..+-+.|+.+|++
T Consensus 435 drl~~~L--~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 435 DRLVESL--QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 344445566666666666666666666666666666666666666666654
No 342
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.24 E-value=5.2 Score=41.80 Aligned_cols=40 Identities=38% Similarity=0.589 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++|..+|..|.++|..|+.+++.|+-.|..|..||.-|+.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 4566667777777777777777777777777777766653
No 343
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=70.18 E-value=18 Score=34.65 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQ---RLSEECEKLTS 316 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~---~L~~e~~~L~~ 316 (352)
...+|.++.+.|++||..|+.++. .|++|+++|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444444 33444444443
No 344
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=70.08 E-value=8.8 Score=31.11 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..|..||..|+.+|..|+.+++++..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666555444444433
No 345
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.92 E-value=7.2 Score=41.03 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcccCC
Q 018643 47 PFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYP 84 (352)
Q Consensus 47 ~y~~s~va~~~phPYmWg~q~~m~pPyGtp~PY~a~yp 84 (352)
++|+. ++|||.+= .+.+.||--.||.+|||
T Consensus 424 p~f~m----~~~hP~~~----~p~~~~g~~~P~~~mpp 453 (483)
T KOG2236|consen 424 PSFPM----FQPHPPES----NPPANFGQANPFNQMPP 453 (483)
T ss_pred CCCCc----cCCCCCCC----CCcccccccCccccCCC
Confidence 66665 36677654 46667777778777776
No 346
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=69.90 E-value=40 Score=38.31 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=39.3
Q ss_pred hhHHHHHHHHH-HHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKR-KQSNRESARRSR------LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 254 ~DEre~KR~RR-k~~NRESARrSR------~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..|.+...++| .+.||+=+.+-| ++-+..++.-...|+.++..+.....+++.|++.+..|+.+...|..+..
T Consensus 369 ~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~ 448 (980)
T KOG0980|consen 369 ALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYD 448 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444 466776655432 22222333333334555555555666666666666666666666655554
Q ss_pred Hh
Q 018643 327 RL 328 (352)
Q Consensus 327 ~l 328 (352)
+.
T Consensus 449 di 450 (980)
T KOG0980|consen 449 DI 450 (980)
T ss_pred HH
Confidence 44
No 347
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.67 E-value=22 Score=34.08 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+-+..||.-+..++.|....+..+.+|.+++..|+.+..+++.+
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888888888888777
No 348
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.57 E-value=76 Score=31.78 Aligned_cols=46 Identities=30% Similarity=0.549 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++|-.+|..+.....+|+.+-..+.+++..|+.+-..|.+++..|.
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 349
>PLN02678 seryl-tRNA synthetase
Probab=69.45 E-value=37 Score=35.67 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|..++..|++++..|+.+...|.++|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444443
No 350
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.35 E-value=17 Score=39.39 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++|+.+|+.|..+...|..++..|+.++.++..|..+++.++..+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443
No 351
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=69.32 E-value=39 Score=39.22 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=7.5
Q ss_pred CCCchhhhhhhhcC
Q 018643 27 SYADWSSSMQAFYG 40 (352)
Q Consensus 27 ~~pdW~~~mQAYy~ 40 (352)
|-..|..++.+-=|
T Consensus 527 v~~~y~~Aie~alG 540 (1163)
T COG1196 527 VKEKYETALEAALG 540 (1163)
T ss_pred cChHHHHHHHHHcc
Confidence 33466666665544
No 352
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=69.18 E-value=23 Score=35.85 Aligned_cols=52 Identities=25% Similarity=0.368 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+|..+.+++|+.+.+.|.++|...+..|..|...+..|..--.-|...|..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999999988888888777777776643
No 353
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=32 Score=37.47 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q 018643 288 ARVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+..|+.||-.|++++..|+. +++.|+.|+.+|.+++.-|.
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456677788888888777765 66777777777777665543
No 354
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.07 E-value=33 Score=29.80 Aligned_cols=44 Identities=34% Similarity=0.403 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..+.-.++.+...|+.++..+..++..|..+-..+..++..+
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444433
No 355
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.07 E-value=49 Score=33.09 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+-+|..++..|..+-..|-.+|..|+.+...+-.....|...+
T Consensus 49 kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 49 KVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333333
No 356
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=69.04 E-value=24 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
......|...|..|.+.+..|..++..+..+
T Consensus 107 ~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 107 EKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 357
>PF13514 AAA_27: AAA domain
Probab=68.96 E-value=55 Score=37.71 Aligned_cols=49 Identities=37% Similarity=0.565 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..|+.+...|..++..|..++..|..+...++.+|..|.+.+.+..|..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~ 940 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQ 940 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5677777888888888888888888888889999999988877777654
No 358
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=68.80 E-value=22 Score=31.48 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 334 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~ 334 (352)
..++.|+.++...+...+.-...|..|+..+..+..++.++..++..+-..+..
