Query 018644
Match_columns 352
No_of_seqs 300 out of 1469
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 1.5E-73 3.3E-78 574.5 21.1 243 21-269 258-523 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 1E-67 2.2E-72 498.5 19.8 214 30-258 19-249 (254)
3 PF07002 Copine: Copine; Inte 100.0 1.8E-48 4E-53 339.9 13.7 134 73-208 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 99.9 9.7E-24 2.1E-28 192.1 15.9 172 82-269 19-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.7 1.8E-17 4E-22 150.6 13.1 166 50-242 4-188 (199)
6 KOG4172 Predicted E3 ubiquitin 99.0 2.1E-11 4.6E-16 88.2 -2.5 47 306-352 8-61 (62)
7 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.3E-10 2.8E-15 83.4 0.6 43 305-347 2-50 (50)
8 KOG4275 Predicted E3 ubiquitin 98.8 4E-10 8.6E-15 106.9 -2.0 49 304-352 299-349 (350)
9 KOG4265 Predicted E3 ubiquitin 98.7 3.3E-09 7.1E-14 103.5 1.3 49 303-351 288-342 (349)
10 KOG0823 Predicted E3 ubiquitin 98.6 1.8E-08 4E-13 93.2 2.0 49 303-351 45-103 (230)
11 PLN03208 E3 ubiquitin-protein 98.6 3E-08 6.5E-13 90.1 2.6 44 303-346 16-80 (193)
12 KOG0317 Predicted E3 ubiquitin 98.5 2.9E-08 6.3E-13 94.4 1.8 45 303-347 237-286 (293)
13 KOG1571 Predicted E3 ubiquitin 98.5 2.4E-08 5.2E-13 97.6 0.5 49 304-352 304-354 (355)
14 smart00327 VWA von Willebrand 98.5 1.4E-06 3E-11 75.4 10.7 145 49-223 2-159 (177)
15 KOG0320 Predicted E3 ubiquitin 98.4 8.3E-08 1.8E-12 85.6 2.4 48 304-351 130-186 (187)
16 PHA02929 N1R/p28-like protein; 98.4 1.1E-07 2.3E-12 89.6 2.7 47 303-349 172-231 (238)
17 PF13923 zf-C3HC4_2: Zinc fing 98.3 2.2E-07 4.9E-12 63.1 0.6 33 308-340 1-39 (39)
18 PF15227 zf-C3HC4_4: zinc fing 98.3 3E-07 6.5E-12 63.9 1.1 33 308-340 1-42 (42)
19 cd01463 vWA_VGCC_like VWA Volt 98.2 1.1E-05 2.5E-10 72.5 10.9 149 47-220 12-177 (190)
20 KOG2164 Predicted E3 ubiquitin 98.2 5.8E-07 1.3E-11 91.4 1.7 42 305-346 186-237 (513)
21 cd00198 vWFA Von Willebrand fa 98.2 3.9E-05 8.4E-10 64.2 12.5 142 50-220 2-153 (161)
22 PHA02926 zinc finger-like prot 98.2 4.9E-07 1.1E-11 83.5 0.9 45 303-347 168-232 (242)
23 cd01461 vWA_interalpha_trypsin 98.2 2.2E-05 4.7E-10 68.3 11.2 143 49-220 3-150 (171)
24 PF14634 zf-RING_5: zinc-RING 98.2 9.8E-07 2.1E-11 61.7 2.1 36 307-342 1-44 (44)
25 TIGR00599 rad18 DNA repair pro 98.1 8.9E-07 1.9E-11 89.0 2.2 50 297-346 18-72 (397)
26 cd01471 vWA_micronemal_protein 98.1 5.4E-05 1.2E-09 67.6 12.5 148 86-239 19-179 (186)
27 PF13639 zf-RING_2: Ring finge 98.0 9.1E-07 2E-11 61.6 -0.2 35 307-341 2-44 (44)
28 smart00504 Ubox Modified RING 98.0 3.1E-06 6.8E-11 62.7 2.5 41 306-346 2-47 (63)
29 cd01450 vWFA_subfamily_ECM Von 98.0 4.9E-05 1.1E-09 64.8 10.2 140 50-220 2-153 (161)
30 cd00162 RING RING-finger (Real 98.0 2.9E-06 6.2E-11 57.5 1.9 38 307-344 1-45 (45)
31 KOG0287 Postreplication repair 98.0 1.2E-06 2.6E-11 85.0 -0.8 51 296-346 14-69 (442)
32 PF00097 zf-C3HC4: Zinc finger 97.9 2.7E-06 5.8E-11 58.0 0.8 33 308-340 1-41 (41)
33 KOG1785 Tyrosine kinase negati 97.9 2.5E-06 5.5E-11 84.4 0.4 42 306-347 370-418 (563)
34 KOG0978 E3 ubiquitin ligase in 97.9 2.2E-06 4.7E-11 90.8 -0.0 52 300-351 638-697 (698)
35 KOG2177 Predicted E3 ubiquitin 97.9 3.2E-06 6.9E-11 78.3 0.4 44 299-342 7-55 (386)
36 cd01464 vWA_subfamily VWA subf 97.9 7.3E-05 1.6E-09 66.4 8.9 141 48-221 3-160 (176)
37 KOG1100 Predicted E3 ubiquitin 97.8 8.2E-06 1.8E-10 75.5 2.2 46 306-351 159-206 (207)
38 COG5432 RAD18 RING-finger-cont 97.8 5.3E-06 1.1E-10 79.2 0.6 52 295-346 15-71 (391)
39 COG5574 PEX10 RING-finger-cont 97.8 6.6E-06 1.4E-10 77.7 1.2 44 303-346 213-263 (271)
40 cd01466 vWA_C3HC4_type VWA C3H 97.8 0.00019 4.1E-09 62.7 10.3 139 49-220 1-145 (155)
41 cd01456 vWA_ywmD_type VWA ywmD 97.8 0.00022 4.7E-09 65.0 10.6 156 48-219 20-189 (206)
42 smart00184 RING Ring finger. E 97.7 2E-05 4.3E-10 51.4 2.3 33 308-340 1-39 (39)
43 cd01465 vWA_subgroup VWA subgr 97.7 0.00055 1.2E-08 59.5 11.9 140 49-219 1-150 (170)
44 PF13445 zf-RING_UBOX: RING-ty 97.6 1.4E-05 3E-10 55.9 0.4 26 308-334 1-31 (43)
45 cd01482 vWA_collagen_alphaI-XI 97.6 0.00086 1.9E-08 58.8 11.2 125 86-220 21-151 (164)
46 PF14835 zf-RING_6: zf-RING of 97.6 3E-05 6.5E-10 58.5 1.5 44 302-345 4-51 (65)
47 cd01476 VWA_integrin_invertebr 97.6 0.0012 2.7E-08 57.2 11.9 140 49-218 1-153 (163)
48 cd01467 vWA_BatA_type VWA BatA 97.5 0.0016 3.5E-08 57.4 12.2 137 49-209 3-142 (180)
49 PF13519 VWA_2: von Willebrand 97.5 0.00066 1.4E-08 58.2 9.1 146 50-219 1-148 (172)
50 TIGR03788 marine_srt_targ mari 97.4 0.001 2.2E-08 70.5 11.6 126 85-219 288-418 (596)
51 KOG4692 Predicted E3 ubiquitin 97.4 4.9E-05 1.1E-09 74.4 0.7 45 303-347 420-469 (489)
52 cd01454 vWA_norD_type norD typ 97.3 0.0025 5.3E-08 56.4 10.9 119 86-212 22-155 (174)
53 PF13768 VWA_3: von Willebrand 97.3 0.0012 2.7E-08 56.9 8.5 140 50-219 2-146 (155)
54 PF00092 VWA: von Willebrand f 97.3 0.0015 3.2E-08 56.7 8.6 142 50-220 1-154 (178)
55 cd01472 vWA_collagen von Wille 97.2 0.0033 7.3E-08 54.8 10.6 122 88-220 23-151 (164)
56 cd01470 vWA_complement_factors 97.2 0.0027 5.9E-08 57.3 9.8 150 49-220 1-176 (198)
57 PF04564 U-box: U-box domain; 97.1 0.00018 3.9E-09 55.6 1.0 44 304-347 3-52 (73)
58 cd01473 vWA_CTRP CTRP for CS 97.1 0.014 3E-07 53.1 13.2 146 89-239 22-180 (192)
59 KOG0311 Predicted E3 ubiquitin 97.1 3.2E-05 6.9E-10 75.8 -4.3 50 300-349 38-94 (381)
60 cd01474 vWA_ATR ATR (Anthrax T 97.0 0.0049 1.1E-07 55.1 10.0 142 48-220 4-155 (185)
61 cd01480 vWA_collagen_alpha_1-V 97.0 0.0065 1.4E-07 54.5 10.8 107 104-220 48-161 (186)
62 PTZ00441 sporozoite surface pr 97.0 0.0079 1.7E-07 63.2 12.7 138 48-210 42-189 (576)
63 COG5236 Uncharacterized conser 97.0 0.00039 8.5E-09 68.1 2.7 47 301-347 57-110 (493)
64 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00024 5.2E-09 55.0 1.0 36 306-341 20-73 (73)
65 COG5540 RING-finger-containing 97.0 0.00028 6E-09 68.1 1.4 42 304-345 322-372 (374)
66 cd01462 VWA_YIEM_type VWA YIEM 96.9 0.02 4.3E-07 49.2 12.5 129 51-210 3-135 (152)
67 cd01453 vWA_transcription_fact 96.9 0.0087 1.9E-07 54.0 10.3 136 49-210 4-147 (183)
68 COG5243 HRD1 HRD ubiquitin lig 96.8 0.00036 7.8E-09 68.9 0.8 45 301-345 283-345 (491)
69 KOG2879 Predicted E3 ubiquitin 96.8 0.00095 2.1E-08 63.7 3.3 45 301-345 235-287 (298)
70 KOG3002 Zn finger protein [Gen 96.8 0.00059 1.3E-08 66.5 1.9 46 302-347 45-93 (299)
71 cd01475 vWA_Matrilin VWA_Matri 96.7 0.021 4.6E-07 52.8 11.1 141 49-220 3-156 (224)
72 KOG4159 Predicted E3 ubiquitin 96.7 0.00074 1.6E-08 68.2 1.5 45 302-346 81-130 (398)
73 cd01460 vWA_midasin VWA_Midasi 96.6 0.026 5.5E-07 54.4 11.6 136 47-210 59-205 (266)
74 PF14447 Prok-RING_4: Prokaryo 96.6 0.0011 2.3E-08 48.6 1.4 43 304-346 6-51 (55)
75 cd01451 vWA_Magnesium_chelatas 96.5 0.04 8.7E-07 49.0 11.5 123 85-219 18-154 (178)
76 KOG0802 E3 ubiquitin ligase [P 96.4 0.00097 2.1E-08 70.1 0.5 45 301-345 287-341 (543)
77 cd01477 vWA_F09G8-8_type VWA F 96.3 0.052 1.1E-06 49.6 11.4 145 48-219 19-182 (193)
78 cd01481 vWA_collagen_alpha3-VI 96.3 0.056 1.2E-06 47.9 11.3 126 84-220 16-154 (165)
79 cd01469 vWA_integrins_alpha_su 96.3 0.046 1E-06 48.7 10.7 116 84-210 16-143 (177)
80 PRK13685 hypothetical protein; 96.3 0.047 1E-06 53.6 11.6 134 49-210 89-239 (326)
81 PF09967 DUF2201: VWA-like dom 96.0 0.021 4.6E-07 48.6 6.8 121 51-218 1-125 (126)
82 KOG0804 Cytoplasmic Zn-finger 96.0 0.0034 7.4E-08 63.5 2.2 46 300-345 170-222 (493)
83 KOG1039 Predicted E3 ubiquitin 95.9 0.0034 7.3E-08 62.3 1.4 46 303-348 159-224 (344)
84 KOG4628 Predicted E3 ubiquitin 95.8 0.0041 8.8E-08 61.7 1.6 42 306-347 230-280 (348)
85 cd01452 VWA_26S_proteasome_sub 95.8 0.095 2.1E-06 47.9 10.3 157 51-237 6-174 (187)
86 TIGR02031 BchD-ChlD magnesium 95.7 0.11 2.4E-06 55.3 11.9 124 84-219 423-570 (589)
87 PRK13406 bchD magnesium chelat 95.7 0.13 2.7E-06 54.8 12.2 143 46-220 399-558 (584)
88 cd01458 vWA_ku Ku70/Ku80 N-ter 95.6 0.17 3.6E-06 46.6 11.6 149 51-215 4-180 (218)
89 KOG1813 Predicted E3 ubiquitin 95.5 0.0055 1.2E-07 59.1 1.2 43 306-348 242-289 (313)
90 COG5152 Uncharacterized conser 95.3 0.0048 1E-07 56.4 -0.1 43 305-347 196-243 (259)
91 cd01455 vWA_F11C1-5a_type Von 95.2 0.23 5.1E-06 45.5 10.7 152 50-218 2-161 (191)
92 PF12861 zf-Apc11: Anaphase-pr 95.2 0.012 2.5E-07 47.1 1.9 39 307-345 34-82 (85)
93 PF14570 zf-RING_4: RING/Ubox 95.1 0.0081 1.8E-07 43.0 0.7 37 308-344 1-47 (48)
94 TIGR03436 acidobact_VWFA VWFA- 95.0 0.21 4.5E-06 48.0 10.4 133 48-210 53-205 (296)
95 KOG0825 PHD Zn-finger protein 94.9 0.0042 9.1E-08 66.5 -1.6 46 303-348 121-174 (1134)
96 KOG0297 TNF receptor-associate 94.8 0.017 3.7E-07 58.4 2.3 46 302-347 18-69 (391)
97 KOG3039 Uncharacterized conser 94.0 0.031 6.7E-07 52.8 2.0 44 304-347 220-272 (303)
98 KOG1001 Helicase-like transcri 93.8 0.023 4.9E-07 61.3 0.8 40 306-346 455-501 (674)
99 TIGR02442 Cob-chelat-sub cobal 93.8 0.6 1.3E-05 50.2 11.6 132 48-210 465-611 (633)
100 PF04641 Rtf2: Rtf2 RING-finge 93.3 0.054 1.2E-06 51.8 2.5 46 302-347 110-163 (260)
101 PRK10997 yieM hypothetical pro 93.1 1.7 3.7E-05 45.4 13.1 142 47-220 322-469 (487)
102 KOG1002 Nucleotide excision re 92.9 0.027 5.8E-07 58.3 -0.3 46 300-345 531-586 (791)
103 TIGR00868 hCaCC calcium-activa 92.6 1.2 2.6E-05 49.5 11.8 141 50-219 306-450 (863)
104 KOG2660 Locus-specific chromos 92.4 0.027 5.8E-07 55.2 -1.0 49 300-348 10-64 (331)
105 COG5175 MOT2 Transcriptional r 92.2 0.051 1.1E-06 53.5 0.7 43 304-346 13-65 (480)
106 PF11789 zf-Nse: Zinc-finger o 91.4 0.073 1.6E-06 39.4 0.5 37 303-339 9-53 (57)
107 KOG0828 Predicted E3 ubiquitin 91.3 0.065 1.4E-06 55.1 0.3 45 302-346 568-635 (636)
108 KOG1814 Predicted E3 ubiquitin 90.8 0.074 1.6E-06 53.6 0.1 31 304-334 183-217 (445)
109 PF05762 VWA_CoxE: VWA domain 90.6 1.8 3.9E-05 40.2 9.3 82 104-195 90-172 (222)
110 COG5222 Uncharacterized conser 90.4 0.11 2.3E-06 50.5 0.8 37 306-342 275-318 (427)
111 KOG0826 Predicted E3 ubiquitin 90.3 0.19 4.1E-06 49.4 2.4 43 302-344 297-345 (357)
112 KOG1734 Predicted RING-contain 88.3 0.21 4.5E-06 48.0 1.1 44 303-346 222-282 (328)
113 KOG2113 Predicted RNA binding 88.0 0.37 8.1E-06 47.2 2.6 49 302-350 340-392 (394)
114 COG5219 Uncharacterized conser 86.7 0.24 5.2E-06 54.7 0.6 45 302-346 1466-1524(1525)
115 PF05290 Baculo_IE-1: Baculovi 86.2 0.27 5.9E-06 42.5 0.5 43 305-347 80-134 (140)
116 PF03854 zf-P11: P-11 zinc fin 85.4 0.38 8.2E-06 34.4 0.8 43 306-349 3-50 (50)
117 KOG2932 E3 ubiquitin ligase in 84.6 0.4 8.7E-06 46.9 0.9 40 307-346 91-135 (389)
118 PF10367 Vps39_2: Vacuolar sor 84.4 0.52 1.1E-05 38.0 1.4 33 301-333 74-109 (109)
119 PF02891 zf-MIZ: MIZ/SP-RING z 81.9 0.64 1.4E-05 33.4 0.9 38 306-343 3-50 (50)
120 KOG1493 Anaphase-promoting com 81.9 0.35 7.5E-06 38.0 -0.5 41 305-345 31-81 (84)
121 PF11793 FANCL_C: FANCL C-term 78.7 0.59 1.3E-05 35.8 -0.2 42 305-346 2-67 (70)
122 KOG2068 MOT2 transcription fac 77.8 4.3 9.4E-05 40.1 5.4 45 304-348 248-301 (327)
123 PF04710 Pellino: Pellino; In 76.2 0.84 1.8E-05 46.1 0.0 42 305-346 328-402 (416)
124 KOG4362 Transcriptional regula 73.9 0.84 1.8E-05 49.2 -0.7 44 303-346 19-70 (684)
125 PF10272 Tmpp129: Putative tra 73.6 2.8 6E-05 42.2 2.9 10 336-345 342-351 (358)
126 PF11775 CobT_C: Cobalamin bio 72.2 12 0.00026 35.1 6.6 39 171-209 134-187 (219)
127 KOG3842 Adaptor protein Pellin 71.7 2.3 4.9E-05 41.9 1.7 44 303-346 339-415 (429)
128 smart00744 RINGv The RING-vari 71.1 2.4 5.3E-05 30.2 1.4 35 307-341 1-49 (49)
129 KOG3579 Predicted E3 ubiquitin 70.8 3 6.6E-05 40.5 2.3 30 304-333 267-301 (352)
130 COG4245 TerY Uncharacterized p 70.2 13 0.00029 34.2 6.2 73 147-220 73-160 (207)
131 PF05883 Baculo_RING: Baculovi 69.8 1 2.2E-05 39.0 -1.0 31 304-334 25-65 (134)
132 KOG1428 Inhibitor of type V ad 69.0 1.7 3.7E-05 50.4 0.2 45 303-347 3484-3546(3738)
133 PHA03096 p28-like protein; Pro 68.4 2 4.4E-05 41.8 0.6 29 306-334 179-216 (284)
134 KOG4445 Uncharacterized conser 67.4 0.89 1.9E-05 44.4 -2.0 42 305-346 115-187 (368)
135 PF04216 FdhE: Protein involve 66.3 2.1 4.6E-05 41.4 0.3 48 304-351 171-228 (290)
136 KOG3799 Rab3 effector RIM1 and 66.1 2.2 4.8E-05 37.1 0.3 39 303-344 63-117 (169)
137 COG1240 ChlD Mg-chelatase subu 64.5 21 0.00046 34.3 6.6 101 99-211 111-224 (261)
138 COG5194 APC11 Component of SCF 63.8 4.1 8.9E-05 32.3 1.4 40 306-345 32-81 (88)
139 PRK03564 formate dehydrogenase 59.7 6.4 0.00014 38.8 2.3 40 304-343 186-235 (309)
140 KOG2113 Predicted RNA binding 57.7 4 8.8E-05 40.2 0.5 47 303-349 134-187 (394)
141 KOG3899 Uncharacterized conser 57.5 3.6 7.9E-05 40.1 0.2 11 335-345 355-365 (381)
142 KOG2817 Predicted E3 ubiquitin 56.0 5 0.00011 40.6 0.9 43 302-344 331-384 (394)
143 KOG1812 Predicted E3 ubiquitin 55.6 4.7 0.0001 40.9 0.6 31 304-334 145-180 (384)
144 COG2425 Uncharacterized protei 53.7 28 0.00061 36.0 5.8 51 127-183 326-377 (437)
145 PF10571 UPF0547: Uncharacteri 53.2 8.5 0.00018 23.9 1.3 20 307-326 2-24 (26)
146 PF07191 zinc-ribbons_6: zinc- 52.3 2.2 4.7E-05 33.0 -1.8 38 306-346 2-42 (70)
147 KOG0825 PHD Zn-finger protein 49.2 7.3 0.00016 42.7 0.8 41 306-346 100-155 (1134)
148 TIGR01562 FdhE formate dehydro 48.7 9 0.00019 37.7 1.3 41 303-343 182-233 (305)
149 PF02601 Exonuc_VII_L: Exonucl 46.9 68 0.0015 31.2 7.2 85 128-216 23-124 (319)
150 KOG3161 Predicted E3 ubiquitin 45.8 8.6 0.00019 41.3 0.7 27 316-343 26-55 (861)
151 PF10083 DUF2321: Uncharacteri 43.3 8.4 0.00018 34.3 0.2 26 324-349 28-54 (158)
152 TIGR01651 CobT cobaltochelatas 41.8 55 0.0012 35.2 5.9 40 170-210 513-568 (600)
153 KOG3842 Adaptor protein Pellin 41.7 14 0.0003 36.6 1.4 20 95-114 97-117 (429)
154 KOG2169 Zn-finger transcriptio 41.6 12 0.00026 40.4 1.1 44 300-346 301-357 (636)
155 KOG1815 Predicted E3 ubiquitin 41.2 12 0.00026 38.5 1.0 31 303-333 68-100 (444)
156 KOG3039 Uncharacterized conser 41.1 14 0.0003 35.4 1.2 34 300-333 38-72 (303)
