Query 018643
Match_columns 352
No_of_seqs 216 out of 1152
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 4E-14 1.4E-18 105.2 6.3 53 260-312 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.3E-12 4.6E-17 99.1 10.4 58 260-317 2-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 1.6E-12 5.6E-17 97.8 9.3 57 260-316 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.3 1.4E-12 4.9E-17 98.5 7.0 57 260-316 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 4.9E-12 1.7E-16 96.3 6.8 52 261-312 10-61 (63)
6 1ci6_A Transcription factor AT 99.2 3.1E-11 1.1E-15 91.7 7.1 57 259-315 1-57 (63)
7 1gd2_E Transcription factor PA 99.2 8.1E-11 2.8E-15 91.5 8.4 61 262-322 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 99.0 2E-09 6.9E-14 86.8 8.6 63 261-323 16-78 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 5.6E-09 1.9E-13 82.7 8.4 55 261-315 16-70 (78)
10 3a5t_A Transcription factor MA 98.8 1.1E-10 3.9E-15 97.3 -3.6 63 253-315 30-92 (107)
11 2wt7_B Transcription factor MA 98.5 4.3E-07 1.5E-11 73.7 9.9 69 254-329 21-89 (90)
12 2oqq_A Transcription factor HY 97.1 0.00094 3.2E-08 46.8 5.6 36 280-315 2-37 (42)
13 1deb_A APC protein, adenomatou 96.8 0.0048 1.6E-07 45.0 7.2 48 283-330 5-52 (54)
14 1skn_P DNA-binding domain of S 96.8 0.00053 1.8E-08 55.4 2.4 32 257-288 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 96.6 0.0076 2.6E-07 47.9 7.6 55 283-339 22-76 (81)
16 3s9g_A Protein hexim1; cyclin 96.3 0.013 4.4E-07 48.2 7.6 49 281-329 37-92 (104)
17 2jee_A YIIU; FTSZ, septum, coi 96.0 0.026 8.8E-07 44.9 7.7 52 279-330 25-76 (81)
18 3hnw_A Uncharacterized protein 95.8 0.037 1.3E-06 47.7 8.8 52 278-329 72-123 (138)
19 2w6a_A ARF GTPase-activating p 95.6 0.046 1.6E-06 41.1 7.4 39 285-323 24-62 (63)
20 2c9l_Y EB1, zebra, BZLF1 trans 95.4 0.073 2.5E-06 39.5 7.8 55 263-338 4-58 (63)
21 1go4_E MAD1 (mitotic arrest de 95.4 0.043 1.5E-06 45.2 7.3 25 306-330 72-96 (100)
22 3vmx_A Voltage-gated hydrogen 95.2 0.078 2.7E-06 38.2 7.0 41 287-327 3-43 (48)
23 3oja_B Anopheles plasmodium-re 95.0 0.22 7.6E-06 50.0 12.8 48 282-329 531-578 (597)
24 3a7p_A Autophagy protein 16; c 95.0 0.27 9.2E-06 43.2 11.5 77 256-332 64-140 (152)
25 3m48_A General control protein 95.0 0.026 8.8E-07 37.7 3.7 27 283-309 2-28 (33)
26 3a2a_A Voltage-gated hydrogen 94.8 0.07 2.4E-06 39.5 6.1 41 287-327 10-50 (58)
27 2oxj_A Hybrid alpha/beta pepti 94.8 0.036 1.2E-06 37.1 4.1 28 282-309 2-29 (34)
28 1ci6_A Transcription factor AT 94.7 0.087 3E-06 39.5 6.6 42 286-327 21-62 (63)
29 3oja_B Anopheles plasmodium-re 94.6 0.16 5.5E-06 51.1 10.6 8 334-341 574-581 (597)
30 1kd8_B GABH BLL, GCN4 acid bas 94.4 0.08 2.7E-06 35.9 5.1 30 282-311 2-31 (36)
31 3hnw_A Uncharacterized protein 94.4 0.25 8.7E-06 42.4 9.7 49 281-329 82-130 (138)
32 3he5_A Synzip1; heterodimeric 94.3 0.18 6.2E-06 35.4 7.1 45 282-326 4-48 (49)
33 3cvf_A Homer-3, homer protein 94.2 0.083 2.8E-06 41.8 5.7 48 282-329 7-54 (79)
34 1uii_A Geminin; human, DNA rep 94.1 0.24 8.2E-06 39.5 8.3 35 294-328 45-79 (83)
35 2wt7_B Transcription factor MA 94.1 0.45 1.6E-05 38.4 10.0 54 273-329 29-82 (90)
36 3c3f_A Alpha/beta peptide with 94.1 0.062 2.1E-06 36.0 4.1 28 282-309 2-29 (34)
37 1kd8_A GABH AIV, GCN4 acid bas 94.1 0.071 2.4E-06 36.1 4.3 31 282-312 2-32 (36)
38 3efg_A Protein SLYX homolog; x 94.0 0.14 4.8E-06 40.1 6.6 50 281-330 14-63 (78)
39 3mq7_A Bone marrow stromal ant 93.7 0.27 9.3E-06 41.5 8.3 42 287-328 70-111 (121)
40 3c3g_A Alpha/beta peptide with 93.7 0.084 2.9E-06 35.1 4.1 27 283-309 2-28 (33)
41 2zxx_A Geminin; coiled-coil, c 93.6 0.18 6E-06 39.9 6.6 34 295-328 34-67 (79)
42 3m91_A Proteasome-associated A 93.6 0.28 9.6E-06 35.7 7.1 37 284-320 12-48 (51)
43 1t2k_D Cyclic-AMP-dependent tr 93.4 0.47 1.6E-05 34.9 8.4 38 288-325 22-59 (61)
44 2bni_A General control protein 93.4 0.091 3.1E-06 35.2 3.9 28 282-309 2-29 (34)
45 2yy0_A C-MYC-binding protein; 93.4 0.13 4.3E-06 37.6 5.1 32 296-327 20-51 (53)
46 1uo4_A General control protein 93.3 0.098 3.3E-06 35.1 3.9 28 282-309 2-29 (34)
47 1hjb_A Ccaat/enhancer binding 93.2 0.61 2.1E-05 37.3 9.3 30 282-311 44-73 (87)
48 3cve_A Homer protein homolog 1 93.2 0.27 9.1E-06 38.2 6.9 46 284-329 3-48 (72)
49 1t6f_A Geminin; coiled-coil, c 93.2 0.14 4.6E-06 34.8 4.5 30 294-323 6-35 (37)
50 3m9b_A Proteasome-associated A 93.1 0.076 2.6E-06 50.1 4.5 41 282-322 55-95 (251)
51 2oqq_A Transcription factor HY 93.0 0.32 1.1E-05 34.1 6.4 36 290-325 5-40 (42)
52 2wt7_A Proto-oncogene protein 93.0 0.9 3.1E-05 33.8 9.4 36 290-325 25-60 (63)
53 3m91_A Proteasome-associated A 93.0 0.39 1.3E-05 34.9 7.1 43 287-329 8-50 (51)
54 1gu4_A CAAT/enhancer binding p 93.0 0.79 2.7E-05 35.9 9.4 27 282-308 44-70 (78)
55 2hy6_A General control protein 92.9 0.12 4.1E-06 34.6 3.9 28 282-309 2-29 (34)
56 2wq1_A General control protein 92.7 0.14 4.9E-06 34.0 4.1 27 283-309 2-28 (33)
57 2v66_B Nuclear distribution pr 92.6 0.24 8.1E-06 41.4 6.3 45 284-328 38-82 (111)
58 4h22_A Leucine-rich repeat fli 92.5 0.5 1.7E-05 39.0 8.0 47 281-327 37-83 (103)
59 2kz5_A Transcription factor NF 92.5 0.0099 3.4E-07 48.0 -2.1 25 257-281 63-87 (91)
60 2wvr_A Geminin; DNA replicatio 92.4 0.35 1.2E-05 44.3 7.6 28 296-323 116-143 (209)
61 2yy0_A C-MYC-binding protein; 92.0 0.28 9.5E-06 35.8 5.3 32 288-319 19-50 (53)
62 2dfs_A Myosin-5A; myosin-V, in 92.0 0.88 3E-05 50.5 11.8 15 314-328 1028-1042(1080)
63 1gd2_E Transcription factor PA 91.8 0.93 3.2E-05 34.8 8.4 28 285-312 40-67 (70)
64 1fmh_A General control protein 91.8 0.21 7.2E-06 32.5 3.9 30 282-311 2-31 (33)
65 1nkp_B MAX protein, MYC proto- 91.6 0.71 2.4E-05 35.7 7.6 34 297-330 49-82 (83)
66 2v71_A Nuclear distribution pr 91.2 0.56 1.9E-05 42.5 7.5 8 333-340 110-117 (189)
67 2xdj_A Uncharacterized protein 91.1 1.9 6.5E-05 34.1 9.7 56 282-337 21-76 (83)
68 2dgc_A Protein (GCN4); basic d 91.1 0.93 3.2E-05 33.9 7.5 36 290-325 25-60 (63)
69 3i00_A HIP-I, huntingtin-inter 91.0 2.4 8.2E-05 35.6 10.9 47 275-321 34-80 (120)
70 3m9b_A Proteasome-associated A 90.8 0.24 8.3E-06 46.6 5.0 56 287-342 53-109 (251)
71 4etp_A Kinesin-like protein KA 90.6 0.79 2.7E-05 45.4 8.7 53 279-331 8-60 (403)
72 3u06_A Protein claret segregat 90.4 0.81 2.8E-05 45.6 8.6 51 280-330 9-59 (412)
73 1am9_A Srebp-1A, protein (ster 90.0 3.2 0.00011 32.2 10.1 66 263-328 5-76 (82)
74 1jnm_A Proto-oncogene C-JUN; B 90.0 2.1 7E-05 31.6 8.5 33 296-328 23-55 (62)
75 3htk_A Structural maintenance 89.8 2.2 7.6E-05 30.8 8.5 48 279-326 10-57 (60)
76 1wt6_A Myotonin-protein kinase 89.7 3.6 0.00012 32.6 10.1 60 268-330 14-73 (81)
77 1wlq_A Geminin; coiled-coil; 2 89.6 1.4 4.9E-05 35.0 7.8 34 295-328 38-71 (83)
78 3nmd_A CGMP dependent protein 89.6 1.5 5.2E-05 34.0 7.7 27 280-306 39-65 (72)
79 3iv1_A Tumor susceptibility ge 89.4 4.6 0.00016 31.7 10.4 53 277-329 21-73 (78)
80 1nkp_A C-MYC, MYC proto-oncoge 89.4 1.8 6.1E-05 34.2 8.3 35 296-330 53-87 (88)
81 2r2v_A GCN4 leucine zipper; co 89.3 0.48 1.7E-05 31.7 4.1 28 282-309 2-29 (34)
82 3q8t_A Beclin-1; autophagy, AT 89.3 1.7 5.8E-05 35.0 8.2 21 283-303 27-47 (96)
83 2v4h_A NF-kappa-B essential mo 89.2 3.6 0.00012 34.3 10.2 62 267-328 31-102 (110)
84 1a93_B MAX protein, coiled coi 89.2 0.63 2.2E-05 31.2 4.6 29 300-328 5-33 (34)
85 2w83_C C-JUN-amino-terminal ki 89.0 0.65 2.2E-05 36.4 5.3 42 285-326 34-75 (77)
86 3efg_A Protein SLYX homolog; x 88.7 1.4 4.7E-05 34.4 7.0 55 284-340 10-64 (78)
87 1dh3_A Transcription factor CR 88.7 1.4 4.8E-05 32.1 6.6 26 304-329 24-49 (55)
88 2dfs_A Myosin-5A; myosin-V, in 88.3 1.7 5.8E-05 48.3 10.0 39 285-323 981-1019(1080)
89 1gmj_A ATPase inhibitor; coile 88.1 3.9 0.00013 32.6 9.3 26 303-328 52-77 (84)
90 3ghg_A Fibrinogen alpha chain; 88.0 1 3.5E-05 46.4 7.4 42 281-322 110-151 (562)
91 3o0z_A RHO-associated protein 88.0 6.6 0.00023 34.9 11.8 57 266-329 75-131 (168)
92 1nkp_B MAX protein, MYC proto- 87.8 0.62 2.1E-05 36.1 4.6 30 281-310 47-76 (83)
93 1ic2_A Tropomyosin alpha chain 87.6 2.9 9.9E-05 32.3 8.3 47 281-327 20-66 (81)
94 2j5u_A MREC protein; bacterial 87.5 0.25 8.5E-06 46.1 2.5 39 286-328 24-62 (255)
95 3u1c_A Tropomyosin alpha-1 cha 87.4 10 0.00034 30.6 12.2 23 277-299 40-62 (101)
96 2eqb_B RAB guanine nucleotide 87.3 2.9 9.9E-05 34.1 8.4 43 286-328 45-95 (97)
97 1nlw_A MAD protein, MAX dimeri 87.2 1.1 3.7E-05 35.0 5.6 27 300-326 52-78 (80)
98 1ic2_A Tropomyosin alpha chain 86.6 9.4 0.00032 29.4 11.7 61 268-328 14-74 (81)
99 4ani_A Protein GRPE; chaperone 86.6 1.3 4.4E-05 40.7 6.6 60 283-342 61-120 (213)
100 2v71_A Nuclear distribution pr 86.5 6.9 0.00024 35.3 11.3 16 313-328 99-114 (189)
101 1jcd_A Major outer membrane li 86.5 3.8 0.00013 29.8 7.8 45 282-326 5-49 (52)
102 1dip_A Delta-sleep-inducing pe 86.5 0.4 1.4E-05 37.5 2.7 43 295-341 15-57 (78)
103 3u1c_A Tropomyosin alpha-1 cha 86.5 11 0.00039 30.2 12.4 44 282-325 24-67 (101)
104 2v66_B Nuclear distribution pr 86.2 9.2 0.00031 31.8 11.0 23 306-328 39-61 (111)
105 3jsv_C NF-kappa-B essential mo 86.2 6.1 0.00021 32.1 9.6 74 265-340 7-83 (94)
106 3s9g_A Protein hexim1; cyclin 86.1 4.3 0.00015 33.3 8.7 27 281-307 65-91 (104)
107 3a7o_A Autophagy protein 16; c 86.0 3.4 0.00011 32.0 7.6 47 283-329 27-73 (75)
108 2xv5_A Lamin-A/C; structural p 86.0 4.2 0.00014 31.4 8.3 47 282-328 6-52 (74)
109 3htk_A Structural maintenance 85.8 4.8 0.00016 28.9 8.2 47 283-329 7-53 (60)
110 4dzn_A Coiled-coil peptide CC- 85.7 1.6 5.6E-05 28.3 4.8 26 297-322 4-29 (33)
111 3o0z_A RHO-associated protein 85.6 4.9 0.00017 35.7 9.6 49 276-326 31-79 (168)
112 3u59_A Tropomyosin beta chain; 85.2 6.5 0.00022 31.5 9.5 18 279-296 42-59 (101)
113 3nmd_A CGMP dependent protein 85.2 1.5 5.1E-05 34.0 5.3 45 285-329 23-67 (72)
114 3mq7_A Bone marrow stromal ant 85.1 4.5 0.00015 34.1 8.6 44 285-328 61-104 (121)
115 4h22_A Leucine-rich repeat fli 85.1 2.6 9.1E-05 34.7 7.1 55 281-335 30-84 (103)
116 4etp_A Kinesin-like protein KA 85.1 1.4 4.9E-05 43.5 6.6 49 279-327 15-63 (403)
117 3he5_B Synzip2; heterodimeric 85.0 3.9 0.00013 29.0 6.9 6 314-319 36-41 (52)
118 2w83_C C-JUN-amino-terminal ki 84.9 4.1 0.00014 31.9 7.7 43 286-328 7-56 (77)
119 3cve_A Homer protein homolog 1 84.4 4 0.00014 31.6 7.4 45 284-328 24-68 (72)
120 3mq9_A Bone marrow stromal ant 84.4 7.5 0.00026 38.0 11.4 25 303-327 444-468 (471)
121 2lw1_A ABC transporter ATP-bin 84.3 6 0.0002 31.0 8.7 26 280-305 21-46 (89)
122 3qne_A Seryl-tRNA synthetase, 84.3 9.5 0.00032 38.9 12.3 52 276-327 42-103 (485)
123 4emc_A Monopolin complex subun 84.2 1.7 6E-05 39.3 6.1 25 292-316 24-48 (190)
124 2xdj_A Uncharacterized protein 84.1 5.6 0.00019 31.4 8.4 38 292-329 24-61 (83)
125 2fxo_A Myosin heavy chain, car 83.9 13 0.00043 31.0 11.0 45 284-328 65-109 (129)
126 4b4t_K 26S protease regulatory 83.8 1.8 6E-05 43.3 6.7 47 284-330 45-91 (428)
127 1nkp_A C-MYC, MYC proto-oncoge 83.7 2.1 7.3E-05 33.8 5.9 33 281-313 52-84 (88)
128 3oja_A Leucine-rich immune mol 83.7 9.7 0.00033 37.3 12.0 29 281-309 435-463 (487)
129 3trt_A Vimentin; cytoskeleton, 83.7 12 0.00041 28.1 11.0 57 263-322 20-76 (77)
130 1gk6_A Vimentin; intermediate 83.6 3 0.0001 30.7 6.2 46 283-328 2-47 (59)
131 3s4r_A Vimentin; alpha-helix, 83.5 14 0.00046 29.5 10.6 31 295-325 56-86 (93)
132 2ve7_C Kinetochore protein NUF 83.5 1.6 5.3E-05 40.8 5.7 59 259-317 119-184 (250)
133 3a7p_A Autophagy protein 16; c 83.3 8.9 0.0003 33.6 10.1 35 282-316 97-131 (152)
134 3cvf_A Homer-3, homer protein 83.3 4.5 0.00015 31.8 7.4 45 284-328 30-74 (79)
135 3ra3_B P2F; coiled coil domain 83.1 0.96 3.3E-05 28.5 2.8 23 292-314 4-26 (28)
136 3na7_A HP0958; flagellar bioge 83.0 12 0.00043 34.2 11.7 18 286-303 95-112 (256)
137 3swy_A Cyclic nucleotide-gated 82.9 5.1 0.00018 28.5 6.9 42 285-329 2-43 (46)
138 2wuj_A Septum site-determining 82.9 1.2 4E-05 32.7 3.7 29 281-309 27-55 (57)
139 1wt6_A Myotonin-protein kinase 82.7 6 0.00021 31.3 7.9 41 277-317 34-74 (81)
140 1gmj_A ATPase inhibitor; coile 82.4 9.2 0.00032 30.4 9.0 27 295-321 51-77 (84)
141 1lwu_C Fibrinogen gamma chain; 82.3 2.9 0.0001 40.5 7.3 48 281-328 12-59 (323)
142 1x8y_A Lamin A/C; structural p 82.3 15 0.0005 28.8 10.2 51 279-329 26-76 (86)
143 1g6u_A Domain swapped dimer; d 81.9 5.8 0.0002 27.7 6.6 27 303-329 21-47 (48)
144 3q8t_A Beclin-1; autophagy, AT 81.7 18 0.00063 28.9 12.3 65 264-328 29-93 (96)
145 1joc_A EEA1, early endosomal a 81.7 9.4 0.00032 31.8 9.4 48 281-328 11-58 (125)
146 1gk4_A Vimentin; intermediate 81.7 16 0.00056 28.3 11.4 53 277-329 22-74 (84)
147 1wle_A Seryl-tRNA synthetase; 81.4 10 0.00036 38.6 11.4 29 299-327 120-148 (501)
148 2fxo_A Myosin heavy chain, car 81.1 16 0.00056 30.3 10.7 45 284-328 79-123 (129)
149 3u59_A Tropomyosin beta chain; 81.0 19 0.00066 28.7 12.2 46 281-326 23-68 (101)
150 2dq0_A Seryl-tRNA synthetase; 81.0 6.9 0.00023 39.3 9.8 28 300-327 74-101 (455)
151 3bas_A Myosin heavy chain, str 80.7 19 0.00064 28.3 12.2 52 278-329 32-83 (89)
152 3tnu_A Keratin, type I cytoske 80.6 23 0.00077 29.5 11.4 48 281-328 77-124 (131)
153 3na7_A HP0958; flagellar bioge 80.6 14 0.00049 33.8 11.1 47 281-327 32-78 (256)
154 1nlw_A MAD protein, MAX dimeri 80.2 3.9 0.00013 31.8 6.1 35 280-314 46-80 (80)
155 1go4_E MAD1 (mitotic arrest de 80.1 3.5 0.00012 33.8 6.0 30 282-311 13-42 (100)
156 2ve7_C Kinetochore protein NUF 80.0 0.83 2.8E-05 42.6 2.5 34 291-324 144-177 (250)
157 3tnu_B Keratin, type II cytosk 79.8 25 0.00084 29.1 11.4 47 282-328 76-122 (129)
158 1jcd_A Major outer membrane li 79.6 7.2 0.00024 28.3 6.9 41 288-328 4-44 (52)
159 3i00_A HIP-I, huntingtin-inter 79.5 12 0.00042 31.3 9.3 47 283-329 35-81 (120)
160 2v4h_A NF-kappa-B essential mo 79.4 25 0.00087 29.2 11.0 48 281-328 62-109 (110)
161 1wlq_A Geminin; coiled-coil; 2 79.1 11 0.00038 29.9 8.4 43 283-329 40-82 (83)
162 4ati_A MITF, microphthalmia-as 79.0 5.8 0.0002 32.9 7.1 70 260-329 23-111 (118)
163 1am9_A Srebp-1A, protein (ster 78.9 2.9 0.0001 32.4 5.0 28 280-307 49-76 (82)
164 3ghg_A Fibrinogen alpha chain; 78.7 4.3 0.00015 42.0 7.4 31 299-329 114-144 (562)
165 3swf_A CGMP-gated cation chann 78.6 5 0.00017 31.2 6.1 43 284-329 3-45 (74)
166 3bbp_D GRIP and coiled-coil do 78.5 1.6 5.4E-05 33.7 3.2 46 284-329 18-63 (71)
167 2xzr_A Immunoglobulin-binding 77.9 27 0.00094 28.6 10.9 61 263-323 34-104 (114)
168 2oxj_A Hybrid alpha/beta pepti 77.8 4.6 0.00016 27.0 4.8 27 299-325 5-31 (34)
169 3lss_A Seryl-tRNA synthetase; 77.5 24 0.00082 35.9 12.5 20 279-298 49-68 (484)
170 3trt_A Vimentin; cytoskeleton, 77.3 18 0.00061 27.2 9.0 44 287-330 34-77 (77)
171 1fmh_B General control protein 77.2 4.2 0.00014 26.4 4.4 30 282-311 2-31 (33)
172 1ses_A Seryl-tRNA synthetase; 77.1 25 0.00086 34.8 12.4 31 298-328 67-97 (421)
173 3u06_A Protein claret segregat 77.0 4.3 0.00015 40.3 6.8 46 281-326 17-62 (412)
174 3ol1_A Vimentin; structural ge 76.4 12 0.0004 31.0 8.3 49 291-339 65-115 (119)