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~ 94 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDS 94 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccc
Confidence 345678888888888888888888888888888888888888886555444433
No 359
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.80 E-value=63 Score=34.94 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++|+.++..++.+...+..++..+
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l 235 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHL 235 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 360
>PF14282 FlxA: FlxA-like protein
Probab=68.67 E-value=23 Score=29.74 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNE 296 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~E 296 (352)
..+..|+.++..|+.+
T Consensus 51 ~q~q~Lq~QI~~LqaQ 66 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQ 66 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 361
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.67 E-value=31 Score=38.71 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 281 AECEELQARVETLSNENRNLRD---------------------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~---------------------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..+.++..++..+..||..|.. ++..|...++.++.||..|+-+|.-+.-.-.|++.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776665 4556777777777888888877777766666666665
Q ss_pred cCCC
Q 018643 340 SNPT 343 (352)
Q Consensus 340 ~~~~ 343 (352)
....
T Consensus 172 ~~~~ 175 (769)
T PF05911_consen 172 EYSR 175 (769)
T ss_pred HHhH
Confidence 5443
No 362
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=68.64 E-value=7 Score=36.77 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+|+.+...|+.+++.|..++..|..|+..|+.++..+..
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 34555555555555555555555555555555555555443
No 363
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=68.60 E-value=11 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
++|-|..++..|++.|..|++|...|
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 364
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.59 E-value=21 Score=29.54 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~ 308 (352)
++.+.|++||+.|+.|....+
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~ 50 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAE 50 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555554433
No 365
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.52 E-value=19 Score=40.06 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|+.+...|+.|..+++.+-.+|-.+|..|+.||-.|..++.-|.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555566666666655555544
No 366
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.42 E-value=47 Score=34.08 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=36.0
Q ss_pred HHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 261 RQKRKQSNRESARRSRL---RKQAECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 261 R~RRk~~NRESARrSR~---RKq~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.|+...|-|--|+.|+ .+|.+.++|+.+-+.|..+.-..+. +...|+.-+..++.||..|..+|.++.
T Consensus 76 kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445566666655443 4455555555544444444333222 234444455566677777776666653
No 367
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.31 E-value=46 Score=27.05 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+|..++...+.|+..|..-+..|+.++.....-|..|..++..++
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666777777777766666666666666666554
No 368
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.22 E-value=14 Score=36.27 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.+.+|++++..|+.+.++|+. +++|+.+.+..+.+....-.+|..+.+..
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 357788888888888888887 77777777667666666666677776654
No 369
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=68.10 E-value=20 Score=28.31 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
.|..+++.|+..|..|..-++..+.+++.|.....
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lg 36 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLG 36 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666665555555555555544333
No 370
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.00 E-value=1e+02 Score=29.46 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|+..+..|..++..|+.....|+.+
T Consensus 118 l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 118 LKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 371
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=67.94 E-value=18 Score=33.38 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+|+.+.+.|+.++..|+.+...+++++.
T Consensus 115 kl~~~~e~L~~e~~~L~~~~~~~~eDy~ 142 (170)
T PRK13923 115 KLQEEEEKLSWENQTLKQELAITEEDYR 142 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 372
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.83 E-value=25 Score=30.31 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++.|+.....|...+..++++++.+.....+|
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 373
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=67.83 E-value=13 Score=38.58 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
++++.|++.+.+.|+..|..|..++++|+.++..
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446666667777777777777777777666653
No 374
>PHA03161 hypothetical protein; Provisional
Probab=67.69 E-value=35 Score=31.02 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
.-|.+-|+.+.+|+. .+|+..|..|..+.+..++|+..|..
T Consensus 42 ~t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 42 HTKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555554444443 55666666666666666666655554
No 375
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.64 E-value=81 Score=28.10 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+.......+..-++.++.|..||..|+..-..-- |++|.-|++
T Consensus 69 ~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~L-Pd~V~RL~~ 111 (135)
T TIGR03495 69 QLAQARALLAQREQRIERLKRENEDLRRWADTPL-PDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCC-cHHHHHHhc
Confidence 3333444445555667778888888877655432 566666654
No 376
>PRK14156 heat shock protein GrpE; Provisional
Probab=67.50 E-value=12 Score=34.60 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
+++.|+.+...|+.++.++..+++-++....+=++++.+.....-+.+|+..+|+
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDn 89 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDN 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3344444444444444444444444443333333344444434444444444443
No 377
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=67.49 E-value=18 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L 307 (352)
|++++.|+++|..|+.+++.|
T Consensus 46 erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554
No 378
>PRK10963 hypothetical protein; Provisional
Probab=67.48 E-value=16 Score=34.41 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEE 310 (352)
Q Consensus 296 EN~~Lr~el~~L~~e 310 (352)
+|+.+..++..|.-.
T Consensus 69 ~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 69 ANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554433
No 379
>PRK04863 mukB cell division protein MukB; Provisional
Probab=67.36 E-value=46 Score=39.97 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.+++.++.+...++.++..+..++..++.+...|+.