157 PF09297 zf-NADH-PPase: NADH p 40.4 7.3 0.00016 25.0 -0.5 19 324-342 3-29 (32)
158 PF01363 FYVE: FYVE zinc finge 40.2 9.2 0.0002 28.5 -0.0 32 303-334 7-43 (69)
159 COG4306 Uncharacterized protei 38.4 11 0.00024 32.4 0.2 23 326-348 30-53 (160)
160 KOG0298 DEAD box-containing he 37.2 5.8 0.00013 45.6 -2.2 45 302-346 1150-1200(1394)
161 PLN02189 cellulose synthase 36.1 25 0.00055 40.0 2.5 42 304-345 33-87 (1040)
162 COG2816 NPY1 NTP pyrophosphohy 35.7 16 0.00036 35.4 0.9 24 323-346 110-141 (279)
163 KOG2353 L-type voltage-depende 35.4 1.8E+02 0.004 33.7 9.1 121 91-216 248-382 (1104)
164 PRK13886 conjugal transfer pro 35.4 2E+02 0.0044 27.3 8.2 91 130-220 67-174 (241)
165 PHA02825 LAP/PHD finger-like p 34.8 22 0.00047 31.9 1.4 44 303-346 6-60 (162)
166 PF06906 DUF1272: Protein of u 34.3 18 0.00038 26.8 0.7 29 319-347 22-54 (57)
167 COG4548 NorD Nitric oxide redu 34.3 1.2E+02 0.0026 32.5 6.8 157 49-234 447-619 (637)
168 PF10235 Cript: Microtubule-as 33.9 22 0.00048 28.8 1.2 38 305-346 44-81 (90)
169 PF07975 C1_4: TFIIH C1-like d 32.5 38 0.00082 24.6 2.1 21 321-341 26-50 (51)
170 PRK14714 DNA polymerase II lar 32.1 44 0.00095 38.9 3.5 42 305-347 667-722 (1337)
171 PF06415 iPGM_N: BPG-independe 31.3 1E+02 0.0022 29.0 5.4 39 157-195 14-52 (223)
172 PF02318 FYVE_2: FYVE-type zin 31.0 6.1 0.00013 33.1 -2.6 40 304-343 53-103 (118)
173 PF03731 Ku_N: Ku70/Ku80 N-ter 30.7 3.5E+02 0.0075 24.4 8.8 140 51-207 2-172 (224)
174 PF14569 zf-UDP: Zinc-binding 30.5 34 0.00074 27.0 1.7 43 304-346 8-63 (80)
175 KOG0781 Signal recognition par 28.9 93 0.002 32.9 5.0 63 155-220 451-521 (587)
176 PLN02436 cellulose synthase A 28.4 36 0.00079 38.9 2.1 42 304-345 35-89 (1094)
177 KOG1202 Animal-type fatty acid 27.9 43 0.00093 39.1 2.5 79 95-186 2137-2221(2376)
178 KOG1941 Acetylcholine receptor 27.8 14 0.0003 37.6 -1.1 42 304-345 364-416 (518)
179 cd00065 FYVE FYVE domain; Zinc 27.4 40 0.00088 23.8 1.6 29 306-334 3-36 (57)
180 KOG4218 Nuclear hormone recept 26.7 29 0.00062 34.9 0.9 15 303-317 13-27 (475)
181 KOG3053 Uncharacterized conser 26.5 26 0.00057 33.7 0.6 46 300-345 15-82 (293)
182 TIGR02493 PFLA pyruvate format 25.9 4.1E+02 0.0088 24.1 8.4 70 145-219 67-138 (235)
183 KOG2114 Vacuolar assembly/sort 25.8 20 0.00044 39.7 -0.4 43 306-348 841-886 (933)
184 PF13240 zinc_ribbon_2: zinc-r 25.5 28 0.0006 20.9 0.3 6 337-342 16-21 (23)
185 COG1212 KdsB CMP-2-keto-3-deox 25.3 1.8E+02 0.0039 27.8 5.8 44 173-216 62-108 (247)
186 smart00064 FYVE Protein presen 25.2 48 0.001 24.4 1.7 30 305-334 10-44 (68)
187 KOG1729 FYVE finger containing 24.8 16 0.00036 35.6 -1.2 41 304-344 167-224 (288)
188 KOG1940 Zn-finger protein [Gen 24.7 20 0.00044 34.8 -0.5 39 308-347 161-208 (276)
189 PF10497 zf-4CXXC_R1: Zinc-fin 24.4 49 0.0011 27.4 1.7 17 326-342 40-69 (105)
190 COG2956 Predicted N-acetylgluc 24.3 29 0.00064 34.8 0.5 19 324-342 354-376 (389)
191 PF10764 Gin: Inhibitor of sig 24.3 35 0.00077 24.1 0.7 28 307-334 1-28 (46)
192 COG3360 Uncharacterized conser 24.3 1.4E+02 0.0031 23.0 4.0 42 144-186 6-51 (71)
193 PF10217 DUF2039: Uncharacteri 23.6 24 0.00052 28.7 -0.2 36 305-343 55-90 (92)
194 COG3813 Uncharacterized protei 23.1 39 0.00084 26.4 0.8 24 323-346 28-53 (84)
195 PF00532 Peripla_BP_1: Peripla 23.1 1.7E+02 0.0038 27.6 5.5 79 155-238 16-103 (279)
196 COG5109 Uncharacterized conser 22.3 38 0.00083 33.6 0.8 42 302-343 333-385 (396)
197 PF13353 Fer4_12: 4Fe-4S singl 22.2 1.5E+02 0.0032 24.4 4.3 51 134-186 42-97 (139)
198 KOG3113 Uncharacterized conser 22.0 52 0.0011 31.7 1.6 44 304-347 110-160 (293)
199 cd00350 rubredoxin_like Rubred 22.0 28 0.00061 22.5 -0.1 16 333-348 16-31 (33)
200 PLN02638 cellulose synthase A 21.8 72 0.0016 36.6 2.9 42 304-345 16-70 (1079)
201 COG4647 AcxC Acetone carboxyla 21.6 46 0.001 28.9 1.1 22 308-329 60-82 (165)
202 KOG2789 Putative Zn-finger pro 21.6 55 0.0012 33.5 1.7 31 304-334 73-106 (482)
203 KOG4146 Ubiquitin-like protein 21.5 3.8E+02 0.0082 22.0 6.2 62 151-234 34-96 (101)
204 KOG1952 Transcription factor N 21.2 37 0.0008 37.8 0.5 42 303-344 189-246 (950)
205 smart00834 CxxC_CXXC_SSSS Puta 20.2 40 0.00088 22.2 0.4 14 333-346 25-38 (41)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-73 Score=574.52 Aligned_cols=243 Identities=33% Similarity=0.514 Sum_probs=223.1
Q ss_pred CCCCCCCCCCCCCcchhhhhhccCCCceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc
Q 018644 21 SVDFAEPPRFDDELPEAPAGVRDPSKVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF 100 (352)
Q Consensus 21 ~~~~~~~~~~~~~l~~~~~~L~~~gl~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y 100 (352)
..+...+.++|+++++++-.+..+|++++||+||||||+||+|+|.+ .||||+ ++...|+||+||++||++|++|
T Consensus 258 k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi-~p~~~N~Y~~Ai~~vG~~lq~y 332 (529)
T KOG1327|consen 258 KNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYI-DPHQPNPYEQAIRSVGETLQDY 332 (529)
T ss_pred cccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----Ccceec-CCCCCCHHHHHHHHHhhhhccc
Confidence 34678899999999999999999999999999999999999998764 499999 5788999999999999999999
Q ss_pred CCC-ccceeeecCCCCCC---CCc--ccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC---C
Q 018644 101 DGD-CIRCYGFGDDTTRD---EGV--FSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---G 171 (352)
Q Consensus 101 d~d-~ip~~GFGa~~~~~---~~~--f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~---~ 171 (352)
|+| +||+|||||++|++ +|+ |||+|.||+|.|++||++||++++|+|+|+|||+|||||++|+++|+++. .
T Consensus 333 dsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~ 412 (529)
T KOG1327|consen 333 DSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAG 412 (529)
T ss_pred CCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCc
Confidence 999 99999999998874 554 55667899999999999999999999999999999999999999999885 7
Q ss_pred ceEEEEEEeCCccCCccHHHHHHH---hcCCcEEEEEeecCCCcchhccccCCCCC-------cceeeEeeecchhhhcc
Q 018644 172 LHHVLVIITSGQVATGSQQEQETI---SSYPLSIVLVGVGDGPWESIQKFHDKIPA-------LQFDNFHFVNFTAIMSK 241 (352)
Q Consensus 172 ~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlSIiiVGVG~~~f~~m~~LD~~~~~-------r~rDnvqFV~f~~~~~~ 241 (352)
+||||||||||+|+| |++|+++| |+||||||||||||+||+.|++||++.+. +.|||||||+|++++++
T Consensus 413 qY~VLlIitDG~vTd-m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD~vQFV~f~~~~~~ 491 (529)
T KOG1327|consen 413 QYHVLLIITDGVVTD-MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERDNVQFVPFRDIMNG 491 (529)
T ss_pred ceEEEEEEeCCcccc-HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCcccccccccccccceEeecHHHHhhc
Confidence 999999999999999 69999999 99999999999999999999999988765 78999999999999988
Q ss_pred ccccchHHHHHHHH-HHH---HHHHhhhhccc
Q 018644 242 TTTTAEKAKDFAAA-LIN---ASMAADELGIM 269 (352)
Q Consensus 242 ~~~~~~~~~~la~~-L~E---qy~~~~~l~ll 269 (352)
+.+...++++||+. ||| ||..+++++-+
T Consensus 492 ~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~ 523 (529)
T KOG1327|consen 492 AENPSDKEAALALAVLAEIPQQYVQYMRLRGI 523 (529)
T ss_pred CCcccchhHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 65555567999999 999 99999998544
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=1e-67 Score=498.49 Aligned_cols=214 Identities=40% Similarity=0.678 Sum_probs=190.8
Q ss_pred CCCCcchhhhhhccCCCceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-cccee
Q 018644 30 FDDELPEAPAGVRDPSKVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCY 108 (352)
Q Consensus 30 ~~~~l~~~~~~L~~~gl~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~ 108 (352)
+|+|||++. |++++||+||||||+||||+++ ++||||+ ++...|+||+||++||+||+.||+| +||+|
T Consensus 19 ~~tFldy~~------~G~~~nl~vaIDfT~SNg~p~~----~~SLHy~-~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~ 87 (254)
T cd01459 19 QPTFLDYRS------AGLESNLIVAIDFTKSNGWPGE----KRSLHYI-SPGRLNPYQKAIRIVGEVLQPYDSDKLIPAF 87 (254)
T ss_pred CCCHHHHHh------CCCeeeEEEEEEeCCCCCCCCC----CCCcccC-CCCCccHHHHHHHHHHHHHHhcCCCCceeeE
Confidence 677777764 5567899999999999999765 6899999 5778999999999999999999999 99999
Q ss_pred eecCCCCCCC---CcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCC--ceEEEEEEeCCc
Q 018644 109 GFGDDTTRDE---GVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQ 183 (352)
Q Consensus 109 GFGa~~~~~~---~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~--~Y~VLlIitDG~ 183 (352)
||||+.++.. ++|++|+++|+|.|++||+++|++++++|+|+|||+|+|||++|+++|+++.. +|+||||||||+
T Consensus 88 GFGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~ 167 (254)
T cd01459 88 GFGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGE 167 (254)
T ss_pred eecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCC
Confidence 9999977653 45666788999999999999999999999999999999999999999987643 499999999999
Q ss_pred cCCccHHHHHHH---hcCCcEEEEEeecCCCcchhccccC-------CCCCcceeeEeeecchhhhccccccchHHHHHH
Q 018644 184 VATGSQQEQETI---SSYPLSIVLVGVGDGPWESIQKFHD-------KIPALQFDNFHFVNFTAIMSKTTTTAEKAKDFA 253 (352)
Q Consensus 184 i~d~~~~~~~~i---S~~PlSIiiVGVG~~~f~~m~~LD~-------~~~~r~rDnvqFV~f~~~~~~~~~~~~~~~~la 253 (352)
|+| +++|+++| |++||||||||||+++|+.|++||+ .++.|.|||||||+|+++.... ++++++||
T Consensus 168 i~D-~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~---~~~~~~La 243 (254)
T cd01459 168 ITD-MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA---GNPEAALA 243 (254)
T ss_pred ccc-HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc---cccHHHHH
Confidence 999 69999998 9999999999999999999999997 3566789999999999997542 12468999
Q ss_pred HH-HHH
Q 018644 254 AA-LIN 258 (352)
Q Consensus 254 ~~-L~E 258 (352)
++ |+|
T Consensus 244 ~~~L~E 249 (254)
T cd01459 244 TAALAE 249 (254)
T ss_pred HHHHHh
Confidence 99 999
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1.8e-48 Score=339.94 Aligned_cols=134 Identities=41% Similarity=0.750 Sum_probs=125.3
Q ss_pred CcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCC---CCcccCC--CCCCCCCCHHHHHHHHHhhCCc
Q 018644 73 SLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRD---EGVFSFQ--ENDSPCQGFEHVLECYRKNVPN 146 (352)
Q Consensus 73 SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~---~~~f~~~--~~~p~~~G~~gvl~~Y~~~l~~ 146 (352)
||||+ ++..+|+||+||++||++|++||+| +||+|||||+.+++ ++||+|| ++||+|.|++||+++|++++++
T Consensus 1 SLH~~-~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~ 79 (146)
T PF07002_consen 1 SLHYI-SPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPK 79 (146)
T ss_pred CcccC-CCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhh
Confidence 89999 5667999999999999999999999 99999999998866 5678887 5789999999999999999999
Q ss_pred eeeecCCCcHHHHHHHHHHHHH---cCCceEEEEEEeCCccCCccHHHHHHH---hcCCcEEEEEeec
Q 018644 147 VQYFGPTSYAPMVEAAVDIVEE---SGGLHHVLVIITSGQVATGSQQEQETI---SSYPLSIVLVGVG 208 (352)
Q Consensus 147 v~l~gPt~fapiI~~a~~~a~~---~~~~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlSIiiVGVG 208 (352)
|+|+|||+|+|||++|+++|++ .+++|+||||||||+|+| +++|+++| |++||||||||||
T Consensus 80 v~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D-~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 80 VQLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD-MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred eEECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc-HHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999999999999999994 567999999999999999 69999998 9999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.91 E-value=9.7e-24 Score=192.05 Aligned_cols=172 Identities=23% Similarity=0.303 Sum_probs=142.7
Q ss_pred CCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHH
Q 018644 82 TLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVE 160 (352)
Q Consensus 82 ~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~ 160 (352)
+.+..|.+..++..+..+||+| .+++|.||.+..+...+ ....+++.++.....++.+...|-|+++|||+
T Consensus 19 k~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~ 90 (200)
T PF10138_consen 19 KDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------TLDNYEGYVDELHAGLPDWGRMGGTNYAPVME 90 (200)
T ss_pred hCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------CHHHHHHHHHHHhccccccCCCCCcchHHHHH
Confidence 4678999999999999999999 99999999976554433 23457777766666556667667799999999
Q ss_pred HHHHHHHHc-CCceEEE-EEEeCCccCCccHHHHHHH---hcCCcEEEEEeecCCCcchhccccCCCCCcceeeEeeecc
Q 018644 161 AAVDIVEES-GGLHHVL-VIITSGQVATGSQQEQETI---SSYPLSIVLVGVGDGPWESIQKFHDKIPALQFDNFHFVNF 235 (352)
Q Consensus 161 ~a~~~a~~~-~~~Y~VL-lIitDG~i~d~~~~~~~~i---S~~PlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV~f 235 (352)
.+++...++ ......| |++|||.++| .++++++| |++||+|.|||||+.+|+.+++||+ +.+|..||+.|+..
T Consensus 91 ~v~~~y~~~~~~~~P~~VlFiTDG~~~~-~~~~~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~ 168 (200)
T PF10138_consen 91 DVLDHYFKREPSDAPALVLFITDGGPDD-RRAIEKLIREASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAI 168 (200)
T ss_pred HHHHHHhhcCCCCCCeEEEEEecCCccc-hHHHHHHHHhccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEec
Confidence 999998743 2233333 5599999999 68888888 9999999999999999999999999 89999999999999
Q ss_pred hhhhccccccchHHHHHHHH-HHH--HH-HHhhhhccc
Q 018644 236 TAIMSKTTTTAEKAKDFAAA-LIN--AS-MAADELGIM 269 (352)
Q Consensus 236 ~~~~~~~~~~~~~~~~la~~-L~E--qy-~~~~~l~ll 269 (352)
.++...+ +++|+.. |.| +| ++++.+|+|
T Consensus 169 ~d~~~ls------D~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 169 DDIDELS------DEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred CCcccCC------HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9986443 6899999 988 55 999999886
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.74 E-value=1.8e-17 Score=150.64 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=121.4
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p 128 (352)
.+++.||.|+|+++. ..+.++|. .+.+++++.+++.++..||.| ...++.||.... .++.