175 2ve7_A Kinetochore protein HEC 76.2 3.4 0.00012 39.6 5.6 29 289-317 186-214 (315)
176 1wle_A Seryl-tRNA synthetase; 76.2 21 0.00073 36.3 11.8 63 279-343 82-155 (501)
177 3mq9_A Bone marrow stromal ant 75.2 32 0.0011 33.4 12.5 30 300-329 434-463 (471)
178 1a93_B MAX protein, coiled coi 75.2 4.4 0.00015 27.2 4.2 24 296-319 8-31 (34)
179 1uix_A RHO-associated kinase; 75.1 8.1 0.00028 29.8 6.4 30 286-315 2-31 (71)
180 3mov_A Lamin-B1; LMNB1, B-type 75.0 24 0.00082 28.3 9.5 48 281-328 37-84 (95)
181 3he5_B Synzip2; heterodimeric 74.9 10 0.00035 26.8 6.3 24 286-309 22-45 (52)
182 1kd8_B GABH BLL, GCN4 acid bas 74.6 7 0.00024 26.4 5.1 28 299-326 5-32 (36)
183 1m1j_C Fibrinogen gamma chain; 74.6 1.5 5E-05 43.9 2.7 40 284-323 94-133 (409)
184 1ik9_A DNA repair protein XRCC 74.0 8.4 0.00029 35.1 7.4 19 286-304 144-162 (213)
185 1fzc_C Fibrin; blood coagulati 74.0 1.2 4.1E-05 43.2 1.9 48 281-328 4-51 (319)
186 3qh9_A Liprin-beta-2; coiled-c 74.0 17 0.00059 28.6 8.1 37 280-316 25-61 (81)
187 3lay_A Zinc resistance-associa 73.9 23 0.00077 31.4 10.0 20 303-322 114-133 (175)
188 3a2a_A Voltage-gated hydrogen 73.7 9.6 0.00033 28.2 6.1 26 283-308 20-45 (58)
189 1s1c_X RHO-associated, coiled- 73.4 10 0.00035 29.3 6.5 43 285-327 3-46 (71)
190 1p9i_A Cortexillin I/GCN4 hybr 73.4 4.8 0.00016 25.8 3.9 22 286-307 4-25 (31)
191 3s4r_A Vimentin; alpha-helix, 73.2 33 0.0011 27.2 10.1 33 281-313 56-88 (93)
192 2eqb_B RAB guanine nucleotide 73.1 36 0.0012 27.6 12.2 47 282-328 13-59 (97)
193 4b4t_K 26S protease regulatory 72.5 6.4 0.00022 39.2 6.7 43 281-323 49-91 (428)
194 3ra3_A P1C; coiled coil domain 72.4 2.5 8.5E-05 26.6 2.3 24 292-315 4-27 (28)
195 3oa7_A Head morphogenesis prot 72.2 13 0.00043 34.0 7.9 43 290-332 32-74 (206)
196 2xv5_A Lamin-A/C; structural p 72.2 24 0.00081 27.1 8.5 53 274-326 5-57 (74)
197 3ol1_A Vimentin; structural ge 71.8 41 0.0014 27.7 12.2 40 297-338 64-103 (119)
198 4e61_A Protein BIM1; EB1-like 71.8 16 0.00054 30.2 7.8 30 281-310 11-40 (106)
199 3a5t_A Transcription factor MA 71.6 0.57 1.9E-05 38.9 -0.9 33 296-328 59-91 (107)
200 1zxa_A CGMP-dependent protein 71.4 5.8 0.0002 30.3 4.8 35 277-311 21-55 (67)
201 3w03_C DNA repair protein XRCC 71.3 7.6 0.00026 34.9 6.3 31 282-312 146-176 (184)
202 3iv1_A Tumor susceptibility ge 71.1 31 0.0011 27.0 9.0 50 280-329 17-66 (78)
203 1deq_A Fibrinogen (alpha chain 71.0 9.5 0.00033 37.9 7.4 45 281-325 113-157 (390)
204 2oa5_A Hypothetical protein BQ 70.7 2.3 7.8E-05 35.5 2.5 26 281-306 8-33 (110)
205 4emc_A Monopolin complex subun 70.7 13 0.00046 33.5 7.7 31 282-312 28-58 (190)
206 2oto_A M protein; helical coil 70.6 18 0.0006 30.9 8.3 32 283-314 52-83 (155)
207 1hlo_A Protein (transcription 70.3 9.8 0.00033 29.1 6.0 23 270-292 18-40 (80)
208 3tnu_B Keratin, type II cytosk 70.2 6.4 0.00022 32.8 5.3 17 311-327 84-100 (129)
209 1lwu_C Fibrinogen gamma chain; 70.2 10 0.00034 36.8 7.3 28 282-309 27-54 (323)
210 3c3g_A Alpha/beta peptide with 70.1 9.4 0.00032 25.4 4.8 27 299-325 4-30 (33)
211 2zqm_A Prefoldin beta subunit 69.8 16 0.00054 29.0 7.4 41 290-330 72-112 (117)
212 4ath_A MITF, microphthalmia-as 69.7 8 0.00027 30.7 5.3 22 286-307 54-75 (83)
213 3viq_B Mating-type switching p 69.6 28 0.00096 27.7 8.5 51 280-330 7-69 (85)
214 3m48_A General control protein 68.9 7.3 0.00025 25.9 4.1 24 300-323 5-28 (33)
215 1kd8_A GABH AIV, GCN4 acid bas 68.8 11 0.00039 25.4 5.1 28 299-326 5-32 (36)
216 3vkg_A Dynein heavy chain, cyt 68.8 20 0.00068 44.4 10.9 34 293-326 2033-2066(3245)
217 1dip_A Delta-sleep-inducing pe 68.5 3.6 0.00012 32.2 3.0 23 284-306 18-40 (78)
218 3w03_C DNA repair protein XRCC 68.5 13 0.00044 33.4 7.1 31 281-311 152-182 (184)
219 2lz1_A Nuclear factor erythroi 68.2 0.088 3E-06 42.5 -6.3 23 258-280 64-86 (90)
220 1gk7_A Vimentin; intermediate 68.2 11 0.00036 25.8 5.1 26 302-327 13-38 (39)
221 1p9i_A Cortexillin I/GCN4 hybr 68.2 4.9 0.00017 25.8 3.1 22 308-329 5-26 (31)
222 1zme_C Proline utilization tra 68.0 5.2 0.00018 28.9 3.8 24 281-304 44-67 (70)
223 2zxx_A Geminin; coiled-coil, c 67.7 32 0.0011 27.0 8.4 41 284-328 37-77 (79)
224 3bas_A Myosin heavy chain, str 67.7 32 0.0011 26.9 8.6 42 284-325 45-86 (89)
225 1ses_A Seryl-tRNA synthetase; 67.3 39 0.0013 33.4 11.1 37 305-343 67-103 (421)
226 4b4t_M 26S protease regulatory 67.2 5.4 0.00018 39.9 4.9 46 285-330 29-74 (434)
227 3c3f_A Alpha/beta peptide with 67.1 12 0.0004 25.0 4.8 27 299-325 5-31 (34)
228 2ocy_A RAB guanine nucleotide 67.0 48 0.0016 28.9 10.3 36 306-341 105-145 (154)
229 3uux_B Mitochondrial division 66.9 21 0.00071 33.4 8.4 51 280-330 176-226 (242)
230 3mud_A DNA repair protein XRCC 66.7 19 0.00065 32.2 7.8 34 286-319 133-166 (175)
231 2wvr_A Geminin; DNA replicatio 66.7 43 0.0015 30.6 10.2 46 281-330 115-160 (209)
232 3qne_A Seryl-tRNA synthetase, 66.5 30 0.001 35.2 10.3 19 286-304 45-63 (485)
233 3hhm_B NISH2 P85alpha; PI3KCA, 66.4 20 0.00068 35.2 8.7 52 278-329 202-253 (373)
234 1fxk_C Protein (prefoldin); ar 66.2 25 0.00086 28.8 8.1 31 284-314 98-128 (133)
235 2akf_A Coronin-1A; coiled coil 66.1 14 0.00049 24.0 5.0 27 285-311 3-29 (32)
236 3qh9_A Liprin-beta-2; coiled-c 65.8 21 0.00072 28.2 7.0 26 290-315 21-46 (81)
237 2fic_A Bridging integrator 1; 65.6 25 0.00084 31.5 8.6 11 318-328 199-209 (251)
238 3okq_A BUD site selection prot 65.4 58 0.002 28.1 10.3 59 268-326 8-78 (141)
239 2wuj_A Septum site-determining 65.4 6.2 0.00021 28.7 3.7 25 305-329 30-54 (57)
240 2b9c_A Striated-muscle alpha t 65.0 66 0.0023 27.5 11.4 70 260-329 37-121 (147)
241 2dq0_A Seryl-tRNA synthetase; 64.8 33 0.0011 34.4 10.1 62 280-343 44-108 (455)
242 2b5u_A Colicin E3; high resolu 64.6 57 0.002 33.6 11.7 25 270-294 317-341 (551)
243 2wq1_A General control protein 64.1 15 0.0005 24.4 4.8 27 299-325 4-30 (33)
244 1lq7_A Alpha3W; three helix bu 64.0 17 0.00058 26.9 5.8 14 314-327 53-66 (67)
245 2ke4_A CDC42-interacting prote 64.0 34 0.0012 27.5 8.2 30 300-329 60-89 (98)
246 1j1d_B Troponin T, TNT; THIN f 63.5 46 0.0016 27.3 9.0 38 291-328 45-82 (106)
247 2zvf_A Alanyl-tRNA synthetase; 63.2 13 0.00044 31.5 5.9 30 285-314 29-58 (171)
248 3q0x_A Centriole protein; cent 63.1 22 0.00075 32.9 7.8 44 281-324 178-221 (228)
249 1x4t_A Hypothetical protein LO 62.9 22 0.00075 28.7 6.7 53 282-335 33-85 (92)
250 1uii_A Geminin; human, DNA rep 62.7 25 0.00084 27.9 6.9 29 281-309 46-74 (83)
251 1uo4_A General control protein 62.5 12 0.00043 24.9 4.3 25 300-324 6-30 (34)
252 3m0d_C TNF receptor-associated 62.2 45 0.0015 24.6 8.7 48 281-328 6-53 (65)
253 3ghg_C Fibrinogen gamma chain; 62.1 6.8 0.00023 39.2 4.5 58 270-327 80-137 (411)
254 3q0x_A Centriole protein; cent 62.0 20 0.00067 33.2 7.2 43 284-326 174-216 (228)
255 1l8d_A DNA double-strand break 61.9 27 0.00093 27.6 7.3 31 296-326 72-102 (112)
256 2xu6_A MDV1 coiled coil; prote 61.8 20 0.0007 27.7 6.1 49 281-329 21-69 (72)
257 2bni_A General control protein 61.7 12 0.0004 25.1 4.1 27 299-325 5-31 (34)
258 2ocy_A RAB guanine nucleotide 61.6 55 0.0019 28.5 9.6 36 293-328 113-148 (154)
259 2dq3_A Seryl-tRNA synthetase; 61.4 7.1 0.00024 38.7 4.5 29 300-328 73-101 (425)
260 3e98_A GAF domain of unknown f 60.8 16 0.00056 33.7 6.6 27 284-310 82-111 (252)
261 3he4_A Synzip6; heterodimeric 60.7 10 0.00036 27.1 4.0 35 283-317 19-53 (56)
262 1joc_A EEA1, early endosomal a 60.1 30 0.001 28.6 7.5 34 282-315 19-52 (125)
263 3sja_C Golgi to ER traffic pro 60.1 40 0.0014 25.5 7.4 23 305-327 35-57 (65)
264 1fxk_A Prefoldin; archaeal pro 59.8 22 0.00076 27.7 6.4 35 293-327 70-104 (107)
265 2z5i_A TM, general control pro 59.3 17 0.00058 26.1 5.0 31 284-314 8-38 (52)
266 2yko_A LINE-1 ORF1P; RNA-bindi 58.9 14 0.00047 34.4 5.6 42 283-324 8-49 (233)
267 2hy6_A General control protein 58.8 22 0.00074 23.7 5.0 27 299-325 5-31 (34)
268 3k29_A Putative uncharacterize 58.7 98 0.0034 27.4 12.4 13 262-274 35-47 (169)
269 2q6q_A Spindle POLE BODY compo 58.5 60 0.0021 24.9 8.3 40 290-329 19-58 (74)
270 2b5u_A Colicin E3; high resolu 58.2 41 0.0014 34.6 9.3 30 283-312 316-345 (551)
271 2j5u_A MREC protein; bacterial 57.6 4.5 0.00015 37.5 2.2 23 290-312 21-43 (255)
272 3tnu_A Keratin, type I cytoske 57.5 75 0.0026 26.2 9.6 18 303-320 85-102 (131)
273 2odv_A Plectin 1, HD1; plakin 56.7 94 0.0032 28.3 10.9 40 256-295 99-138 (235)
274 2r2v_A GCN4 leucine zipper; co 56.7 24 0.00082 23.6 4.9 28 299-326 5-32 (34)
275 4dk0_A Putative MACA; alpha-ha 56.5 58 0.002 30.2 9.7 25 303-327 123-147 (369)
276 1fmh_A General control protein 56.5 13 0.00045 24.1 3.5 23 306-328 5-27 (33)
277 3mtu_A Tropomyosin alpha-1 cha 56.4 20 0.00068 27.5 5.3 46 282-327 17-62 (75)
278 2i1j_A Moesin; FERM, coiled-co 56.3 8.8 0.0003 39.6 4.3 42 283-324 337-378 (575)
279 2l5g_B Putative uncharacterize 56.2 25 0.00085 24.6 5.2 31 285-315 6-36 (42)
280 1m1j_A Fibrinogen alpha subuni 56.1 71 0.0024 32.6 10.6 46 280-325 110-155 (491)
281 2zvf_A Alanyl-tRNA synthetase; 56.1 14 0.00046 31.4 4.8 30 299-328 29-58 (171)
282 1ytz_T Troponin T; muscle, THI 56.0 83 0.0028 25.7 11.4 38 291-328 45-89 (107)
283 2zqm_A Prefoldin beta subunit 55.8 73 0.0025 25.0 12.5 40 297-338 72-111 (117)
284 3viq_B Mating-type switching p 55.6 15 0.00052 29.2 4.6 25 284-308 4-28 (85)
285 2oto_A M protein; helical coil 55.3 51 0.0018 27.9 8.4 24 284-307 60-83 (155)
286 3vmx_A Voltage-gated hydrogen 55.2 55 0.0019 23.4 7.2 29 281-309 11-39 (48)
287 3q4f_C DNA repair protein XRCC 55.1 22 0.00074 32.0 6.0 21 289-309 162-182 (186)
288 2q6q_A Spindle POLE BODY compo 55.0 63 0.0022 24.8 7.7 44 285-328 7-50 (74)
289 1m1j_C Fibrinogen gamma chain; 54.5 31 0.0011 34.4 7.7 49 282-330 85-133 (409)
290 1fxk_C Protein (prefoldin); ar 54.2 41 0.0014 27.5 7.3 39 284-322 91-129 (133)
291 3sjb_C Golgi to ER traffic pro 54.2 45 0.0015 26.9 7.2 15 300-314 54-68 (93)
292 1m1j_B Fibrinogen beta chain; 54.0 1.3E+02 0.0045 30.4 12.3 15 258-272 104-118 (464)
293 2l5g_B Putative uncharacterize 53.8 27 0.00091 24.4 5.0 31 299-329 6-36 (42)
294 3tq2_A KE1; parallel three hel 53.3 38 0.0013 22.3 5.4 31 298-328 4-34 (36)
295 1t3j_A Mitofusin 1; coiled coi 53.0 45 0.0015 27.0 7.1 41 284-328 50-90 (96)
296 2no2_A HIP-I, huntingtin-inter 52.8 92 0.0031 25.3 11.6 40 290-329 56-95 (107)
297 2lw1_A ABC transporter ATP-bin 52.7 52 0.0018 25.5 7.3 48 281-328 29-82 (89)
298 1ik9_A DNA repair protein XRCC 52.6 51 0.0017 29.9 8.3 29 286-314 137-165 (213)
299 2oa5_A Hypothetical protein BQ 52.4 7.8 0.00027 32.3 2.5 24 304-327 10-33 (110)
300 2z5i_A TM, general control pro 52.0 52 0.0018 23.5 6.6 39 288-326 5-43 (52)
301 2er8_A Regulatory protein Leu3 51.6 7.9 0.00027 28.3 2.3 22 280-301 48-69 (72)
302 3vp9_A General transcriptional 51.4 64 0.0022 25.9 7.7 46 284-329 39-88 (92)
303 3lss_A Seryl-tRNA synthetase; 50.7 1E+02 0.0035 31.3 10.9 28 301-328 109-137 (484)
304 3a7o_A Autophagy protein 16; c 50.6 45 0.0015 25.8 6.3 40 281-320 32-71 (75)
305 1ytz_T Troponin T; muscle, THI 50.6 43 0.0015 27.5 6.7 42 280-321 48-89 (107)
306 3k66_A Beta-amyloid-like prote 50.6 90 0.0031 29.1 9.6 56 280-335 37-97 (239)
307 2no2_A HIP-I, huntingtin-inter 50.6 1E+02 0.0034 25.1 12.2 53 277-329 50-102 (107)
308 1hlo_A Protein (transcription 50.5 13 0.00045 28.3 3.4 15 307-321 62-76 (80)
309 1gk6_A Vimentin; intermediate 50.4 69 0.0024 23.2 8.1 47 280-326 6-52 (59)
310 2aze_A Transcription factor DP 50.1 41 0.0014 29.5 6.9 14 277-290 22-35 (155)
311 4ath_A MITF, microphthalmia-as 49.6 36 0.0012 26.9 5.9 33 293-329 44-76 (83)
312 4a3a_A Amphiphysin; structural 49.6 63 0.0022 29.4 8.5 18 277-294 140-157 (243)
313 4gkw_A Spindle assembly abnorm 48.7 1.3E+02 0.0045 25.9 12.1 23 309-331 140-162 (167)
314 2efr_A General control protein 48.7 1.3E+02 0.0046 26.0 12.4 35 286-320 96-130 (155)
315 2zdi_C Prefoldin subunit alpha 48.3 37 0.0013 28.5 6.3 37 286-322 103-139 (151)
316 3iox_A AGI/II, PA; alpha helix 48.2 51 0.0018 33.7 8.2 30 283-312 36-65 (497)
317 3qwe_A GMIP, GEM-interacting p 48.2 1.8E+02 0.0062 27.4 12.0 69 269-338 132-219 (279)
318 1d7m_A Cortexillin I; coiled-c 48.2 61 0.0021 26.2 7.0 31 283-313 27-57 (101)
319 2wg5_A General control protein 48.1 16 0.00053 29.8 3.7 39 305-343 10-49 (109)
320 3rrk_A V-type ATPase 116 kDa s 48.0 37 0.0013 31.9 6.9 34 284-317 95-128 (357)
321 2xus_A Breast cancer metastasi 47.9 44 0.0015 24.0 5.5 24 277-304 6-29 (49)
322 2ve7_A Kinetochore protein HEC 47.9 34 0.0012 32.6 6.6 33 280-312 184-216 (315)
323 3fpp_A Macrolide-specific effl 47.8 1.2E+02 0.0039 27.9 10.1 26 303-328 122-147 (341)
324 1l8d_A DNA double-strand break 47.7 1E+02 0.0034 24.2 11.3 51 279-329 29-98 (112)
325 3plt_A Sphingolipid long chain 47.4 79 0.0027 29.3 8.8 47 264-310 97-160 (234)
326 2yko_A LINE-1 ORF1P; RNA-bindi 47.3 39 0.0013 31.4 6.7 56 283-338 1-56 (233)
327 1lwu_B Fibrinogen beta chain; 47.2 22 0.00074 34.3 5.2 26 300-325 33-58 (323)
328 1lrz_A FEMA, factor essential 47.1 57 0.0019 31.6 8.2 21 281-301 247-267 (426)
329 2ke4_A CDC42-interacting prote 47.0 87 0.003 25.1 8.0 20 310-329 63-82 (98)
330 2xnx_M M protein, M1-BC1; cell 47.0 1.4E+02 0.0049 25.8 10.4 36 300-335 78-113 (146)
331 4ani_A Protein GRPE; chaperone 46.9 41 0.0014 30.7 6.7 26 281-306 73-98 (213)
332 3ni0_A Bone marrow stromal ant 46.9 1.2E+02 0.0039 24.7 8.9 25 308-332 66-90 (99)
333 1t6f_A Geminin; coiled-coil, c 46.8 34 0.0012 23.1 4.5 24 284-307 10-33 (37)
334 4b4t_J 26S protease regulatory 46.7 21 0.00072 35.4 5.1 54 282-342 26-80 (405)
335 2w6b_A RHO guanine nucleotide 46.5 67 0.0023 23.6 6.4 23 285-307 14-36 (56)
336 2yo3_A General control protein 46.3 55 0.0019 31.0 7.6 53 274-326 209-261 (268)
337 3gp4_A Transcriptional regulat 46.2 75 0.0026 26.5 7.8 27 286-312 86-112 (142)
338 3ljm_A Coil Ser L9C; de novo d 45.8 37 0.0013 21.7 4.3 24 284-307 4-27 (31)
339 4b4t_L 26S protease subunit RP 45.7 21 0.00071 35.7 4.9 27 303-329 73-99 (437)
340 1ykh_B RNA polymerase II holoe 45.3 44 0.0015 28.1 6.2 33 288-327 92-124 (132)
341 1yke_B RNA polymerase II holoe 45.2 42 0.0014 28.9 6.2 27 288-314 92-118 (151)
342 3ra3_A P1C; coiled coil domain 45.2 11 0.00037 23.7 1.7 14 292-305 11-24 (28)
343 3onj_A T-snare VTI1; helix, HA 45.1 1E+02 0.0034 24.3 8.0 24 306-329 69-93 (97)
344 2e7s_A RAB guanine nucleotide 45.1 47 0.0016 28.5 6.3 21 309-329 96-116 (135)
345 3rrk_A V-type ATPase 116 kDa s 44.6 71 0.0024 30.0 8.3 28 283-310 228-255 (357)
346 3he4_A Synzip6; heterodimeric 44.4 8.5 0.00029 27.6 1.3 34 295-328 17-50 (56)
347 3n7n_E Monopolin complex subun 44.4 4.7 0.00016 32.7 0.0 34 291-324 39-72 (95)
348 2w6a_A ARF GTPase-activating p 44.2 98 0.0034 23.1 8.4 22 293-314 39-60 (63)
349 3sjb_C Golgi to ER traffic pro 44.1 69 0.0024 25.8 6.8 20 306-325 53-72 (93)
350 2wg5_A General control protein 44.0 20 0.00067 29.1 3.7 16 292-307 11-26 (109)
351 1j1d_C Troponin I, TNI; THIN f 43.9 56 0.0019 27.8 6.6 40 291-330 61-107 (133)