T Consensus 360 Lee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 380
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.31 E-value=26 Score=39.21 Aligned_cols=62 Identities=37% Similarity=0.544 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEEC----------------------------EKLTSENNSIKEDLSR 327 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~----------------------------~~L~~EN~~Lk~~L~~ 327 (352)
+-+-.+++..|..+++.++.||..|+-++..|.+++ ..|+.|.++|+.-+++
T Consensus 129 ~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 129 KSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456678889999999999999998887776644 3556666666665543
Q ss_pred -hcCcchhhch
Q 018643 328 -LCGPEAVANL 337 (352)
Q Consensus 328 -l~g~~~~~~L 337 (352)
|.||..|+..
T Consensus 209 ~lpgpaa~a~m 219 (769)
T PF05911_consen 209 KLPGPAALAQM 219 (769)
T ss_pred cCCChHHHHHh
Confidence 5566655543
No 381
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=67.28 E-value=19 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
++||+.++..|+.|+..++.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665544
No 382
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=67.06 E-value=12 Score=32.82 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.++++++++.|+.+...|..+++.++
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777666666554
No 383
>PHA03011 hypothetical protein; Provisional
Probab=67.05 E-value=33 Score=29.52 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE-------ECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~-------e~~~L~~EN~~Lk~~L~ 326 (352)
.+++|..+...|..|-.-+..++..|.. ++.-|++|..+||+.+.
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555444443 44445555555555544
No 384
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.88 E-value=55 Score=25.02 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018643 306 RLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-+.....+..+...|.+.|..|
T Consensus 43 ~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 43 KEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555556665555544
No 385
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=66.81 E-value=46 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++.++..|...++.|..+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888999999999999999999998875
No 386
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=66.71 E-value=10 Score=37.03 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCcchhhchhhcCCC
Q 018643 301 RDELQRLSEECEKLTSENNSIKEDLS-------RLCGPEAVANLEQSNPT 343 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~-------~l~g~~~~~~L~~~~~~ 343 (352)
-.+..+|+.++..|..|.+.|+.++. ++.|...--.|..++++
T Consensus 220 ~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~~vpLsei~~a 269 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETVSVPLSEILDA 269 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEeeccHHHHHHh
Confidence 33445555555555555555555544 45555444444444444
No 387
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.65 E-value=73 Score=33.90 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
.++.++..++.++..|..++..|+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 388
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.64 E-value=25 Score=34.32 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+..+++++..|..|...|..++...+
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 389
>PHA03162 hypothetical protein; Provisional
Probab=66.60 E-value=8.5 Score=34.25 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56778888999999999999998876665
No 390
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.59 E-value=25 Score=29.69 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----cchhhchhhcC
Q 018643 305 QRLSEECEKLTSENNSIKEDLSRLCG-----PEAVANLEQSN 341 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g-----~~~~~~L~~~~ 341 (352)
..-+.+...+...|..|..+|..... +..|..|+..+
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777777666542 34445554443
No 391
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=66.59 E-value=59 Score=28.17 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.++.....++.++.....|-.-=....+|+...+.||..|+..|..
T Consensus 13 ~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 13 QAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 333444444444444444444444445566777778888888877754
No 392
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=66.56 E-value=40 Score=33.21 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018643 314 LTSENNSIKEDLS 326 (352)
Q Consensus 314 L~~EN~~Lk~~L~ 326 (352)
|+.++..|+.+|.
T Consensus 214 lr~~~~~l~~el~ 226 (264)
T PF07246_consen 214 LRNESKWLEHELS 226 (264)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444443
No 393
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.56 E-value=63 Score=30.55 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
|.+.+.|....++.++|..++..|+.+.+.|+.++..+++.--+.......+
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHL 156 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3444455555555566667777777666667766666655444443333333
No 394
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=66.51 E-value=43 Score=26.05 Aligned_cols=44 Identities=7% Similarity=0.317 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++++++..++.+...+..++..|+.....+..+...|..+|.++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444
No 395
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.40 E-value=52 Score=35.87 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|.+...|+.|...++.+-.+|-.++..|+.||-.|..++..|++
T Consensus 148 E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 148 EDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 33444455555555555566666666666666666666555543
No 396
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=66.40 E-value=21 Score=37.52 Aligned_cols=53 Identities=23% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
+++|...++.|+.+|++|+..++.|++.+..++.+.-+||.....+.-....+
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~a 460 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNA 460 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 34444455555555555555555555555555555555555555544333333
No 397
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.39 E-value=82 Score=31.09 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 251 QWIQDERELKRQKRKQSNR---------------ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 251 ~~~~DEre~KR~RRk~~NR---------------ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+.+.-|-++|..|.+.-.| ..++.--..-++.|+.|+.....|+...+..+.++++.++.+..|.
T Consensus 138 dlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 138 DLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHhc
Q 018643 316 -------SENNSIKEDLSRLC 329 (352)
Q Consensus 316 -------~EN~~Lk~~L~~l~ 329 (352)
.|-..|.++|.++.