T Consensus 4 dvv~~ID~SgSM~~~----~~~~~~~k------~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~----- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEA----DEAKERSR------WEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV----- 64 (199)
T ss_pred CEEEEEECCCcCCCC----CCCCCchH------HHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-----
Confidence 578999999999753 11234443 499999999999999999999 666666655311 1221
Q ss_pred CCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHH-HHHc-----CCceEEEEEEeCCccCCccHHHHHHH---hc--
Q 018644 129 PCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDI-VEES-----GGLHHVLVIITSGQVATGSQQEQETI---SS-- 197 (352)
Q Consensus 129 ~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~-a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~i---S~-- 197 (352)
..+++.++|.+ +...|+|++.+.|+.+++. .+.. ...+.+++|||||..+| .+.+.++| ++
T Consensus 65 ---~~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d-~~~~~~~i~~a~~~l 136 (199)
T cd01457 65 ---NSSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD-KDAVERVIIKASDEL 136 (199)
T ss_pred ---CHHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc-HHHHHHHHHHHHHhh
Confidence 16677777754 4456999999999999753 3321 12388889999999999 57767666 32
Q ss_pred ---CCcEEEEEeecCC--CcchhccccCCC--CCcceeeEeeecchhhhccc
Q 018644 198 ---YPLSIVLVGVGDG--PWESIQKFHDKI--PALQFDNFHFVNFTAIMSKT 242 (352)
Q Consensus 198 ---~PlSIiiVGVG~~--~f~~m~~LD~~~--~~r~rDnvqFV~f~~~~~~~ 242 (352)
.+|.|.+||||++ .|..|++||+.+ ..+.||||+||+|+++...+
T Consensus 137 ~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~~ 188 (199)
T cd01457 137 DADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERLT 188 (199)
T ss_pred ccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcCC
Confidence 3788888888875 899999999753 34679999999999986544
No 6
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.1e-11 Score=88.21 Aligned_cols=47 Identities=40% Similarity=0.994 Sum_probs=43.3
Q ss_pred CcccCcccCCCCeee-cCCCC-CchhhhhcCC-----CCCCCccccCCeeecCC
Q 018644 306 QRCCICCEDEKDTAF-ECGHM-SCIKCALRMP-----QCPFCREEITTRRRVYP 352 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~-----~CP~CR~~i~~~i~if~ 352 (352)
.+|.||+|++.|.++ -|||+ +|.+|+.+++ .||+||.+|..+++.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 689999999999998 99999 9999999873 59999999999999875
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.96 E-value=1.3e-10 Score=83.38 Aligned_cols=43 Identities=40% Similarity=1.035 Sum_probs=37.4
Q ss_pred CCcccCcccCCCCeee-cCCCC-CchhhhhcC----CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDTAF-ECGHM-SCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
+..|.||++...++++ ||||. +|..|+.++ ..||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 5689999999999988 99999 999999988 7899999999753
No 8
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4e-10 Score=106.90 Aligned_cols=49 Identities=43% Similarity=1.057 Sum_probs=46.5
Q ss_pred cCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018644 304 EAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 352 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if~ 352 (352)
...+|.||++.++|.+| +|||+ .|.+|..+|..||+||+.|.+++|||+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 37899999999999998 99999 899999999999999999999999985
No 9
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.3e-09 Score=103.50 Aligned_cols=49 Identities=33% Similarity=0.877 Sum_probs=43.7
Q ss_pred ccCCcccCcccCCCCeee-cCCCC-CchhhhhcC----CCCCCCccccCCeeecC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM----PQCPFCREEITTRRRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~----~~CP~CR~~i~~~i~if 351 (352)
.+..+|+||++..+|+++ ||+|+ +|..|+..+ ..||+||++|...+.|+
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 456899999999999887 99999 899999977 46999999999987775
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-08 Score=93.21 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=42.6
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC--eeecC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT--RRRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-------~~CP~CR~~i~~--~i~if 351 (352)
.....|-||+|..+++++ .|||+||..|+-++ ..||+|+..|+. ++.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456899999999999999 99999999999988 469999999876 45555
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.56 E-value=3e-08 Score=90.09 Aligned_cols=44 Identities=30% Similarity=0.912 Sum_probs=38.6
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC--------------------CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM--------------------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~--------------------~~CP~CR~~i~~ 346 (352)
.+..+|+||++..+++++ +|||.||..|+.++ ..||+||.++..
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 456899999999999988 99999999999743 369999999976
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.9e-08 Score=94.41 Aligned_cols=45 Identities=31% Similarity=0.953 Sum_probs=40.1
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.....|.+|+++..++.- ||||.||..|+..+ ..||+||+++...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 456899999999999877 99999999999987 5799999998764
No 13
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-08 Score=97.60 Aligned_cols=49 Identities=37% Similarity=1.021 Sum_probs=45.2
Q ss_pred cCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018644 304 EAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 352 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if~ 352 (352)
....|.||.+.+.+++| ||||+ +|..|...+++||+||+.|...+++|.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 45689999999999998 99999 889999999999999999999998874
No 14
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.47 E-value=1.4e-06 Score=75.36 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=99.2
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~~ 124 (352)
+++.+.||-|.|.. ......+...+..++..+. .+ .+-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~ 58 (177)
T smart00327 2 LDVVFLLDGSGSMG--------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN 58 (177)
T ss_pred ccEEEEEeCCCccc--------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc
Confidence 46788999988863 1233444444444444444 47 9999999985321 22221
Q ss_pred CCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc---C--CceEEEEEEeCCccCCccHHHHHHH---h
Q 018644 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES---G--GLHHVLVIITSGQVATGSQQEQETI---S 196 (352)
Q Consensus 125 ~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~---~--~~Y~VLlIitDG~i~d~~~~~~~~i---S 196 (352)
...+.+.+.+..+...+. ..|.|++...|+++.+...+. . +...+++|+|||...+ .+...+.+ .
T Consensus 59 ----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~-~~~~~~~~~~~~ 131 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESND-GGDLLKAAKELK 131 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCC-CccHHHHHHHHH
Confidence 245777777766654443 578899999999999887521 1 1257889999999887 23445554 6
Q ss_pred cCCcEEEEEeecCC-CcchhccccCCCC
Q 018644 197 SYPLSIVLVGVGDG-PWESIQKFHDKIP 223 (352)
Q Consensus 197 ~~PlSIiiVGVG~~-~f~~m~~LD~~~~ 223 (352)
...+.|++||+|+. +...|+.|.....
T Consensus 132 ~~~i~i~~i~~~~~~~~~~l~~~~~~~~ 159 (177)
T smart00327 132 RSGVKVFVVGVGNDVDEEELKKLASAPG 159 (177)
T ss_pred HCCCEEEEEEccCccCHHHHHHHhCCCc
Confidence 66799999999998 9999999987443
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.3e-08 Score=85.63 Aligned_cols=48 Identities=33% Similarity=0.914 Sum_probs=38.6
Q ss_pred cCCcccCcccCCCCee-e--cCCCCCchhhhhcC----CCCCCCccccCCe--eecC
Q 018644 304 EAQRCCICCEDEKDTA-F--ECGHMSCIKCALRM----PQCPFCREEITTR--RRVY 351 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-~--pCGH~~C~~C~~~~----~~CP~CR~~i~~~--i~if 351 (352)
....|+|||+....-+ + .|||.||..|+... ..||+||+.|+.. .+||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3488999999766644 3 99999999999976 6799999888763 5555
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.43 E-value=1.1e-07 Score=89.58 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=38.0
Q ss_pred ccCCcccCcccCCCC--------eee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018644 303 AEAQRCCICCEDEKD--------TAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 349 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~--------~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~ 349 (352)
....+|+||++...+ +++ +|||.||..|+.++ ..||+||.++...++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 346799999997443 245 89999999999876 579999999988654
No 17
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.26 E-value=2.2e-07 Score=63.15 Aligned_cols=33 Identities=39% Similarity=1.139 Sum_probs=27.6
Q ss_pred ccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCC
Q 018644 308 CCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFC 340 (352)
Q Consensus 308 C~IC~~~~~~~-~~-pCGH~~C~~C~~~~----~~CP~C 340 (352)
|+||++...++ ++ +|||.||.+|+.++ .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999998 45 99999999999876 679987
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.26 E-value=3e-07 Score=63.88 Aligned_cols=33 Identities=42% Similarity=0.900 Sum_probs=26.9
Q ss_pred ccCcccCCCCeee-cCCCCCchhhhhcC--------CCCCCC
Q 018644 308 CCICCEDEKDTAF-ECGHMSCIKCALRM--------PQCPFC 340 (352)
Q Consensus 308 C~IC~~~~~~~~~-pCGH~~C~~C~~~~--------~~CP~C 340 (352)
|+||++..++++. +|||.||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999887 99999999999976 258887
No 19
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.22 E-value=1.1e-05 Score=72.52 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=95.7
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
...++.+.||-|.|=. | +..+.|-.++..++..+..+ .+-++.|+........++....
T Consensus 12 ~p~~vv~llD~SgSM~--~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~ 71 (190)
T cd01463 12 SPKDIVILLDVSGSMT--G------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTL 71 (190)
T ss_pred CCceEEEEEECCCCCC--c------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccce
Confidence 4688899999988742 1 23455555555667777777 9999999987542221111100
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHH---c------CCceEEEEEEeCCccCCccHHHHHHH-
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE---S------GGLHHVLVIITSGQVATGSQQEQETI- 195 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~---~------~~~Y~VLlIitDG~i~d~~~~~~~~i- 195 (352)
........+.+ .+.+..++..|.|++...|+.+.+..++ . ...-.++++||||..++ ..+..+.+
T Consensus 72 ~~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~ 146 (190)
T cd01463 72 VQATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN-YKEIFDKYN 146 (190)
T ss_pred EecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-HhHHHHHhc
Confidence 00001123333 4456677889999999999999887654 1 11235789999999887 34444444
Q ss_pred ----hcCCcEEEEEeecCC--CcchhccccC
Q 018644 196 ----SSYPLSIVLVGVGDG--PWESIQKFHD 220 (352)
Q Consensus 196 ----S~~PlSIiiVGVG~~--~f~~m~~LD~ 220 (352)
.+.|+.|..||||.. +...|+.|=.
T Consensus 147 ~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~ 177 (190)
T cd01463 147 WDKNSEIPVRVFTYLIGREVTDRREIQWMAC 177 (190)
T ss_pred ccccCCCcEEEEEEecCCccccchHHHHHHh
Confidence 224799999999974 6888877743
No 20
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5.8e-07 Score=91.41 Aligned_cols=42 Identities=38% Similarity=0.833 Sum_probs=38.4
Q ss_pred CCcccCcccCCCCeee-cCCCCCchhhhhcC---------CCCCCCccccCC
Q 018644 305 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM---------PQCPFCREEITT 346 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~---------~~CP~CR~~i~~ 346 (352)
...||||++.+..++. .|||.||..|+.+. .+||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999888 99999999999865 579999999987
No 21
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.17 E-value=3.9e-05 Score=64.18 Aligned_cols=142 Identities=13% Similarity=0.270 Sum_probs=93.0
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCC---C-ccceeeecCCCCCCCCcccCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~---d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
++++.||.|.|-. ...++.+...+..++..+.. . .+-+++|+.... ..++++.
T Consensus 2 ~v~~viD~S~Sm~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~ 58 (161)
T cd00198 2 DIVFLLDVSGSMG--------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTT 58 (161)
T ss_pred cEEEEEeCCCCcC--------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeecccc
Confidence 5788999987731 13445555555555555554 6 999999997421 1233321
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc--CCceEEEEEEeCCccCCc---cHHHHHHHhcCCc
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATG---SQQEQETISSYPL 200 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIitDG~i~d~---~~~~~~~iS~~Pl 200 (352)
. ...+.+.+.-.. +.. ...|.|++...++.+.+...+. .....+++++|||..++. ..+..+.++...+
T Consensus 59 ~----~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v 132 (161)
T cd00198 59 D----TDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGI 132 (161)
T ss_pred c----CCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCC
Confidence 1 233344333222 111 4778999999999999998753 456788999999988762 1233333377799
Q ss_pred EEEEEeecC-CCcchhccccC
Q 018644 201 SIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 201 SIiiVGVG~-~~f~~m~~LD~ 220 (352)
.|.+||+|+ .+-..++.|+.
T Consensus 133 ~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 133 TVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred EEEEEEcCCCCCHHHHHHHhc
Confidence 999999998 77777777775
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.17 E-value=4.9e-07 Score=83.50 Aligned_cols=45 Identities=29% Similarity=0.692 Sum_probs=36.0
Q ss_pred ccCCcccCcccCCC---------Ceee-cCCCCCchhhhhcCC----------CCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEK---------DTAF-ECGHMSCIKCALRMP----------QCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~---------~~~~-pCGH~~C~~C~~~~~----------~CP~CR~~i~~~ 347 (352)
+.+.+|.||+|... -.++ +|+|.||..|+.++. .||+||..+...
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 45689999998631 1456 999999999999772 399999998865
No 23
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.17 E-value=2.2e-05 Score=68.34 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=94.7
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
.++.+.+|-|.|=. | ...+.+-.++..++..+..+ .+.+++|+....... +.
T Consensus 3 ~~v~~vlD~S~SM~--~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~---~~---- 55 (171)
T cd01461 3 KEVVFVIDTSGSMS--G------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFS---PS---- 55 (171)
T ss_pred ceEEEEEECCCCCC--C------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeec---Cc----
Confidence 46778888887742 1 12566666777777888777 999999998643221 11
Q ss_pred CCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH---hcCCcEEEE
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI---SSYPLSIVL 204 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlSIii 204 (352)
+...+-+.+ +...+.+.++...|-|++..-|+.+.+..+.....=-++++||||..++ .++..+.+ .+.++.|..
T Consensus 56 ~~~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~i~i~~ 133 (171)
T cd01461 56 SVSATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN-ESQILKNVREALSGRIRLFT 133 (171)
T ss_pred ceeCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC-HHHHHHHHHHhcCCCceEEE
Confidence 011222222 3334445556678999999999999888765323346778999999877 45555555 334889999
Q ss_pred EeecC-CCcchhccccC
Q 018644 205 VGVGD-GPWESIQKFHD 220 (352)
Q Consensus 205 VGVG~-~~f~~m~~LD~ 220 (352)
||+|. .+...|+.+-+
T Consensus 134 i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 134 FGIGSDVNTYLLERLAR 150 (171)
T ss_pred EEeCCccCHHHHHHHHH
Confidence 99996 46677777764
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.16 E-value=9.8e-07 Score=61.65 Aligned_cols=36 Identities=39% Similarity=1.095 Sum_probs=30.2
Q ss_pred cccCcccCC---CCeee-cCCCCCchhhhhcCC----CCCCCcc
Q 018644 307 RCCICCEDE---KDTAF-ECGHMSCIKCALRMP----QCPFCRE 342 (352)
Q Consensus 307 ~C~IC~~~~---~~~~~-pCGH~~C~~C~~~~~----~CP~CR~ 342 (352)
.|.+|++.. ..+.+ +|||.||..|+.++. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999977 23445 999999999999986 8999985
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=8.9e-07 Score=88.97 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=43.0
Q ss_pred CcccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 297 PVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 297 ~~~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
+.-..+.....|+||.+...++++ +|||.||..|+..+ ..||+||..+..
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 444667788999999999999888 99999999999865 479999998865
No 26
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.10 E-value=5.4e-05 Score=67.56 Aligned_cols=148 Identities=9% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHH
Q 018644 86 YQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEA 161 (352)
Q Consensus 86 Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~ 161 (352)
+.++...+..+++.+. ++ .+-++.|+.... .+++++.. .-...+.+.+.-+........+|-|+++..+++
T Consensus 19 ~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~--~~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~ 93 (186)
T cd01471 19 VTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP--NSTNKDLALNAIRALLSLYYPNGSTNTTSALLV 93 (186)
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc--cccchHHHHHHHHHHHhCcCCCCCccHHHHHHH
Confidence 5566666666776663 45 899999997532 23444321 111223322222233333456889999999999
Q ss_pred HHHHHHHc----CCceEEEEEEeCCccCCccHHHHHHH---hcCCcEEEEEeecC-CCcchhccccCCC-CCcceeeEee
Q 018644 162 AVDIVEES----GGLHHVLVIITSGQVATGSQQEQETI---SSYPLSIVLVGVGD-GPWESIQKFHDKI-PALQFDNFHF 232 (352)
Q Consensus 162 a~~~a~~~----~~~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlSIiiVGVG~-~~f~~m~~LD~~~-~~r~rDnvqF 232 (352)
|.+...+. ...-.+++|||||..++ ...+.+.. -+.++-|.+||||. .+...|+.|-+.. .....+++-.
T Consensus 94 a~~~l~~~~~~r~~~~~~villTDG~~~~-~~~~~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~ 172 (186)
T cd01471 94 VEKHLFDTRGNRENAPQLVIIMTDGIPDS-KFRTLKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQ 172 (186)
T ss_pred HHHHhhccCCCcccCceEEEEEccCCCCC-CcchhHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeec
Confidence 98877541 12235678899999877 34333333 55689999999996 5778888887633 2233677777
Q ss_pred ecchhhh
Q 018644 233 VNFTAIM 239 (352)
Q Consensus 233 V~f~~~~ 239 (352)
.+|+++.
T Consensus 173 ~~~~~~~ 179 (186)
T cd01471 173 SSWSEVQ 179 (186)
T ss_pred CCHHHHH
Confidence 8887774
No 27
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.03 E-value=9.1e-07 Score=61.56 Aligned_cols=35 Identities=34% Similarity=0.811 Sum_probs=28.1
Q ss_pred cccCcccCCC---Ceee-cCCCCCchhhhhcC----CCCCCCc
Q 018644 307 RCCICCEDEK---DTAF-ECGHMSCIKCALRM----PQCPFCR 341 (352)
Q Consensus 307 ~C~IC~~~~~---~~~~-pCGH~~C~~C~~~~----~~CP~CR 341 (352)
+|+||++... .++. +|||.||..|+..+ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999653 2333 99999999999977 6899998
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.02 E-value=3.1e-06 Score=62.71 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=36.7
Q ss_pred CcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 306 QRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..|+||.+...+++. +|||.+|+.|+.++ ..||+|++++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999999888 99999999999976 579999999854
No 29
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.01 E-value=4.9e-05 Score=64.81 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=91.3
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc---cCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~---yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
++.+.+|.|.|=. ...++.+...+..++.. .+.+ .+.++.|+..... .+++..
T Consensus 2 di~~llD~S~Sm~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~ 58 (161)
T cd01450 2 DIVFLLDGSESVG--------------------PENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLND 58 (161)
T ss_pred cEEEEEeCCCCcC--------------------HHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCC
Confidence 5677888876631 01344444444444444 4457 9999999986432 233322
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeee-cCCCcHHHHHHHHHHHHHcC----CceEEEEEEeCCccCCccHHHHHHH---hc
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYF-GPTSYAPMVEAAVDIVEESG----GLHHVLVIITSGQVATGSQQEQETI---SS 197 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~-gPt~fapiI~~a~~~a~~~~----~~Y~VLlIitDG~i~d~~~~~~~~i---S~ 197 (352)
.. ..+.+.+....... .. |-|++...++.+.+...+.. ..-.++++||||..++ ..+..+++ .+
T Consensus 59 ~~----~~~~~~~~i~~~~~---~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~-~~~~~~~~~~~~~ 130 (161)
T cd01450 59 YK----SKDDLLKAVKNLKY---LGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDD-GGDPKEAAAKLKD 130 (161)
T ss_pred CC----CHHHHHHHHHhccc---CCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCC-CcchHHHHHHHHH
Confidence 11 34555554443221 12 47999999999998876542 4567889999998887 33444555 66
Q ss_pred CCcEEEEEeecCCCcchhccccC
Q 018644 198 YPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 198 ~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
..+-|++||+|..+.+.|++|-+
T Consensus 131 ~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 131 EGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CCCEEEEEeccccCHHHHHHHhC
Confidence 68999999999988988888865
No 30
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.01 E-value=2.9e-06 Score=57.53 Aligned_cols=38 Identities=37% Similarity=0.987 Sum_probs=30.9
Q ss_pred cccCcccCCCCee-e-cCCCCCchhhhhcC-----CCCCCCcccc
Q 018644 307 RCCICCEDEKDTA-F-ECGHMSCIKCALRM-----PQCPFCREEI 344 (352)
Q Consensus 307 ~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~-----~~CP~CR~~i 344 (352)
.|+||++...+.+ + +|||.||..|...+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999885544 4 69999999999854 5799999864
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.96 E-value=1.2e-06 Score=85.03 Aligned_cols=51 Identities=31% Similarity=0.644 Sum_probs=45.2
Q ss_pred CCcccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 296 GPVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 296 ~~~~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
-|+...+.+...|-||++.+.-+++ ||||.||..|+... +.||.|+.+++.
T Consensus 14 ipslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 4556677888999999999999998 99999999999976 689999998865
No 32
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.94 E-value=2.7e-06 Score=58.04 Aligned_cols=33 Identities=39% Similarity=1.015 Sum_probs=29.3
Q ss_pred ccCcccCCCCee-e-cCCCCCchhhhhcC------CCCCCC
Q 018644 308 CCICCEDEKDTA-F-ECGHMSCIKCALRM------PQCPFC 340 (352)
Q Consensus 308 C~IC~~~~~~~~-~-pCGH~~C~~C~~~~------~~CP~C 340 (352)
|+||++...+.. + +|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999987 6 99999999999876 469987
No 33
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.92 E-value=2.5e-06 Score=84.39 Aligned_cols=42 Identities=43% Similarity=1.027 Sum_probs=38.8
Q ss_pred CcccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCCe
Q 018644 306 QRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITTR 347 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~------~~CP~CR~~i~~~ 347 (352)
..|+||-|+.+|+-+ ||||++|..|+..+ ..||.||..|...