352 2gkw_A TNF receptor-associated 43.8 36 0.0012 29.5 5.7 34 283-316 2-35 (192)
353 2c9l_Y EB1, zebra, BZLF1 trans 43.4 96 0.0033 22.8 8.7 43 258-304 3-45 (63)
354 1a93_A Coiled coil, LZ, MYC pr 43.4 43 0.0015 22.3 4.6 28 301-328 6-33 (34)
355 2dq3_A Seryl-tRNA synthetase; 43.2 37 0.0013 33.6 6.3 35 307-343 73-107 (425)
356 2p22_A Suppressor protein STP2 43.2 41 0.0014 29.8 5.9 31 293-323 54-84 (174)
357 1hs7_A Syntaxin VAM3; UP-and-D 43.2 36 0.0012 27.5 5.1 44 284-327 36-82 (97)
358 1tu3_F RAB GTPase binding effe 42.7 41 0.0014 26.3 5.1 22 320-341 44-65 (79)
359 4b4t_J 26S protease regulatory 42.7 39 0.0013 33.5 6.3 25 287-311 38-62 (405)
360 3m0a_A TNF receptor-associated 42.6 94 0.0032 22.5 8.1 35 284-318 8-42 (66)
361 3lay_A Zinc resistance-associa 42.3 94 0.0032 27.4 8.1 18 296-313 114-131 (175)
362 1f5n_A Interferon-induced guan 42.1 1.9E+02 0.0065 29.9 11.6 9 320-328 571-579 (592)
363 2lf0_A Uncharacterized protein 42.1 39 0.0014 28.5 5.3 17 291-307 39-55 (123)
364 4fla_A Regulation of nuclear P 42.0 90 0.0031 26.9 7.8 11 281-291 86-96 (152)
365 2aze_B Transcription factor E2 41.9 43 0.0015 27.2 5.4 29 287-315 12-40 (106)
366 3l4q_C Phosphatidylinositol 3- 41.5 88 0.003 27.6 7.8 45 284-328 113-157 (170)
367 3gp4_A Transcriptional regulat 40.7 1.6E+02 0.0053 24.5 9.4 28 289-316 82-109 (142)
368 1vcs_A Vesicle transport throu 40.3 1.4E+02 0.0047 23.7 8.2 50 280-329 37-94 (102)
369 4b4t_L 26S protease subunit RP 40.0 29 0.00098 34.6 4.9 29 294-322 71-99 (437)
370 2j69_A Bacterial dynamin-like 39.5 86 0.0029 32.7 8.6 41 287-327 351-391 (695)
371 3jsv_C NF-kappa-B essential mo 38.8 1.5E+02 0.0052 23.8 8.7 48 281-328 40-87 (94)
372 4dk0_A Putative MACA; alpha-ha 38.5 71 0.0024 29.6 7.2 36 292-327 119-154 (369)
373 1tu3_F RAB GTPase binding effe 38.5 78 0.0027 24.7 6.0 59 282-340 13-76 (79)
374 3sja_C Golgi to ER traffic pro 38.3 76 0.0026 24.0 5.9 11 300-310 37-47 (65)
375 2p22_A Suppressor protein STP2 38.2 83 0.0028 27.9 7.1 42 284-325 52-93 (174)
376 2zdi_C Prefoldin subunit alpha 37.9 81 0.0028 26.4 6.8 33 284-316 108-140 (151)
377 2xnx_M M protein, M1-BC1; cell 37.9 2E+02 0.0068 24.9 9.4 32 298-329 69-100 (146)
378 3mud_A DNA repair protein XRCC 37.7 54 0.0019 29.2 5.8 27 278-304 139-165 (175)
379 2l5g_A GPS2 protein, G protein 37.7 52 0.0018 22.4 4.3 15 298-312 18-32 (38)
380 3iyn_Q Protein IX, PIX, hexon- 37.6 21 0.00071 30.5 2.9 8 198-205 33-40 (140)
381 3q4f_C DNA repair protein XRCC 37.4 54 0.0018 29.5 5.7 25 280-304 160-184 (186)
382 3fx0_A NF-kappa-B essential mo 37.1 22 0.00074 28.9 2.8 48 277-324 34-84 (96)
383 2k48_A Nucleoprotein; viral pr 37.0 1.7E+02 0.006 24.0 8.3 19 296-314 83-101 (107)
384 1zhc_A Hypothetical protein HP 36.8 32 0.0011 26.3 3.7 43 284-327 27-69 (76)
385 3zwh_Q Myosin-9; Ca-binding pr 36.7 13 0.00046 26.2 1.4 24 303-326 7-30 (45)
386 2pnv_A Small conductance calci 36.4 46 0.0016 23.2 4.0 8 299-306 20-27 (43)
387 4dzo_A Mitotic spindle assembl 36.1 87 0.003 26.0 6.6 26 281-306 4-29 (123)
388 3tq7_B Microtubule-associated 36.1 66 0.0023 25.2 5.4 47 281-327 8-54 (82)
389 4h10_A ARYL hydrocarbon recept 36.0 78 0.0027 24.0 5.7 34 260-293 5-38 (73)
390 3azd_A Short alpha-tropomyosin 35.9 10 0.00034 25.5 0.6 21 285-305 8-28 (37)
391 3u0c_A Invasin IPAB, 62 kDa an 35.9 2.4E+02 0.0082 25.2 10.2 73 259-331 70-146 (201)
392 2lq4_p Lysophosphatidic acid r 35.6 7.7 0.00026 29.6 -0.0 28 299-326 52-79 (80)
393 1j1d_C Troponin I, TNI; THIN f 35.5 1.4E+02 0.0049 25.3 7.9 46 280-325 64-109 (133)
394 3vlc_E Golgi to ER traffic pro 35.4 41 0.0014 27.2 4.2 15 309-323 63-77 (94)
395 4fm3_A Uncharacterized hypothe 35.2 1.2E+02 0.0042 24.5 7.1 39 280-318 56-94 (98)
396 3vem_A Helicase protein MOM1; 34.9 2E+02 0.0068 24.0 11.3 31 275-305 55-85 (115)
397 1cii_A Colicin IA; bacteriocin 34.9 2.7E+02 0.0092 28.7 10.9 45 265-311 342-386 (602)
398 3pik_A Cation efflux system pr 34.8 2.8E+02 0.0096 25.7 11.8 32 276-307 346-377 (446)
399 3p7i_A PHND, subunit of alkylp 34.7 39 0.0013 31.5 4.7 49 253-301 263-311 (321)
400 2djv_A Methionyl-tRNA syntheta 34.4 90 0.0031 24.0 6.0 21 312-332 43-63 (79)
401 1j1e_C Troponin I, TNI; THIN f 34.4 88 0.003 27.9 6.6 15 316-330 93-107 (180)
402 3he4_B Synzip5; heterodimeric 34.0 1.1E+02 0.0039 21.0 6.6 14 287-300 9-22 (46)
403 3l4f_A RHO guanine nucleotide 33.6 1.5E+02 0.0051 22.2 7.5 43 286-328 5-47 (61)
404 1qvr_A CLPB protein; coiled co 32.8 1.7E+02 0.0057 31.0 9.6 18 280-297 400-417 (854)
405 1rtm_1 Mannose-binding protein 32.6 50 0.0017 26.7 4.5 15 284-298 7-21 (149)
406 1zxa_A CGMP-dependent protein 32.3 65 0.0022 24.4 4.7 15 314-328 37-51 (67)
407 3aon_A V-type sodium ATPase su 32.0 1.7E+02 0.0059 26.1 8.4 56 282-337 32-87 (217)
408 3gwk_C SAG1039, putative uncha 31.9 99 0.0034 23.2 5.9 25 303-327 56-80 (98)
409 3aon_A V-type sodium ATPase su 31.8 2.2E+02 0.0076 25.4 9.0 33 284-316 41-73 (217)
410 1hwt_C Protein (heme activator 31.7 25 0.00087 25.9 2.3 23 279-301 56-78 (81)
411 2js5_A Uncharacterized protein 31.7 1.7E+02 0.0059 22.4 7.8 27 303-329 39-65 (71)
412 1fxk_A Prefoldin; archaeal pro 31.4 1.8E+02 0.0061 22.4 12.0 33 297-329 67-99 (107)
413 1lwu_A Fibrinogen alpha-1 chai 31.3 95 0.0032 26.0 5.9 40 283-322 24-63 (119)
414 1zhc_A Hypothetical protein HP 31.2 69 0.0024 24.4 4.8 48 281-329 17-64 (76)
415 4g2k_A General control protein 31.2 1.4E+02 0.0048 25.2 6.9 6 287-292 20-25 (125)
416 1m1j_A Fibrinogen alpha subuni 30.9 2.8E+02 0.0095 28.3 10.2 18 254-271 58-75 (491)
417 3ljc_A ATP-dependent protease 30.8 2E+02 0.007 25.6 8.7 27 300-327 224-250 (252)
418 1j1d_B Troponin T, TNT; THIN f 30.8 2.2E+02 0.0074 23.2 9.4 41 281-328 49-89 (106)
419 4dci_A Uncharacterized protein 30.6 2.2E+02 0.0076 24.5 8.4 18 281-298 43-60 (150)
420 3vlc_E Golgi to ER traffic pro 30.0 31 0.0011 27.9 2.6 24 300-323 61-84 (94)
421 1gax_A Valrs, valyl-tRNA synth 29.9 84 0.0029 34.0 6.8 30 29-64 398-427 (862)
422 4ati_A MITF, microphthalmia-as 29.8 31 0.0011 28.4 2.8 15 281-295 74-88 (118)
423 2aze_A Transcription factor DP 29.5 1.1E+02 0.0037 26.8 6.2 24 295-318 12-35 (155)
424 3swy_A Cyclic nucleotide-gated 29.5 1.5E+02 0.0051 20.9 6.2 22 283-304 7-28 (46)
425 3swk_A Vimentin; cytoskeleton, 29.4 2E+02 0.0068 22.3 10.0 39 290-328 44-82 (86)
426 2l5g_A GPS2 protein, G protein 29.0 78 0.0027 21.5 4.1 22 300-321 13-34 (38)
427 1lwu_B Fibrinogen beta chain; 28.9 83 0.0028 30.3 6.0 19 293-311 33-51 (323)
428 4gif_A Polycystic kidney disea 28.7 1.5E+02 0.0052 20.8 5.7 32 282-313 8-39 (45)
429 2aze_B Transcription factor E2 28.7 1.3E+02 0.0045 24.3 6.3 35 288-322 6-40 (106)
430 3thf_A Protein shroom; coiled- 28.6 2E+02 0.0068 25.9 7.9 30 276-305 14-43 (190)
431 3hhm_B NISH2 P85alpha; PI3KCA, 28.6 1.6E+02 0.0054 28.7 8.0 13 316-328 233-245 (373)
432 1j1e_C Troponin I, TNI; THIN f 28.4 1.7E+02 0.0058 26.1 7.4 44 280-323 64-107 (180)
433 4a3a_A Amphiphysin; structural 28.3 2.5E+02 0.0084 25.4 8.8 56 277-332 34-89 (243)
434 3nr7_A DNA-binding protein H-N 28.2 2.2E+02 0.0074 22.3 7.7 46 282-327 25-70 (86)
435 1yzm_A FYVE-finger-containing 28.2 35 0.0012 24.6 2.4 25 277-301 24-48 (51)
436 1rtm_1 Mannose-binding protein 28.2 66 0.0022 25.9 4.5 24 286-309 2-25 (149)
437 3csx_A Putative uncharacterize 27.9 1.5E+02 0.0052 23.3 6.2 62 255-329 16-77 (81)
438 2fic_A Bridging integrator 1; 27.9 2.3E+02 0.0079 24.9 8.5 21 287-307 189-209 (251)
439 3iox_A AGI/II, PA; alpha helix 27.9 4.4E+02 0.015 27.0 11.2 25 304-328 82-106 (497)
440 4avm_A Bridging integrator 2; 27.8 2.3E+02 0.0078 25.4 8.5 52 280-331 32-83 (237)
441 3pjs_K KCSA, voltage-gated pot 27.4 88 0.003 26.4 5.3 17 284-300 141-157 (166)
442 3zbh_A ESXA; unknown function, 27.2 1.4E+02 0.0046 22.1 5.9 27 302-328 56-82 (99)
443 3ibp_A Chromosome partition pr 27.0 2.7E+02 0.0092 26.8 9.0 6 286-291 229-234 (302)
444 3umh_A Amyloid beta A4 protein 27.0 1E+02 0.0035 28.2 5.9 47 281-329 43-89 (211)
445 3ghg_B Fibrinogen beta chain; 26.8 1.3E+02 0.0046 30.4 7.2 36 293-328 161-196 (461)
446 1flk_A TNF receptor associated 26.7 72 0.0025 28.5 4.8 29 286-314 41-69 (228)
447 3ghg_C Fibrinogen gamma chain; 26.5 1.9E+02 0.0066 28.8 8.2 42 289-330 92-133 (411)
448 3a5c_G V-type ATP synthase sub 26.4 2E+02 0.0069 25.9 7.8 49 284-332 26-74 (223)
449 3swf_A CGMP-gated cation chann 26.3 1.3E+02 0.0043 23.3 5.4 28 281-308 7-34 (74)
450 1dkg_A Nucleotide exchange fac 26.2 1.5E+02 0.0052 26.3 6.9 37 303-339 61-97 (197)
451 3l4q_C Phosphatidylinositol 3- 26.2 2.2E+02 0.0076 25.0 7.8 44 285-328 100-143 (170)
452 4i0x_B ESAT-6-like protein MAB 26.2 1.5E+02 0.005 22.9 6.0 15 282-296 33-47 (103)
453 4ad8_A DNA repair protein RECN 26.1 2E+02 0.0069 28.4 8.4 28 281-308 207-240 (517)
454 3gpv_A Transcriptional regulat 26.1 1.9E+02 0.0064 24.1 7.1 28 301-328 101-128 (148)
455 3pjs_K KCSA, voltage-gated pot 26.0 1.3E+02 0.0043 25.4 6.1 7 298-304 148-154 (166)
456 3n5l_A Binding protein compone 25.6 1E+02 0.0035 28.2 5.8 46 256-301 257-302 (310)
457 1fmh_B General control protein 25.6 1.3E+02 0.0043 19.5 4.4 18 310-327 9-26 (33)
458 1urq_A M-tomosyn isoform; tran 25.6 1.3E+02 0.0045 22.2 5.3 33 279-311 30-62 (63)
459 4b4t_M 26S protease regulatory 25.5 55 0.0019 32.6 4.2 34 287-320 38-71 (434)
460 4ioe_A Secreted protein ESXB; 25.4 1E+02 0.0035 22.7 4.8 27 301-327 55-81 (93)
461 3etw_A Adhesin A; antiparallel 25.3 2.9E+02 0.01 22.9 8.5 71 256-327 19-89 (119)
462 3gpv_A Transcriptional regulat 25.1 1.1E+02 0.0038 25.5 5.4 35 290-324 97-131 (148)
463 3brv_B NF-kappa-B essential mo 25.1 2.3E+02 0.0079 21.6 7.5 38 277-314 29-66 (70)
464 2efl_A Formin-binding protein 25.0 3.6E+02 0.012 23.9 9.6 17 303-319 138-154 (305)
465 1r8i_A TRAC; VIRB5, helical bu 24.9 99 0.0034 27.5 5.4 37 302-338 15-51 (213)
466 2p4v_A Transcription elongatio 24.7 2.7E+02 0.0092 23.6 7.9 20 308-327 52-71 (158)
467 1a93_A Coiled coil, LZ, MYC pr 24.7 1.1E+02 0.0036 20.4 4.1 8 297-304 23-30 (34)
468 3r4h_A Coiled coil helix CC-TE 24.6 1.4E+02 0.0047 19.4 4.5 29 303-331 3-31 (34)
469 4f3l_B BMAL1B; BHLH, PAS, circ 24.5 44 0.0015 31.9 3.2 62 254-316 3-64 (387)
470 2qyw_A Vesicle transport throu 24.4 2.6E+02 0.009 22.0 10.3 71 256-326 21-102 (102)
471 1deq_A Fibrinogen (alpha chain 24.3 3.3E+02 0.011 27.1 9.3 71 256-326 95-165 (390)
472 3ilw_A DNA gyrase subunit A; D 24.3 1.4E+02 0.0047 30.4 6.8 44 282-325 417-460 (470)
473 1fzc_A Fibrin; blood coagulati 24.1 77 0.0026 25.2 3.9 42 284-325 3-44 (87)
474 2gd5_A Charged multivesicular 24.1 1.2E+02 0.0042 26.1 5.7 38 291-328 10-47 (179)
475 3a6m_A Protein GRPE, HSP-70 co 24.1 1.4 4.8E-05 39.2 -7.0 63 280-342 18-80 (177)
476 2f1m_A Acriflavine resistance 24.0 1.6E+02 0.0054 26.1 6.6 73 256-328 59-131 (277)
477 2a3d_A Protein (de novo three- 24.0 2.3E+02 0.0077 21.1 6.3 50 280-329 8-71 (73)
478 1bb1_B Designed, thermostable 23.9 1.4E+02 0.0047 19.7 4.4 26 303-328 3-28 (36)
479 1s1c_X RHO-associated, coiled- 23.9 81 0.0028 24.2 3.9 32 297-328 1-32 (71)
480 1wrd_A TOM1, target of MYB pro 23.9 1.8E+02 0.0063 23.1 6.3 65 278-342 10-80 (103)
481 2vs0_A Virulence factor ESXA; 23.9 1.7E+02 0.0059 21.4 5.9 34 284-317 9-42 (97)
482 3tul_A Cell invasion protein S 23.8 1E+02 0.0035 26.9 5.0 48 280-327 75-125 (158)
483 3rvy_A ION transport protein; 23.8 17 0.00057 33.1 0.0 42 272-313 240-281 (285)
484 1ykh_B RNA polymerase II holoe 23.6 2E+02 0.0068 24.0 6.7 45 249-293 81-125 (132)
485 3vbb_A Seryl-tRNA synthetase, 23.5 1.8E+02 0.0061 29.8 7.6 83 268-352 15-148 (522)
486 2akf_A Coronin-1A; coiled coil 23.3 1.1E+02 0.0038 19.8 3.8 31 290-320 1-31 (32)
487 1xaw_A Occludin; coiled-coil, 23.3 3.5E+02 0.012 23.1 8.2 48 281-328 59-135 (140)
488 1ez3_A Syntaxin-1A; three heli 23.3 2.7E+02 0.0093 21.8 8.1 47 281-327 12-68 (127)
489 3mtu_E Head morphogenesis prot 23.3 2.4E+02 0.0083 21.9 6.5 38 290-327 32-69 (77)
490 2inr_A DNA topoisomerase 4 sub 23.1 1.5E+02 0.005 30.5 6.8 44 282-325 455-498 (514)
491 4ghu_A TNF receptor-associated 23.0 1.3E+02 0.0044 26.3 5.7 33 283-315 2-34 (198)
492 1a92_A Delta antigen; leucine 22.7 2E+02 0.0069 20.6 5.4 36 276-311 2-37 (50)
493 1gk7_A Vimentin; intermediate 22.7 1.5E+02 0.005 20.0 4.6 37 278-314 3-39 (39)
494 2pms_C Pneumococcal surface pr 22.6 1.2E+02 0.0041 25.6 5.0 51 279-329 59-116 (125)
495 1yc9_A VCEC, multidrug resista 22.4 4.6E+02 0.016 24.2 11.1 67 260-326 326-392 (442)
496 1lq7_A Alpha3W; three helix bu 22.4 72 0.0025 23.5 3.2 40 282-321 26-67 (67)
497 3l4f_A RHO guanine nucleotide 22.3 2.5E+02 0.0084 21.0 7.0 43 285-327 11-53 (61)
498 4avm_A Bridging integrator 2; 22.3 2.6E+02 0.009 25.0 7.8 53 276-328 134-190 (237)
499 2gkw_A TNF receptor-associated 22.2 1.4E+02 0.0048 25.7 5.7 33 290-322 2-34 (192)
500 1avy_A Fibritin, gpwac M; bact 22.2 2.1E+02 0.0072 22.0 5.9 34 283-316 10-43 (74)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=4e-14 Score=105.20 Aligned_cols=53 Identities=40% Similarity=0.553 Sum_probs=49.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999999999999999877653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.41 E-value=1.3e-12 Score=99.10 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|+.-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998777777666543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.38 E-value=1.6e-12 Score=97.81 Aligned_cols=57 Identities=33% Similarity=0.457 Sum_probs=51.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
||++|+++||+||++||.||++++++|+.+++.|+.+|..|+.+|..|+.++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999777666666654
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.35 E-value=1.4e-12 Score=98.48 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=50.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
|++||+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999777766666544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.28 E-value=4.9e-12 Score=96.32 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=44.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.++++.+||+|||+||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455999999999999999999999999999999999999988877653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.19 E-value=3.1e-11 Score=91.70 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.|+..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999977666655554
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.17 E-value=8.1e-11 Score=91.49 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=55.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 262 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 262 ~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999999888888888888888764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.96 E-value=2e-09 Score=86.84 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=50.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+.-..+|-.