T Consensus 218 ~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 218 SVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred hcChHHHHHHHHHHHHHHHHH
No 398
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.25 E-value=39 Score=28.87 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..++...+.....+.+|++.|.-.+.+|......|..+|.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.24 E-value=13 Score=36.86 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++.|+.++..++.++..++.|...|+++|.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444445555555555566655544
No 400
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=66.21 E-value=40 Score=27.45 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+++|...|..|......|...++.++.+.+....|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445777888888888888888888888888888888888888887654
No 401
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.17 E-value=13 Score=35.12 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.....++..|++++..|..|+..|+..+..+
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3333333444444444444444444444443
No 402
>COG4420 Predicted membrane protein [Function unknown]
Probab=66.16 E-value=32 Score=32.37 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
|...|..+|..|....-.++.|+..|++.|.++..+.
T Consensus 135 e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~ 171 (191)
T COG4420 135 EVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPEL 171 (191)
T ss_pred HHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCccc
Confidence 4455555555555555556666666666666665443
No 403
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=66.04 E-value=28 Score=27.80 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
|...|..|..|++.|..++..+++++..++.+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665554
No 404
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.01 E-value=12 Score=37.13 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 295 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~ 295 (352)
-|--+|..|-| =+|+.+|-.. +..+|++|..++.++++
T Consensus 66 KEV~iRHLkak--Lkes~~~l~d-RetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 66 KEVCIRHLKAK--LKESENRLHD-RETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHH--HHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 34434444433 3444444444 34556666665554433
No 405
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.88 E-value=31 Score=31.80 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
++.++..|+.....+...+..|+..+..|+.....|+.+...|.......
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555555554444433333
No 406
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.73 E-value=1.1e+02 Score=27.94 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 262 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRD 302 (352)
Q Consensus 262 ~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~ 302 (352)
+.+....-+.|.+.+..-++...+.+.++...+.|-..+..
T Consensus 64 ~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 64 QGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444433
No 407
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=65.63 E-value=4 Score=43.21 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
+|+.|++|+++|++|...|..++.+.+.......|....
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~ 70 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGG 70 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEee
Confidence 555555555666666566666666665555555554433
No 408
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=65.53 E-value=28 Score=32.95 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+.+++..|+.||..|++-...+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888877655443
No 409
>PRK06835 DNA replication protein DnaC; Validated
Probab=65.49 E-value=55 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018643 308 SEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++.|+.++..|+++...|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554443
No 410
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=65.43 E-value=20 Score=33.87 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
++|..++..+++|+..||+=|..-+++|.+|+..
T Consensus 47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888888777777777666543
No 411
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=65.34 E-value=18 Score=33.64 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
++..|+.++..|+.++-++..+++-++....+=++++.+.....-+.+|+..+|
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviD 97 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVID 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433333344444433344444444333
No 412
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=65.32 E-value=36 Score=33.67 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|.+++..|+.++..|..+...|++.+.++
T Consensus 230 srLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 230 SRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 413
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=65.24 E-value=46 Score=26.36 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
...+..|+..+..+..++..|+..++.+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555556666666665554
No 414
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=65.19 E-value=39 Score=31.27 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
++..|+.+|..|..++..|+.+...+.
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~ 138 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITE 138 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333
No 415
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=65.18 E-value=32 Score=33.88 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 018643 307 LSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+++...|+.|+...++.+..+
T Consensus 214 lr~~~~~l~~el~~aK~~~~~~ 235 (264)
T PF07246_consen 214 LRNESKWLEHELSDAKEDMIRL 235 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 416
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=65.17 E-value=40 Score=37.20 Aligned_cols=43 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+..|+.++..|+.+...|+.++..+.++++.+..++..|..+|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 285 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL 285 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554444444444443333
No 417
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.16 E-value=14 Score=37.60 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
..|..+++.++.....|..++..+......+..++..|...|.+|..-..-.+|.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeE
Confidence 46677777777777777777777777777777777888888887765444445544
No 418
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=65.14 E-value=45 Score=35.10 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
..=+|+.++-++||.=..+|+.-+.....-++..+.+..
T Consensus 153 EnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtn 191 (558)
T PF15358_consen 153 ENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTN 191 (558)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 333444445555555444444444444444443333333
No 419
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.09 E-value=18 Score=40.69 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+++|...+..+..+..+|.-+++.|++....|..||..|.+++..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666655
No 420
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.07 E-value=56 Score=37.82 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+-|.++|..++..++.++..++.+...|+.++..|.
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444443
No 421
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.04 E-value=37 Score=32.05 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..++.++..++.+++.++.+...++.++..