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 689999999999999 99999999999887 4699999999875
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.2e-06 Score=90.83 Aligned_cols=52 Identities=29% Similarity=0.703 Sum_probs=44.0
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC--eeecC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT--RRRVY 351 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~--~i~if 351 (352)
...+....|++|-++++++++ .|||.||..|.... ++||.|..++.. +.+||
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 345667999999999999999 99999999999854 789999999876 34444
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.2e-06 Score=78.26 Aligned_cols=44 Identities=34% Similarity=0.727 Sum_probs=38.0
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhcCC----CCCCCcc
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRMP----QCPFCRE 342 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~~----~CP~CR~ 342 (352)
.....+...|+||++...++.+ ||||.||+.|+..++ .||.||.
T Consensus 7 ~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3455678999999999999876 999999999999874 7999994
No 36
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.87 E-value=7.3e-05 Score=66.37 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=89.8
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++.+.||-|.|=+ |+ . ...-.+|+..+...+...+ .+ .+-++.|+.... .++++
T Consensus 3 ~~~v~~llD~SgSM~--~~------~---------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l 62 (176)
T cd01464 3 RLPIYLLLDTSGSMA--GE------P---------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPL 62 (176)
T ss_pred CCCEEEEEECCCCCC--Ch------H---------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCC
Confidence 467788999987732 11 1 1234566666665555432 34 899999998532 23444
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCc---------eEEEEEEeCCccCCccHHHHHH
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGL---------HHVLVIITSGQVATGSQQEQET 194 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~---------Y~VLlIitDG~i~d~~~~~~~~ 194 (352)
... . ......+...|-|++..-++++.+..++.... -.++++||||.-+|......+.
T Consensus 63 ~~~-------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~ 129 (176)
T cd01464 63 TPL-------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIER 129 (176)
T ss_pred ccH-------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHH
Confidence 321 0 11234567789999999999998886532111 1367999999987732222244
Q ss_pred H---hcCCcEEEEEeec-CCCcchhccccCC
Q 018644 195 I---SSYPLSIVLVGVG-DGPWESIQKFHDK 221 (352)
Q Consensus 195 i---S~~PlSIiiVGVG-~~~f~~m~~LD~~ 221 (352)
+ -..++.|..|||| +.+.+.|++|-+.
T Consensus 130 ~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 130 IKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred HHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 5 2336889999999 5788888888754
No 37
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.2e-06 Score=75.53 Aligned_cols=46 Identities=30% Similarity=0.676 Sum_probs=42.6
Q ss_pred CcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018644 306 QRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if 351 (352)
..|..|.+....+++ ||.|+ +|..|...+..||+|+.+....+.+|
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred ccceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 339999999999988 99999 99999998889999999999999887
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.81 E-value=5.3e-06 Score=79.23 Aligned_cols=52 Identities=33% Similarity=0.601 Sum_probs=43.9
Q ss_pred CCCcccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 295 MGPVSAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 295 ~~~~~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..|+-..+.....|-||-+..+-++. +|||.||..|+.+. ..||+||.+...
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cCcchhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34555666778999999999999998 99999999999986 679999987543
No 39
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.6e-06 Score=77.70 Aligned_cols=44 Identities=30% Similarity=0.856 Sum_probs=37.7
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhc-C-----CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALR-M-----PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~-~-----~~CP~CR~~i~~ 346 (352)
..+..|.+|++..-+++. +|||.||..|+.. + ..||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 357899999999999887 9999999999987 3 359999998754
No 40
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=97.80 E-value=0.00019 Score=62.65 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=88.7
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
+++.+.||.|.|=. + +..+.|-.++..+++.+.++ .+-+++|+..... .+++.+..
T Consensus 1 ~~v~~vlD~S~SM~--~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~ 57 (155)
T cd01466 1 VDLVAVLDVSGSMA--G------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMT 57 (155)
T ss_pred CcEEEEEECCCCCC--c------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccC
Confidence 35678889877632 0 13344444455556566566 8999999986432 23333211
Q ss_pred CCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC--CceEEEEEEeCCccCCccHHHHHHH--hcCCcEEE
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATGSQQEQETI--SSYPLSIV 203 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~--~~Y~VLlIitDG~i~d~~~~~~~~i--S~~PlSIi 203 (352)
+ .+- +...+.+..+...|-|+...-++.+.+..++.. ..-.++++||||..++ . ...+ .+.++.|.
T Consensus 58 ~--~~~----~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~-~---~~~~~~~~~~v~v~ 127 (155)
T cd01466 58 A--KGK----RSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH-G---AVVLRADNAPIPIH 127 (155)
T ss_pred H--HHH----HHHHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc-c---hhhhcccCCCceEE
Confidence 1 112 223444445677888999999999998876431 2236789999998776 2 2223 55699999
Q ss_pred EEeec-CCCcchhccccC
Q 018644 204 LVGVG-DGPWESIQKFHD 220 (352)
Q Consensus 204 iVGVG-~~~f~~m~~LD~ 220 (352)
.||+| +.+...|++|=+
T Consensus 128 ~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 128 TFGLGASHDPALLAFIAE 145 (155)
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 99999 567777777653
No 41
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.77 E-value=0.00022 Score=65.01 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=92.9
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCC--C-CcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRD--E-GVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~--~-~~f~~ 123 (352)
..++.+.||-|.|=.. . +....+..+.|..++..++..+..+ .+-++.|+...... . .+++.
T Consensus 20 ~~~vv~vlD~SgSM~~-------------~-~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~ 85 (206)
T cd01456 20 PPNVAIVLDNSGSMRE-------------V-DGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPK 85 (206)
T ss_pred CCcEEEEEeCCCCCcC-------------C-CCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccc
Confidence 4789999999877321 1 1122456666777777777777667 99999999864321 1 11211
Q ss_pred CCCCCCCCCHH-HHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCcc--HHHHHHH-hc-
Q 018644 124 QENDSPCQGFE-HVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGS--QQEQETI-SS- 197 (352)
Q Consensus 124 ~~~~p~~~G~~-gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~--~~~~~~i-S~- 197 (352)
.+--....+.. .-.+...+.+..+. ..|-|+...-|+.+.+..+ . ..-..+|+||||.-++-. .+..+.+ ..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~-~-~~~~~iillTDG~~~~~~~~~~~~~~~~~~~ 163 (206)
T cd01456 86 GCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-P-GRVNVVVLITDGEDTCGPDPCEVARELAKRR 163 (206)
T ss_pred cccccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC-C-CCcceEEEEcCCCccCCCCHHHHHHHHHHhc
Confidence 11000111210 11233344566666 7889999999999888765 2 232567899999876520 1222222 33
Q ss_pred ---CCcEEEEEeecCC-Ccchhcccc
Q 018644 198 ---YPLSIVLVGVGDG-PWESIQKFH 219 (352)
Q Consensus 198 ---~PlSIiiVGVG~~-~f~~m~~LD 219 (352)
-++.|.+||+|.. +-..|+++=
T Consensus 164 ~~~~~i~i~~igiG~~~~~~~l~~iA 189 (206)
T cd01456 164 TPAPPIKVNVIDFGGDADRAELEAIA 189 (206)
T ss_pred CCCCCceEEEEEecCcccHHHHHHHH
Confidence 4899999999975 455555553
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.73 E-value=2e-05 Score=51.42 Aligned_cols=33 Identities=42% Similarity=1.053 Sum_probs=28.5
Q ss_pred ccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCC
Q 018644 308 CCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFC 340 (352)
Q Consensus 308 C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~C 340 (352)
|+||++...++++ +|||.||..|...+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999888776 99999999999854 569987
No 43
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=97.71 E-value=0.00055 Score=59.47 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=89.2
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
+++.+.+|.|.|=. . ..++.|..++..++..+..+ .+-++.|+..... ++++.+.
T Consensus 1 ~~~~~vlD~S~SM~-----------------~---~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~- 56 (170)
T cd01465 1 LNLVFVIDRSGSMD-----------------G---PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV- 56 (170)
T ss_pred CcEEEEEECCCCCC-----------------C---hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc-
Confidence 57889999997732 0 12566667777788888777 9999999986322 2332211
Q ss_pred CCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC--CceEEEEEEeCCccCCc---cHHHHHHH---hcCC
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATG---SQQEQETI---SSYP 199 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~--~~Y~VLlIitDG~i~d~---~~~~~~~i---S~~P 199 (352)
...+.+. +.+.+++..|.|++..-++.+.+..++.. ..--.++++|||.-++- .++..+.+ .+..
T Consensus 57 ---~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~ 129 (170)
T cd01465 57 ---RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESG 129 (170)
T ss_pred ---chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCC
Confidence 1223333 33444556889999999999988876532 22255689999986531 13334444 2457
Q ss_pred cEEEEEeecCC-Ccchhcccc
Q 018644 200 LSIVLVGVGDG-PWESIQKFH 219 (352)
Q Consensus 200 lSIiiVGVG~~-~f~~m~~LD 219 (352)
+-|..||+|.. +...|+++=
T Consensus 130 v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 130 ITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred eEEEEEEeCCCcCHHHHHHHH
Confidence 88899999842 555565553
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.63 E-value=1.4e-05 Score=55.93 Aligned_cols=26 Identities=35% Similarity=0.881 Sum_probs=17.0
Q ss_pred ccCcccCCCC----ee-ecCCCCCchhhhhcC
Q 018644 308 CCICCEDEKD----TA-FECGHMSCIKCALRM 334 (352)
Q Consensus 308 C~IC~~~~~~----~~-~pCGH~~C~~C~~~~ 334 (352)
|+||.+ ..+ ++ ++|||.+|.+|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 666 55 499999999999987
No 45
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.58 E-value=0.00086 Score=58.78 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHH
Q 018644 86 YQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVD 164 (352)
Q Consensus 86 Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~ 164 (352)
..+++..+..-+....++ .+.++.|+.... ..|+++. ....+.++++-.+.- ...|.|+...-|+.+.+
T Consensus 21 ~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~----~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~ 90 (164)
T cd01482 21 VRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA----YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVRE 90 (164)
T ss_pred HHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC----CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHH
Confidence 344444444444333356 999999998742 2355531 234556666554321 14688999988888876
Q ss_pred HHHHc-----CCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecCCCcchhccccC
Q 018644 165 IVEES-----GGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 165 ~a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
...+. ...-.++||||||.-+|-..+..+.+-+..+.|+.||+|+.+-..|++|-+
T Consensus 91 ~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 91 KNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCcCCHHHHHHHhC
Confidence 54221 124568899999987652223333334568899999999988777777765
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.57 E-value=3e-05 Score=58.51 Aligned_cols=44 Identities=30% Similarity=0.750 Sum_probs=26.8
Q ss_pred cccCCcccCcccCCCCee-e-cCCCCCchhhhhcC--CCCCCCccccC
Q 018644 302 VAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM--PQCPFCREEIT 345 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~--~~CP~CR~~i~ 345 (352)
+++...|.+|.+..+.++ + .|.|.||..|+... ..||+|+.|-.
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 456789999999999986 4 99999999999987 67999998864
No 47
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.57 E-value=0.0012 Score=57.24 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=84.7
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCC---C-ccceeeecCCCCCCCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~---d-~ip~~GFGa~~~~~~~~f~~~ 124 (352)
+++.+.+|-|.|-. ..|+++...+..++..+.. . .+.+.+|+..... .-.|+++
T Consensus 1 ldv~~llD~S~Sm~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~-~~~~~l~ 58 (163)
T cd01476 1 LDLLFVLDSSGSVR---------------------GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQ-RVRFNLP 58 (163)
T ss_pred CCEEEEEeCCcchh---------------------hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCce-EEEecCC
Confidence 35678888876632 0144445555555555543 5 9999999985321 1135554
Q ss_pred CCCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHHHc----CCceEEEEEEeCCccCCccHHHHHHH-hcC
Q 018644 125 ENDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES----GGLHHVLVIITSGQVATGSQQEQETI-SSY 198 (352)
Q Consensus 125 ~~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~~~----~~~Y~VLlIitDG~i~d~~~~~~~~i-S~~ 198 (352)
.. ...+.++++-.. ++ ..|.|+...-|+.+.+...+. ...-.+++++|||.-++-.....+.+ +..
T Consensus 59 ~~----~~~~~l~~~i~~----l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~~~ 130 (163)
T cd01476 59 KH----NDGEELLEKVDN----LRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRAVP 130 (163)
T ss_pred CC----CCHHHHHHHHHh----CccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhhcC
Confidence 21 233444443332 33 367899999999998887421 12237889999998765222333444 437
Q ss_pred CcEEEEEeecCC---Ccchhccc
Q 018644 199 PLSIVLVGVGDG---PWESIQKF 218 (352)
Q Consensus 199 PlSIiiVGVG~~---~f~~m~~L 218 (352)
-+.|+.||+|+. +...|..+
T Consensus 131 ~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 131 NIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred CCEEEEEECCCccccCHHHHHHH
Confidence 789999999986 44444444
No 48
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.52 E-value=0.0016 Score=57.36 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=82.2
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDS 128 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~~p 128 (352)
+++.+.||.|.|=.. . ++ ...+..+.|...+...+.....|.+-++.|+..... .+++.
T Consensus 3 ~~vv~vlD~S~SM~~--~--------~~----~~~~r~~~a~~~~~~~~~~~~~~~v~lv~f~~~~~~---~~~~~---- 61 (180)
T cd01467 3 RDIMIALDVSGSMLA--Q--------DF----VKPSRLEAAKEVLSDFIDRRENDRIGLVVFAGAAFT---QAPLT---- 61 (180)
T ss_pred ceEEEEEECCccccc--c--------cC----CCCCHHHHHHHHHHHHHHhCCCCeEEEEEEcCCeee---ccCCC----
Confidence 688999999988532 0 00 012444555555556666655448999999875421 22332
Q ss_pred CCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCc---cHHHHHHHhcCCcEEEEE
Q 018644 129 PCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATG---SQQEQETISSYPLSIVLV 205 (352)
Q Consensus 129 ~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~---~~~~~~~iS~~PlSIiiV 205 (352)
.+.+.+.+ .-+.+......|.|+...-|+.+.+...+....-.++++||||.-++- ..+..+.+.+..+.|..|
T Consensus 62 --~~~~~~~~-~l~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i 138 (180)
T cd01467 62 --LDRESLKE-LLEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTI 138 (180)
T ss_pred --ccHHHHHH-HHHHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 12222222 112222334578899988888888877654444578899999976531 112233335678899999
Q ss_pred eecC
Q 018644 206 GVGD 209 (352)
Q Consensus 206 GVG~ 209 (352)
|+|+
T Consensus 139 ~ig~ 142 (180)
T cd01467 139 GVGK 142 (180)
T ss_pred EecC
Confidence 9997
No 49
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.49 E-value=0.00066 Score=58.18 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=93.0
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCCCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSP 129 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~~p~ 129 (352)
++++.+|-|.|=.+. ....+...++..++..++..+..+.|.+++|+... ...++++
T Consensus 1 dvv~v~D~SgSM~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~f~~~~---~~~~~~t----- 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGY---------------DGNRTRIDQAKDALNELLANLPGDRVGLVSFSDSS---RTLSPLT----- 57 (172)
T ss_dssp EEEEEEE-SGGGGTT---------------TSSS-HHHHHHHHHHHHHHHHTTSEEEEEEESTSC---EEEEEEE-----
T ss_pred CEEEEEECCcccCCC---------------CCCCcHHHHHHHHHHHHHHHCCCCEEEEEEecccc---ccccccc-----
Confidence 467888988775321 11257888999999999998764499999999853 1123332
Q ss_pred CCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecC
Q 018644 130 CQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGD 209 (352)
Q Consensus 130 ~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~ 209 (352)
.+.+.+.++-.+..++....|.|++...|+.+.+........=-.+|+||||.-+....++.+.+.+..+.|.+||+|.
T Consensus 58 -~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~ 136 (172)
T PF13519_consen 58 -SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGS 136 (172)
T ss_dssp -SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-
T ss_pred -ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECC
Confidence 4677777777776666677889999999999999887654333555789999765411222222277889999999997
Q ss_pred CCcc--hhcccc
Q 018644 210 GPWE--SIQKFH 219 (352)
Q Consensus 210 ~~f~--~m~~LD 219 (352)
..-. .|++|-
T Consensus 137 ~~~~~~~l~~la 148 (172)
T PF13519_consen 137 DSDANEFLQRLA 148 (172)
T ss_dssp TT-EHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 6643 444443
No 50
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.44 E-value=0.001 Score=70.48 Aligned_cols=126 Identities=20% Similarity=0.134 Sum_probs=81.7
Q ss_pred hHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHH
Q 018644 85 PYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAV 163 (352)
Q Consensus 85 ~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~ 163 (352)
..++|-.++..+|....++ .|-++.|+...... ++.. ...+ ++-++...+.+.+++..|-|++.+.|+.+.
T Consensus 288 ~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~~----~~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~ 359 (596)
T TIGR03788 288 SIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPVP----VPAT-AHNLARARQFVAGLQADGGTEMAGALSAAL 359 (596)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---cccc----ccCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Confidence 3566777777777887777 99999999875322 1110 0011 122334445566677789999999999998
Q ss_pred HHHHHcC-CceEEEEEEeCCccCCccHHHHHHH-hc-CCcEEEEEeecCC-Ccchhcccc
Q 018644 164 DIVEESG-GLHHVLVIITSGQVATGSQQEQETI-SS-YPLSIVLVGVGDG-PWESIQKFH 219 (352)
Q Consensus 164 ~~a~~~~-~~Y~VLlIitDG~i~d~~~~~~~~i-S~-~PlSIiiVGVG~~-~f~~m~~LD 219 (352)
+...... ..--.+++||||.+.| ..+..+.+ .+ -...|..||||+. +...|+.|-
T Consensus 360 ~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 360 RDDGPESSGALRQVVFLTDGAVGN-EDALFQLIRTKLGDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred HhhcccCCCceeEEEEEeCCCCCC-HHHHHHHHHHhcCCceEEEEEeCCCcCHHHHHHHH
Confidence 7643221 2223457899999988 46666666 22 3467788999975 666677664
No 51
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=4.9e-05 Score=74.44 Aligned_cols=45 Identities=29% Similarity=0.748 Sum_probs=40.2
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.++..|+||+..+.+++| ||+|.-|..|+.+. +.|-.|+..+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 466899999999999999 99999999999975 7899999988753
No 52
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=97.33 E-value=0.0025 Score=56.37 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=70.9
Q ss_pred HHHHHHHHhccccccCCCccceeeecCCCCCCC--CcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHH
Q 018644 86 YQEVIYITGKELVLFDGDCIRCYGFGDDTTRDE--GVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAV 163 (352)
Q Consensus 86 Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~--~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~ 163 (352)
-.+|+..+...+.. ..|.+-+|+|+...+... ..+...+-+. . ...+.++.+..+...|-|++.+-|+.+.
T Consensus 22 ak~a~~~l~~~l~~-~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~ 94 (174)
T cd01454 22 AKKAAVLLAEALEA-CGVPHAILGFTTDAGGRERVRWIKIKDFDE---S---LHERARKRLAALSPGGNTRDGAAIRHAA 94 (174)
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEEecCCCCCccceEEEEecCccc---c---cchhHHHHHHccCCCCCCcHHHHHHHHH
Confidence 34444455554444 223899999987632111 1121101010 1 0122244445566778899999999999
Q ss_pred HHHHHcCCceEEEEEEeCCccCCccH-------HHHHH---H---hcCCcEEEEEeecCCCc
Q 018644 164 DIVEESGGLHHVLVIITSGQVATGSQ-------QEQET---I---SSYPLSIVLVGVGDGPW 212 (352)
Q Consensus 164 ~~a~~~~~~Y~VLlIitDG~i~d~~~-------~~~~~---i---S~~PlSIiiVGVG~~~f 212 (352)
+...+....=-++++||||.-++. . ...++ + -+..+.+..||||+...