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 666788899999999999999999999999999999999999997666555555544444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.88 E-value=5.6e-09 Score=82.66 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=48.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 261 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 261 R~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
...|+.+|.+||++||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus 16 Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556888999999999999999999999999999999999999977666555554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.81 E-value=1.1e-10 Score=97.35 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
..+..++|.+||+++||.+|+.||.||.+++++||.++..|+.+.+.|..++..|+.++..|+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999987766666655555555544444433333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.54 E-value=4.3e-07 Score=73.67 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+-.++|..||..+||.+|+-||.||.+.+++||.++..|..+.+.|+ .+...+..|...++.++..|.
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~-------~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK-------QEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 345678888999999999999999999999888876666655555555 444556666666777776664
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00094 Score=46.81 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|+|+.+||.++..|+..|.+|..+|..|++|+..|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999888876655555544
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.79 E-value=0.0048 Score=44.98 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.++|-++|+.|+.||..||.|++.=..++.+|+.|-.-+|+-|+.|.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578999999999999999999999999999999999999999988763
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.78 E-value=0.00053 Score=55.44 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQAECEELQA 288 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~~~eeLe~ 288 (352)
..+|..||+.+||.+|++||+||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34668889999999999999999998888753
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.56 E-value=0.0076 Score=47.90 Aligned_cols=55 Identities=31% Similarity=0.377 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++..... ++|+.|.-
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LLg 76 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44455566666666666666666655555556666666666655554 55554443
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.29 E-value=0.013 Score=48.15 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++-+||.++..|+.||..|+. +|..|..+++.|+.||..|+.+-+.-.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567789999999999988887 788888899999999999887765543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.97 E-value=0.026 Score=44.86 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
=|-++++|+.+-..|..+++.++.....|..++++|+.|...+.++|..|-|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999988865
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.83 E-value=0.037 Score=47.68 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+.+++.|+.+++.+..|+..|+.++..++.+++.+..++..|+.++..|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666666666666655555554
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.63 E-value=0.046 Score=41.07 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.-|.+|.+|..-|..|.+|+..|+.+++.|.+||..|+.
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 348899999999999999999999999999999999973
No 20
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.45 E-value=0.073 Score=39.47 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+++-+||.++|+||.|=++.++.... --..-.+||.+|+--|++++.--++..+.
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~---------------------vaaaks~en~rlr~l~kqmcpsldvdsii 58 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYRE---------------------VAAAKSSENDRLRLLLKQMCPSLDVDSII 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHCTTCCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhcccchHHHHHHHHhCCcccccccC
Confidence 34567999999999987765554322 22344567888888888888665555443
No 21
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.44 E-value=0.043 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 306 RLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+++++.|+.|+.+|+++|..|..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777788888888888877764
No 22
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=95.16 E-value=0.078 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++++..|+.-|..|..++..|+..|..++.|+.+|+.-|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999988765
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.05 E-value=0.22 Score=50.04 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++++.++.+.|+.|+..|+.+++..++...+|+.|+..++++|+++.
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666666666666666666666666666654
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.27 Score=43.19 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.-+.+..++.++.+..-++.=.....++.+-..-++.|+.|...|+-++..++.+...|+.||..|-+++.+..+.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE 140 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555444444555666666778899999999999999999999999999999988877665443
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.96 E-value=0.026 Score=37.68 Aligned_cols=27 Identities=41% Similarity=0.622 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999988764
No 26
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=94.80 E-value=0.07 Score=39.53 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++++..|++.|..|..++..|+..|...+.|+.+|..-|++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999999999999887765
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.77 E-value=0.036 Score=37.13 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5678999999999999988888887764
No 28
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.70 E-value=0.087 Score=39.50 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
-..+...|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888888888888888888888877654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.63 E-value=0.16 Score=51.07 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.1
Q ss_pred hhchhhcC
Q 018643 334 VANLEQSN 341 (352)
Q Consensus 334 ~~~L~~~~ 341 (352)
+..|++.+
T Consensus 574 ~~~l~~~~ 581 (597)
T 3oja_B 574 VKQLEAKK 581 (597)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 33444333
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.39 E-value=0.08 Score=35.88 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++.+||.+|+.|-.+|..|..++.+|+.-+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567899999999999999999998886544
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.35 E-value=0.25 Score=42.40 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+++++.++..|..++..++.+++.+++++..|+.++..|..++.+|.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555666666666666555553
No 32
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.35 E-value=0.18 Score=35.40 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.+|+.+|..|+.||+.|+.+.---+.-+.-|+.|...|+.+|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999998877777777888888888887764
No 33
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=94.18 E-value=0.083 Score=41.75 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888888888888877777777777666654
No 34
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=94.14 E-value=0.24 Score=39.46 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
-.||..|..+|..|++++..|+.+|..|++-....
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999998766544
No 35
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.11 E-value=0.45 Score=38.35 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 273 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 273 RrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|-|++-+-|...=..+- + .+...|..++..|..+.+.|+.||.++..++..+.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr--~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKR--V-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444322211 1 23455666666667777888888888887777664
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.11 E-value=0.062 Score=35.95 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5678999999999999999988888764
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.07 E-value=0.071 Score=36.14 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++.+||.+|+.|..+|..|..++.+|+..+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999988866543
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=93.99 E-value=0.14 Score=40.12 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+++++||.++..++.-.+.|-..|...+.++..|+.+...|.++|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999999999999988763
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.71 E-value=0.27 Score=41.45 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+|+.|+.|+..|..+|..+..+.+.|+.+|..|..+|..-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 345778888888888888888888888888888888877654
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=93.68 E-value=0.084 Score=35.15 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 568899999999999988888888764
No 41
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=93.60 E-value=0.18 Score=39.90 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+++++..|+.||..|++-+...
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988888776655
No 42
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.58 E-value=0.28 Score=35.67 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
.+|+.++..|...|..|..-+...+.++..|+.|...
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555555444444444444433
No 43
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=93.42 E-value=0.47 Score=34.95 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..+..|+.+...|..+...|..++..|+.|+..|+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666777777777777777777777777776655
No 44
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.40 E-value=0.091 Score=35.24 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678999999999999999888888764
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.40 E-value=0.13 Score=37.64 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+.|+.++..|+.+++.|+.++..|+.+|..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455555556666666666666653
No 46
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.27 E-value=0.098 Score=35.08 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678899999999999999888888764
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.23 E-value=0.61 Score=37.28 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++++|+.+-..|+.++..|..++..|+.-+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.19 E-value=0.27 Score=38.21 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777766666666666553
No 49
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=93.16 E-value=0.14 Score=34.84 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
-.||+.|..+|+.-.+++..|+.||.+|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 468999999999999999999999999875
No 50
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.13 E-value=0.076 Score=50.08 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
++.+|+.++..|...|..|..++..+++++..|+.|+.+|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666666555555555555544443
No 51
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.04 E-value=0.32 Score=34.06 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+..|+.+...|..++..|.+.+..|..||..|+.-|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345566666666666666666666666666665544
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.01 E-value=0.9 Score=33.76 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+..|+.+...|..+...|+.++..|+.|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566665555555555555555555544
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.98 E-value=0.39 Score=34.94 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788888888888888888888888889889988888773
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=92.97 E-value=0.79 Score=35.89 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
++++|+.+-..|+.++..|..++..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 55
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=92.91 E-value=0.12 Score=34.63 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999888865
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.74 E-value=0.14 Score=34.04 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567899999998888888888877754
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.58 E-value=0.24 Score=41.42 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.++..|+..+..|+..|..|...+..|+...+....-|.++
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 344555555555555555555555555555554444444444444
No 58
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.53 E-value=0.5 Score=39.03 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..++++++.+..|+.|+.....+++.++..+..|..+...|+.+|..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555544
No 59
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=92.51 E-value=0.0099 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018643 257 RELKRQKRKQSNRESARRSRLRKQA 281 (352)
Q Consensus 257 re~KR~RRk~~NRESARrSR~RKq~ 281 (352)
..++..||+-+||.+|++||+||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3467888999999999999999864
No 60
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=92.39 E-value=0.35 Score=44.31 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
||..|..+|..|++++..|+.||.+|++
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.04 E-value=0.28 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
..++.|+.||..|+.++..|+++++.|+.+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777776543
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.01 E-value=0.88 Score=50.47 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 018643 314 LTSENNSIKEDLSRL 328 (352)
Q Consensus 314 L~~EN~~Lk~~L~~l 328 (352)
|+.||..|+.++.+|
T Consensus 1028 L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 63
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.85 E-value=0.93 Score=34.84 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+|+.....|..||..|+.+|..|..++.
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 64
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.78 E-value=0.21 Score=32.53 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++..|+.+|.+.+.||-+|.+++..|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356788889999999999988888887776
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=91.56 E-value=0.71 Score=35.75 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
...|+.++..|+.+.+.|+.+|..|+.+|..|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4457777777888888888889999988888764
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.16 E-value=0.56 Score=42.47 Aligned_cols=8 Identities=50% Similarity=0.538 Sum_probs=3.2
Q ss_pred hhhchhhc
Q 018643 333 AVANLEQS 340 (352)
Q Consensus 333 ~~~~L~~~ 340 (352)
.|++|++.
T Consensus 110 ~ireLEq~ 117 (189)
T 2v71_A 110 YVRELEQA 117 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 67
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.08 E-value=1.9 Score=34.07 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
-+-+|..+++.|+.|+..||-+++.+..+++.|......+-..|...-....++.|
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~ 76 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQL 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34668888888888888888888888888888888877777777655444333333
No 68
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.07 E-value=0.93 Score=33.94 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
...-+.....|..++..|+.++..|..|...|+++|
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666554
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.04 E-value=2.4 Score=35.63 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 275 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
....-+.++.+|+.+|..|+.|...-+........+|+.|+.|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777766666655555555555555544
No 70
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.77 E-value=0.24 Score=46.65 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCC
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 342 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~ 342 (352)
+.++..|+.++..|..++..|..++..|+.|+.+|+++|.+|.. +-.+..+...++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~d 109 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHD 109 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 67889999999999999999999999999999999999999976 444555544443
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=90.56 E-value=0.79 Score=45.40 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.++++++|+++++.|+.++..|..++..|++++...+.+-+.|..+|.+|.|.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667777777778888888888888888888888788888888888888753
No 72
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=90.38 E-value=0.81 Score=45.56 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+++++|+++++.|++++..++.++..+++++.+...+.+.|..+|.+|.+
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356777888888888888888888888888888888888888889988875
No 73
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=90.02 E-value=3.2 Score=32.19 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 263 KRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~L---e~EN~~Lr---~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.....+-|+-|.+=...+.+|..-|-.. ......|. .-|..|+.+...|..|+..|+.++...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666666666566777776644321 01112222 235667777788888888888887765
No 74
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.95 E-value=2.1 Score=31.58 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
....|..++..|..++..|..+...|+.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 75
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.83 E-value=2.2 Score=30.77 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+..++++..++..++.+...++.++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666666666666666655555554
No 76
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.74 E-value=3.6 Score=32.56 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
|=.||=.+-.|-| ..+.+++...+..|..+.++|.....++..|..|...|+.+|..|..
T Consensus 14 eLQSALeaEIqAK---Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTR---QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444 24455667788889999999999999999999999999999998753
No 77
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=89.64 E-value=1.4 Score=34.98 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..+|+.+++++..|+.||.+|++-....
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888765543
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.60 E-value=1.5 Score=33.99 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
...+++|+.++..++.++..|+.++..
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.36 E-value=4.6 Score=31.72 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...+++++.|.+--+.|..=-..|..-|.+|.++...|......|+.+...|.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778777777777777777888888888888888888888888888775
No 80
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=89.36 E-value=1.8 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
-+..|..+...|..+.+.|+.+|..|+.+|..|.+
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35567777777888888899999999999988864
No 81
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=89.34 E-value=0.48 Score=31.73 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++.+||.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888888888888877754
No 82
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.27 E-value=1.7 Score=35.03 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDE 303 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~e 303 (352)
+.+|+..-..|..+...|..+
T Consensus 27 L~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.23 E-value=3.6 Score=34.29 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=37.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 018643 267 SNRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECE-------KLTSENNSIKEDLSRL 328 (352)
Q Consensus 267 ~NRESARrSR~RKq~~~eeLe~kv~~Le~---EN~~Lr~el~~L~~e~~-------~L~~EN~~Lk~~L~~l 328 (352)
.|=.+|-+.=..|+..|++|++++..++. .+..|+.++...+.... .|..|..+|..+|..|
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 34555666666677777777777777766 55567777666655544 3444444444444444
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=89.17 E-value=0.63 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++.++...+.++++|+.+|..|.+++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45555556666666666677776666554
No 85
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=88.99 E-value=0.65 Score=36.42 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|-.+|+.|..|+..|+.++..+++-...++..+..|.++|+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555554444444444444444443
No 86
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.73 E-value=1.4 Score=34.43 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
++|+.++..|+....-+..-|+.|...+.....+...|+.+|..|. +.+.++...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence 4688899999999999999999999999999999999999999887 666665543
No 87
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=88.68 E-value=1.4 Score=32.08 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..|..++..|..||..|+.+|..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666666665553
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.28 E-value=1.7 Score=48.25 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+++.++..|+.|+..|+.++..+.++.+.|+.++..|++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555544444443
No 89
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=88.08 E-value=3.9 Score=32.56 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..-+.+++.|+.+..+++..|..|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444555555544
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.00 E-value=1 Score=46.45 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
++.++|++++..|+.+...-...|..|+.-++.++.+.++|.
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466666666665555544555555555555555544444
No 91
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.98 E-value=6.6 Score=34.89 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 266 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 266 ~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.-=+.-|+.|.+-.+.+.+|+.++..|+.|...++.. ...+..+|..|.++|..|.
T Consensus 75 Qa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 75 QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555554444443 3444455555555544443
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.84 E-value=0.62 Score=36.06 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
.|+..|+.++..|+.+...|+.++..|+.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 93
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.59 E-value=2.9 Score=32.32 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+++.++.++...+.++..+-.+|..|++.+..|+.+...+.++|..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555555555444444443
No 94
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=87.55 E-value=0.25 Score=46.08 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.++.+.|++||..|+.++. +++.|+.||.+|++.|.-.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCc
Confidence 33344444444444444433 3367888999998876643
No 95
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.41 E-value=10 Score=30.55 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRN 299 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~ 299 (352)
.++-.++..|.+++..|+.+...
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.33 E-value=2.9 Score=34.12 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 286 LQARVETLSNENRNLRDE--------LQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~e--------l~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.+...++.|.+.|... |..-+.+...++..|..|+++|.+.