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 105 DDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444444444444444433
No 422
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=65.00 E-value=14 Score=39.47 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLE 338 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~ 338 (352)
|+.+|..|..++.+|.+.+.+.+.|...|+++|.+|.. +.....+.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 52 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFL 52 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 33444444444444445555666666666677776655 33444444
No 423
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.99 E-value=33 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.....|..++..|..++..|..+...|+.+|..+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666666654
No 424
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.98 E-value=31 Score=35.70 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|..+...|++++..|+.+...++.+...+...|-.+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444444444444444444444444444433
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=64.89 E-value=31 Score=37.22 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.+++.||.+++.|+.+..+|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777766555544
No 426
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.85 E-value=26 Score=33.32 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643 281 AECEELQARVETLSNENRNLRD---------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~---------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
++..+++.+++.|+.+-..|++ ++-.+++++..++.|.++|+.++..|...-..+++
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti 197 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTI 197 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEE
No 427
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.75 E-value=57 Score=37.73 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 268 NRESARRSRLRKQAECEELQARVE-------TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~-------~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++..++--..|..++.+|+..+. .+-+++.+|+.+++.|......|..|-..|+..|..+
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~ 486 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANL 486 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333 3333444444444444444444444445555444444
No 428
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.68 E-value=18 Score=35.32 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=7.1
Q ss_pred cCCCCCCCC
Q 018643 88 VYAHPSMAT 96 (352)
Q Consensus 88 vyaHP~mp~ 96 (352)
+|+.-++|-
T Consensus 72 ~y~~esvPr 80 (289)
T COG4985 72 LYARESVPR 80 (289)
T ss_pred HHHhhcccH
Confidence 688888884
No 429
>PLN02678 seryl-tRNA synthetase
Probab=64.57 E-value=31 Score=36.17 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=4.8
Q ss_pred chhhchhhcCCC
Q 018643 332 EAVANLEQSNPT 343 (352)
Q Consensus 332 ~~~~~L~~~~~~ 343 (352)
+.+..+...++.
T Consensus 99 ~~l~~~~~~iPN 110 (448)
T PLN02678 99 AALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHhCCC
Confidence 333344444443
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.55 E-value=78 Score=35.21 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el 304 (352)
+|+++++.|++.-..|.+++
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~ 602 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERY 602 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 431
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.51 E-value=46 Score=26.56 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++-+.++++.++.|+.+...+..|+..+-++...+...-....+.+..+- +.+.++...
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~--~~v~~~g~~ 83 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVF--EAVADLGES 83 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHH
No 432
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.47 E-value=96 Score=32.56 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+-++++..|..+...|+.+...|..+-..|..+.+.|.++-..|.
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443
No 433
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=48 Score=36.83 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 018643 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~ 333 (352)
+.++..-=|.+++..+.+++.++.....+..+|..+......|..|+.+|+.+|..+...+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455555677888888899999999999999999999999999999999999998876555
No 434
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.33 E-value=16 Score=38.84 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.+|++++..|.+.|..|...+...+.++..|+.|..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999875
No 435
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=64.29 E-value=35 Score=35.99 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++.|+.-.+..++|..+-+.-+.+|+++|..=+
T Consensus 244 ~ee~tkrm~eqrkrer~e~~aareRI~aqiaadr 277 (506)
T KOG2507|consen 244 TEENTKRMREQRKRERKEGTAARERILAQIAADR 277 (506)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 5666666677777777777777888888776543
No 436
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.23 E-value=40 Score=36.80 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|.+.|......|+..+..|..++..|+++..........|...|.+|
T Consensus 13 rd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 13 RDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444333
No 437
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.05 E-value=21 Score=42.23 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
.+|.+|++++..|+.+...|..++..|......|..|
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444444
No 438
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=63.95 E-value=27 Score=36.58 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL----------QRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el----------~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++|+-|.-|-+-+-..+-+++.+|..|+.+...|++-| ..|++.+...+.+...|.++...|....
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq 474 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQ 474 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555544444444566677777777777777776654 3466666666666777776666665433
No 439
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.93 E-value=1.1e+02 Score=30.23 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 018643 290 VETLSNENRNL 300 (352)
Q Consensus 290 v~~Le~EN~~L 300 (352)
+..++.+...+
T Consensus 212 l~~~~~~l~~~ 222 (423)
T TIGR01843 212 LGRLEAELEVL 222 (423)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 440
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=63.78 E-value=21 Score=35.34 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
-++.|+.++..|++||..|+.+++.|+.+++....=...+-
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777666555554444433333
No 441
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=63.69 E-value=16 Score=31.50 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++..+|++||.-|+-+++.|-.
T Consensus 79 kk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 79 KKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777766633
No 442
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=63.64 E-value=89 Score=26.28 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.++..+...+..|..|...+..-+.-.+.+...+.+|+
T Consensus 36 ~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r 73 (110)
T PF10828_consen 36 AQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLR 73 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333333333333
No 443
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.64 E-value=16 Score=36.25 Aligned_cols=39 Identities=38% Similarity=0.588 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.|+.+++.|+.+...|+.++..+++++..++.++.+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555666666666666666666666666666666653
No 444
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.58 E-value=1.1e+02 Score=28.60 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSE--------ECEKLTSENNSIKED 324 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RK-q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~--------e~~~L~~EN~~Lk~~ 324 (352)
..+.++=+.-..-.|=.-.=+.++|| +..+..++.++.....+...++.++..|+. +.+.|..+...|..+
T Consensus 54 ~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~ 133 (194)
T PF15619_consen 54 DTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQK 133 (194)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q ss_pred HHHhcCcchhhchhhcC
Q 018643 325 LSRLCGPEAVANLEQSN 341 (352)
Q Consensus 325 L~~l~g~~~~~~L~~~~ 341 (352)
|..-. ..+.+|..++
T Consensus 134 l~~~~--~ki~~Lek~l 148 (194)
T PF15619_consen 134 LQEKE--KKIQELEKQL 148 (194)
T ss_pred HHHHH--HHHHHHHHHH
No 445
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.56 E-value=24 Score=28.54 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.+...|..++..|+.++..|+.|...|.