T Consensus 95 ~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 95 ERLLARPEKRKILLVISDGEPNDL-DYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred HHHhcCCCcCcEEEEEeCCCcCcc-cccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 887654334467899999988752 1 12233 3 56689999999998653
No 53
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.30 E-value=0.0012 Score=56.91 Aligned_cols=140 Identities=13% Similarity=0.178 Sum_probs=85.6
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p 128 (352)
++++-||.+.|... .. ..-..|++. +++...+. .|-++.||.........
T Consensus 2 ~vvilvD~S~Sm~g-----------------~~-~~~k~al~~---~l~~L~~~d~fnii~f~~~~~~~~~~-------- 52 (155)
T PF13768_consen 2 DVVILVDTSGSMSG-----------------EK-ELVKDALRA---ILRSLPPGDRFNIIAFGSSVRPLFPG-------- 52 (155)
T ss_pred eEEEEEeCCCCCCC-----------------cH-HHHHHHHHH---HHHhCCCCCEEEEEEeCCEeeEcchh--------
Confidence 46788998888631 11 334445554 44555556 99999999854322211
Q ss_pred CCCCHHHHHHHHHhhCCceee-ecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH--hcCCcEEEEE
Q 018644 129 PCQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI--SSYPLSIVLV 205 (352)
Q Consensus 129 ~~~G~~gvl~~Y~~~l~~v~l-~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i--S~~PlSIiiV 205 (352)
...--+.-++.-.+-+.+++. .|.|++.+-++.|.+..... +.-..+++||||..++..+++.+.+ ..-.+-|..+
T Consensus 53 ~~~~~~~~~~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~~~~-~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~ 131 (155)
T PF13768_consen 53 LVPATEENRQEALQWIKSLEANSGGTDLLAALRAALALLQRP-GCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTF 131 (155)
T ss_pred HHHHhHHHHHHHHHHHHHhcccCCCccHHHHHHHHHHhcccC-CCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEE
Confidence 000001222333444555777 89999999999888765222 2345558899999644234555666 3346888899
Q ss_pred eecC-CCcchhcccc
Q 018644 206 GVGD-GPWESIQKFH 219 (352)
Q Consensus 206 GVG~-~~f~~m~~LD 219 (352)
|+|. .+...|++|=
T Consensus 132 ~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 132 GIGSDADADFLRELA 146 (155)
T ss_pred EECChhHHHHHHHHH
Confidence 9997 5666666653
No 54
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.26 E-value=0.0015 Score=56.70 Aligned_cols=142 Identities=15% Similarity=0.244 Sum_probs=86.1
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccc---ccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV---LFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~---~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
++++.||-|.|-+ .+.++++...+-.++. ..+.. .+-+.-||.... ..|+|+.
T Consensus 1 DivflvD~S~sm~--------------------~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~ 57 (178)
T PF00092_consen 1 DIVFLVDTSGSMS--------------------GDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTD 57 (178)
T ss_dssp EEEEEEE-STTSC--------------------HHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTS
T ss_pred CEEEEEeCCCCCc--------------------hHHHHHHHHHHHHHHHhhhccccccccceeeeecccc---ccccccc
Confidence 3577888887753 1234444444444444 55566 999999998754 3455532
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc-----CCceEEEEEEeCCccCCccHHHHHHH---hc
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETI---SS 197 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~i---S~ 197 (352)
. ...+.+++.= ....-..+|-|+++..|++|.+..... .....++++||||..++-.....+.. ..
T Consensus 58 ~----~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (178)
T PF00092_consen 58 Y----QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS 131 (178)
T ss_dssp H----SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH
T ss_pred c----cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh
Confidence 1 2344554432 234455778999999999999986432 45689999999999988311222222 34
Q ss_pred CCcEEEEEeecCCCcchhccccC
Q 018644 198 YPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 198 ~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
+-+.++.||+++.+-..++.|-+
T Consensus 132 ~~i~~~~ig~~~~~~~~l~~la~ 154 (178)
T PF00092_consen 132 NGIKVIAIGIDNADNEELRELAS 154 (178)
T ss_dssp CTEEEEEEEESCCHHHHHHHHSH
T ss_pred cCcEEEEEecCcCCHHHHHHHhC
Confidence 55666666664566666666653
No 55
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.24 E-value=0.0033 Score=54.80 Aligned_cols=122 Identities=19% Similarity=0.283 Sum_probs=74.9
Q ss_pred HHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceee-ecCCCcHHHHHHHHHH
Q 018644 88 EVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAAVDI 165 (352)
Q Consensus 88 ~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l-~gPt~fapiI~~a~~~ 165 (352)
+++..+..-|.....+ .+-++-|+..... +++++. ....+.+.++ +.++.. .|.|+...-++.|.+.
T Consensus 23 ~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~----~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~ 91 (164)
T cd01472 23 DFVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT----YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVREN 91 (164)
T ss_pred HHHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC----CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHH
Confidence 3444444434333345 8999999976432 244431 1234444443 333443 7889999999999887
Q ss_pred HHHc-----CCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecCCCcchhccccC
Q 018644 166 VEES-----GGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 166 a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
..+. ...=.++++||||.-++-.......+.+..+.|..||+|+.+.+.|+.+=+
T Consensus 92 l~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 92 LFTEASGSREGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred hCCcccCCCCCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 6531 122367788999976552111122235578899999999988888887754
No 56
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.18 E-value=0.0027 Score=57.32 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=84.0
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
+++.+.||-|.|=+ +...+.-.+++..+..-|..+..+ .+-++.|+.... .+|++..
T Consensus 1 ~di~~vlD~SgSM~-----------------~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~-- 58 (198)
T cd01470 1 LNIYIALDASDSIG-----------------EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRD-- 58 (198)
T ss_pred CcEEEEEECCCCcc-----------------HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEeccc--
Confidence 46788889877632 011233344455544444445445 999999988632 2344432
Q ss_pred CCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHHHc----C----CceEEEEEEeCCccCCc--cHHHHHHH-
Q 018644 128 SPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES----G----GLHHVLVIITSGQVATG--SQQEQETI- 195 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~~~----~----~~Y~VLlIitDG~i~d~--~~~~~~~i- 195 (352)
+.-...+.++++-...-.... ..|-|++..-|+++.+..... . ..-.++++||||+-++- ..+..+.+
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~ 138 (198)
T cd01470 59 FNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIK 138 (198)
T ss_pred CCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHH
Confidence 111234445443333222221 235689998888887653211 0 12378899999987631 12222222
Q ss_pred h------------cCCcEEEEEeecC-CCcchhccccC
Q 018644 196 S------------SYPLSIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 196 S------------~~PlSIiiVGVG~-~~f~~m~~LD~ 220 (352)
. ...+.|..||||+ .+.+.|+++=.
T Consensus 139 ~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 139 NLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 1 1258899999996 47888888865
No 57
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.09 E-value=0.00018 Score=55.61 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=34.4
Q ss_pred cCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018644 304 EAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 347 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~~ 347 (352)
+...|+||.+...++++ ||||.+++.|+.++ ..||+||+++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 57899999999999998 99999999999876 4699999998764
No 58
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.07 E-value=0.014 Score=53.11 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=87.6
Q ss_pred HHHHHhccccccC---CC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHH
Q 018644 89 VIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVD 164 (352)
Q Consensus 89 ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~ 164 (352)
++..+-.+++.|+ .+ .+.+.=|+.... ..++|+.. .-..-+.++++=++..+.....|-|+...-|+++.+
T Consensus 22 ~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~--~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~ 96 (192)
T cd01473 22 VIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE--ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLK 96 (192)
T ss_pred HHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc--cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4444555555555 34 888889987542 23455421 112345565554443333344688999999998877
Q ss_pred HHHHcC----CceEEEEEEeCCccCCcc-HHHHHH---HhcCCcEEEEEeecCCCcchhccccCCC-CCcceeeEeeecc
Q 018644 165 IVEESG----GLHHVLVIITSGQVATGS-QQEQET---ISSYPLSIVLVGVGDGPWESIQKFHDKI-PALQFDNFHFVNF 235 (352)
Q Consensus 165 ~a~~~~----~~Y~VLlIitDG~i~d~~-~~~~~~---iS~~PlSIiiVGVG~~~f~~m~~LD~~~-~~r~rDnvqFV~f 235 (352)
...... ..=-|+|+||||.-++.. ....++ +-+..+.|..||||..+-..++.+=+.- ......+|-..+|
T Consensus 97 ~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f 176 (192)
T cd01473 97 NYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEW 176 (192)
T ss_pred HhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecch
Confidence 754321 125789999999887621 123222 2678999999999998766666665431 2222345555666
Q ss_pred hhhh
Q 018644 236 TAIM 239 (352)
Q Consensus 236 ~~~~ 239 (352)
+++.
T Consensus 177 ~~l~ 180 (192)
T cd01473 177 NNLN 180 (192)
T ss_pred hhHH
Confidence 6664
No 59
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=3.2e-05 Score=75.77 Aligned_cols=50 Identities=32% Similarity=0.650 Sum_probs=41.2
Q ss_pred cccccCCcccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCccccCCeee
Q 018644 300 AEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCREEITTRRR 349 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~-----~~CP~CR~~i~~~i~ 349 (352)
..+..+..|+||++..+.... -|+|.||..|++.- ..||.||+...+...
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 345667999999998877554 99999999999965 579999999887643
No 60
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.05 E-value=0.0049 Score=55.12 Aligned_cols=142 Identities=16% Similarity=0.220 Sum_probs=84.5
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC-CC-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD-GD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd-~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++.+.||-|.|=+ ++ +.+++..+-.++..|. ++ ++-++.|+... ..+|+|+.
T Consensus 4 ~~Dvv~llD~SgSm~--~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~ 59 (185)
T cd01474 4 HFDLYFVLDKSGSVA--AN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTD 59 (185)
T ss_pred ceeEEEEEeCcCchh--hh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccc
Confidence 468889999887732 10 1112222233333333 34 99999998753 23466643
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHH--cCCc--eEEEEEEeCCccCCc-cHHHHH---HHhc
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--SGGL--HHVLVIITSGQVATG-SQQEQE---TISS 197 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~--~~~~--Y~VLlIitDG~i~d~-~~~~~~---~iS~ 197 (352)
.. +.+.++.. .++.+...|-|+...-|+.|.+.... .+.. =.++++||||.-++. .....+ .+-+
T Consensus 60 ~~------~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~ 132 (185)
T cd01474 60 DS------SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRK 132 (185)
T ss_pred cH------HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHH
Confidence 21 12322221 24455567899999999999876532 1111 177899999988431 122222 2345
Q ss_pred CCcEEEEEeecCCCcchhccccC
Q 018644 198 YPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 198 ~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
..+-|..||||+.+...|+.+=+
T Consensus 133 ~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 133 LGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred cCCEEEEEeechhhHHHHHHHhC
Confidence 67889999998888888887765
No 61
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.05 E-value=0.0065 Score=54.51 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=69.0
Q ss_pred ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHHHc--CCceEEEEEEe
Q 018644 104 CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES--GGLHHVLVIIT 180 (352)
Q Consensus 104 ~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIit 180 (352)
.+-++-|+.... ..|+++.. -...+.+. +.+.+++ ..|.|+...-|++|.+..... ...=.++++||
T Consensus 48 rvglv~fs~~~~---~~~~l~~~---~~~~~~l~----~~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillT 117 (186)
T cd01480 48 RVGVVQYSDQQE---VEAGFLRD---IRNYTSLK----EAVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVIT 117 (186)
T ss_pred EEEEEEecCCce---eeEecccc---cCCHHHHH----HHHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEe
Confidence 889999987532 23555421 12344443 3444454 478999999999998887641 22346788999
Q ss_pred CCccCCc-cHHHHHHH---hcCCcEEEEEeecCCCcchhccccC
Q 018644 181 SGQVATG-SQQEQETI---SSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 181 DG~i~d~-~~~~~~~i---S~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
||.-++. .....+++ .+..+.|..||||..+-..|+++=+
T Consensus 118 DG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~ 161 (186)
T cd01480 118 DGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIAC 161 (186)
T ss_pred CCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHc
Confidence 9976431 12223333 5779999999999976666666654
No 62
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.04 E-value=0.0079 Score=63.25 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=89.2
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCC---C-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~---d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
++.+.+.||-|.|=+ + .|-.++|...+..++..++. . .+-+..|+.... ..|++
T Consensus 42 ~lDIvFLLD~SgSMg-------------~------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL 99 (576)
T PTZ00441 42 EVDLYLLVDGSGSIG-------------Y------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRL 99 (576)
T ss_pred CceEEEEEeCCCccC-------------C------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEec
Confidence 578888888776632 1 13356677777777777743 2 555568877532 24555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC---CceEEEEEEeCCccCCccHHHHHHH---hc
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETI---SS 197 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~---~~Y~VLlIitDG~i~d~~~~~~~~i---S~ 197 (352)
... .-...+.++.+-.+....+...|-|++...|..+.+...+.. ..=-+++|||||.-++ ..+..+++ .+
T Consensus 100 ~s~--~s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns-~~dvleaAq~LR~ 176 (576)
T PTZ00441 100 GSG--ASKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS-KYRALEESRKLKD 176 (576)
T ss_pred CCC--ccccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC-cccHHHHHHHHHH
Confidence 421 112345666666666666777899999999999887765431 1236888999998655 23333333 66
Q ss_pred CCcEEEEEeecCC
Q 018644 198 YPLSIVLVGVGDG 210 (352)
Q Consensus 198 ~PlSIiiVGVG~~ 210 (352)
..+-|+.||||.+
T Consensus 177 ~GVeI~vIGVG~g 189 (576)
T PTZ00441 177 RNVKLAVIGIGQG 189 (576)
T ss_pred CCCEEEEEEeCCC
Confidence 7889999999974
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.02 E-value=0.00039 Score=68.09 Aligned_cols=47 Identities=36% Similarity=0.796 Sum_probs=39.6
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCCe
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITTR 347 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~------~~CP~CR~~i~~~ 347 (352)
.-++...|.||-+..+-+.+ ||+|.+|..|+.++ ..||+||..-..+
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 34567899999998887776 99999999999987 5799999876654
No 64
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.01 E-value=0.00024 Score=55.03 Aligned_cols=36 Identities=33% Similarity=0.882 Sum_probs=27.5
Q ss_pred CcccCcccCC-------------CCeee-cCCCCCchhhhhcC----CCCCCCc
Q 018644 306 QRCCICCEDE-------------KDTAF-ECGHMSCIKCALRM----PQCPFCR 341 (352)
Q Consensus 306 ~~C~IC~~~~-------------~~~~~-pCGH~~C~~C~~~~----~~CP~CR 341 (352)
..|.||++.. ..+++ +|||.|-..|+.++ ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3499999865 22344 99999999999976 6799998
No 65
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00028 Score=68.06 Aligned_cols=42 Identities=26% Similarity=0.703 Sum_probs=35.1
Q ss_pred cCCcccCcccCCCC----eeecCCCCCchhhhhcC-----CCCCCCccccC
Q 018644 304 EAQRCCICCEDEKD----TAFECGHMSCIKCALRM-----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~~~----~~~pCGH~~C~~C~~~~-----~~CP~CR~~i~ 345 (352)
...+|.||++.... +++||-|.|=..|..++ .+||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34899999997654 34499999999999988 57999999875
No 66
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=96.94 E-value=0.02 Score=49.19 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=76.1
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCCCCCC
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSPC 130 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~~p~~ 130 (352)
+.+.||.|.|=. +. ..-....++..++..+.. ..|.+-++.|+... ....+. .-
T Consensus 3 v~illD~SgSM~--~~---------------k~~~a~~~~~~l~~~~~~-~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 3 VILLVDQSGSMY--GA---------------PEEVAKAVALALLRIALA-ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred EEEEEECCCCCC--CC---------------HHHHHHHHHHHHHHHHHH-cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 578899887732 10 012234445555555544 22378889998871 111121 11
Q ss_pred CCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCC-ccCCccHHHH--HHH-hcCCcEEEEEe
Q 018644 131 QGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSG-QVATGSQQEQ--ETI-SSYPLSIVLVG 206 (352)
Q Consensus 131 ~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG-~i~d~~~~~~--~~i-S~~PlSIiiVG 206 (352)
..+..+++.. ..+...|-|++.+.++.+.+..++....=.+++||||| +-.+ ..+.. ..+ ....+-|..||
T Consensus 57 ~~~~~~~~~l----~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 131 (152)
T cd01462 57 DDLEEPVEFL----SGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV-SDELLREVELKRSRVARFVALA 131 (152)
T ss_pred ccHHHHHHHH----hcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CHHHHHHHHHHHhcCcEEEEEE
Confidence 3455555443 34566899999999999998877543222577999999 4444 23332 222 45567788888
Q ss_pred ecCC
Q 018644 207 VGDG 210 (352)
Q Consensus 207 VG~~ 210 (352)
||+.
T Consensus 132 ~g~~ 135 (152)
T cd01462 132 LGDH 135 (152)
T ss_pred ecCC
Confidence 8864
No 67
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=96.90 E-value=0.0087 Score=53.99 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=85.9
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc---CCC-ccceeeecCCCCCCCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y---d~d-~ip~~GFGa~~~~~~~~f~~~ 124 (352)
.++++++|-|.|=. .. ...+|..+.|-..+..++..+ ... .+-++.|++...+. +.+++
T Consensus 4 r~ivi~lD~S~SM~-------------a~--D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT 66 (183)
T cd01453 4 RHLIIVIDCSRSME-------------EQ--DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLT 66 (183)
T ss_pred eEEEEEEECcHHHh-------------cC--CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCC
Confidence 46789999987732 11 234789999999999999876 334 78899996543322 23333
Q ss_pred CCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCC--ceEEEEEEeCCccCCc--cHHHHHHHhcCCc
Q 018644 125 ENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQVATG--SQQEQETISSYPL 200 (352)
Q Consensus 125 ~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~--~Y~VLlIitDG~i~d~--~~~~~~~iS~~Pl 200 (352)
. | .+.+++.-+.. +...|-|++..-|+.|.+..++... +=.|+|++|||.-.|. ..+..+.+.+..+
T Consensus 67 ~-D-----~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I 137 (183)
T cd01453 67 G-N-----PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKKENI 137 (183)
T ss_pred C-C-----HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCc
Confidence 2 1 22333333222 2445679999999999888765321 2347888999876652 1123333355678
Q ss_pred EEEEEeecCC
Q 018644 201 SIVLVGVGDG 210 (352)
Q Consensus 201 SIiiVGVG~~ 210 (352)
-|-+||||.+
T Consensus 138 ~v~~IgiG~~ 147 (183)
T cd01453 138 RVSVIGLSAE 147 (183)
T ss_pred EEEEEEechH
Confidence 8888999853
No 68
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00036 Score=68.94 Aligned_cols=45 Identities=24% Similarity=0.726 Sum_probs=35.0
Q ss_pred ccccCCcccCcccCCCC-------------ee-ecCCCCCchhhhhcC----CCCCCCccccC
Q 018644 301 EVAEAQRCCICCEDEKD-------------TA-FECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~-------------~~-~pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
...++..|.||+|.... +- +||||.+=-.|.+.+ +.||+||.++.