T Consensus 45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444332 3444667777888888888888764
No 97
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=87.24 E-value=1.1 Score=34.99 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
|+.+...|..+++.|+.||..|+.+|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555555555554
No 98
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.60 E-value=9.4 Score=29.38 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.|..--..-...+.+++.++..++.+...|..++..|..+++.+.........+|..-
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555667777778888888888888888888888888877777777776654
No 99
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=86.58 E-value=1.3 Score=40.70 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
++.|+.++..|+.++..|+.++-++..+++-++....+=++.+.+.....-+.+|+..+|
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlD 120 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLD 120 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555555555555555555555555555555555555555555555555554443
No 100
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.53 E-value=6.9 Score=35.31 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 018643 313 KLTSENNSIKEDLSRL 328 (352)
Q Consensus 313 ~L~~EN~~Lk~~L~~l 328 (352)
.|+.++..|+.+|.+|
T Consensus 99 ~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 99 QTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 101
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.50 E-value=3.8 Score=29.79 Aligned_cols=45 Identities=2% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+++|..+|..|..+...|..++..|+.+....+.|-.+--++|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777777777777777666666666666555555543
No 102
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=86.49 E-value=0.4 Score=37.49 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcC
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
+|.+.|+.+|..|.+++.+|+.||..||. +..++.+..|...+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 45567888888888888999999988875 45666666666555
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.48 E-value=11 Score=30.23 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+.+.++.++..++.++..+-.+|..|++.+..|..+...+.++|
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333
No 104
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.18 E-value=9.2 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018643 306 RLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.++..|+.++..|+..|.+|
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 105
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.17 E-value=6.1 Score=32.07 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhc
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~ 340 (352)
...|-.+|-..=..|+..+++|...+..++ ..+..|+.++...+..+..=++.-.+|..+...|. +.++.|...
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q 83 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHH
Confidence 345566777777778899999998888887 56677888888887777666655555555555544 444444443
No 106
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.06 E-value=4.3 Score=33.31 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
..+.+|+.+|+.|..||..|+.+.+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666555555554433
No 107
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=85.99 E-value=3.4 Score=32.04 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+.+-+.++..|+....--.+-.++|..++-.|.-||.-|.++|.+|.
T Consensus 27 L~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 33334555555555555555667788888889999999999988875
No 108
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=85.95 E-value=4.2 Score=31.41 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+.++..+..|+.+...++.++.....+++.|.+=...|-.+|...
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777666554
No 109
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.80 E-value=4.8 Score=28.94 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...|+..+..+..+...++.++..++..+..+..+...+++.|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666776666666666666666666666653
No 110
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=85.73 E-value=1.6 Score=28.34 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
...|++++..|+.++..|+-|...|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444455555554444
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.60 E-value=4.9 Score=35.72 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
|+||++ .+|...+..++..+..|+..+..|......|..|+..|..+|.
T Consensus 31 rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 31 RLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366665 4555555555555555555555555555555555555544443
No 112
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.23 E-value=6.5 Score=31.50 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNE 296 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~E 296 (352)
+-.++..|..++..|+.+
T Consensus 42 ~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 113
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.21 E-value=1.5 Score=34.02 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|+.-+....+|.......|..|..++..+..++..|+.+|-+++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333444444444555555555666666666666666553
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.14 E-value=4.5 Score=34.08 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|+.+...-+....+|+.||..|.++++.+..|..+|+.+...+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 34433333344466677777777777777777777777666654
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=85.10 E-value=2.6 Score=34.70 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
-+++-|..+++.++....+|+.++....++++.++..+..|+.++..+...-.-+
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999887543333
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.05 E-value=1.4 Score=43.52 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
-++++++|+++++.|+.++..|.+++...+.....|.++...|+..|+=
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 3445566777777777777777777777777777777777777665543
No 117
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.99 E-value=3.9 Score=28.98 Aligned_cols=6 Identities=33% Similarity=0.268 Sum_probs=2.1
Q ss_pred HHHHHH
Q 018643 314 LTSENN 319 (352)
Q Consensus 314 L~~EN~ 319 (352)
|+.|..
T Consensus 36 lrdeia 41 (52)
T 3he5_B 36 LRDEIA 41 (52)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 118
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.89 E-value=4.1 Score=31.94 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 286 LQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el-------~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+-++|+.|-.||.+|.+-- ..|-.+.+.|..|+..|+.+|..+
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4456666666666655422 223334444555555555555444
No 119
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=84.39 E-value=4 Score=31.57 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus 24 ~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 24 SEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333344443333444444444444444444444445555544443
No 120
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.35 E-value=7.5 Score=37.97 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+|++|+.++..|..+...+++++++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 121
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=84.32 E-value=6 Score=30.95 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
|.+++.|+.+++.|+.+...|..++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888888888888888877764
No 122
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=84.28 E-value=9.5 Score=38.89 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~----------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.-+.++++|+.+...+..+... |..++..|+.++..|+.+...|.++|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443 3334444444444444444444444433
No 123
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=84.19 E-value=1.7 Score=39.29 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.|..||..|..+++....+++.|+.
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 124
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.10 E-value=5.6 Score=31.37 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|...+..|+.+|..|+-.++.+.-++..|+.+-+++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 125
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.85 E-value=13 Score=31.03 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.+.++..|......|..+|..|...++.....|..|...-.++
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 126
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.81 E-value=1.8 Score=43.28 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
.+|..+++.|+.+...|..+.+.|+++...|+.|...|+++++.++.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666667777777777777777754
No 127
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=83.74 E-value=2.1 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+||..|+.+...|..+...|+.+...|+.+++.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444433
No 128
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.74 E-value=9.7 Score=37.34 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++++....+++.|++||+.|+.++..+..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 33333334444444444444444433333
No 129
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=83.71 E-value=12 Score=28.14 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 263 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.-..+||+-|-..=.. .+++|...+..-..+....+.+|..|+..++.|+.|...|+
T Consensus 20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345666655442222 24566666666666666677777777777777777766664
No 130
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=83.60 E-value=3 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..++..+..|+.+...++.++.....+++.|.+=...|-.+|...
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3466778888888888888888888888888888777777777665
No 131
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.54 E-value=14 Score=29.50 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.+...|+.+|..+..+...|..|...|.+.+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444344443333333333
No 132
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=83.45 E-value=1.6 Score=40.77 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~eeLe~-------kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
.+|-||.++-=.==-|+|+-|...++++-. +++.|+.||..|+.+|+.|+++..+.+.+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 357777654433334455555555554444 44444444444444444444444444433
No 133
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.33 E-value=8.9 Score=33.57 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
-++.|..++..|+-++..|..++..|+.|+..|..
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666655553
No 134
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.28 E-value=4.5 Score=31.79 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.+++.-+.+-..++.++..+.+.+..--.|...|+..|.+|
T Consensus 30 ~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 30 RAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333334443333444444444444444444444444555444443
No 135
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=83.08 E-value=0.96 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
.|++.|..|++++..|+-++..|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 44555555555555544444433
No 136
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.03 E-value=12 Score=34.19 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDE 303 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~e 303 (352)
|..+++.++.++..|..+
T Consensus 95 L~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 95 LNIEEDIAKERSNQANRE 112 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 137
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=82.94 E-value=5.1 Score=28.47 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+||++|+.|+.-...|+.++.+|-.++.. -...|+.+|..|+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888888888888888777655544 3456777777664
No 138
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.91 E-value=1.2 Score=32.67 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+.++++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555443
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=82.71 E-value=6 Score=31.28 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
.+=+.....++.++...+..|..|..++..|+++++.|+.+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33445556667788888888888888888888888776654
No 140
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=82.44 E-value=9.2 Score=30.40 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.|...-+.+|..|+++++.++.-...|
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444443333333
No 141
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.29 E-value=2.9 Score=40.54 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.++..||..|...+.+...|+..+..++.++..|..+...|+.+|...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666777777777777777777777777777777777777776544
No 142
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.26 E-value=15 Score=28.77 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-...++.++..+..|+.+...++.++.....+++.|.+=...|-.+|...+
T Consensus 26 ~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 26 LARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345677788888888999999999999988899988888888888876653
No 143
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=81.88 E-value=5.8 Score=27.69 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..|..+++.|+.....|+.+|+.|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666677777776664
No 144
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.74 E-value=18 Score=28.87 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 264 RKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 264 Rk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++|+....-....+.+++.|..+=..+-.+-..++.++..+..+...|.++..--..+|.+|
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444333333334444333333333333444444444444444444444444444443
No 145
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.73 E-value=9.4 Score=31.75 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++-..|.+++.|+.++.+|+.+++....-...|..+|..|...+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 344455566777777777777777777666677777777776555444
No 146
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.72 E-value=16 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|-...+..++..+..|+.+...++.++.....+++.|.+=.-.|-.+|...+
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455677888899999999999999999999999999988888888887653
No 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.45 E-value=10 Score=38.60 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|+.++..|++++..|+.+..+|.++|..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 148
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.09 E-value=16 Score=30.33 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|+.++..|+.....+...+..|..+...|..+...|+.+|..+
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555555555544
No 149
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.02 E-value=19 Score=28.66 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.+.|+.++..++.++..+-.+|..|+..+..|..+...+..+|.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 150
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=81.02 E-value=6.9 Score=39.31 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.++..|++++..|+.+...|.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 151
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.67 E-value=19 Score=28.28 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+-.....+|+.+...|..+...|..++..+...|..|......|-.+|..+.
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788888899999999888899999999999999999999888874
No 152
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.63 E-value=23 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+..++..+..|+.+...++.++.....+++.|..=.-.|-.+|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777777777777777777776654
No 153
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.59 E-value=14 Score=33.77 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++.+|+.++..|+.+...++.++..++.++..+..+...++.++.+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 154
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.25 E-value=3.9 Score=31.76 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
.+||..|+.+...|+.|+..|+.++..|+.++++|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46777888777777777777777777776666543
No 155
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.05 E-value=3.5 Score=33.77 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.+..|..+++.|+.||..|+.+++.|+-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444443
No 156
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=79.97 E-value=0.83 Score=42.63 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+.+..+.+.+..+++.|+.++..|+.+...|+.+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444333
No 157
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.82 E-value=25 Score=29.13 Aligned_cols=47 Identities=11% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+..++..+..|+.+...++.++.....+++.|.+=.-.|-.+|...
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666677777766677776666666666666554
No 158
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.58 E-value=7.2 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.|..+...|..++..|+.+...|+.+...-+++..+-
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888887777777666543
No 159
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.48 E-value=12 Score=31.28 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+-+..|..|+..+..|..+|..-+........||..|+.++..+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888888999998888888899999999999999774
No 160
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.44 E-value=25 Score=29.18 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.+.-|+++++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 467777788887777777767777788888888888888888887665
No 161
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.12 E-value=11 Score=29.85 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+.|..+++.++.|+..|+.++..| ..|-.+-+.|.+-|.+|.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555554 334445555666666554
No 162
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=78.99 E-value=5.8 Score=32.90 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQAR-------------VETLSN---ENRNLRDELQRLSEE---CEKLTSENNS 320 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~k-------------v~~Le~---EN~~Lr~el~~L~~e---~~~L~~EN~~ 320 (352)
|+.+|+...-.+-|+-|.+=...+.+|..- +..|+. -...|+.++..|+++ ...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666656667776653 333332 223355555555443 4567788888
Q ss_pred HHHHHHHhc
Q 018643 321 IKEDLSRLC 329 (352)
Q Consensus 321 Lk~~L~~l~ 329 (352)
|..+|..|+
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888888775
No 163
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.89 E-value=2.9 Score=32.41 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
-+|+..|+.++..|+.++..|+.++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777777777777777766544
No 164
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.67 E-value=4.3 Score=41.96 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|+.+|..|++++.......+.|+.-|+++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555444444444444444444443
No 165
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.64 E-value=5 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++||.+|+.|+.-...|+.++.+|-.++... ...||.+|..|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4577777777777777777777776555433 234444444443
No 166
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=78.49 E-value=1.6 Score=33.70 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++|.+++..++..+..|..-+..-...+..|..+|.-||++|+.+.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666677777777777777765
No 167
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=77.88 E-value=27 Score=28.58 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 263 KRKQSNRESARRSRLRKQ----------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 263 RRk~~NRESARrSR~RKq----------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
+|..+|+.+-+.--.+=. +++...++++..-..|-.++..+++.|-.++-.|++|..+|+.
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456667666653322222 3333344444433334444444444444444455555555543
No 168
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.76 E-value=4.6 Score=27.01 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455555566666666666666666544
No 169
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=77.52 E-value=24 Score=35.90 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENR 298 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~ 298 (352)
-+.++++|+.+...+..+..
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 170
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=77.27 E-value=18 Score=27.15 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..+++.|+.....-...+...+.++..|+.....|..+|..+.+
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35677777777777777777788888888888888888877653
No 171
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=77.17 E-value=4.2 Score=26.43 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++..|..+|+.|+..|-..++++..|+.+|
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355677788888888888888877777665
No 172
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=77.12 E-value=25 Score=34.77 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.++..|++++..|+.+...|.++|..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555543
No 173
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.98 E-value=4.3 Score=40.31 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.+++|+++++.++.++..|.+++.....+...|.++...|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3445666666666666666666666666666666666666665543
No 174
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.42 E-value=12 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhchhh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG--PEAVANLEQ 339 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g--~~~~~~L~~ 339 (352)
..++.+...|++.+..+.-....|+.+...|+++|.=|.. .+.|..|..
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666777777777777665532 334454443
No 175
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=76.24 E-value=3.4 Score=39.57 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
+++.|+++|+.|+.++++|+.+.+.+...
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445555555555555554444444443
No 176
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=76.21 E-value=21 Score=36.32 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 279 KQAECEELQARVETLSNENRNLRD-----------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~-----------el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
-+.++++|+.+...+..+...|+. +.+.|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~--~~l~~~l~~iPN 155 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE--EQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 334445555555555544444432 233455555555555555555555554 555555555555
No 177
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.20 E-value=32 Score=33.43 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|..++..-+.++++|+.|...|..+|+.++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455566666666666655554
No 178
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.18 E-value=4.4 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
+|...++.|+.|++++..|+.+..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 179
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=75.10 E-value=8.1 Score=29.82 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
|...|..|..|++.|..++..+++++..++
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666655554
No 180
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=74.97 E-value=24 Score=28.25 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+++.++..+..|+.+...++.++.....+++.|..-...|-.+|...
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888777777777665
No 181
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.92 E-value=10 Score=26.83 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
||+.-+.|+.....|+.++.+|.+
T Consensus 22 lerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHH
Confidence 334344444444444444444433
No 182
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.59 E-value=7 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|..+...|++|..+|++.|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555555555555666666666666554
No 183
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.57 E-value=1.5 Score=43.93 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
..||..+...+.+...|+..+..++.+++.|+....+|..
T Consensus 94 ~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 94 IRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444433
No 184
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.05 E-value=8.4 Score=35.10 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDEL 304 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el 304 (352)
|..+++.|+.++..|..++
T Consensus 144 L~~e~~~l~~~~~~l~~ql 162 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQGRF 162 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 185
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=74.04 E-value=1.2 Score=43.17 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+++..||.+|..++++...|+..|..|+.+++.|......|..+|...
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567778888888888888888888888888888888888887776654
No 186
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.98 E-value=17 Score=28.65 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
-+++.+|.-+|..|+.|-.+...+|..-+.++..|..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3556666666666666655555444444444444443
No 187
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.95 E-value=23 Score=31.40 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk 322 (352)
+|..|.+++..|+.+...++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 188
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=73.68 E-value=9.6 Score=28.16 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
-..|..+|..|+..|.+..+|+.+|.
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999888888884
No 189
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=73.44 E-value=10 Score=29.28 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSE-NNSIKEDLSR 327 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E-N~~Lk~~L~~ 327 (352)
+|...|..|..|++.|..++..+++++..++.| ...|++.|..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek 46 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777766533 2234444444
No 190
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=73.37 E-value=4.8 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L 307 (352)
|..-+..|+.||.+|+.++++|
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554443
No 191
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.19 E-value=33 Score=27.22 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.++.+|..+|+.+..++..|..++..|..+...
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444433333
No 192
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.08 E-value=36 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|+.++...+.+...|..++..-+..+...+.++..|..+|..|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544444445555555555555444
No 193
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.50 E-value=6.4 Score=39.24 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
.++..|+++++.|+.+++.|+.++..|++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788899999999999999999999999999999888764
No 194
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=72.43 E-value=2.5 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.|+=||..|.+++..|++++..|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 455566666666666665555543
No 195
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=72.21 E-value=13 Score=34.02 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+++|+.+-....++...|....+.|++|+..|+..|++|.|..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4456666677777888888888999999999999999999854
No 196
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=72.17 E-value=24 Score=27.14 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+-|...+..+..|+.++..++.+.+....+...|-.-...|..|...-+.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778889999999999999999888999998888899999888776554
No 197
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.80 E-value=41 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
...+..++..|++.+..+..-...|..+|..|. +.|..|.
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~--eEl~FLK 103 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQ--EEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 333444444444444444444444455555444 3444443
No 198
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=71.78 E-value=16 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+++.++..++..|..+...|+..+..|.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555444
No 199
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=71.56 E-value=0.57 Score=38.89 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|..++..|..+.+.|..||..|+.++..+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555554444
No 200
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=71.41 E-value=5.8 Score=30.26 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
..|...+.+||..+..-..++.+|+.++.+++.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888888877665433
No 201
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=71.33 E-value=7.6 Score=34.92 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.++-|=.++..|+.+|..|++++++|+.+.+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 202
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.14 E-value=31 Score=26.96 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.+...+.+++.|..-...|+.=-..|..-+..|..|-..|...|..|.
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
No 203
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.00 E-value=9.5 Score=37.91 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.++||+++..|+.....-...|..|+..++.++.+..+|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877665544477777777777777777776655
No 204
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.74 E-value=2.3 Score=35.47 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999998863
No 205
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=70.71 E-value=13 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+...|.++++....|+..|+.++..|+++..
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444444555555555555444443
No 206
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=70.61 E-value=18 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
.++|+.++..|+..|..|+.++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888887777544
No 207
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.32 E-value=9.8 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 270 ESARRSRLRKQAECEELQARVET 292 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~ 292 (352)
..-|+-|.+=...+++|..-|-.
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~ 40 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPS 40 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCcC
Confidence 33333333334555666554443
No 208
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.24 E-value=6.4 Score=32.77 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018643 311 CEKLTSENNSIKEDLSR 327 (352)
Q Consensus 311 ~~~L~~EN~~Lk~~L~~ 327 (352)
+..|+.+...++.++..
T Consensus 84 i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 84 LAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 33444455555544443
No 209
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=70.21 E-value=10 Score=36.77 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
.+..|+.+++.++.....|+.+|..|++
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 210
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.07 E-value=9.4 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|++|..+|++-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555555555666666666666544
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.82 E-value=16 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+..|+.....|..++..|..++..+..+...|+..|..+.+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666667777777777777777777777776654
No 212
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=69.67 E-value=8 Score=30.67 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L 307 (352)
++.+...|+..|..|..++.+|
T Consensus 54 ~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 54 LENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHH
Confidence 3444444444444444444443
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=69.62 E-value=28 Score=27.66 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDE------------LQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~e------------l~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++++..|+.++..|+.+...|+.+ .-.+-.++..++.--..|...|..++|
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 344555555555555555555432 223334455555555566666666665
No 214
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=68.90 E-value=7.3 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|..+++.|-.+...|+.|..+|++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444444444
No 215
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.85 E-value=11 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|..+...|.+|..+|+..|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3444555555555556666666665554
No 216
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.77 E-value=20 Score=44.40 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
++++..+|.++|..|+.+++.+..|...|+.++.
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 217
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=68.49 E-value=3.6 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
|.|..++..|+..|..|..|...
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~ 40 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTL 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333
No 218
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=68.48 E-value=13 Score=33.44 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
..+.+|++++..|+.+|+.|+.+.+...+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666655555443
No 219
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.21 E-value=0.088 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 018643 258 ELKRQKRKQSNRESARRSRLRKQ 280 (352)
Q Consensus 258 e~KR~RRk~~NRESARrSR~RKq 280 (352)
-++..||+-+||.+|++||+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 35667889999999999999985
No 220
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.19 E-value=11 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 302 DELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++...-.....|+.+|..|..+|..
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444556677777777766653
No 221
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.15 E-value=4.9 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 018643 308 SEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..-+..|+.||.+|++++++|-
T Consensus 5 nallasleaenkqlkakveell 26 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888887763
No 222
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.95 E-value=5.2 Score=28.95 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.+++.|+.++..|+.++..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888887777655
No 223
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=67.73 E-value=32 Score=27.00 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|..+|+.++.|+..|+.++..| ..|..+-..|.+-|.+|
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 344445555555555555554444 34445555555555554
No 224
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.71 E-value=32 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
..|..+...|..........+..|......|......|.++|
T Consensus 45 ~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 45 VTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444455555555555555555555555555554
No 225
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.26 E-value=39 Score=33.38 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 305 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
..|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 103 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3455555555555555555555554 555555555555
No 226
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.19 E-value=5.4 Score=39.89 Aligned_cols=46 Identities=39% Similarity=0.431 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+|+.++..|+.|...|+.++.+++.++..|+.+...+++++..+..
