BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018644
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIK-CALRMPQCPFCREEITTRRRVY 351
++ EA C +CCE+E ++ F CGH C + CA ++ CP CR + + VY
Sbjct: 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 335 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 335 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 339 QLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 25 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 302 VAEAQRCCICCEDEKDTAF--ECGHMSCIKCALR-----MPQCPFCREEITTRRRV 350
+AE RC IC E +D C + C C R QCP CR + R V
Sbjct: 19 IAEVFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 28 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 304 EAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351
E + C IC + F CGH+ +C +CA + +CP C IT +++++
Sbjct: 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 306 QRCCICCEDEKDTAFE-CGHMSCIKCALRMPQ-----CPFCREEI 344
Q C IC E++KD E CGH+ C C + CPFCR EI
Sbjct: 27 QLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 308 CCICCEDEKD-TAFECGHMSCIKCALRM-------PQCPFCREEITTR 347
C IC E K+ + +C H+ C C L++ QCP C+ +IT R
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 304 EAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRV 350
E + C IC + F CGH+ +C +CA + +CP C IT ++++
Sbjct: 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 71
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 302 VAEAQRCCICCEDEKDTAF-ECGHMS-CIKCALRMPQCPFCREEITTRRRVY 351
+ E + C +C + E F CGH+ C +CA + +CP CR I R +
Sbjct: 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 308 CCICCEDEKDTAF--ECGHMSCIKC---ALRM--PQCPFCREEITTRRRVYP 352
C IC + K+T EC H C C ALR +CP CR+++ ++R + P
Sbjct: 37 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP 88
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 301 EVAEAQRCCICCEDEKDTAFECGHMSCIKC----ALRMPQCPFCREEIT 345
++ + + CCIC + D C H C KC + R CP CR ++T
Sbjct: 11 QLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|3LNR|A Chain A, Crystal Structure Of Poly-Hamp Domains From The P.
Aeruginosa Soluble Receptor Aer2
Length = 175
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 207 VGDGPWESIQKFHDKIPALQFD-NFHFVNFTAIMSKTTTTAEKAKDFAAALINASMAADE 265
VG+ P ++ +D + ALQ + S AE ++ A I+ ++ A+
Sbjct: 36 VGEAPAPGYERLYDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAE- 94
Query: 266 LGIMSRMTGRAKKITPKPPPVLSSHCARQMGPVSAEVAEAQ 306
R+ GRA +I ++++H A +M VS A Q
Sbjct: 95 -----RLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQ 130
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 296 GPVSAEVAEAQ--RCCICCEDEKDTAF--ECGHMSCIKCALRMPQCPFCREEITTRRRVY 351
G V A++ Q R C C D + CGH+ C +CA + CP CR + +R R +
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|3H0N|A Chain A, Crystal Structure Of A Duf1470 Family Protein (Jann_2411)
From Jannaschia Sp. Ccs1 At 1.45 A Resolution
Length = 188
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 131 QGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVD-IVEESGGLHHVLVIITSGQVATGSQ 189
+G H C +++ ++ P S A + + V+ VE + LH + +++GQVAT +
Sbjct: 28 RGTPHTGGCVIEDLHDLLKDDPASVAQLGDDHVEGFVELARLLHTAIDALSNGQVATAAT 87
Query: 190 QEQETISSYPLSIVLVGVGDGPWE 213
+ +P + L DG W
Sbjct: 88 ALNHLLRKHPATPELAQDPDGTWR 111
>pdb|4I3M|A Chain A, Aer2 Poly-hamp Domains: L44h Hamp1 Cw-lock Mutant
Length = 175
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 207 VGDGPWESIQKFHDKIPALQFD-NFHFVNFTAIMSKTTTTAEKAKDFAAALINASMAADE 265
VG+ P ++ +D + ALQ + S AE ++ A I+ ++ A+
Sbjct: 36 VGEAPAPGYERHYDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAE- 94
Query: 266 LGIMSRMTGRAKKITPKPPPVLSSHCARQMGPVSAEVAEAQ 306
R+ GRA +I ++++H A +M VS A Q
Sbjct: 95 -----RLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQ 130
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 308 CCICCEDEKDT--AFECGHMSCIKC---ALRM--PQCPFCREEITTRRRVYP 352
C IC + K+T EC H C C ALR +CP CR+++ ++R + P
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP 108
>pdb|4I44|A Chain A, Aer2 Poly-hamp Domains: V33g Hamp1 Inverted Signaling
Mutant
Length = 175
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 208 GDGPWESIQKFHDKIPALQFD-NFHFVNFTAIMSKTTTTAEKAKDFAAALINASMAADEL 266
G+ P ++ +D + ALQ + S AE ++ A I+ ++ A+
Sbjct: 37 GEAPAPGYERLYDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAE-- 94
Query: 267 GIMSRMTGRAKKITPKPPPVLSSHCARQMGPVSAEVAEAQ 306
R+ GRA +I ++++H A +M VS A Q