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 34678999999996221 22 499999989999876 78999999943
No 69
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00095 Score=63.66 Aligned_cols=45 Identities=27% Similarity=0.699 Sum_probs=37.9
Q ss_pred ccccCCcccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccC
Q 018644 301 EVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEIT 345 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~------~~CP~CR~~i~ 345 (352)
..++.-+|++|-+.++.+.. +|||.+|..|+..- -.||.|.++..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999999998765 89999999999864 36999998876
No 70
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.79 E-value=0.00059 Score=66.51 Aligned_cols=46 Identities=28% Similarity=0.765 Sum_probs=39.5
Q ss_pred cccCCcccCcccCCCCeeecC--CCCCchhhhhcC-CCCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKDTAFEC--GHMSCIKCALRM-PQCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~pC--GH~~C~~C~~~~-~~CP~CR~~i~~~ 347 (352)
..+-.+||||++.-..+.+.| ||+.|..|..++ ..||.||.++..+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH
Confidence 456699999999999999966 899999999555 7899999999843
No 71
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.65 E-value=0.021 Score=52.76 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=86.0
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~~ 124 (352)
+.+.+.||-|.|=+ ...++++...+..++..++ .. .+-+.-|+.... ..|+|+
T Consensus 3 ~DlvfllD~S~Sm~--------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~ 59 (224)
T cd01475 3 TDLVFLIDSSRSVR--------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLG 59 (224)
T ss_pred ccEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccc
Confidence 56777888765521 2346777777777777764 34 899999998743 246665
Q ss_pred CCCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHH----Hc-CC--c-eEEEEEEeCCccCCccHHHHHHH
Q 018644 125 ENDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVE----ES-GG--L-HHVLVIITSGQVATGSQQEQETI 195 (352)
Q Consensus 125 ~~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~----~~-~~--~-Y~VLlIitDG~i~d~~~~~~~~i 195 (352)
.. ...+++.++-. +++ +.|-|+-.--|+.+.+.+- .. .. . =.|+|+||||.-.|-..+..+.+
T Consensus 60 ~~----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~l 131 (224)
T cd01475 60 RF----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKA 131 (224)
T ss_pred cc----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHHH
Confidence 31 23345544433 233 3456776666666665421 11 11 1 36889999998766222222223
Q ss_pred hcCCcEEEEEeecCCCcchhccccC
Q 018644 196 SSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 196 S~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
-+.-+.|..||||+.+...|+++=.
T Consensus 132 k~~gv~i~~VgvG~~~~~~L~~ias 156 (224)
T cd01475 132 RALGIEMFAVGVGRADEEELREIAS 156 (224)
T ss_pred HHCCcEEEEEeCCcCCHHHHHHHhC
Confidence 5567899999999987766666644
No 72
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00074 Score=68.17 Aligned_cols=45 Identities=31% Similarity=0.930 Sum_probs=38.9
Q ss_pred cccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
+..+.+|.||+...-.++. ||||.+|..|+.+. ..||.||.++..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3678999999998888776 99999999997765 679999998875
No 73
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=96.61 E-value=0.026 Score=54.35 Aligned_cols=136 Identities=18% Similarity=0.278 Sum_probs=88.1
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+.++++|||=|.|=.. . .-.++..+ |+..|.+.+..-..+.+-+.+||.... .+.+|+.
T Consensus 59 r~~qIvlaID~S~SM~~-------------~--~~~~~ale-ak~lIs~al~~Le~g~vgVv~Fg~~~~---~v~Plt~- 118 (266)
T cd01460 59 RDYQILIAIDDSKSMSE-------------N--NSKKLALE-SLCLVSKALTLLEVGQLGVCSFGEDVQ---ILHPFDE- 118 (266)
T ss_pred cCceEEEEEecchhccc-------------c--cccccHHH-HHHHHHHHHHhCcCCcEEEEEeCCCce---EeCCCCC-
Confidence 35789999999877321 1 12356665 899999999988888999999999631 2334432
Q ss_pred CCCCCCHHHHHHHHHhhCCceeee-cCCCcHHHHHHHHHHHHHcC----C--ceEEEEEEeCCccCCccHHHHHH-H---
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYF-GPTSYAPMVEAAVDIVEESG----G--LHHVLVIITSGQVATGSQQEQET-I--- 195 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~-gPt~fapiI~~a~~~a~~~~----~--~Y~VLlIitDG~i~d~~~~~~~~-i--- 195 (352)
+. .. ++.-+++....+. +-|+.+..|..+++..++.. . .-.++||||||.-.+ .+..... +
T Consensus 119 -d~----~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~-~e~~~~~~~r~a 190 (266)
T cd01460 119 -QF----SS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEF-SEGAQKVRLREA 190 (266)
T ss_pred -Cc----hh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCccc-CccHHHHHHHHH
Confidence 11 11 2223333433343 45899999999998866431 1 137999999999433 2223322 3
Q ss_pred hcCCcEEEEEeecCC
Q 018644 196 SSYPLSIVLVGVGDG 210 (352)
Q Consensus 196 S~~PlSIiiVGVG~~ 210 (352)
.+-.+.+++|||=+.
T Consensus 191 ~e~~i~l~~I~ld~~ 205 (266)
T cd01460 191 REQNVFVVFIIIDNP 205 (266)
T ss_pred HHcCCeEEEEEEcCC
Confidence 666899999999765
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.56 E-value=0.0011 Score=48.61 Aligned_cols=43 Identities=30% Similarity=0.737 Sum_probs=34.2
Q ss_pred cCCcccCcccCCCCee-ecCCCCCchhhhh--cCCCCCCCccccCC
Q 018644 304 EAQRCCICCEDEKDTA-FECGHMSCIKCAL--RMPQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-~pCGH~~C~~C~~--~~~~CP~CR~~i~~ 346 (352)
....|..|......-+ +||||.+|..|-. +...||+|-.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 4567888888755544 4999999999976 45789999999875
No 75
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=96.50 E-value=0.04 Score=48.97 Aligned_cols=123 Identities=13% Similarity=0.167 Sum_probs=74.1
Q ss_pred hHHHHHHHHhcccc-ccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHH
Q 018644 85 PYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAA 162 (352)
Q Consensus 85 ~Yq~ai~~ig~vl~-~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a 162 (352)
..+.|..++..++. .+..+ .+-++.|...... ..+++. .+.+.+. +.+..+...|-|++..-++.+
T Consensus 18 rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~t------~~~~~~~----~~l~~l~~~G~T~l~~aL~~a 85 (178)
T cd01451 18 RMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPPT------RSVELAK----RRLARLPTGGGTPLAAGLLAA 85 (178)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCCC------CCHHHHH----HHHHhCCCCCCCcHHHHHHHH
Confidence 45666666666554 34445 8999999764211 122222 2344443 344556778999999999999
Q ss_pred HHHHH-Hc--CCceEEEEEEeCCccCCc---cHHH-HHHH---hcCCcEEEEEeecCCC--cchhcccc
Q 018644 163 VDIVE-ES--GGLHHVLVIITSGQVATG---SQQE-QETI---SSYPLSIVLVGVGDGP--WESIQKFH 219 (352)
Q Consensus 163 ~~~a~-~~--~~~Y~VLlIitDG~i~d~---~~~~-~~~i---S~~PlSIiiVGVG~~~--f~~m~~LD 219 (352)
.+..+ +. ...-.++++||||.-+.. .... .+.. ....+.|+.||+|..+ -+.|++|=
T Consensus 86 ~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 86 YELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHH
Confidence 98872 21 122368899999986621 1112 2222 5667888889998753 33455553
No 76
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00097 Score=70.06 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=36.5
Q ss_pred ccccCCcccCcccCCCC-----eee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018644 301 EVAEAQRCCICCEDEKD-----TAF-ECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~-----~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
.......|.||.|.... +.. +|||.||..|...+ ..||+||..+.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 33457899999997666 444 99999999999987 78999999443
No 77
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=96.32 E-value=0.052 Score=49.57 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=92.2
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCC---------C-ccceeeecCCCCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG---------D-CIRCYGFGDDTTRD 117 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~---------d-~ip~~GFGa~~~~~ 117 (352)
.+.+.+.||-+.|=+ .+.++++..-+..++..++. . ++-+.-|+....
T Consensus 19 ~~DivfvlD~S~Sm~--------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~-- 76 (193)
T cd01477 19 WLDIVFVVDNSKGMT--------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT-- 76 (193)
T ss_pred eeeEEEEEeCCCCcc--------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE--
Confidence 367788888776632 13466776666665555553 2 888888887532
Q ss_pred CCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc-----CCceEEEEEEeCCccCCc---cH
Q 018644 118 EGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATG---SQ 189 (352)
Q Consensus 118 ~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~-----~~~Y~VLlIitDG~i~d~---~~ 189 (352)
..|+|+ .....++++++.+..++.+..+|-|+...-|+.|.+....+ ...=.|+++||||.-++- ..
T Consensus 77 -~~~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~ 151 (193)
T cd01477 77 -VVADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPR 151 (193)
T ss_pred -EEEecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHH
Confidence 236664 22456788888887666666667899999999988876532 122467899999743320 12
Q ss_pred HHHHHHhcCCcEEEEEeecCC-Ccchhcccc
Q 018644 190 QEQETISSYPLSIVLVGVGDG-PWESIQKFH 219 (352)
Q Consensus 190 ~~~~~iS~~PlSIiiVGVG~~-~f~~m~~LD 219 (352)
+..+.+.+..+.|..||||++ +=..|++|.
T Consensus 152 ~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~ 182 (193)
T cd01477 152 PIAARLKSTGIAIITVAFTQDESSNLLDKLG 182 (193)
T ss_pred HHHHHHHHCCCEEEEEEeCCCCCHHHHHHHH
Confidence 222223677999999999974 222355544
No 78
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.32 E-value=0.056 Score=47.86 Aligned_cols=126 Identities=14% Similarity=0.232 Sum_probs=79.6
Q ss_pred chHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceee-ec-CCCcHH
Q 018644 84 NPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQY-FG-PTSYAP 157 (352)
Q Consensus 84 N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l-~g-Pt~fap 157 (352)
..++++..-+.+++..|+ .. .+.+.-|+.... ..|+|+.- ...++++++-.+ ++. .| .|+-..
T Consensus 16 ~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~----~~~~~l~~~i~~----i~~~~g~~t~t~~ 84 (165)
T cd01481 16 GNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH----STKADVLGAVRR----LRLRGGSQLNTGS 84 (165)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc----CCHHHHHHHHHh----cccCCCCcccHHH
Confidence 567777777777777776 44 899999987642 23666421 245566665443 444 35 478888
Q ss_pred HHHHHHHHHHH--cC-----CceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecCCCcchhccccC
Q 018644 158 MVEAAVDIVEE--SG-----GLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 158 iI~~a~~~a~~--~~-----~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
-|+.+.+..-. .+ +-=.||++||||.-+|...+.-+.+-+.-+-|+.||+|..+.+.|+.+-+
T Consensus 85 AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 85 ALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhC
Confidence 88887665321 11 12368899999998773222222335566788888888777777766654
No 79
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=96.29 E-value=0.046 Score=48.65 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=76.8
Q ss_pred chHHHHHHHHhccccccCC---C-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHH
Q 018644 84 NPYQEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMV 159 (352)
Q Consensus 84 N~Yq~ai~~ig~vl~~yd~---d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI 159 (352)
..++++...+..++..++. . .+-+..|+.... ..|+|+. -...+.++++=+. ++ .+.|.|+...-|
T Consensus 16 ~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~----~~~~~~~~~~i~~-~~--~~~g~T~~~~AL 85 (177)
T cd01469 16 DDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE----YRTKEEPLSLVKH-IS--QLLGLTNTATAI 85 (177)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc----cCCHHHHHHHHHh-Cc--cCCCCccHHHHH
Confidence 4577777777778777775 4 899999998642 2356541 1234455544332 22 256789999999
Q ss_pred HHHHHHH--HHc---CCceEEEEEEeCCccCCccHHHHHHH---hcCCcEEEEEeecCC
Q 018644 160 EAAVDIV--EES---GGLHHVLVIITSGQVATGSQQEQETI---SSYPLSIVLVGVGDG 210 (352)
Q Consensus 160 ~~a~~~a--~~~---~~~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlSIiiVGVG~~ 210 (352)
+.|.+.. ... ...=.|+|+||||.-+| .....+++ -..-+-|..||||+.
T Consensus 86 ~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~-~~~~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 86 QYVVTELFSESNGARKDATKVLVVITDGESHD-DPLLKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred HHHHHHhcCcccCCCCCCCeEEEEEeCCCCCC-ccccHHHHHHHHHCCcEEEEEEeccc
Confidence 9988764 111 12346888899999887 34333444 456889999999985
No 80
>PRK13685 hypothetical protein; Provisional
Probab=96.29 E-value=0.047 Score=53.63 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=84.7
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
.+++++||-|.|=.. . +..+|..+.|-.++..++.....+ .+-++.|++...- +.+++
T Consensus 89 ~~vvlvlD~S~SM~~-------------~--D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t--- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRA-------------T--DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT--- 147 (326)
T ss_pred ceEEEEEECCccccC-------------C--CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC---
Confidence 568899998877421 1 123578888888888899988666 9999999986421 22322
Q ss_pred CCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHH--------cCCceEEEEEEeCCccCCcc-----H---HH
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--------SGGLHHVLVIITSGQVATGS-----Q---QE 191 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~--------~~~~Y~VLlIitDG~i~d~~-----~---~~ 191 (352)
...+.+ ...+..++..+=|+...-|..+.+..++ +...--++|+||||.-+.-. . +.
T Consensus 148 ---~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~a 220 (326)
T PRK13685 148 ---TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTA 220 (326)
T ss_pred ---CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHH
Confidence 222333 3334455566778888888888877652 11123456899999754310 1 11
Q ss_pred HHHHhcCCcEEEEEeecCC
Q 018644 192 QETISSYPLSIVLVGVGDG 210 (352)
Q Consensus 192 ~~~iS~~PlSIiiVGVG~~ 210 (352)
.+...+..+.|-+||||..
T Consensus 221 a~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 221 ARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHcCCeEEEEEECCC
Confidence 1222567888889999963
No 81
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.04 E-value=0.021 Score=48.65 Aligned_cols=121 Identities=16% Similarity=0.258 Sum_probs=76.1
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCCCCCC
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQENDSPC 130 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~~p~~ 130 (352)
+.||||-|+|=. .....+++..|..+++.+.. .+-++=|-+++......
T Consensus 1 i~vaiDtSGSis--------------------~~~l~~fl~ev~~i~~~~~~-~v~vi~~D~~v~~~~~~---------- 49 (126)
T PF09967_consen 1 IVVAIDTSGSIS--------------------DEELRRFLSEVAGILRRFPA-EVHVIQFDAEVQDVQVF---------- 49 (126)
T ss_pred CEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhCCC-CEEEEEECCEeeeeeEE----------
Confidence 468999887731 24677888888889999833 56667676654432211
Q ss_pred CCHHHHHHHHHhhCCceeee--cCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEe--
Q 018644 131 QGFEHVLECYRKNVPNVQYF--GPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVG-- 206 (352)
Q Consensus 131 ~G~~gvl~~Y~~~l~~v~l~--gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVG-- 206 (352)
.. ....+.++++. |-|+|.|+++++.+. ..+..++++||||..... + .+ -.+|+=|++.|
T Consensus 50 ~~-------~~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-~--~~--P~~~vlWvl~~~~ 113 (126)
T PF09967_consen 50 RS-------LEDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-E--EA--PPYPVLWVLPGNR 113 (126)
T ss_pred ec-------ccccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-C--CC--CCCcEEEEEeCCC
Confidence 11 12223334443 689999999998654 335677889999988542 0 11 26888899988
Q ss_pred ecCCCcchhccc
Q 018644 207 VGDGPWESIQKF 218 (352)
Q Consensus 207 VG~~~f~~m~~L 218 (352)
-...+|+..-+|
T Consensus 114 ~~~~P~G~vv~l 125 (126)
T PF09967_consen 114 NPKAPFGRVVRL 125 (126)
T ss_pred CCCCCCEEEEEe
Confidence 223456554443
No 82
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.03 E-value=0.0034 Score=63.52 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=36.0
Q ss_pred cccccCCcccCcccCCCC---eee--cCCCCCchhhhhcC--CCCCCCccccC
Q 018644 300 AEVAEAQRCCICCEDEKD---TAF--ECGHMSCIKCALRM--PQCPFCREEIT 345 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~---~~~--pCGH~~C~~C~~~~--~~CP~CR~~i~ 345 (352)
..+.+.++|+||+++--. .++ .|-|.|=..|+.++ ..||+||---.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 345788999999996444 234 99999988899998 57999996443
No 83
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0034 Score=62.33 Aligned_cols=46 Identities=33% Similarity=0.843 Sum_probs=38.3
Q ss_pred ccCCcccCcccCCCCee-----e----cCCCCCchhhhhcC-----------CCCCCCccccCCee
Q 018644 303 AEAQRCCICCEDEKDTA-----F----ECGHMSCIKCALRM-----------PQCPFCREEITTRR 348 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~-----~----pCGH~~C~~C~~~~-----------~~CP~CR~~i~~~i 348 (352)
..+.+|.||++.-.+.. | +|-|.+|..|+.++ +.||.||.+...++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 46789999999877766 4 79999999999876 46999999877653
No 84
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0041 Score=61.67 Aligned_cols=42 Identities=31% Similarity=0.750 Sum_probs=33.7
Q ss_pred CcccCcccCCCC---e-eecCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018644 306 QRCCICCEDEKD---T-AFECGHMSCIKCALRM-----PQCPFCREEITTR 347 (352)
Q Consensus 306 ~~C~IC~~~~~~---~-~~pCGH~~C~~C~~~~-----~~CP~CR~~i~~~ 347 (352)
..|.||+|..+. . ++||.|.|=..|+..+ ..||+|++.+.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 599999997665 2 2399999988999887 3499999988664
No 85
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=95.77 E-value=0.095 Score=47.89 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=94.7
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc-CC--C-ccceeeecCCCCCCCCcccCCCC
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF-DG--D-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y-d~--d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+|+||.+.|-.. . +..+|.++.+...+..++..| +. . ++-+..|+++.... ..+++.
T Consensus 6 ~vi~lD~S~sM~a-------------~--D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~- 67 (187)
T cd01452 6 TMICIDNSEYMRN-------------G--DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN- 67 (187)
T ss_pred EEEEEECCHHHHc-------------C--CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC-
Confidence 4689999877431 1 235799999999998887333 32 2 78888898843321 122222
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC---CceEEEEEEeCCccCCccHHHHHHH---hcCCc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETI---SSYPL 200 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~---~~Y~VLlIitDG~i~d~~~~~~~~i---S~~Pl 200 (352)
..+.++. .+..+.+.|.+++..-|+.|...-+... ..=-|+++++++.-.| ..+..+++ .+-.+
T Consensus 68 -----D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d-~~~i~~~~~~lkk~~I 137 (187)
T cd01452 68 -----DQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED-EKDLVKLAKRLKKNNV 137 (187)
T ss_pred -----CHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC-HHHHHHHHHHHHHcCC
Confidence 2334433 3445667799999999998877665331 2225566666664445 24554555 66678
Q ss_pred EEEEEeecCC--CcchhccccCCCCCcceeeEeeecchh
Q 018644 201 SIVLVGVGDG--PWESIQKFHDKIPALQFDNFHFVNFTA 237 (352)
Q Consensus 201 SIiiVGVG~~--~f~~m~~LD~~~~~r~rDnvqFV~f~~ 237 (352)
.|-+||+|+. +=+.++.|-+... .-|+-+||....
T Consensus 138 ~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~~ 174 (187)
T cd01452 138 SVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVPP 174 (187)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeCC
Confidence 8888888865 3444444433222 236677776544
No 86
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.67 E-value=0.11 Score=55.28 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=78.2
Q ss_pred chHHHHHHHHhccccc-cCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHH
Q 018644 84 NPYQEVIYITGKELVL-FDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEA 161 (352)
Q Consensus 84 N~Yq~ai~~ig~vl~~-yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~ 161 (352)
+..+.|-.++..++.. |... .+-++.|+..... .++++ -.+.+.+ ++.+..+...|.|.++.-|..