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455555566666666667777777777777777777777776654
No 227
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.11 E-value=12 Score=25.04 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|++|..+|++-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555555555556666666665544
No 228
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.97 E-value=48 Score=28.92 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-----cchhhchhhcC
Q 018643 306 RLSEECEKLTSENNSIKEDLSRLCG-----PEAVANLEQSN 341 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l~g-----~~~~~~L~~~~ 341 (352)
.-+.+...++..|..|+.+|.+-.+ +..|.+|+..+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888877654 34444444433
No 229
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=66.86 E-value=21 Score=33.41 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
..++.+|..+++.|...-..+.++|..|+++=..|+.++..++.+|..++-
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999988863
No 230
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=66.74 E-value=19 Score=32.15 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENN 319 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 319 (352)
-++.|..|+.+|..|..++...++++..+..+..
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554433
No 231
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.72 E-value=43 Score=30.60 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++-+.|..+|+.|+.|+..|+.++..|+ .|..+..-|..-|.+|.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 4445666666667777776666666553 344444555555555544
No 232
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.53 E-value=30 Score=35.21 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDEL 304 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el 304 (352)
|..+++.|+++-..+.++|
T Consensus 45 ~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 233
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=66.42 E-value=20 Score=35.17 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|=+..++.|..+++.|......|..++......+..|..+...|+-+|..|+
T Consensus 202 ~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~ 253 (373)
T 3hhm_B 202 RIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLR 253 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 3344455566666666666666666666655555666666666665555544
No 234
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=66.18 E-value=25 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+.|+.+++.|+.....|+.++..+..+++++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 235
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.07 E-value=14 Score=23.97 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.||+.+..|+.-.++|++++.+|++-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777765543
No 236
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=65.81 E-value=21 Score=28.15 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
.+.|-+|...||-+++.|.++..+-+
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyE 46 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYE 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 237
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=65.63 E-value=25 Score=31.46 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 018643 318 NNSIKEDLSRL 328 (352)
Q Consensus 318 N~~Lk~~L~~l 328 (352)
|..|+++|..+
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 238
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=65.41 E-value=58 Score=28.12 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 268 NRESARRSRLRKQAECEELQARVETLSNENRNLRD------------ELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 268 NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~------------el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
||..--.++.+=-.+++.|=.+|+.|+.-.+.||. ++..+..++..+..+...|.+.|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666667777777777777777777776 455666666666666666555443
No 239
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.38 E-value=6.2 Score=28.73 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 305 QRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+..+++.|..||..|+++|..+.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666654
No 240
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=64.95 E-value=66 Score=27.53 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQ---------------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq---------------~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.|.++.+-||.-+-.-|..-. ...++..+++..++.+......++......|..|..+...+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777776666554322 22455666777777777777777777777777777777777766
Q ss_pred HHHhc
Q 018643 325 LSRLC 329 (352)
Q Consensus 325 L~~l~ 329 (352)
|+.|.
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 66664
No 241
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.79 E-value=33 Score=34.38 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 280 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
+.++++|+.+...+..+...|+. +...|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK--KKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33444444444444444443322 134555566666666666666666665 556666666655
No 242
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=64.63 E-value=57 Score=33.61 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 270 ESARRSRLRKQAECEELQARVETLS 294 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le 294 (352)
|.|+|-=+|-+++|++.+.-+.+++
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444343333
No 243
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=64.08 E-value=15 Score=24.44 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|++|..+|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455556666666666666666666544
No 244
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=63.99 E-value=17 Score=26.86 Aligned_cols=14 Identities=14% Similarity=0.480 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 018643 314 LTSENNSIKEDLSR 327 (352)
Q Consensus 314 L~~EN~~Lk~~L~~ 327 (352)
++.|...|.++|.+
T Consensus 53 veeevkkleeeikk 66 (67)
T 1lq7_A 53 VEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34555555555544
No 245
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=63.96 E-value=34 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+..+|..+..+++.|+.+...|...|.++.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777788888877777777774
No 246
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=63.47 E-value=46 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|+..+.+|...|..|.++.-.|+.....-.-+|.+|
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL 82 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 34566666666666666666555554443333333333
No 247
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=63.25 E-value=13 Score=31.53 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+|..+|+.|..|+..|++++..|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665554443
No 248
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.07 E-value=22 Score=32.91 Aligned_cols=44 Identities=9% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
+++..|+++++..+.|+..++..+...++...+|+..-.++.-+
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 36678888888888888888888888777777777666655433
No 249
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=62.91 E-value=22 Score=28.70 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
-+.|+-++|..++...- --.+|..|..|+.+|..|...+..+|..|-|++..+
T Consensus 33 vikEIs~Kv~~Iqn~~L-~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~ 85 (92)
T 1x4t_A 33 IIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 85 (92)
T ss_dssp HHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred HHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 34555566665554211 123678888888999999999999999999998755
No 250
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=62.75 E-value=25 Score=27.89 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++-+.|..+|+.|+.|+..|+.++..|++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665544
No 251
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.48 E-value=12 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|..+++.|-.+...|++|..+|++-
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444445555555555543
No 252
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=62.22 E-value=45 Score=24.65 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.-+.+|+.++..++.-...|..+++.+..+.+.+..++..=++.|..|
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~L 53 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSL 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345667777777777666666666666666665554433334444444
No 253
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=62.09 E-value=6.8 Score=39.25 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 270 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 270 ESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+-+.-.+=.+++..|+.-+...+..+..|+..+......+..|+....+|..+|..
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3343333334455555566666666666777777777766666666666666665544
No 254
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=61.96 E-value=20 Score=33.21 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
..+..++..|++..+.++.|...+..++++.+....+|+++-.
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555555555555443
No 255
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.87 E-value=27 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+...|..++..|+.+...|..+...|..++.
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 256
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=61.84 E-value=20 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++.++..+++.|...-..+-.+|..|.++=..|+.+...+..+|..++
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888888888888888877776653
No 257
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.73 E-value=12 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|.+|..+|++-|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344555555555555666666655543
No 258
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.55 E-value=55 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..|..|+.++..-...+..|..+...|+.-+..+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555544444455555555554444433
No 259
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.39 E-value=7.1 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|+.++..|+.++..|+.+...|.++|..+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 260
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=60.81 E-value=16 Score=33.71 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSN---ENRNLRDELQRLSEE 310 (352)
Q Consensus 284 eeLe~kv~~Le~---EN~~Lr~el~~L~~e 310 (352)
.+||.++..|-+ +|..+..++..|...
T Consensus 82 ~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 82 IEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433332 555555555555443
No 261
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=60.69 E-value=10 Score=27.13 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
-..||.-|..|+..|..|...+..|+..+..|+..
T Consensus 19 naklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777666666543
No 262
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.13 E-value=30 Score=28.60 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+++.|+.++..|+.........+..|..+.+.|.
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3444444444444444443333333333333333
No 263
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=60.10 E-value=40 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 305 QRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..|++++..|..|...|...|..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555566666666666655543
No 264
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.80 E-value=22 Score=27.73 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
|+.....|..++..|..++..+..+...|+..|..
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555543
No 265
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=59.33 E-value=17 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+..|+.|..|+.+...|..++..-+.++..+
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344555555544444444444333333333
No 266
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=58.95 E-value=14 Score=34.43 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
++++|+++..|+....++.+........+..++.....|...
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444554444444444444444433334443333333333
No 267
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=58.84 E-value=22 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+|..+++.|-.+...|.+|-.+|++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455555555555666666666666544
No 268
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=58.75 E-value=98 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=5.5
Q ss_pred HHHHHHhHHHHHH
Q 018643 262 QKRKQSNRESARR 274 (352)
Q Consensus 262 ~RRk~~NRESARr 274 (352)
++-+++.++++|.
T Consensus 35 ek~~l~~~e~~r~ 47 (169)
T 3k29_A 35 EQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 269
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.46 E-value=60 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|.--...||.+|....+-...|+.++.-+...+.+|.
T Consensus 19 I~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 19 IFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3334444455556666665556666666665555555553
No 270
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.18 E-value=41 Score=34.64 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
++.+|++++++++|..+-.+-+.++++...
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766665555555554433
No 271
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.60 E-value=4.5 Score=37.53 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+..|.+||++|++|+..|+.+..
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666644433
No 272
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.51 E-value=75 Score=26.25 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNS 320 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~ 320 (352)
.|..|..++..++.+...
T Consensus 85 ~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 273
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=56.72 E-value=94 Score=28.33 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 295 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~ 295 (352)
++...+.-+-+..|+-|-+...++++.++.|..++...-.
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~ 138 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAG 138 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788899999999999999888888777664433
No 274
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=56.71 E-value=24 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|..+++.|-.+...|.+|..+|++-|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555666666666667777777766553
No 275
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.48 E-value=58 Score=30.22 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++..++.+++.++.+...++.+|..
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443333
No 276
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=56.48 E-value=13 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018643 306 RLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..+..+.+.||-+|..++..|
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444455555555444444
No 277
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=56.36 E-value=20 Score=27.49 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+.+.+..+++.|+.|-.-.-.+|..+..-|+....++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444455555555555544445555555555555555444444443
No 278
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.28 E-value=8.8 Score=39.59 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..+|++++..++.+......+|.+..+....|..+.....++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567777788777777776666665555544444444444333
No 279
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.23 E-value=25 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+|-++++.+..|.+.-+++|..|+.....|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 280
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.10 E-value=71 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
.++.++||+++.-|+.....--..|..|+.-++.++.+..+|..-|
T Consensus 110 ~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 110 GHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888877777555433666666666666666666665443
No 281
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=56.06 E-value=14 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..+++.|.+++..|+.|+.+|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666555544
No 282
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.96 E-value=83 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTS-------ENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~-------EN~~Lk~~L~~l 328 (352)
+.|++.+.+|.+.|..|.++.-.|+. |...|+.++.+|
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34556666666666666665555544 444555555554
No 283
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.79 E-value=73 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
...|..+++.+..++..|..+...|..++.++. ..+..+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk--~~l~~~~ 111 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELT--AQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344666677777777777777777777777765 4444333
No 284
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.57 E-value=15 Score=29.17 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+.|+.++..|+.+...|..++..+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666654
No 285
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=55.26 E-value=51 Score=27.93 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.+|+...+.|+.++..++.+...|
T Consensus 60 ~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 286
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=55.19 E-value=55 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
+-.+.|..+|..|+..|..+.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33466777888888888777777777743
No 287
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=55.09 E-value=22 Score=32.03 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~ 309 (352)
++..|+++|..|++|.++|.+
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 288
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=55.04 E-value=63 Score=24.83 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+|..++..-+.|...|..-+..|+.++.....=|..|..++.-+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~ 50 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNL 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555544443
No 289
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.53 E-value=31 Score=34.40 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
+..++.+++..|+........+|..|+..+..+......|+.+|..|..
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555666666666666667777777777777777777777777653
No 290
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.22 E-value=41 Score=27.47 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
+.|+++++.|+.....|...+..++.++..+..+.+++.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666666665555555544
No 291
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=54.22 E-value=45 Score=26.91 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKL 314 (352)
Q Consensus 300 Lr~el~~L~~e~~~L 314 (352)
|+.+++.|.++++.|
T Consensus 54 L~Rk~DKl~~ele~l 68 (93)
T 3sjb_C 54 NNRKLDSLDKEINNL 68 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 292
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.03 E-value=1.3e+02 Score=30.40 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhHHHH
Q 018643 258 ELKRQKRKQSNRESA 272 (352)
Q Consensus 258 e~KR~RRk~~NRESA 272 (352)
+++..-..+.|+.+.
T Consensus 104 eLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhH
Confidence 333333444554443
No 293
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.85 E-value=27 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.|.+++.++-+|++..+.+...|+.++..|.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888888877774
No 294
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=53.34 E-value=38 Score=22.30 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.++..|+++...|.-....|++++..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777777665
No 295
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.02 E-value=45 Score=27.01 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+|+.++..|+.+...| +.+..+...|+.+-..|..+|..+
T Consensus 50 ~eL~~EI~~L~~eI~~L----E~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQL----EKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45556666666655433 333344455566556666666554
No 296
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.81 E-value=92 Score=25.31 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.|+.+...=..+|..|+..++.+..++..|..+|..+.
T Consensus 56 le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 56 LESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444344444455555566666666666555543
No 297
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.74 E-value=52 Score=25.47 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRN------LRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~------Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..|+.|+.++..|+.+... =..++..|..++..+..+...+.++=..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888876643 12456666666666766666666554444
No 298
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.57 E-value=51 Score=29.89 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|++++..|+.+|..|..++..|..+++++
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333333333333
No 299
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.36 E-value=7.8 Score=32.26 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777778899999999998865
No 300
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=51.98 E-value=52 Score=23.52 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.+.+.-+.....|..+|..|..++..-+.++..+.++|.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444555555555555555555444444444444443
No 301
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.60 E-value=7.9 Score=28.26 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr 301 (352)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788888877776665543
No 302
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=51.36 E-value=64 Score=25.91 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKL----TSENNSIKEDLSRLC 329 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L----~~EN~~Lk~~L~~l~ 329 (352)
++.+.++..--.|...+|..|-.|.....++ +.|..+||.+|....
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555555666666666666655544 357788888877653
No 303
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.71 E-value=1e+02 Score=31.32 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=15.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 301 RDE-LQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 301 r~e-l~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+ ...|+.++..|+.+...|.++|..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5555555566666666665555544
No 304
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=50.64 E-value=45 Score=25.80 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
.++..|++.+..-...-+.|-.+|-.|.-|..-|......
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 3444444444333333333444444444444444433333
No 305
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=50.63 E-value=43 Score=27.49 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 321 (352)
++.|.+|..++..|++|--.|..++..-.-++..|+.....|
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 366778888888888888888888888888888888877776
No 306
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=50.62 E-value=90 Score=29.08 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 280 QAECEELQARVETLSNENR----NLRDE-LQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~----~Lr~e-l~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
..++++++.++..|..-.. .++++ +...++.+..|+.|+..-+.+|...+-....+
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a 97 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQA 97 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4556677777776666442 23333 34456666667777777666666665443333
No 307
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=50.58 E-value=1e+02 Score=25.08 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..+...++.|.+++..-..|...|+..++.+......|...+..|..+...|.
T Consensus 50 ~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 50 QEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888887778888888888888888888888777777776665
No 308
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.47 E-value=13 Score=28.32 Aligned_cols=15 Identities=0% Similarity=0.149 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 307 LSEECEKLTSENNSI 321 (352)
Q Consensus 307 L~~e~~~L~~EN~~L 321 (352)
|+.+.+.|..++..|
T Consensus 62 L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 62 MRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 309
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=50.38 E-value=69 Score=23.19 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+..+..|+.++..++.+.+....+...|-.-...|..|...-+.-|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45678888899999999888888888888888888888888776654
No 310
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=50.12 E-value=41 Score=29.48 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARV 290 (352)
Q Consensus 277 ~RKq~~~eeLe~kv 290 (352)
++|++++.+|..+.
T Consensus 22 ~~K~~~LqeL~~Q~ 35 (155)
T 2aze_A 22 KQKQSQLQELILQQ 35 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555433
No 311
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=49.62 E-value=36 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|+.++..|+++..+ ...|+..|..|..+|.+|+
T Consensus 44 Lq~e~~r~~e~e~r----~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 44 LQREQQRAKDLENR----QKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHH
Confidence 34444444443333 3667888888888887775
No 312
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=49.59 E-value=63 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLS 294 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le 294 (352)
.+|+--.+....+++.|+
T Consensus 140 ~~KllDYD~~~~k~~kL~ 157 (243)
T 4a3a_A 140 SRKLVDYDSARHHLEALQ 157 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 444444455555555444
No 313
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.73 E-value=1.3e+02 Score=25.91 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 018643 309 EECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 309 ~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
..++.|..||..++++|...+.+
T Consensus 140 dSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 140 DSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhhhHhHHHHHHHHHHh
Confidence 34568889999999999887643
No 314
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=48.67 E-value=1.3e+02 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
.+++|..|+.++..|-.+|..-+.++..+..+...
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333
No 315
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=48.33 E-value=37 Score=28.54 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
|+++++.|+.....|...+..++.++..++....+|.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 316
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.22 E-value=51 Score=33.75 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
+.+++.+-..+++||+.++++....+..++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666665555544443
No 317
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=48.19 E-value=1.8e+02 Score=27.39 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 269 RESARRSRLRKQAECEELQAR-------------------VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 269 RESARrSR~RKq~~~eeLe~k-------------------v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
=.++++++.+=...++++++- ++.-.+.-++|+.+++.....+.....+-..++.+|....
T Consensus 132 e~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk 211 (279)
T 3qwe_A 132 VQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAK 211 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888741 1112223344778888888888888888888888887753
Q ss_pred Ccchhhchh
Q 018643 330 GPEAVANLE 338 (352)
Q Consensus 330 g~~~~~~L~ 338 (352)
+..|+.|.
T Consensus 212 -~~~v~~Lr 219 (279)
T 3qwe_A 212 -QRIVSHVR 219 (279)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 55555443
No 318
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=48.18 E-value=61 Score=26.15 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.++|+.-+..|+.+|..-...|..|+..+..
T Consensus 27 k~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 27 KDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777776666666555555443
No 319
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=48.13 E-value=16 Score=29.77 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhchhhcCCC
Q 018643 305 QRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 343 (352)
Q Consensus 305 ~~L~~e~~~L~~EN~~Lk~~L~~l~g-~~~~~~L~~~~~~ 343 (352)
..|+.++..|+.|...|+++|..|.. +..+.++...++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILED 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecC
Confidence 33444445555555555555655554 4555666555543
No 320
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=47.97 E-value=37 Score=31.93 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
++++..+..+..+...|..++..|+.++..|..+
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444444444433
No 321
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=47.92 E-value=44 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
.||.+-+++| ..|+.+...|+.++
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444444443 45666677776665
No 322
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=47.90 E-value=34 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
.++++.|+++.+.|+.|.++|..++..++....
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~ 216 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANA 216 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 457888888888888888888877777766533
No 323
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=47.80 E-value=1.2e+02 Score=27.88 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++...+.++..++.+...++.+|..+
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 324
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.68 E-value=1e+02 Score=24.23 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 279 KQAECEELQARVETLSN-------------------ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~-------------------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
-+.+++.|+..+..|+. .......++..++.++..|..+...|..++..|.
T Consensus 29 l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666643 2344556666777777777777777777776665
No 325
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=47.45 E-value=79 Score=29.33 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHhHHHH-HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 264 RKQSNRESA-RRSRLRKQAEC----------------EELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 264 Rk~~NRESA-RrSR~RKq~~~----------------eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+-++|||.. +.+|.||+.-. ..|++++..++.++.....+|..++++
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 346677654 55555554333 344444444444454444455555444
No 326
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=47.26 E-value=39 Score=31.39 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
++.|-.+|+.+++....|..+++.+.+..+..+.....|.+.|.+|...-.-.||.
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIR 56 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLR 56 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccee
Confidence 35666777777777777777777777777777777777777777775433333433
No 327
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=47.22 E-value=22 Score=34.35 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
|+.+++.|++++..|+.....|+..|
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444
No 328
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=47.14 E-value=57 Score=31.62 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLR 301 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr 301 (352)
+|+++|+.+++.|+.+...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666664
No 329
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=47.02 E-value=87 Score=25.11 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 018643 310 ECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..+......|+.++.++.
T Consensus 63 ~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 330
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=47.01 E-value=1.4e+02 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 335 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~ 335 (352)
++..+..+..++..|+.++..|.+++.+|.....|+
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIs 113 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS 113 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 334444455555566666666777766665444443
No 331
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=46.94 E-value=41 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
+++++|..++.+|.++...+|++..+
T Consensus 73 ~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 73 AKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 332
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=46.87 E-value=1.2e+02 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 308 SEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
+.+++.|+.|...|..+|.+...+.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777765333
No 333
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=46.77 E-value=34 Score=23.13 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+.|...++....|+..|+.+...|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444444444444444433
No 334
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.72 E-value=21 Score=35.42 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhchhhcCC
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNP 342 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~-~~~~~L~~~~~ 342 (352)
.+++++.++..+.+... +|+.+...|..+...|++++..|+.. ..+..+...++
T Consensus 26 ~i~~~~~~~~~~~~~~~-------~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~ 80 (405)
T 4b4t_J 26 KIQETELKIRSKTENVR-------RLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVS 80 (405)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 44455555544444333 34444445555556666666666543 33444444443
No 335
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.49 E-value=67 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L 307 (352)
.|..+|..|++||..|+.-++.=
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 336
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=46.28 E-value=55 Score=31.00 Aligned_cols=53 Identities=11% Similarity=0.287 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 274 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 274 rSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
....--..++.+|..+|..++.+..++.+.++++...+..|+.|..+++..|+
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444566778888888888888888888888888888888888888775443
No 337
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.18 E-value=75 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECE 312 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~ 312 (352)
|+.+++.|+++...|...+..|...+.