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444443
No 446
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.49 E-value=36 Score=32.99 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.-+|..++.+++-+..++.+...|..+++.|+.+.+.. |..|++++.+..
T Consensus 158 R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 158 RDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345555555555555555555556666666665555544 555666666654
No 447
>PHA03155 hypothetical protein; Provisional
Probab=63.44 E-value=10 Score=32.93 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~ 38 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPE 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 46677777889999999999987754443
No 448
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.22 E-value=38 Score=27.74 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=21.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 271 SARRSRLRKQ----AECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 271 SARrSR~RKq----~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+-++-|.||. ..++.|..++..|..+|..|+.++.
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555554 3556666677777777777666653
No 449
>PRK14161 heat shock protein GrpE; Provisional
Probab=63.09 E-value=33 Score=31.67 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
.++++++|..++..+.++.+.+|.+..
T Consensus 31 l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 31 LKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554443
No 450
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=63.01 E-value=1.2e+02 Score=27.57 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=20.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDE 303 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~e 303 (352)
|+.+...+-+.|.+.+..=.+...+.++++..-+.+-..++.+
T Consensus 42 R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 42 RQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444444444444444444333
No 451
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.99 E-value=40 Score=28.97 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
...|..+++.+..++..|+.....|+.+|.+++ +.++.|.+.
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q--~~l~~ll~~ 114 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQ--AKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 344666666666666666666666666666665 555555543
No 452
>PRK14150 heat shock protein GrpE; Provisional
Probab=62.93 E-value=22 Score=33.16 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 301 RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
+.++-++..+++-++....+=++++.......-+.+|+..+
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~ 98 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVI 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333344433333333333333333333333433333
No 453
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.93 E-value=63 Score=39.87 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 018643 284 EELQARVET 292 (352)
Q Consensus 284 eeLe~kv~~ 292 (352)
.+|+.++..
T Consensus 904 ~~le~~l~~ 912 (1930)
T KOG0161|consen 904 QELEKELKE 912 (1930)
T ss_pred HHHHHHHHH
Confidence 333333333
No 454
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.91 E-value=37 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.|+++++.|+.+...|..++..++.++..|+.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333
No 455
>PF15556 Zwint: ZW10 interactor
Probab=62.82 E-value=1.1e+02 Score=29.55 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+++..+.|.-.++..-.-+..+..|.....+++.+....+++++.|..|...|+.+...-+
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777888888888888888888888899999999888888776543
No 456
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=62.80 E-value=62 Score=37.85 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
+.|..|.+++..+.++...|..+|.+.+.++..+. +..+++..+
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~--q~~~~i~eQ 308 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVR--QALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45777777777777777777777777777776665 444444443
No 457
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=62.67 E-value=20 Score=34.53 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=7.1
Q ss_pred HHHHHHHhcCcchhhch
Q 018643 321 IKEDLSRLCGPEAVANL 337 (352)
Q Consensus 321 Lk~~L~~l~g~~~~~~L 337 (352)
|+..|..+-.++.++.|
T Consensus 47 l~~~L~~~Fs~~Qi~~l 63 (236)
T PF12017_consen 47 LENSLKQIFSEDQIRNL 63 (236)
T ss_pred HHHHHHHhCcHHHHHHH
Confidence 33444444444444443
No 458
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.31 E-value=49 Score=34.18 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 269 RESARRSRLRKQAECEELQARVETLSNENRNLRD-------------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~-------------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+...++...+-++++.+|+.+++.|+.....|.. ++..|.+.+..|..+..+|++++..|.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.27 E-value=34 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..+|+.+++.|..++++++.+..+|..+|.+
T Consensus 108 ~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 108 IMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555555555555555555444433
No 460
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=62.20 E-value=36 Score=34.81 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDE----------LQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~e----------l~~L~~e~~~L~~EN~~Lk~~ 324 (352)
++++.|+.+++.|+.+...|..+ +..|+++++.+..+..++++-
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666655555554 444444444444444444443
No 461
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.18 E-value=36 Score=28.17 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
..|+.+++.|+.+...|..++..+..++..|+.+...
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 462
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.00 E-value=59 Score=36.60 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.+|.......+.|+.+.++|.+.++.++.||.+|...+.
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555555443
No 463
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.97 E-value=37 Score=36.81 Aligned_cols=53 Identities=34% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRD----------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~----------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+.+.+|++-|.+++.|+.+|..|+. +++++..+.++|..+...+..++..|.
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=61.87 E-value=83 Score=28.97 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQ--------------------AECEELQARVETLSNENRNLRDELQRLSE----- 309 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq--------------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~----- 309 (352)
++.++.+.+....-|.+---...=++ ++++-|+.+.+.|.++...|...++.+..