T Consensus 423 ~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~------t~~~~~~----~~~L~~l~~gGgTpL~~gL~~ 490 (589)
T TIGR02031 423 ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP------SRSVEQA----KRRLDVLPGGGGTPLAAGLAA 490 (589)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC------CCCHHHH----HHHHhcCCCCCCCcHHHHHHH
Confidence 3466666666666653 5444 8999999754211 12322 1344444 355778888999999999999
Q ss_pred HHHHHHHcC--CceEEEEEEeCCccCCccH-----------HHHHH-------HhcCCcEEEEEeecCCCc--chhcccc
Q 018644 162 AVDIVEESG--GLHHVLVIITSGQVATGSQ-----------QEQET-------ISSYPLSIVLVGVGDGPW--ESIQKFH 219 (352)
Q Consensus 162 a~~~a~~~~--~~Y~VLlIitDG~i~d~~~-----------~~~~~-------iS~~PlSIiiVGVG~~~f--~~m~~LD 219 (352)
+.+..++.. ..-.++|+||||.-+--+. ...+. +.+..+.+++||+|.+.. +.+++|=
T Consensus 491 A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA 570 (589)
T TIGR02031 491 AFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLA 570 (589)
T ss_pred HHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHH
Confidence 999876532 2235779999997541000 11111 156779999999997643 3366654
No 87
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.66 E-value=0.13 Score=54.84 Aligned_cols=143 Identities=14% Similarity=0.193 Sum_probs=92.1
Q ss_pred CceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccc-ccCCC-ccceeeecCCCCCCCCcccC
Q 018644 46 KVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 46 l~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~-~yd~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.....+++.||.|.|-. .+....|-.++-.+|. .|-.. .+-++.|++... ..+++.
T Consensus 399 ~~~~~vvfvvD~SGSM~--------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lpp 456 (584)
T PRK13406 399 RSETTTIFVVDASGSAA--------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLPP 456 (584)
T ss_pred cCCccEEEEEECCCCCc--------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcCC
Confidence 34577888888887731 1345555556666563 47666 999999965421 112222
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc--CCceEEEEEEeCCccCCcc----------HHH
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGS----------QQE 191 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIitDG~i~d~~----------~~~ 191 (352)
+ ..++.+ ++.+..+.-.|-|.++.-|..|.+.+++. .+.-.++|+||||.-+.-. .+.
T Consensus 457 T------~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~ 526 (584)
T PRK13406 457 T------RSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDA 526 (584)
T ss_pred C------cCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHH
Confidence 1 244444 45556777889999999999999887654 2235788999999865311 111
Q ss_pred HHHH---hcCCcEEEEEeecCCCcchhccccC
Q 018644 192 QETI---SSYPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 192 ~~~i---S~~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
.++. ...-+.+++|+.|....+.|++|=+
T Consensus 527 ~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA~ 558 (584)
T PRK13406 527 LAAARALRAAGLPALVIDTSPRPQPQARALAE 558 (584)
T ss_pred HHHHHHHHhcCCeEEEEecCCCCcHHHHHHHH
Confidence 1111 5567889999999888777777754
No 88
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=95.64 E-value=0.17 Score=46.61 Aligned_cols=149 Identities=13% Similarity=0.209 Sum_probs=89.2
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc---cCCC-ccceeeecCCCCCC----CCccc
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRD----EGVFS 122 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~---yd~d-~ip~~GFGa~~~~~----~~~f~ 122 (352)
++++||.+.|=. .-.+...+++.+.|+..+..+++. .... .+-++.||...+.. .+++.
T Consensus 4 ivf~iDvS~SM~-------------~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v 70 (218)
T cd01458 4 VVFLVDVSPSMF-------------ESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYV 70 (218)
T ss_pred EEEEEeCCHHHc-------------CCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEE
Confidence 578999986632 000112368999999999999997 5555 99999999975432 34444
Q ss_pred CCCCCCCCCCHHHHHHHHHhhCCcee--------eecCCCcHHHHHHHHHHHHHc--CCceEEEEEEeCCccC---C-cc
Q 018644 123 FQENDSPCQGFEHVLECYRKNVPNVQ--------YFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVA---T-GS 188 (352)
Q Consensus 123 ~~~~~p~~~G~~gvl~~Y~~~l~~v~--------l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIitDG~i~---d-~~ 188 (352)
+.|-+ .-.. ..++...+.+..-. -++.|.+...|..+.++-++. ...=-.+++||||.=. | ..
T Consensus 71 ~~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~ 147 (218)
T cd01458 71 LLDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIK 147 (218)
T ss_pred eecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHH
Confidence 43211 1122 23333343332221 245789999999998887652 1112466889999543 1 01
Q ss_pred -HHHHHHH---hcCCcEEEEEeecCCC--cchh
Q 018644 189 -QQEQETI---SSYPLSIVLVGVGDGP--WESI 215 (352)
Q Consensus 189 -~~~~~~i---S~~PlSIiiVGVG~~~--f~~m 215 (352)
.+..+.+ .+.-+.|..||+|..+ |+..
T Consensus 148 ~~~~~~~a~~l~~~gI~i~~i~i~~~~~~f~~~ 180 (218)
T cd01458 148 DSQAAVKAEDLKDKGIELELFPLSSPGKKFDVS 180 (218)
T ss_pred HHHHHHHHHHHHhCCcEEEEEecCCCCCCCChh
Confidence 1222222 6668999999998654 5433
No 89
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0055 Score=59.10 Aligned_cols=43 Identities=28% Similarity=0.643 Sum_probs=37.4
Q ss_pred CcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018644 306 QRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTRR 348 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~i 348 (352)
..|-||.....++|. .|||.||..|+.+. ..|++|-+.+.+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 469999999999888 99999999999876 57999999877653
No 90
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.26 E-value=0.0048 Score=56.44 Aligned_cols=43 Identities=35% Similarity=0.758 Sum_probs=35.9
Q ss_pred CCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
...|.||..-...++. .|||.||..|+-+- ..|-+|-..-...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 4789999998888887 99999999998754 6799998765554
No 91
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=95.19 E-value=0.23 Score=45.54 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=80.2
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDS 128 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p 128 (352)
.+++|+|.|+|=.. ++ . . ++ ..-.-..|.+.+.+.+..|... ...-.||++...... ...+ +.|
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~-dg-~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~-~lt~--d~p 66 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-Y-DG-RLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVP-FVKT--NHP 66 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-c-CC-ccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccC-cccc--ccC
Confidence 47899999998421 10 0 1 12 2223344455555545555455 666777766432111 1111 122
Q ss_pred CCCCHH--HHHHHHHhhCCceeeecCCCcHHHHHHHHHHHH-HcCCceEEEEEEeCCccCCc-cHHHH--HHH-hcCCcE
Q 018644 129 PCQGFE--HVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVE-ESGGLHHVLVIITSGQVATG-SQQEQ--ETI-SSYPLS 201 (352)
Q Consensus 129 ~~~G~~--gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~-~~~~~Y~VLlIitDG~i~d~-~~~~~--~~i-S~~PlS 201 (352)
.-..-+ .++...-.- -++-+.|+..- .-|..+++..+ ++..+=.|+++||||.-+.- ..-.+ +.+ .+.-+=
T Consensus 67 ~t~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~ 144 (191)
T cd01455 67 PKNNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVN 144 (191)
T ss_pred cccchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCE
Confidence 222222 233222221 23456676433 77777777766 55333457799999985432 12222 234 778888
Q ss_pred EEEEeecCCCcchhccc
Q 018644 202 IVLVGVGDGPWESIQKF 218 (352)
Q Consensus 202 IiiVGVG~~~f~~m~~L 218 (352)
|-.||||..+.+.++.+
T Consensus 145 iytIgiG~~d~~~l~~i 161 (191)
T cd01455 145 AFVIFIGSLSDEADQLQ 161 (191)
T ss_pred EEEEEecCCCHHHHHHH
Confidence 99999998655555444
No 92
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.18 E-value=0.012 Score=47.08 Aligned_cols=39 Identities=31% Similarity=0.710 Sum_probs=28.0
Q ss_pred cccCcccCCCC--eee-cCCCCCchhhhhcC-------CCCCCCccccC
Q 018644 307 RCCICCEDEKD--TAF-ECGHMSCIKCALRM-------PQCPFCREEIT 345 (352)
Q Consensus 307 ~C~IC~~~~~~--~~~-pCGH~~C~~C~~~~-------~~CP~CR~~i~ 345 (352)
.|+.|.-.-.+ .++ .|+|.|=..|+.+. ..||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 44555443333 345 99999999999876 46999999864
No 93
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.10 E-value=0.0081 Score=42.97 Aligned_cols=37 Identities=41% Similarity=0.911 Sum_probs=18.3
Q ss_pred ccCcccCC--CCeee---cCCCCCchhhhhcC-----CCCCCCcccc
Q 018644 308 CCICCEDE--KDTAF---ECGHMSCIKCALRM-----PQCPFCREEI 344 (352)
Q Consensus 308 C~IC~~~~--~~~~~---pCGH~~C~~C~~~~-----~~CP~CR~~i 344 (352)
|++|.+.. ++..| +||+.+|+.|..++ ..||.||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 77888754 33334 88999999997765 4699999873
No 94
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=95.00 E-value=0.21 Score=48.00 Aligned_cols=133 Identities=13% Similarity=0.066 Sum_probs=74.3
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc-cCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL-FDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~-yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++.+.+|.|.|=. +..+.+..++..++.. +..+ .+-++.|+..... .++++
T Consensus 53 p~~vvlvlD~SgSM~---------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 53 PLTVGLVIDTSGSMR---------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CceEEEEEECCCCch---------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 467788888776631 1234455555555554 4456 9999999986432 22332
Q ss_pred CCCCCCCHHHHHHHHHhhCC-----------ceeeecCCCcHHHHHHHH-HHHHHcC---CceEEEEEEeCCccCCccHH
Q 018644 126 NDSPCQGFEHVLECYRKNVP-----------NVQYFGPTSYAPMVEAAV-DIVEESG---GLHHVLVIITSGQVATGSQQ 190 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~-----------~v~l~gPt~fapiI~~a~-~~a~~~~---~~Y~VLlIitDG~i~d~~~~ 190 (352)
...+.+.++-.+.-+ .+...|.|++..-|..++ +...+.. ..=-++|+||||.-+.....
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~ 182 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDT 182 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHH
Confidence 123444444333222 123367788777766554 3333221 01257899999976552223
Q ss_pred HHHHH---hcCCcEEEEEeecCC
Q 018644 191 EQETI---SSYPLSIVLVGVGDG 210 (352)
Q Consensus 191 ~~~~i---S~~PlSIiiVGVG~~ 210 (352)
..+++ .+.-+.|..||+|+.
T Consensus 183 ~~~~~~~~~~~~v~vy~I~~~~~ 205 (296)
T TIGR03436 183 LERAIDAAQRADVAIYSIDARGL 205 (296)
T ss_pred HHHHHHHHHHcCCEEEEeccCcc
Confidence 33444 456788888888853
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.93 E-value=0.0042 Score=66.49 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=36.6
Q ss_pred ccCCcccCcccCCCCeee----cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018644 303 AEAQRCCICCEDEKDTAF----ECGHMSCIKCALRM----PQCPFCREEITTRR 348 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~----pCGH~~C~~C~~~~----~~CP~CR~~i~~~i 348 (352)
.....|++|+....+-+. +|+|.||..|+..+ ..||+||..+..++
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 345778899877666332 99999999999877 57999999988764
No 96
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.76 E-value=0.017 Score=58.43 Aligned_cols=46 Identities=37% Similarity=0.816 Sum_probs=40.4
Q ss_pred cccCCcccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.+++..|++|.....+++. .|||.||..|.... ..||.||..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 5678999999999999887 99999999999977 5799999887654
No 97
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.031 Score=52.82 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=36.7
Q ss_pred cCCcccCcccCCCC----eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 304 EAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 304 ~~~~C~IC~~~~~~----~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
....|+||.+...+ +++ ||||.+|.+|..++ ..||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 56899999986665 346 99999999999998 4599999988764
No 98
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.80 E-value=0.023 Score=61.32 Aligned_cols=40 Identities=33% Similarity=0.978 Sum_probs=33.6
Q ss_pred CcccCcccCCCCeee-cCCCCCchhhhhcC------CCCCCCccccCC
Q 018644 306 QRCCICCEDEKDTAF-ECGHMSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
..|.+|.+ ...+++ +|||.+|.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 555666 99999999999876 469999987654
No 99
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.79 E-value=0.6 Score=50.19 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=80.9
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccc-ccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELV-LFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~-~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
...+++.||.|+|=. . .+..+.|..++..++. .|-.. .+-+++|++... ..+++++
T Consensus 465 ~~~vv~vvD~SgSM~-------------~------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~t- 522 (633)
T TIGR02442 465 GNLVIFVVDASGSMA-------------A------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPPT- 522 (633)
T ss_pred CceEEEEEECCccCC-------------C------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCCC-
Confidence 356778888887732 0 2455666666666654 45555 999999975411 1123322
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHH----cCCceEEEEEEeCCccCCc---cHHHHHH----
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE----SGGLHHVLVIITSGQVATG---SQQEQET---- 194 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~----~~~~Y~VLlIitDG~i~d~---~~~~~~~---- 194 (352)
.+.+.+. +.+..+...|-|.++.-|..+.+..++ ....=.++++||||.-+.. .+...++
T Consensus 523 -----~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a 593 (633)
T TIGR02442 523 -----SSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIA 593 (633)
T ss_pred -----CCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHH
Confidence 3444442 345567778999999999999988773 2223467789999976430 1111222
Q ss_pred --HhcCCcEEEEEeecCC
Q 018644 195 --ISSYPLSIVLVGVGDG 210 (352)
Q Consensus 195 --iS~~PlSIiiVGVG~~ 210 (352)
+.+..+-+++|+.+++
T Consensus 594 ~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 594 AKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHhcCCeEEEEeCCCC
Confidence 1455677888887664
No 100
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.30 E-value=0.054 Score=51.77 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=37.4
Q ss_pred cccCCcccCcccCCCC----eee-cCCCCCchhhhhcCC---CCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKD----TAF-ECGHMSCIKCALRMP---QCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~----~~~-pCGH~~C~~C~~~~~---~CP~CR~~i~~~ 347 (352)
......|||....... +++ ||||.++..++..+. .||+|-+++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccC
Confidence 3567899999975532 455 999999999999986 799999998763
No 101
>PRK10997 yieM hypothetical protein; Provisional
Probab=93.06 E-value=1.7 Score=45.35 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=86.0
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHH-HHHHhccccccCCCccceeeecCCCCCCCCcccCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEV-IYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~a-i~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
..-.++|.||-|+|=. |. +..|.+| .-+++.+...=.+ .+-++.|+...... .+.
T Consensus 322 ~kGpiII~VDtSGSM~--G~----------------ke~~AkalAaAL~~iAl~q~d-r~~li~Fs~~i~~~----~l~- 377 (487)
T PRK10997 322 PRGPFIVCVDTSGSMG--GF----------------NEQCAKAFCLALMRIALAENR-RCYIMLFSTEVVTY----ELT- 377 (487)
T ss_pred CCCcEEEEEECCCCCC--CC----------------HHHHHHHHHHHHHHHHHhcCC-CEEEEEecCCceee----ccC-
Confidence 3467999999998732 11 2356666 3444554444333 45678898864321 222
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH----hcCCcE
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI----SSYPLS 201 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i----S~~PlS 201 (352)
.-.|+..+++.-.. .+.|.|++++.++++.+..++..-+=-.+|||||+......++..+.| .+.-..
T Consensus 378 ---~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~r 449 (487)
T PRK10997 378 ---GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHR 449 (487)
T ss_pred ---CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcE
Confidence 22578777765543 258999999999999998875422335689999996543223344444 324455
Q ss_pred EEEEeecC-CCcchhccccC
Q 018644 202 IVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 202 IiiVGVG~-~~f~~m~~LD~ 220 (352)
+.-|=||+ ++=+.|+.+|.
T Consensus 450 f~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 450 FHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred EEEEEeCCCCCchHHHhcCe
Confidence 55555565 33355666664
No 102
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=92.88 E-value=0.027 Score=58.31 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=38.1
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC---------CCCCCCccccC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM---------PQCPFCREEIT 345 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~---------~~CP~CR~~i~ 345 (352)
.+-++..+|.+|.+...+.+. .|.|.||+.|+... -.||.|-...+
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 344667899999999999887 99999999999643 57999987654
No 103
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=92.58 E-value=1.2 Score=49.49 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=82.5
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-hccccccCCC-ccceeeecCCCCCCCCcccCCCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYIT-GKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEND 127 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~i-g~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~ 127 (352)
.+.+.||-|.|=. |. ...+.-++|++.. ..++ ..+ .+-++.|+...... .+|.+-.
T Consensus 306 ~VVLVLDvSGSM~--g~--------------dRL~~lkqAA~~fL~~~l---~~~DrVGLVtFsssA~vl---~pLt~It 363 (863)
T TIGR00868 306 IVCLVLDKSGSMT--VE--------------DRLKRMNQAAKLFLLQTV---EKGSWVGMVTFDSAAYIK---NELIQIT 363 (863)
T ss_pred eEEEEEECCcccc--cc--------------CHHHHHHHHHHHHHHHhC---CCCCEEEEEEECCceeEe---eccccCC
Confidence 3667788877732 11 1234455565543 2333 345 99999999864321 2232211
Q ss_pred CCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCC--ceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEE
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQVATGSQQEQETISSYPLSIVLV 205 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~--~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiV 205 (352)
. +...++-...++ ....|-|++..-|+.|.+..++... .=-.+++||||.-++ ..+..+.+.+..+.|-.|
T Consensus 364 ----s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~-~~~~l~~lk~~gVtI~TI 436 (863)
T TIGR00868 364 ----S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT-ISSCFEEVKQSGAIIHTI 436 (863)
T ss_pred ----c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC-HHHHHHHHHHcCCEEEEE
Confidence 1 122333333444 3467889999999999988775421 123567889998766 344444445568889999
Q ss_pred eecCCCcchhcccc
Q 018644 206 GVGDGPWESIQKFH 219 (352)
Q Consensus 206 GVG~~~f~~m~~LD 219 (352)
|+|...=..|++|=
T Consensus 437 g~G~dad~~L~~IA 450 (863)
T TIGR00868 437 ALGPSAAKELEELS 450 (863)
T ss_pred EeCCChHHHHHHHH
Confidence 99976544454443
No 104
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.43 E-value=0.027 Score=55.22 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=41.8
Q ss_pred cccccCCcccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018644 300 AEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTRR 348 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~----~~CP~CR~~i~~~i 348 (352)
.++....+|.+|-....|+.. -|=|.||+.|+-+. ..||.|...|.+..