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333
No 338
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=45.81 E-value=37 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+.|+.+...|+...+.|..+++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444444433
No 339
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.73 E-value=21 Score=35.66 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++..++.++..|+.+...++++|+.|.
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 73 QLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444445555555554
No 340
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.31 E-value=44 Score=28.06 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++..|+.||.....++ .....|...|..+|..
T Consensus 92 ~ri~~L~~E~~~~~~el-------~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEK-------IEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34444555554444444 4444444444444443
No 341
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.24 E-value=42 Score=28.94 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+++..|+.||.....++...-++.+.|
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~l 118 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444433333333
No 342
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.17 E-value=11 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQ 305 (352)
Q Consensus 292 ~Le~EN~~Lr~el~ 305 (352)
.|++....|++++.
T Consensus 11 aleqkiaalkqkia 24 (28)
T 3ra3_A 11 ALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 343
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=45.09 E-value=1e+02 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhc
Q 018643 306 RLSEECEKLTSENNS-IKEDLSRLC 329 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~-Lk~~L~~l~ 329 (352)
.+..++..-+.+... |+.+|++|.
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555566666 666666653
No 344
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.06 E-value=47 Score=28.46 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 018643 309 EECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 309 ~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.+...++..|..|+++|.+-.
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665543
No 345
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=44.61 E-value=71 Score=29.96 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEE 310 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e 310 (352)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 346
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.38 E-value=8.5 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 295 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.||..|..-+.+|+.....|+.....|...|..|
T Consensus 17 kenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4666666666555555555554444444444333
No 347
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=44.37 E-value=4.7 Score=32.71 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..+..|.-.|+.+|..|..+++.++.||..|++-
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777754
No 348
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.17 E-value=98 Score=23.14 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|.+|...|+.+|..|+.|+..|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhh
Confidence 3333334444444444444333
No 349
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.05 E-value=69 Score=25.80 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 306 RLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 306 ~L~~e~~~L~~EN~~Lk~~L 325 (352)
.|++++.+|..|...|...|
T Consensus 53 KL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 350
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.98 E-value=20 Score=29.14 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRL 307 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L 307 (352)
+|+.+...|+.++..|
T Consensus 11 ~l~~~~~~l~~~i~~l 26 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHL 26 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 351
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=43.88 E-value=56 Score=27.82 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcC
Q 018643 291 ETLSNENRNLRDELQRLSEECEKL-------TSENNSIKEDLSRLCG 330 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L-------~~EN~~Lk~~L~~l~g 330 (352)
+.|+..+.+|...|..|.++.-.| .-|...|+.++.+|.|
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 344555555555555555544333 3456666666666665
No 352
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.76 E-value=36 Score=29.49 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+..||+++..++.....+..+|..|+.+++.|+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666666666666655555553
No 353
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=43.43 E-value=96 Score=22.83 Aligned_cols=43 Identities=33% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 258 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 258 e~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
|+||-|-+..-|.+-.++|.-=|.|.+-...+. .||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks----~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKS----SENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHH
Confidence 678888889999999999988888888777654 4676665443
No 354
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=43.40 E-value=43 Score=22.33 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 301 RDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+..-..|..+.+.|+..+..|+.+|..+
T Consensus 6 q~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 6 QAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555556666666666666544
No 355
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.21 E-value=37 Score=33.56 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCCC
Q 018643 307 LSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 343 (352)
Q Consensus 307 L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~ 343 (352)
|..+...|..+...|.+++.++. +.+..+...++.
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 107 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVE--EELKNTLLWIPN 107 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 34455556666666666666665 555555555555
No 356
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.19 E-value=41 Score=29.85 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|...-..|+..+..|+++...|..+...|++
T Consensus 54 l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 54 IAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444
No 357
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=43.16 E-value=36 Score=27.47 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVE-TLSNENRNLRDELQRLSE--ECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~-~Le~EN~~Lr~el~~L~~--e~~~L~~EN~~Lk~~L~~ 327 (352)
.+|+.+|+ .|...+..|..++..|.. ..+.|..+-..|...+..
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~ 82 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQS 82 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 45556666 666666666665553333 334444444444444433
No 358
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=42.70 E-value=41 Score=26.26 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCcchhhchhhcC
Q 018643 320 SIKEDLSRLCGPEAVANLEQSN 341 (352)
Q Consensus 320 ~Lk~~L~~l~g~~~~~~L~~~~ 341 (352)
.|.-+|++++..+....+..++
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il 65 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAIL 65 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 5555566665555444444433
No 359
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.69 E-value=39 Score=33.50 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
.+.+..|+.+...|..++..+++++
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444433
No 360
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=42.58 E-value=94 Score=22.49 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
..|+.++..++.....|..++..+.-+.+.+..++
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~ 42 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVERVAMTAEACSRQH 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444444443333
No 361
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.33 E-value=94 Score=27.37 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEK 313 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~ 313 (352)
....|.+|+..|+.++..
T Consensus 114 kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444333
No 362
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.11 E-value=1.9e+02 Score=29.88 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 018643 320 SIKEDLSRL 328 (352)
Q Consensus 320 ~Lk~~L~~l 328 (352)
.|..+|.+|
T Consensus 571 ~~~~ei~~l 579 (592)
T 1f5n_A 571 IMKNEIQDL 579 (592)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 363
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.07 E-value=39 Score=28.46 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018643 291 ETLSNENRNLRDELQRL 307 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L 307 (352)
..++.|.+.|..+|.+|
T Consensus 39 ~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 39 AELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344444333
No 364
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=41.95 E-value=90 Score=26.89 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 018643 281 AECEELQARVE 291 (352)
Q Consensus 281 ~~~eeLe~kv~ 291 (352)
+|+..|+.+++
T Consensus 86 eYn~rL~~E~~ 96 (152)
T 4fla_A 86 EYNGRLAAELE 96 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 365
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=41.87 E-value=43 Score=27.21 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+.++..|+.+-..|-..+..+++.+..|.
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333
No 366
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=41.54 E-value=88 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|+..+.....+|..|-.++..|+-++..|...-.....+|...
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555666666666666666666666666666665543
No 367
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.65 E-value=1.6e+02 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
..+.|+.....|..++..|+.....|..
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 368
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=40.32 E-value=1.4e+02 Score=23.72 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETLSNENRNLRDEL--------QRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el--------~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
++.|.+.+..++..+.-..+|.-|+ ..+..++...+.+...|+.+++.+.
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555554444444444333 2344455555555566666665554
No 369
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.04 E-value=29 Score=34.63 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 294 SNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 294 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
+.+...++.++..|+++...++.|...|+
T Consensus 71 e~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 71 DDQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444445555555555666655554
No 370
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=39.46 E-value=86 Score=32.69 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+..+..|+.+...++.++..++.+.+.|+.....++.+|.+
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555544444444444443
No 371
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=38.82 E-value=1.5e+02 Score=23.84 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555566666666655554444444555555555555555555444443
No 372
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.55 E-value=71 Score=29.62 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 292 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 292 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
..+.+...++.++..++.++..++.+...++..|..
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555556666666666666666666665543
No 373
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=38.53 E-value=78 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCcchhhchhhc
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-----EDLSRLCGPEAVANLEQS 340 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk-----~~L~~l~g~~~~~~L~~~ 340 (352)
.+.+|..++..|+.|...-..=-...-+-++.|..+...|+ ++++.+-+...++++.+.
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34455555555555443322211222222345555555555 466667666667666554
No 374
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=38.35 E-value=76 Score=23.96 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018643 300 LRDELQRLSEE 310 (352)
Q Consensus 300 Lr~el~~L~~e 310 (352)
|+.++..|..+
T Consensus 37 L~Rk~DKl~~e 47 (65)
T 3sja_C 37 NNRKLDSLDKE 47 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 375
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=38.17 E-value=83 Score=27.88 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++|..-...|+.+...|..+...|..++..|..+...+.+.+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666777777677766555554443
No 376
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=37.93 E-value=81 Score=26.41 Aligned_cols=33 Identities=6% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.|+.+++.|+.....|+.++..+...+++|..
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666543
No 377
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.87 E-value=2e+02 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 298 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
..|+..+...+.....++.+...|++++..|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 33444444455555555555555555555554
No 378
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.68 E-value=54 Score=29.21 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
+.+.+++.||.++...+.++..+..++
T Consensus 139 kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 139 KNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444443
No 379
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.65 E-value=52 Score=22.40 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 298 RNLRDELQRLSEECE 312 (352)
Q Consensus 298 ~~Lr~el~~L~~e~~ 312 (352)
..|+.++..|+++..
T Consensus 18 ~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 18 LKLEEKLLALQEEKH 32 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334433333333
No 380
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=37.61 E-value=21 Score=30.47 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=3.9
Q ss_pred CCCCCCcc
Q 018643 198 SVPGKPVV 205 (352)
Q Consensus 198 s~~g~~~~ 205 (352)
.+.|.+|.
T Consensus 33 ~v~GrpV~ 40 (140)
T 3iyn_Q 33 SIDGRPVL 40 (140)
T ss_dssp CTTCSSCC
T ss_pred CCCCCccC
Confidence 34555553
No 381
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.37 E-value=54 Score=29.50 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el 304 (352)
...+.+|+++...|+.||+.|..+-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777777777777776653
No 382
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=37.08 E-value=22 Score=28.93 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
..|+..+++|.+++..++ ..+..|+.++...+.....-+..-..|..+
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~E 84 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEK 84 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666555 445556666666666665555444444333
No 383
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.03 E-value=1.7e+02 Score=24.01 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018643 296 ENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 296 EN~~Lr~el~~L~~e~~~L 314 (352)
+...|+.+|..|++.+..+
T Consensus 83 ~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 384
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=36.80 E-value=32 Score=26.28 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+|..+|..|+....... ++..|+.+...|+.|...|..+...
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555554433233 6666666666666666666555443
No 385
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=36.73 E-value=13 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+|+.+.+..+.++.++..|+.++.
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444443
No 386
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.43 E-value=46 Score=23.19 Aligned_cols=8 Identities=0% Similarity=0.277 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018643 299 NLRDELQR 306 (352)
Q Consensus 299 ~Lr~el~~ 306 (352)
.|.++|..
T Consensus 20 ~LE~Ri~~ 27 (43)
T 2pnv_A 20 DFEKRIVT 27 (43)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 387
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=36.06 E-value=87 Score=26.03 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQR 306 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~ 306 (352)
+++.+|+.+|+.++..+..|++-...
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776666666666554433
No 388
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=36.06 E-value=66 Score=25.23 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++.+|...++.|+.|-.-.-.+|..+.--|+....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34566666777777776666666666655565555454444445444
No 389
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=35.98 E-value=78 Score=23.99 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETL 293 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~L 293 (352)
|+.+|+....++.|+-|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566677777777877777777788887666543
No 390
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.94 E-value=10 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~ 305 (352)
.|..++..|+.++..+..++.
T Consensus 8 avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 391
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=35.93 E-value=2.4e+02 Score=25.22 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 259 LKRQKRKQSNRESARRSRLRKQAEC-EELQARVETLSNENRNLRDEL---QRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 259 ~KR~RRk~~NRESARrSR~RKq~~~-eeLe~kv~~Le~EN~~Lr~el---~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
.-+.--++.|+.+...-|..|-.++ +....-+..-+.-+..|...+ ......+..|+....++..+|..|...
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~ 146 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPE 146 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344445666666666666666555 112223333333333344333 334556667777777777777776543
No 392
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=35.60 E-value=7.7 Score=29.56 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 299 NLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 299 ~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
.|+.++..|+=.++.|+..|.+|+.+|.
T Consensus 52 alkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 52 ALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp TTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 3777888888888888888888887764
No 393
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=35.52 E-value=1.4e+02 Score=25.31 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++.|.+|-.++..|+.|--.|..++..-..++..|+.....|+...
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 5677888888999999998999999888889999998888886543
No 394
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=35.45 E-value=41 Score=27.16 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 309 EECEKLTSENNSIKE 323 (352)
Q Consensus 309 ~e~~~L~~EN~~Lk~ 323 (352)
+++..|..|...|+.
T Consensus 63 Rk~DKl~~ele~l~~ 77 (94)
T 3vlc_E 63 RKLDSLDKEINNLKD 77 (94)
T ss_dssp HHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 395
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=35.18 E-value=1.2e+02 Score=24.46 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
.++-.+|..++..-+.+...-+..+..|++.++.|+.|.
T Consensus 56 lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 56 LAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666666666666666666665555555543
No 396
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.91 E-value=2e+02 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 275 SRLRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 275 SR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
--.+|++-.-+++++++.++.+-..|.++++
T Consensus 55 HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 55 FEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666667777666666555554443
No 397
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=34.87 E-value=2.7e+02 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 265 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 265 k~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
++-|-|-|---|+|+ ++.+...++..++.....|+..+..+..+.
T Consensus 342 ki~naevae~~~lrQ--RlddArNEItsaeSaInslqaqvSa~t~e~ 386 (602)
T 1cii_A 342 KIYNAEVAEWDKLRQ--RLLDARNKITSAESAVNSARNNLSARTNEQ 386 (602)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555552 245545555555544444444444444333
No 398
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=34.77 E-value=2.8e+02 Score=25.69 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L 307 (352)
+.+.+....++..+|...-.+...++.++..+
T Consensus 346 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 377 (446)
T 3pik_A 346 VVNYEQKIQNAFKEVADALALRQSLNDQISAQ 377 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555433
No 399
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=34.65 E-value=39 Score=31.45 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 253 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 253 ~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
...-|++.+.+.++.-+..+.-+..-|++++.+|++++..|+.+...|.
T Consensus 263 y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 263 LVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp GHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444455566666666666666665554443
No 400
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.43 E-value=90 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcc
Q 018643 312 EKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 312 ~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
..-..++..|+.+|..+.+.+
T Consensus 43 ~~aV~~Ll~LKa~l~~~tg~~ 63 (79)
T 2djv_A 43 AAEVAKLLDLKKQLAVAEGKP 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHhcCCC
Confidence 344455667777777776644
No 401
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=34.43 E-value=88 Score=27.94 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcC
Q 018643 316 SENNSIKEDLSRLCG 330 (352)
Q Consensus 316 ~EN~~Lk~~L~~l~g 330 (352)
-|...|+.++.+|.|
T Consensus 93 yEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 93 TEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHh
Confidence 345555555555544
No 402
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.96 E-value=1.1e+02 Score=20.97 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNL 300 (352)
Q Consensus 287 e~kv~~Le~EN~~L 300 (352)
..-++.|+..|.+|
T Consensus 9 knyiqeleernael 22 (46)
T 3he4_B 9 KNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 33333344444433
No 403
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.62 E-value=1.5e+02 Score=22.16 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|..-|=.|..|..+|+.+...++.-++.-...+.+|..-|.++
T Consensus 5 LVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666665555555555555555544
No 404
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.82 E-value=1.7e+02 Score=31.00 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNEN 297 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN 297 (352)
-..+++|++++..|+.|.
T Consensus 400 p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 455666666666555543
No 405
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=32.63 E-value=50 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENR 298 (352)
Q Consensus 284 eeLe~kv~~Le~EN~ 298 (352)
..|+.+++.|+.+..
T Consensus 7 ~~l~~~~~~l~~~l~ 21 (149)
T 1rtm_1 7 ANMEAEINTLKSKLE 21 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 406
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.33 E-value=65 Score=24.42 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 018643 314 LTSENNSIKEDLSRL 328 (352)
Q Consensus 314 L~~EN~~Lk~~L~~l 328 (352)
-..|+.+|+.+|.++
T Consensus 37 kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 37 KEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 407
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=31.96 E-value=1.7e+02 Score=26.14 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhch
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 337 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L 337 (352)
-..=|+.+.+.|..|-..|..++..++++...+..+-...-.......|.+.+..+
T Consensus 32 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~ 87 (217)
T 3aon_A 32 GHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDEL 87 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 34556777777777778888888888887787777766666666666665444433
No 408
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=31.87 E-value=99 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
....+......+..-+..+...|..
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 409
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=31.81 E-value=2.2e+02 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.|-.++..+..++..++.++..+-++......
T Consensus 41 d~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~ 73 (217)
T 3aon_A 41 DELMRQFILLIRKNNELRQAIEKETQTAMKDFV 73 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777788888777776555444433
No 410
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.71 E-value=25 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
+..+++.|+.+|..||.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888887776655543
No 411
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.70 E-value=1.7e+02 Score=22.36 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
+|-.+-+++-..-.+...++.+|..|.
T Consensus 39 ~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 39 RIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666666666654
No 412
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.35 E-value=1.8e+02 Score=22.36 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
...|..+++.+..++..|..+...|..++.++.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666666666666654
No 413
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=31.25 E-value=95 Score=26.03 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.++|+++++.|+.....-...+..|+..+..-..|..+|.
T Consensus 24 sedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLE 63 (119)
T 1lwu_A 24 LRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVE 63 (119)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555555555555555555555554444444444
No 414
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=31.23 E-value=69 Score=24.37 Aligned_cols=48 Identities=6% Similarity=0.234 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++..|..+-..|..++..|........ ++..|+.+--.||.+|..+-
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHH
Confidence 3445555566666666555555443333 67777777777777776654
No 415
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=31.17 E-value=1.4e+02 Score=25.16 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018643 287 QARVET 292 (352)
Q Consensus 287 e~kv~~ 292 (352)
|.+|+.
T Consensus 20 ~~~~~~ 25 (125)
T 4g2k_A 20 EDKIEE 25 (125)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 416
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.87 E-value=2.8e+02 Score=28.32 Aligned_cols=18 Identities=0% Similarity=0.112 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHhHHH
Q 018643 254 QDERELKRQKRKQSNRES 271 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRES 271 (352)
.-|+..+..-.+++|+..
T Consensus 58 kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 345555555556666653
No 417
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=30.84 E-value=2e+02 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.+.++++-++|+ -|+.+.+.|+++|.+
T Consensus 224 v~~~~~k~Qrey-~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 224 VKKQMEKSQREY-YLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 555555555554 366666667766653
No 418
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.83 E-value=2.2e+02 Score=23.21 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|.+|..++..|++|--.|..++.. -.-|...|+.++.+|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~k-------q~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQ-------QKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHh-------hhHHHHHHHHHHHHh
Confidence 44455555555555555555555544 444445555555554
No 419
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=30.58 E-value=2.2e+02 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENR 298 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~ 298 (352)
.+|..|+-+...+..|..
T Consensus 43 ~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 43 QQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566655555555444
No 420
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.96 E-value=31 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
|+.+++.|.++++.|..+...-+.
T Consensus 61 L~Rk~DKl~~ele~l~~~L~s~ks 84 (94)
T 3vlc_E 61 NNRKLDSLDKEINNLKDEIQSENK 84 (94)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444443333
No 421
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=29.87 E-value=84 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.4
Q ss_pred CchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCcccc
Q 018643 29 ADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWG 64 (352)
Q Consensus 29 pdW~~~mQAYy~~~~~pp~y~~s~va~~~phPYmWg 64 (352)
.||.=|=|-|.| ++.|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG--~pIP~w~~~~----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWG--HQIPAWYCED----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSS--CCCCCEEETT----TCCEECCC
T ss_pred cceeEecccCCC--cccCceecCC----CCEEEEec
Confidence 688755598887 3456676641 12456764
No 422
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.77 E-value=31 Score=28.39 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSN 295 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~ 295 (352)
+|+..|+.+++.|+.
T Consensus 74 eYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 74 DYIRKLQREQQRAKD 88 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556555555544
No 423
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=29.51 E-value=1.1e+02 Score=26.79 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 295 NENRNLRDELQRLSEECEKLTSEN 318 (352)
Q Consensus 295 ~EN~~Lr~el~~L~~e~~~L~~EN 318 (352)
.|...++.+|..-++++++|..+.
T Consensus 12 ~Ek~~~~~rI~~K~~~LqeL~~Q~ 35 (155)
T 2aze_A 12 VERQRRLERIKQKQSQLQELILQQ 35 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 424
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.48 E-value=1.5e+02 Score=20.87 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDEL 304 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el 304 (352)
++.|+..++.|+..-..|..+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~ 28 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEY 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 425
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.40 E-value=2e+02 Score=22.28 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
...++.+...|++-+..+.-....|+.+...|+++|.=|
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666677777666544
No 426
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.02 E-value=78 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018643 300 LRDELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 300 Lr~el~~L~~e~~~L~~EN~~L 321 (352)
.+.+|..|+.+++.|+.|..+|
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665554
No 427
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=28.88 E-value=83 Score=30.26 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018643 293 LSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~ 311 (352)
|+.+.+.|+++|..|+.++
T Consensus 33 Lq~~le~L~~KI~~LE~~v 51 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAI 51 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333
No 428
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=28.70 E-value=1.5e+02 Score=20.83 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
+..-|.+||.+|+.-......+++.+-.+++.