Sbjct: 95 ----RLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQ 130
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 308 CCICCEDEKDTAF--ECGHMSCIKC---ALRM--PQCPFCREEITTRRRVYP 352
C IC + K+T EC H C C ALR +CP CR+++ ++R + P
Sbjct: 56 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRP 107
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 308 CCICCED-EKDTAFECGHMSCIKCALRMPQ-------CPFCREEI 344
C IC + +K +CGH C+KC ++ + CP C+ +
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 321 ECGHMSCIKC---ALRMPQ-CPFCREEITTRR 348
ECGH+ C +C +L+ CP CR++I +R
Sbjct: 27 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 321 ECGHMSCIKC---ALRMPQ-CPFCREEITTRR 348
ECGH+ C +C +L+ CP CR++I +R
Sbjct: 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 70 ENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129
E +H VDG+ L P + + G E V + C C G F F+ ++SP
Sbjct: 243 EEPRMHCAVDGEWLVPIGQCLCQAGYEKV--EDACQAC---------SPGFFKFEASESP 291
Query: 130 CQGFEHVLECYRKNVPN 146
C LEC +P+
Sbjct: 292 C------LECPEHTLPS 302
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 109 GFGDDTTRD-------EGVFSFQENDSPCQGFEHVLECYR-------KNVPNVQY-FGPT 153
GFGDDTTRD GVF+ D +G ECY+ ++V N +Y P
Sbjct: 455 GFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTRE-QECYQFENIEDFRSVINARYRLVPY 513
Query: 154 SYAPMVEAAVD 164
Y+ ++AA++
Sbjct: 514 LYSEYMKAALN 524
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 70 ENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129
E +H VDG+ L P + + G E V + C C G F F+ ++SP
Sbjct: 215 EEPRMHCAVDGEWLVPIGQCLCQAGYEKV--EDACQAC---------SPGFFKFEASESP 263
Query: 130 CQGFEHVLECYRKNVPN 146
C LEC +P+
Sbjct: 264 C------LECPEHTLPS 274
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 109 GFGDDTTRD-------EGVFSFQENDSPCQGFEHVLECYR-------KNVPNVQY-FGPT 153
GFGDDTTRD GVF+ D +G ECY+ ++V N +Y P
Sbjct: 455 GFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTRE-QECYQFENIEDFRSVINARYRLVPY 513
Query: 154 SYAPMVEAAVD 164
Y+ ++AA++
Sbjct: 514 LYSEYMKAALN 524
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 109 GFGDDTTRD-------EGVFSFQENDSPCQGFEHVLECYR-------KNVPNVQY-FGPT 153
GFGDDTTRD GVF+ D +G ECY+ ++V N +Y P
Sbjct: 455 GFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTRE-QECYQFENIEDFRSVINARYRLVPY 513
Query: 154 SYAPMVEAAVD 164
Y+ ++AA++
Sbjct: 514 LYSEYMKAALN 524
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 302 VAEAQRCCICCEDEKDTAF-ECGHMS-CIKCALRMPQCPFCREEITTRRRVY 351
+ E + C +C + E F CGH+ C CA + +CP CR I R +
Sbjct: 21 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 109 GFGDDTTRD-------EGVFSFQENDSPCQGFEHVLECYR-------KNVPNVQY-FGPT 153
GFGDDTTRD GVF+ D +G ECY+ ++V N +Y P
Sbjct: 455 GFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTRE-QECYQFENIEDFRSVINARYRLVPY 513
Query: 154 SYAPMVEAAVD 164
Y+ ++AA++
Sbjct: 514 LYSEYMKAALN 524
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 109 GFGDDTTRD-------EGVFSFQENDSPCQGFEHVLECYR-------KNVPNVQY-FGPT 153
GFGDDTTRD GVF+ D +G ECY+ ++V N +Y P
Sbjct: 455 GFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTRE-QECYQFENIEDFRSVINARYRLVPY 513
Query: 154 SYAPMVEAAVD 164
Y+ ++AA++
Sbjct: 514 LYSEYMKAALN 524
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 70 ENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129
E +H VDG+ L P + + G E V + C C G F F+ ++SP
Sbjct: 246 EEPRMHCAVDGEWLVPIGQCLCQAGYEKV--EDACQAC---------SPGFFKFEASESP 294
Query: 130 CQGFEHVLECYRKNVPN 146
C LEC +P+
Sbjct: 295 C------LECPEHTLPS 305
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 302 VAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351
+ E + C IC + F CGH+ +C +CA + +CP C IT +++++
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 72
>pdb|3MBW|A Chain A, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 330
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 70 ENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129
E +H VDG+ L P + + G E V + C C G F F+ ++SP
Sbjct: 245 EEPRMHCAVDGEWLVPIGQCLCQAGYEKV--EDACQAC---------SPGFFKFEASESP 293
Query: 130 CQGFEHVLECYRKNVPN 146
C LEC +P+
Sbjct: 294 C------LECPEHTLPS 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,802,055
Number of Sequences: 62578
Number of extensions: 461272
Number of successful extensions: 1065
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1051
Number of HSP's gapped (non-prelim): 61
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)