T Consensus 39 ~~~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY 118 (175)
T PRK13182 39 TEEDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY 118 (175)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 310 ECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
++.+=+.|..+|..+|..|. ..|..+++....
T Consensus 119 qll~hr~e~ee~~~~l~~le--~~~~~~e~~~~~ 150 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLE--ARLKKLEPIYIT 150 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHH--HHHHHHHhhccC
No 465
>PRK14148 heat shock protein GrpE; Provisional
Probab=61.71 E-value=28 Score=32.71 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.+++.|+.+...|+.++..|+.++..+.+|..-++.++.+
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.67 E-value=30 Score=28.80 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++.|+++++.|+.+...|..++..++.++..|+.+..++
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 467
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.62 E-value=95 Score=25.93 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-.+++.+...+-..=..+-.--.+.......+++.-.........+|..|..++..|..+...|...|..+
T Consensus 34 e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 34 EEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=61.60 E-value=32 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.=|..|.++...+++. +.|+.||.+|+.-|.+.
T Consensus 23 ~~l~rY~~vL~~R~~l~~e~-~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAALIQEK-ESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
No 469
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=61.52 E-value=67 Score=29.39 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++..+++.+-+.|...-.||++.++.|...-..-......+..+|..++.....++.+...+...+..
T Consensus 127 l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 127 LNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.49 E-value=40 Score=34.84 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++++.+...++...=+..+.+...+..+...-.........|+.....|.+++.+|..+...|+++|..+
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 471
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.46 E-value=1.2e+02 Score=32.35 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECE----ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~e----eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+.+.-++++.+..+..+.+.++....++. .++.++..++.++..|..++..|+.+++..+....+-++.|.+..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~ 108 (475)
T PRK10361 29 QQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSE 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=61.42 E-value=54 Score=26.05 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
.+.+++...++..-..|+..+...+.+...|...+..|..++..|. +.+..|.+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls--~ql~rLs~ 70 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS--EQLERLSQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcC
No 473
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=61.41 E-value=1.1e+02 Score=26.60 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++....+..|=-.|-+=+...++=+.+...|+....+.+.+|++|+-+++.|..--....+-|..|
T Consensus 55 ~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 55 KRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 474
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=61.37 E-value=68 Score=26.22 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSNENRNLRD------------------ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~------------------el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++.+-+..|..=++++.+|+.+++.=..-+..|.. .+..|-.++..|+.|...|..++..|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c
Q 018643 329 C 329 (352)
Q Consensus 329 ~ 329 (352)
+
T Consensus 81 ~ 81 (88)
T PF14389_consen 81 Y 81 (88)
T ss_pred H
No 475
>PHA02109 hypothetical protein
Probab=61.35 E-value=24 Score=33.15 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
|.+++-+|+-+++.|..|..+|+.+|..++.+...-.+|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.32 E-value=13 Score=32.46 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 336 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~ 336 (352)
++.|..++.+|+.||..|+.+|..-.++..+..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~ 37 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPD 37 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCC
No 477
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=61.20 E-value=75 Score=29.67 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 258 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 258 e~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.+.|++..+.=-.+.-|+|=.|.+ ++-..+++.|++++..|+.+|+.-.++++.|..=-++|..+
T Consensus 102 QlWRe~Q~lql~L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSR 166 (179)
T PF13942_consen 102 QLWREQQVLQLQLSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSR 166 (179)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
No 478
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=61.18 E-value=35 Score=30.65 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+.++++|..+++.|+++.+.|+.++..|......++.-...|+.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=61.17 E-value=42 Score=28.11 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
+..-+..|+.+++.++.....|..++..|+.++..++.+...|
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=61.16 E-value=80 Score=29.77 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++.||.+..-+--+| +...++..--.=...|+.|-..|+.+|+.=+.....++.|+..+..+|.+
T Consensus 108 E~rhrr~i~eLe~EKr---kh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 108 EKRHRRTIQELEEEKR---KHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=61.16 E-value=51 Score=34.01 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQAR----VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~k----v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~ 333 (352)
++.|..+..-+..|.-|.+--.++..+... ++.|.++..+|++++..|+.+...++.+...+...|-.+-.++.
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
No 482
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.90 E-value=58 Score=30.78 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+..-.--...+++..+++..++.+......++..+...+..|..+...+...|..|.
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
No 483
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=60.89 E-value=20 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+...+..++..|++++.+|+.||..|+.-+.