T Consensus 8 eF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~ 39 (45)
T 4gif_A 8 EFYMLTRRVLQLETVLEGVVSQIDAVGSKLKM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444433
No 429
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.66 E-value=1.3e+02 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 288 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 288 ~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
.++..|+.|...|..+-..|-+.+..+....+.|.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554444444444444444444
No 430
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.62 E-value=2e+02 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQ 305 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~ 305 (352)
+.+|.+-++.|.+++..|++|-+.|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888777777653
No 431
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.57 E-value=1.6e+02 Score=28.73 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 018643 316 SENNSIKEDLSRL 328 (352)
Q Consensus 316 ~EN~~Lk~~L~~l 328 (352)
.++.+|..++..|
T Consensus 233 ~~~~~~~~~~~~l 245 (373)
T 3hhm_B 233 AEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 3333444444433
No 432
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=28.38 E-value=1.7e+02 Score=26.09 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 323 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 323 (352)
++.|.+|..++..|+.|--.|..++..-.-++..|+.....|+.
T Consensus 64 ~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 46677777777888887777777777777777777777777754
No 433
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=28.27 E-value=2.5e+02 Score=25.40 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.-+-...++++++...|+.+...|...+......+..+..--..+.+.|..+..+.
T Consensus 34 ~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 34 ETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 44677888889999999999999999998888888888877778888888887554
No 434
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=28.20 E-value=2.2e+02 Score=22.33 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
-++.|+.=++.|+.-..+-+.+....+.+...-......+++.|..
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666655566666666554
No 435
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=28.18 E-value=35 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
.||-.+++-|+..+..|+.|...|.
T Consensus 24 ~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 24 AGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888887777777766654
No 436
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.15 E-value=66 Score=25.93 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSE 309 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~ 309 (352)
|.++|..|+.+...|+.+|..|+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555543
No 437
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=27.93 E-value=1.5e+02 Score=23.25 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 255 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 255 DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
|.+++|++-||.+-|....+. .+..|-++.-.=..+|-.+-+++-..-.+...++.+|..+.
T Consensus 16 di~eLkkevkKL~~~A~q~km-------------dLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKM-------------DLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-------------HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666665544443332 22222222222233455555555566666666666666654
No 438
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=27.91 E-value=2.3e+02 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRL 307 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L 307 (352)
+.--+..+.-|..|+.+|..|
T Consensus 189 ~~ak~~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 189 IKAQKVFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555566655555
No 439
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.90 E-value=4.4e+02 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 304 LQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 304 l~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+...+.++..-..+..+....|.++
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 440
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=27.75 E-value=2.3e+02 Score=25.38 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
-...++++++...|+.....|..++......+..+..-...|.+.|..+..+
T Consensus 32 D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~ 83 (237)
T 4avm_A 32 DERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSS 83 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3667778888888888888888888888887777777777777777777654
No 441
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.45 E-value=88 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNL 300 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~L 300 (352)
+.++++++.|.++.+.|
T Consensus 141 ~~l~~~i~~L~~~l~~l 157 (166)
T 3pjs_K 141 EAYTRTTRALHERFDRL 157 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444443333333333
No 442
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.17 E-value=1.4e+02 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 302 DELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.....+......+..-+..+...|...
T Consensus 56 ~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (99)
T 3zbh_A 56 QQYQELRPSFEKMAVLLNEVGQQLHNS 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444443
No 443
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.05 E-value=2.7e+02 Score=26.75 Aligned_cols=6 Identities=50% Similarity=0.534 Sum_probs=2.1
Q ss_pred HHHHHH
Q 018643 286 LQARVE 291 (352)
Q Consensus 286 Le~kv~ 291 (352)
|+.+++
T Consensus 229 L~~ere 234 (302)
T 3ibp_A 229 LHAERE 234 (302)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 444
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=26.98 E-value=1e+02 Score=28.18 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~ 329 (352)
.++++++.++..|..- .=+.-+...++.+..|+.|+..-+.+|...+
T Consensus 43 kEW~eae~q~k~l~ka--dkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH 89 (211)
T 3umh_A 43 REWEEAERQAKNLPKA--DKKAVIQHFQEKVESLEQEAANERQQLVETH 89 (211)
T ss_dssp HHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445555544444331 1111233344444455555555555554444
No 445
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.76 E-value=1.3e+02 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 293 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 293 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.+.-...|+..++.++.+++.|+.....|++.|..-
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~p 196 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTP 196 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSB
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 444556677777777777777777777777776543
No 446
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.65 E-value=72 Score=28.45 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 286 LQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 286 Le~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
|+..+..+......++.+|..|++++..|
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~~l 69 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQVL 69 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555554444433
No 447
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.46 E-value=1.9e+02 Score=28.80 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018643 289 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 330 (352)
Q Consensus 289 kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g 330 (352)
++..|+..+.....+|..|+..+.........|+..+..|..
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555566666666666666666666666543
No 448
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=26.42 E-value=2e+02 Score=25.86 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 332 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~ 332 (352)
.=|+.+.+.|..|-..|..++..++++...+..+-...-.......|.+
T Consensus 26 ~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~ 74 (223)
T 3a5c_G 26 DLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPE 74 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Confidence 3355555555555555555555555555555444444443444344433
No 449
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.35 E-value=1.3e+02 Score=23.34 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQRLS 308 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~L~ 308 (352)
+.++.|+..++.|+..-..|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666654443
No 450
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=26.22 E-value=1.5e+02 Score=26.32 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhh
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 339 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~ 339 (352)
++-++..+++-++....+=++++.......-+.+|+.
T Consensus 61 ~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLp 97 (197)
T 1dkg_A 61 GILRVKAEMENLRRRTELDIEKAHKFALEKFINELLP 97 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444333333344444444444444443
No 451
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=26.21 E-value=2.2e+02 Score=25.03 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
.|..++..|..-...|...+......+..|..+...|+-+|..|
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44444444444444444444444444444555555555444444
No 452
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.19 E-value=1.5e+02 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNE 296 (352)
Q Consensus 282 ~~eeLe~kv~~Le~E 296 (352)
.|++|+..|..|...
T Consensus 33 ~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 33 NLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 344444444444443
No 453
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.12 E-value=2e+02 Score=28.36 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSN------ENRNLRDELQRLS 308 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~------EN~~Lr~el~~L~ 308 (352)
.+++.|+.++..+.. |.+.|..++..|+
T Consensus 207 ~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 207 RQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344555555555554 4444444444443
No 454
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.08 E-value=1.9e+02 Score=24.06 Aligned_cols=28 Identities=4% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 301 RDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
..++..|.+++..|......|...|..+
T Consensus 101 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 101 KQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444333
No 455
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=26.03 E-value=1.3e+02 Score=25.42 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018643 298 RNLRDEL 304 (352)
Q Consensus 298 ~~Lr~el 304 (352)
..|..++
T Consensus 148 ~~L~~~l 154 (166)
T 3pjs_K 148 RALHERF 154 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 456
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=25.62 E-value=1e+02 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR 301 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr 301 (352)
-|++...|.|+.-+.-+.-+..-|++++.+|++++..|+.....|.
T Consensus 257 ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (310)
T 3n5l_A 257 IRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAERE 302 (310)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443444555566667777777766665555443
No 457
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.62 E-value=1.3e+02 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018643 310 ECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 310 e~~~L~~EN~~Lk~~L~~ 327 (352)
..+.|+..|-.-+.++..
T Consensus 9 rvqalkarnyaakqkvqa 26 (33)
T 1fmh_B 9 RVQALKARNYAAKQKVQA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 334444444444444433
No 458
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.60 E-value=1.3e+02 Score=22.15 Aligned_cols=33 Identities=6% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
+-+.|+.|+.+-+.|...-...+.....|..+|
T Consensus 30 RGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 30 RGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777777777776666665543
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.52 E-value=55 Score=32.55 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 287 QARVETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 287 e~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+.++..|+.|+..|..++..|++++..++.+...
T Consensus 38 e~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 38 DNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555555555544444444433
No 460
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=25.45 E-value=1e+02 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 301 RDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 301 r~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
......+......+......+...|..
T Consensus 55 ~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 55 RGEFIQSKQAMQQYIPILEGISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 461
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=25.33 E-value=2.9e+02 Score=22.94 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++-.+++.-+..-+..-+....++.+...+|..+|..-..+....+ .....+.++..|..+-..++.+|..
T Consensus 19 q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~-~~~~yk~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 19 QNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA-NTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHH
No 462
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.14 E-value=1.1e+02 Score=25.52 Aligned_cols=35 Identities=9% Similarity=0.240 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~ 324 (352)
.+.|+.....|..++..|+.....|......++..
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 463
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=25.09 E-value=2.3e+02 Score=21.65 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 277 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 277 ~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
+-=+.++++|..=-+.-+.|-.-|..++...+.....|
T Consensus 29 q~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L 66 (70)
T 3brv_B 29 QILRERCEELLHFQASQREEKEFLMCKFQEARKLVERL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444333333333333444444444333333
No 464
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.05 E-value=3.6e+02 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018643 303 ELQRLSEECEKLTSENN 319 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~ 319 (352)
++..++..+..+..|..
T Consensus 138 ~l~KaK~~Y~~~~~e~e 154 (305)
T 2efl_A 138 QLESSKRRFERDCKEAD 154 (305)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 465
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=24.85 E-value=99 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchh
Q 018643 302 DELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 338 (352)
Q Consensus 302 ~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~ 338 (352)
+++..+.++++.|+.+...++.++..+.|...+..|.
T Consensus 15 ~q~~q~~~Ql~~~k~Ql~q~k~qy~sltG~r~~~~~l 51 (213)
T 1r8i_A 15 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGDLL 51 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHh
Confidence 3445555555666666666777777777765555553
No 466
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.73 E-value=2.7e+02 Score=23.63 Aligned_cols=20 Identities=0% Similarity=0.089 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018643 308 SEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 308 ~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++...+......|..+|..
T Consensus 52 k~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555544
No 467
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=24.70 E-value=1.1e+02 Score=20.42 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 018643 297 NRNLRDEL 304 (352)
Q Consensus 297 N~~Lr~el 304 (352)
++.|+.+|
T Consensus 23 ~eqL~~kL 30 (34)
T 1a93_A 23 REQLKHKL 30 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 468
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=24.59 E-value=1.4e+02 Score=19.41 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRLCGP 331 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l~g~ 331 (352)
++..+++++..++.|...++-+|..+...
T Consensus 3 elaaikqelaaikkelaaikfelaaikqg 31 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIKQG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 469
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=24.51 E-value=44 Score=31.95 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 254 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 254 ~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
.|+...|...++...+++.||-|.|=-.++.+|..-|-.-......| .++..|+.-+..|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~ 64 (387)
T 4f3l_B 3 YAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKT 64 (387)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHH
No 470
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.37 E-value=2.6e+02 Score=22.05 Aligned_cols=71 Identities=4% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSR---LRKQAECEELQARVETLSNENRNLRDEL--------QRLSEECEKLTSENNSIKED 324 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR---~RKq~~~eeLe~kv~~Le~EN~~Lr~el--------~~L~~e~~~L~~EN~~Lk~~ 324 (352)
|.+-+-...-+..+...-..- ..|++.+.+++..++..+.-..+|.-|+ ..+..++...+.+...|+.+
T Consensus 21 E~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 21 HEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH
Q 018643 325 LS 326 (352)
Q Consensus 325 L~ 326 (352)
++
T Consensus 101 lk 102 (102)
T 2qyw_A 101 VR 102 (102)
T ss_dssp HC
T ss_pred cC
No 471
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.32 E-value=3.3e+02 Score=27.06 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
+.-.++++-...|=..-.+.-.-=..+++.|+++|..--.....|+.-|+.+..++++|+......+.-|.
T Consensus 95 ~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~ 165 (390)
T 1deq_A 95 ELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCK 165 (390)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 472
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.26 E-value=1.4e+02 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+.+.|+.+.+.|+++...|+.-|..-.....-+..|...|+++.
T Consensus 417 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 473
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=24.14 E-value=77 Score=25.20 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
++|+++++.|+.....-...+..|+.....-..|..+|.--|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDI 44 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 44 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 474
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=24.09 E-value=1.2e+02 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 291 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 291 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.|+.-+..|+..+..|.++...|..+-..|+.+|++.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=24.06 E-value=1.4 Score=39.23 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 280 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
+.+++.|+.++..|+.+...|+.++.++..+++.++....+=++++.+.....-+.+|+..+|
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlD 80 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLD 80 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 476
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=24.01 E-value=1.6e+02 Score=26.09 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 256 Ere~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
+.++...+-.+..-++.-...++..++.+.|-.+=..-+.+....+.++..++.+++.++.+...++..|..+
T Consensus 59 ~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 59 QATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 477
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.98 E-value=2.3e+02 Score=21.13 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhc
Q 018643 280 QAECEELQARVETL---SNENRNLRDELQRLSEECE-----------KLTSENNSIKEDLSRLC 329 (352)
Q Consensus 280 q~~~eeLe~kv~~L---e~EN~~Lr~el~~L~~e~~-----------~L~~EN~~Lk~~L~~l~ 329 (352)
++++..+..+++.| +.|.....++|..+..+++ .|+.|-..++.+|+..+
T Consensus 8 kqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 8 KQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
No 478
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.91 E-value=1.4e+02 Score=19.66 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 303 ELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 303 el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
++..++++...++.|...+++++..+
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaai 28 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAI 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.90 E-value=81 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 297 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 297 N~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|..|...|..|..|++.|......+.+++..+
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=23.87 E-value=1.8e+02 Score=23.10 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhchhhcCC
Q 018643 278 RKQAECEELQARVETLSNENRNL------RDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 342 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~L------r~el~~L~~e~~~L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~ 342 (352)
|...+++.++..++.|.+-...+ ....+.+.+-+..++.--.+|..-|......+.+..|++.+|
T Consensus 10 k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND 80 (103)
T 1wrd_A 10 KLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVND 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhH
No 481
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.86 E-value=1.7e+02 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 284 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 317 (352)
Q Consensus 284 eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~E 317 (352)
++|+.-...+......|...+..|...+..|...
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~ 42 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 482
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.82 E-value=1e+02 Score=26.90 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 280 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 280 q~~~eeLe~kv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
++.+..|+.+++.++.+...|.- +...++...++|+.|..++++.+.+
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
No 483
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=23.80 E-value=17 Score=33.11 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 272 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 313 (352)
Q Consensus 272 ARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~ 313 (352)
.+..++.++++.++.+++.+.+.++..+|++++++|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 240 AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 484
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.65 E-value=2e+02 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 249 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETL 293 (352)
Q Consensus 249 ~~~~~~DEre~KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~L 293 (352)
+.....+|...+|.++.+..-+.+.+.|.++-.+-+.|-.+|+.+
T Consensus 81 P~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=23.46 E-value=1.8e+02 Score=29.82 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 018643 268 NRESARRSRLRK------QAECEELQARVETLSNENRNLRDELQRLSEECEK---------------------------- 313 (352)
Q Consensus 268 NRESARrSR~RK------q~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~---------------------------- 313 (352)
|-+..+++-.|| -.++.+|..+...|+.+.+.|+.+.+.+.+++-+
T Consensus 15 n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (522)
T 3vbb_A 15 DPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADA 94 (522)
T ss_dssp CHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhh
Q ss_pred ---------------HHHHHHHHHHHHHHhcCcchhhchhhcCCC--CCCCcccCC
Q 018643 314 ---------------LTSENNSIKEDLSRLCGPEAVANLEQSNPT--QSCGEEENS 352 (352)
Q Consensus 314 ---------------L~~EN~~Lk~~L~~l~g~~~~~~L~~~~~~--~~~~~~~~~ 352 (352)
|..+...|.+++..+. ..+..+...++. +..+-.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~--~~~~~~l~~iPN~~~~~vP~g~~ 148 (522)
T 3vbb_A 95 LANLKVSQIKKVRLLIDEAILKCDAERIKLE--AERFENLREIGNLLHPSVPISND 148 (522)
T ss_dssp HHTTCSSSHHHHHHHHHHSCCCCHHHHHHHH--HHHHHHGGGSCCCCCTTSCCCSC
T ss_pred hhhhhhHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCCCCCCCCCC
No 486
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.34 E-value=1.1e+02 Score=19.81 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNS 320 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 320 (352)
+..|+++...|..-+..|++....|+.-...
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 487
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=23.29 E-value=3.5e+02 Score=23.15 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHH--HHHHHHHHHHHHHHHHHHh
Q 018643 281 AECEELQARVETLSNENRNLRDELQR---------------------------LSE--ECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~---------------------------L~~--e~~~L~~EN~~Lk~~L~~l 328 (352)
.+-.+|..+|..+..+-..|-.+|.. +.. .|+.|.+.+..||..|...
T Consensus 59 ~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 59 QEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.28 E-value=2.7e+02 Score=21.84 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 018643 281 AECEELQARVETLSNENRNLRDELQR----------LSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 281 ~~~eeLe~kv~~Le~EN~~Lr~el~~----------L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.++++++..+..|+.....|...... ++++++.|..+...+...|..
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~ 68 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
No 489
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.25 E-value=2.4e+02 Score=21.90 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
+++|+..--...++|..|..++...+.++..+..+|..
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 490
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=23.13 E-value=1.5e+02 Score=30.49 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 325 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L 325 (352)
+.++|+.+.+.|+.+...|+.-|..-.....-+..|...|+++.
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~y 498 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKF 498 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc
No 491
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.95 E-value=1.3e+02 Score=26.28 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLT 315 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~ 315 (352)
+..|+.+|+.|+.....-..+|..|++++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.68 E-value=2e+02 Score=20.58 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 276 RLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 311 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~ 311 (352)
|++-....-+...+++.|+.+....+..+..|+.++
T Consensus 2 ree~LeqWv~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 2 REDILEQWVSGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
No 493
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.66 E-value=1.5e+02 Score=20.03 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 278 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 314 (352)
Q Consensus 278 RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L 314 (352)
..|+.+..|-.++...-.....|..+...|..++..|
T Consensus 3 ~EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 3 NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 494
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.59 E-value=1.2e+02 Score=25.64 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 018643 279 KQAECEELQARVETLSNENRNLRDELQRLSEEC-------EKLTSENNSIKEDLSRLC 329 (352)
Q Consensus 279 Kq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~-------~~L~~EN~~Lk~~L~~l~ 329 (352)
+...+++|..+|..|+.+...|..++..+.... ..|.......+++|...+
T Consensus 59 eLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtq 116 (125)
T 2pms_C 59 KLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTE 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
No 495
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=22.37 E-value=4.6e+02 Score=24.17 Aligned_cols=67 Identities=3% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 260 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 326 (352)
Q Consensus 260 KR~RRk~~NRESARrSR~RKq~~~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~ 326 (352)
++..+...-+...+..+...+....++..+|...-.+...++.++..+++.....+......+.+..
T Consensus 326 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~ 392 (442)
T 1yc9_A 326 RLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQ 392 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.35 E-value=72 Score=23.49 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 018643 282 ECEELQARVETLSNENRNLRD--ELQRLSEECEKLTSENNSI 321 (352)
Q Consensus 282 ~~eeLe~kv~~Le~EN~~Lr~--el~~L~~e~~~L~~EN~~L 321 (352)
++++|..+-+.|....++|-- ++..+.++...|+.|...|
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 497
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.30 E-value=2.5e+02 Score=20.96 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 285 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 327 (352)
Q Consensus 285 eLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~ 327 (352)
.|..+|..|+.++..|+.-++.-++....|+.=...+..+..+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 498
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=22.29 E-value=2.6e+02 Score=24.98 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018643 276 RLRKQAECEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 328 (352)
Q Consensus 276 R~RKq~~~eeLe~kv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~~L~~l 328 (352)
|.+|+--.+....+++.|+. +...|.+.-..|...-+....=|..|+++|-.|
T Consensus 134 R~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l 190 (237)
T 4avm_A 134 RGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPIL 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.23 E-value=1.4e+02 Score=25.70 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 290 VETLSNENRNLRDELQRLSEECEKLTSENNSIK 322 (352)
Q Consensus 290 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 322 (352)
+..|+.++..|..++..++.++..|+.+...|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=22.18 E-value=2.1e+02 Score=22.00 Aligned_cols=34 Identities=9% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018643 283 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 316 (352)
Q Consensus 283 ~eeLe~kv~~Le~EN~~Lr~el~~L~~e~~~L~~ 316 (352)
+.-|+..+..+..|...++..|..|+.+++.|+.
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh
Done!