T Consensus 71 ~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 71 SELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=60.83 E-value=35 Score=28.15 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..++.|..-+..|++.|..|..+|..|-+.+.+.+.|.++...+
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
No 485
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.81 E-value=33 Score=34.21 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+....+-+.+.-...++.+.+++.++..|+.+...|+.+++....+...|+.+......+|..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 486
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.81 E-value=76 Score=33.36 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhHHHHHHHH----HHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQK----RKQSNRESARRSRLR--KQAECEELQARVETLSN--------------ENRNLRDELQRLSEECEK 313 (352)
Q Consensus 254 ~DEre~KR~R----Rk~~NRESARrSR~R--Kq~~~eeLe~kv~~Le~--------------EN~~Lr~el~~L~~e~~~ 313 (352)
+-+||+.|.| |.+..--+|--|-.- |.++.++|+++++.-+. +.+.++.+|+.|.+++.+
T Consensus 360 qHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 360 QHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 018643 314 LTSENNSIKEDLSR 327 (352)
Q Consensus 314 L~~EN~~Lk~~L~~ 327 (352)
--.||..|...|+.
T Consensus 440 KCLEnahLaqalEa 453 (593)
T KOG4807|consen 440 KCLENAHLAQALEA 453 (593)
T ss_pred HHHHHHHHHHHHHH
No 487
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.63 E-value=2.8 Score=35.66 Aligned_cols=44 Identities=39% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 333 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~ 333 (352)
+..|+.+.-.|.+++..|..++..|+.|...|++++..|.....
T Consensus 1 ~~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~ 44 (118)
T PF08286_consen 1 IQELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEV 44 (118)
T ss_dssp ------------------------------------------HT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 488
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=60.44 E-value=23 Score=27.53 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.+|..++.-..-|+.+...+ +..|-.|...|+.++.+|.
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccc
No 489
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=60.32 E-value=39 Score=35.39 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCCCCCCcccCC
Q 018643 282 ECEELQARVETLSNENRNLRDELQR---------LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEENS 352 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~---------L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~~~~~~~~~~ 352 (352)
.++-|++|++.|+.+...+...+.. ++.+++.|..+...|++++.-|+ ..+.+|..............+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~--~~l~~l~~~~~~~~~~~~~~~ 241 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLE--NMLEDLEDSESSSDQSSSSSS 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccccCCCCCCCC
No 490
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.27 E-value=83 Score=37.12 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 253 IQDERELKRQKRKQSNRES---ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRES---ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++..++++.++..-+|+= ++..-....+.+.+++.+...|++++..|+.+++.+++....+..++..+-...+.|.
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 491
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=60.15 E-value=29 Score=34.83 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.|+...|=+...|-.++=....++-..-|..++..|++++..|-.|+..||+
T Consensus 287 e~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 287 EATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
No 492
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=60.05 E-value=42 Score=35.19 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCCCCCCccc
Q 018643 280 QAECEELQARVETLSNENRN---------LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPTQSCGEEE 350 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~---------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~~~~~~~~ 350 (352)
++++++|+++++.++..... ++.+++.|.+++..|+....-|...|..|........-....+..+.-.+.
T Consensus 169 ~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T PF10359_consen 169 QERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQSSSSSSESSSSDS 248 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccccc
Q ss_pred CC
Q 018643 351 NS 352 (352)
Q Consensus 351 ~~ 352 (352)
.+
T Consensus 249 ~~ 250 (475)
T PF10359_consen 249 SS 250 (475)
T ss_pred ch
No 493
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=59.93 E-value=87 Score=24.95 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 271 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 271 SARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
..++.=.+=.+.++.|+++++.+..|...|..+.+.+.+..+........+-..+.++- +.+++|-++
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g--~~v~~l~~s 90 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG--ESVSELNSS 90 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHhcC
No 494
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.93 E-value=31 Score=27.69 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
+..|+.+...|..++..|+.+...|..+...|+..|..+-+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 495
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=59.75 E-value=82 Score=36.81 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+.+....+.....-+.|+.......+.+..|+.+...++.+......++..++.+...++.+...|...|
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.74 E-value=1.6e+02 Score=27.85 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.+..-.|=.+-..+-.+=-...+.++.++..|+......-.++..+...+..|..++..|..+|...
T Consensus 147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=59.73 E-value=95 Score=36.08 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQ-ARVETLSNENRN-LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe-~kv~~Le~EN~~-Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+|..+.++.++.|.-.+|-.++.+++.|.+| ++.+.++.|-.+ -+.+-++++++-.+-+.+.+.=++++.++.
T Consensus 441 e~e~~er~~~er~~~E~er~er~e~e~~er~Erer~er~erer~Erer~erEr~erer~erer~~r~e~er~~r~e 516 (1021)
T PTZ00266 441 EKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLE 516 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK14143 heat shock protein GrpE; Provisional
Probab=59.65 E-value=25 Score=33.99 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++..++..|+.+...|+.++..|+.++..|.++..-+|.+..+
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.38 E-value=1.2e+02 Score=28.37 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++++.+-+.=..++||.=-|.=+-++ ...+..+..|+.+...++..+..|+..+..|+.+...++.+-..|
T Consensus 69 ~~~~~~A~~Al~~G~EdLAr~Al~~k---~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 69 ADWQEKAELALSKGREDLARAALIEK---QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=59.35 E-value=85 Score=25.58 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDE-----------LQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~e-----------l~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+.++.+.+|+.++..|+.+...|..+ .-.|-.+|..++.--..|...|..++|
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~rg 67 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQRG 67 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Done!