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 345667899999999999765 99999999999876 68999999887764
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.22 E-value=0.051 Score=53.51 Aligned_cols=43 Identities=33% Similarity=0.764 Sum_probs=31.3
Q ss_pred cCCcccCcccCC--CCeee---cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 304 EAQRCCICCEDE--KDTAF---ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~--~~~~~---pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
++..|+.|++.- .|--| |||-.+|+.|...+ ..||.||..-+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 344599999852 22224 78888999998876 579999986554
No 106
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=91.36 E-value=0.073 Score=39.36 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=26.0
Q ss_pred ccCCcccCcccCCCCeee--cCCCCCchhhhhcC------CCCCC
Q 018644 303 AEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPF 339 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~------~~CP~ 339 (352)
.-...|||.+....+++. .|||.|.++.+..+ ..||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 456899999999999987 99999999999876 35998
No 107
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.065 Score=55.09 Aligned_cols=45 Identities=27% Similarity=0.687 Sum_probs=33.6
Q ss_pred cccCCcccCcccC-----------------CCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 302 VAEAQRCCICCED-----------------EKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~-----------------~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
......|+||+.. .++-.+ ||-|.+=+.|+.++ -.||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456889999962 112234 99999999999987 269999998753
No 108
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.074 Score=53.62 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=25.6
Q ss_pred cCCcccCcccCCCC---eee-cCCCCCchhhhhcC
Q 018644 304 EAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM 334 (352)
Q Consensus 304 ~~~~C~IC~~~~~~---~~~-pCGH~~C~~C~~~~ 334 (352)
....|.||++...- ..+ ||+|.+|..|+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 45899999998776 345 99999999999853
No 109
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=90.60 E-value=1.8 Score=40.15 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=50.2
Q ss_pred ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCC-
Q 018644 104 CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSG- 182 (352)
Q Consensus 104 ~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG- 182 (352)
.+-+|-|+.........+. . .+..+.+..-...... ++|-|++...++++.+......-.-.++||||||
T Consensus 90 ~~~~f~F~~~l~~vT~~l~--~-----~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 90 RVRVFVFSTRLTEVTPLLR--R-----RDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CEEEEEEeeehhhhhhhhc--c-----CCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 4777889876543222221 1 1334444444333333 8999999999999998876432256888999999
Q ss_pred ccCCccHHHHHHH
Q 018644 183 QVATGSQQEQETI 195 (352)
Q Consensus 183 ~i~d~~~~~~~~i 195 (352)
+-.+ .+...+.+
T Consensus 161 ~~~~-~~~~~~~l 172 (222)
T PF05762_consen 161 DTND-PEPLAEEL 172 (222)
T ss_pred ccCC-hHHHHHHH
Confidence 4444 33344433
No 110
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.39 E-value=0.11 Score=50.54 Aligned_cols=37 Identities=27% Similarity=0.641 Sum_probs=32.4
Q ss_pred CcccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCcc
Q 018644 306 QRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCRE 342 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~-----~~CP~CR~ 342 (352)
+.|+.|....++++- -|||.||.+|+... ..||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 889999999999876 78999999999943 68999976
No 111
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.19 Score=49.40 Aligned_cols=43 Identities=16% Similarity=0.520 Sum_probs=33.5
Q ss_pred cccCCcccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCCcccc
Q 018644 302 VAEAQRCCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFCREEI 344 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~-~~-pCGH~~C~~C~~~~----~~CP~CR~~i 344 (352)
..+...|+||+....++ ++ --|-.||..|+-.. .+||+--.+.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 35678999999877774 45 77999999999865 7899765544
No 112
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.21 Score=47.99 Aligned_cols=44 Identities=20% Similarity=0.633 Sum_probs=32.8
Q ss_pred ccCCcccCcccCCCCee-----------ecCCCCCchhhhhcC------CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTA-----------FECGHMSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~-----------~pCGH~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
.++..|.||-...-..+ +.|+|.|=..|+.-+ +.||.|++.++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 46779999986533322 399999777777754 789999998875
No 113
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=87.96 E-value=0.37 Score=47.16 Aligned_cols=49 Identities=12% Similarity=-0.030 Sum_probs=40.2
Q ss_pred cccCCcccCcccCCCCeee-cCCCC-CchhhhhcC--CCCCCCccccCCeeec
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM--PQCPFCREEITTRRRV 350 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~--~~CP~CR~~i~~~i~i 350 (352)
+-..++|.+|-+.....++ +|||. +|.+|+... ..||.|....-..++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 3456899999999888888 99999 999999854 6899999876665554
No 114
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.70 E-value=0.24 Score=54.67 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=32.4
Q ss_pred cccCCcccCcccCCC--Cee-----e-cCCCCCchhhhhcC------CCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEK--DTA-----F-ECGHMSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~--~~~-----~-pCGH~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
.+...+|+||+.... +-. - .|.|-|=..|+-++ ..||+||..|+-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 345689999997322 111 1 67788888998887 579999988764
No 115
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.24 E-value=0.27 Score=42.47 Aligned_cols=43 Identities=30% Similarity=0.802 Sum_probs=35.9
Q ss_pred CCcccCcccCCCCeee-----cCCCCCchhhhhcC-------CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDTAF-----ECGHMSCIKCALRM-------PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~-----pCGH~~C~~C~~~~-------~~CP~CR~~i~~~ 347 (352)
-.+|-||.|.-.+.-| =||-..|..|-..+ +.||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5689999998888766 48988999998776 5699999988764
No 116
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=85.40 E-value=0.38 Score=34.36 Aligned_cols=43 Identities=30% Similarity=0.785 Sum_probs=22.6
Q ss_pred CcccCcccCCCCeeecCC-CCCchhhhhcC----CCCCCCccccCCeee
Q 018644 306 QRCCICCEDEKDTAFECG-HMSCIKCALRM----PQCPFCREEITTRRR 349 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~pCG-H~~C~~C~~~~----~~CP~CR~~i~~~i~ 349 (352)
..|+-|+-..+. .+.|. |..|..|+..| ..||+|..++...++
T Consensus 3 ~nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 3 YNCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ----SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred ccChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 358888844333 23775 66999999988 469999999887654
No 117
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=0.4 Score=46.90 Aligned_cols=40 Identities=25% Similarity=0.712 Sum_probs=29.3
Q ss_pred cccCcccCCCCee--e-cCCCCCchhhhhcC--CCCCCCccccCC
Q 018644 307 RCCICCEDEKDTA--F-ECGHMSCIKCALRM--PQCPFCREEITT 346 (352)
Q Consensus 307 ~C~IC~~~~~~~~--~-pCGH~~C~~C~~~~--~~CP~CR~~i~~ 346 (352)
.|+.=.+.++.+. + ||.|.||-+|+..- +.||.|-.+|.+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 3444444555543 3 99999999999876 489999887765
No 118
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.38 E-value=0.52 Score=37.99 Aligned_cols=33 Identities=27% Similarity=0.772 Sum_probs=25.4
Q ss_pred ccccCCcccCcccCCCCeee---cCCCCCchhhhhc
Q 018644 301 EVAEAQRCCICCEDEKDTAF---ECGHMSCIKCALR 333 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~---pCGH~~C~~C~~~ 333 (352)
.+.+...|.+|.....+.+| ||||.+-..|..+
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 34567789999997776443 9999998888754
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.94 E-value=0.64 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=18.9
Q ss_pred CcccCcccCCCCeee--cCCCCCchhhhh--------cCCCCCCCccc
Q 018644 306 QRCCICCEDEKDTAF--ECGHMSCIKCAL--------RMPQCPFCREE 343 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~--pCGH~~C~~C~~--------~~~~CP~CR~~ 343 (352)
..|++....-..++- .|.|.-|.+=.. ..+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 579999998888886 999996643211 22789999874
No 120
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=0.35 Score=37.95 Aligned_cols=41 Identities=29% Similarity=0.592 Sum_probs=29.9
Q ss_pred CCcccCcccCCCC-ee-e-cCCCCCchhhhhcC-------CCCCCCccccC
Q 018644 305 AQRCCICCEDEKD-TA-F-ECGHMSCIKCALRM-------PQCPFCREEIT 345 (352)
Q Consensus 305 ~~~C~IC~~~~~~-~~-~-pCGH~~C~~C~~~~-------~~CP~CR~~i~ 345 (352)
+..|+-|.-..-+ ++ + -|-|.|=..|+.+. ..||+||+...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3567777665555 23 3 89999989998876 46999999754
No 121
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=78.72 E-value=0.59 Score=35.84 Aligned_cols=42 Identities=26% Similarity=0.656 Sum_probs=17.6
Q ss_pred CCcccCcccCCC-C---eee-----cCCCCCchhhhhcC---------------CCCCCCccccCC
Q 018644 305 AQRCCICCEDEK-D---TAF-----ECGHMSCIKCALRM---------------PQCPFCREEITT 346 (352)
Q Consensus 305 ~~~C~IC~~~~~-~---~~~-----pCGH~~C~~C~~~~---------------~~CP~CR~~i~~ 346 (352)
+.+|.||++... + +.+ .|++.+=..|+..+ ..||.|+++|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998644 2 222 45544444666543 249999999864
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=77.82 E-value=4.3 Score=40.12 Aligned_cols=45 Identities=31% Similarity=0.721 Sum_probs=34.1
Q ss_pred cCCcccCcccCC--CC-eee--cCCCCCchhhhhcC----CCCCCCccccCCee
Q 018644 304 EAQRCCICCEDE--KD-TAF--ECGHMSCIKCALRM----PQCPFCREEITTRR 348 (352)
Q Consensus 304 ~~~~C~IC~~~~--~~-~~~--pCGH~~C~~C~~~~----~~CP~CR~~i~~~i 348 (352)
-...|++|.+.. .+ ..+ ||||..|..|.... ..||.||.+.....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 347899999843 22 334 89999999998876 57999998776543
No 123
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=76.19 E-value=0.84 Score=46.08 Aligned_cols=42 Identities=31% Similarity=0.721 Sum_probs=0.0
Q ss_pred CCcccCcccC-------------------CCCeee-cCCCCCchhhhhcC-------------CCCCCCccccCC
Q 018644 305 AQRCCICCED-------------------EKDTAF-ECGHMSCIKCALRM-------------PQCPFCREEITT 346 (352)
Q Consensus 305 ~~~C~IC~~~-------------------~~~~~~-pCGH~~C~~C~~~~-------------~~CP~CR~~i~~ 346 (352)
..+|++|... +...+| ||||+.-.+.+.-+ ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 7899999852 233467 99999766666643 359999999876
No 124
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.94 E-value=0.84 Score=49.15 Aligned_cols=44 Identities=27% Similarity=0.712 Sum_probs=36.8
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-------~~CP~CR~~i~~ 346 (352)
.-..+|+||+......+. .|-|.||..|...+ ..||+|+..++.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 456899999998888866 99999999998865 469999977654
No 125
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.63 E-value=2.8 Score=42.16 Aligned_cols=10 Identities=40% Similarity=1.152 Sum_probs=8.2
Q ss_pred CCCCCccccC
Q 018644 336 QCPFCREEIT 345 (352)
Q Consensus 336 ~CP~CR~~i~ 345 (352)
.||+||+++-
T Consensus 342 ~CPtCRa~FC 351 (358)
T PF10272_consen 342 PCPTCRAKFC 351 (358)
T ss_pred CCCCCcccce
Confidence 4999999863
No 126
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=72.23 E-value=12 Score=35.14 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=28.0
Q ss_pred CceEEEEEEeCCccCCc--------------cHHHHHHH-hcCCcEEEEEeecC
Q 018644 171 GLHHVLVIITSGQVATG--------------SQQEQETI-SSYPLSIVLVGVGD 209 (352)
Q Consensus 171 ~~Y~VLlIitDG~i~d~--------------~~~~~~~i-S~~PlSIiiVGVG~ 209 (352)
.+=-||++|+||...|. ++++.+.| ..-++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC
Confidence 34569999999988763 23334444 55689999999986
No 127
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=71.72 E-value=2.3 Score=41.90 Aligned_cols=44 Identities=27% Similarity=0.660 Sum_probs=29.2
Q ss_pred ccCCcccCcccC-------------------CCCeee-cCCCCCchhhhhcC-------------CCCCCCccccCC
Q 018644 303 AEAQRCCICCED-------------------EKDTAF-ECGHMSCIKCALRM-------------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~-------------------~~~~~~-pCGH~~C~~C~~~~-------------~~CP~CR~~i~~ 346 (352)
..+.+||+|+.. +.+-+| ||||+.-..-..-+ ..||.|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 346899999862 233457 99998554443322 359999887765
No 128
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=71.08 E-value=2.4 Score=30.17 Aligned_cols=35 Identities=31% Similarity=0.751 Sum_probs=24.6
Q ss_pred cccCccc--CCCCeee-cCC-----CCCchhhhhcC------CCCCCCc
Q 018644 307 RCCICCE--DEKDTAF-ECG-----HMSCIKCALRM------PQCPFCR 341 (352)
Q Consensus 307 ~C~IC~~--~~~~~~~-pCG-----H~~C~~C~~~~------~~CP~CR 341 (352)
.|.||++ ...+..+ ||. |.+=..|+.++ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 3334555 985 55667888876 4699995
No 129
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=3 Score=40.49 Aligned_cols=30 Identities=33% Similarity=0.819 Sum_probs=26.0
Q ss_pred cCCcccCcccCCCCeee-cC----CCCCchhhhhc
Q 018644 304 EAQRCCICCEDEKDTAF-EC----GHMSCIKCALR 333 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~-pC----GH~~C~~C~~~ 333 (352)
..+.|.+|.|+..|.-| .| .|.||..|...
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHH
Confidence 44899999999999998 88 57799999874
No 130
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=70.23 E-value=13 Score=34.20 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=43.5
Q ss_pred eeeecCCCcHHHHHHHHHHHHHc--------CCce-EEEEEEeCCccCCccHHHHHHH----hcCCcEEEEEeec--CCC
Q 018644 147 VQYFGPTSYAPMVEAAVDIVEES--------GGLH-HVLVIITSGQVATGSQQEQETI----SSYPLSIVLVGVG--DGP 211 (352)
Q Consensus 147 v~l~gPt~fapiI~~a~~~a~~~--------~~~Y-~VLlIitDG~i~d~~~~~~~~i----S~~PlSIiiVGVG--~~~ 211 (352)
+.-.|-|...--|+.+.+..++. .+.| .+..+||||.-+| .=+...++ -.---|++..+|| ++|
T Consensus 73 L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD-~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad 151 (207)
T COG4245 73 LTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD-DWQAGAALVFQGERRAKSVAAFSVGVQGAD 151 (207)
T ss_pred eecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch-HHHhHHHHhhhcccccceEEEEEecccccc
Confidence 44457788888888888876543 1234 3345699999988 23333334 2223455555555 466
Q ss_pred cchhccccC
Q 018644 212 WESIQKFHD 220 (352)
Q Consensus 212 f~~m~~LD~ 220 (352)
-..++++-.
T Consensus 152 ~~~L~qit~ 160 (207)
T COG4245 152 NKTLNQITE 160 (207)
T ss_pred cHHHHHHHH
Confidence 666666654
No 131
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=69.75 E-value=1 Score=39.05 Aligned_cols=31 Identities=26% Similarity=0.617 Sum_probs=24.0
Q ss_pred cCCcccCcccCCCC---eee-cCC------CCCchhhhhcC
Q 018644 304 EAQRCCICCEDEKD---TAF-ECG------HMSCIKCALRM 334 (352)
Q Consensus 304 ~~~~C~IC~~~~~~---~~~-pCG------H~~C~~C~~~~ 334 (352)
-..+|.||++.--+ ++. +|| |+||..|..++
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 36899999996554 343 898 44899999987
No 132
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=69.04 E-value=1.7 Score=50.40 Aligned_cols=45 Identities=27% Similarity=0.767 Sum_probs=31.8
Q ss_pred ccCCcccCcccCCCC--eee--cCCCCCchhhhhcC--------------CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKD--TAF--ECGHMSCIKCALRM--------------PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~--~~~--pCGH~~C~~C~~~~--------------~~CP~CR~~i~~~ 347 (352)
..+..|.||+...-. +.+ .|+|.|=-.|..+. -.||+|.++|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 345789999986444 333 99999755555432 3699999998753
No 133
>PHA03096 p28-like protein; Provisional
Probab=68.38 E-value=2 Score=41.80 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred CcccCcccCCCC--------eee-cCCCCCchhhhhcC
Q 018644 306 QRCCICCEDEKD--------TAF-ECGHMSCIKCALRM 334 (352)
Q Consensus 306 ~~C~IC~~~~~~--------~~~-pCGH~~C~~C~~~~ 334 (352)
..|.||++.... ..+ .|-|.||..|...+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 679999985332 345 99999999999965
No 134
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=67.44 E-value=0.89 Score=44.36 Aligned_cols=42 Identities=36% Similarity=0.789 Sum_probs=28.9
Q ss_pred CCcccCcccCCCC-eee---cCCCCCchhhhhcC---------------------------CCCCCCccccCC
Q 018644 305 AQRCCICCEDEKD-TAF---ECGHMSCIKCALRM---------------------------PQCPFCREEITT 346 (352)
Q Consensus 305 ~~~C~IC~~~~~~-~~~---pCGH~~C~~C~~~~---------------------------~~CP~CR~~i~~ 346 (352)
...|+||+--+.+ ..| +|-|.+=..|..+. ..||+||..|.-
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 5789999865444 223 99999655565432 249999998864
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.32 E-value=2.1 Score=41.38 Aligned_cols=48 Identities=17% Similarity=0.497 Sum_probs=24.5
Q ss_pred cCCcccCcccCCCCeee-cC---CCC--CchhhhhcC----CCCCCCccccCCeeecC
Q 018644 304 EAQRCCICCEDEKDTAF-EC---GHM--SCIKCALRM----PQCPFCREEITTRRRVY 351 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~-pC---GH~--~C~~C~~~~----~~CP~CR~~i~~~i~if 351 (352)
....||||-..+.-.++ .= |+. .|..|...+ ..||.|-..-...+..|
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 45899999998888776 32 544 899999987 57999998877665544
No 136
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.05 E-value=2.2 Score=37.06 Aligned_cols=39 Identities=31% Similarity=0.784 Sum_probs=26.9
Q ss_pred ccCCcccCcccCCCCeee-cCCCC-------CchhhhhcC--------CCCCCCcccc
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHM-------SCIKCALRM--------PQCPFCREEI 344 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~-------~C~~C~~~~--------~~CP~CR~~i 344 (352)
.++..|-||.. .-.- .|||. +|..|.-+. +.|-.||...
T Consensus 63 ~ddatC~IC~K---TKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHK---TKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhh---cccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 46789999983 2222 89998 466776554 5699998653
No 137
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=64.50 E-value=21 Score=34.33 Aligned_cols=101 Identities=12% Similarity=0.219 Sum_probs=62.5
Q ss_pred ccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC----Cce
Q 018644 99 LFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG----GLH 173 (352)
Q Consensus 99 ~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~----~~Y 173 (352)
.|-.- ++.+.+|=+.-. ++ =+.|. ..++.+ ++.|..+...|-|-.++-|.++.+...+.. ..-
T Consensus 111 AYq~RdkvavI~F~G~~A---~l-ll~pT----~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~ 178 (261)
T COG1240 111 AYQRRDKVAVIAFRGEKA---EL-LLPPT----SSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRR 178 (261)
T ss_pred HHHccceEEEEEecCCcc---eE-EeCCc----ccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcc
Confidence 45555 888899965321 11 11111 234444 555666778899999999999998866442 356
Q ss_pred EEEEEEeCCccCCccH-----HHHHHH---hcCCcEEEEEeecCCC
Q 018644 174 HVLVIITSGQVATGSQ-----QEQETI---SSYPLSIVLVGVGDGP 211 (352)
Q Consensus 174 ~VLlIitDG~i~d~~~-----~~~~~i---S~~PlSIiiVGVG~~~ 211 (352)
.++|+||||.-++... ++.++- ...++-+++|+.....
T Consensus 179 ~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 179 PVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred eEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 7889999998766421 222222 4456666777766554
No 138
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=63.77 E-value=4.1 Score=32.34 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=28.9
Q ss_pred CcccCcccC-----CCCeee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018644 306 QRCCICCED-----EKDTAF-ECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 306 ~~C~IC~~~-----~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
..|+-|... +..++. -|-|.|=..|+.+. ..||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 456666542 222445 99999999999987 46999999764
No 139
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=59.70 E-value=6.4 Score=38.84 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=30.5
Q ss_pred cCCcccCcccCCCCeee----cCCCC--CchhhhhcC----CCCCCCccc
Q 018644 304 EAQRCCICCEDEKDTAF----ECGHM--SCIKCALRM----PQCPFCREE 343 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~----pCGH~--~C~~C~~~~----~~CP~CR~~ 343 (352)
....||||-..+.-.++ .=|+. .|..|...+ .+||.|-..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 56899999998876543 23444 799999987 479999863
No 140
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=57.75 E-value=4 Score=40.18 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=36.6
Q ss_pred ccCCcccCcccCCCCeee-cCCCC-CchhhhhcC-----CCCCCCccccCCeee
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRM-----PQCPFCREEITTRRR 349 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~-----~~CP~CR~~i~~~i~ 349 (352)
.....|.+|+++..-+.. +|||. ||..|+.+. ..|++|...+.+...
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 456789999998777776 99999 898886654 569999887766543
No 141
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=3.6 Score=40.11 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=8.8
Q ss_pred CCCCCCccccC
Q 018644 335 PQCPFCREEIT 345 (352)
Q Consensus 335 ~~CP~CR~~i~ 345 (352)
..||+||+.+-
T Consensus 355 ~~cp~cr~~fc 365 (381)
T KOG3899|consen 355 AQCPTCRKNFC 365 (381)
T ss_pred CCCcchhhceE
Confidence 36999999764
No 142
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.02 E-value=5 Score=40.56 Aligned_cols=43 Identities=26% Similarity=0.524 Sum_probs=32.1
Q ss_pred cccCCcccCcccCCCC----eeecCCCCCchhhhhcC-------CCCCCCcccc
Q 018644 302 VAEAQRCCICCEDEKD----TAFECGHMSCIKCALRM-------PQCPFCREEI 344 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~----~~~pCGH~~C~~C~~~~-------~~CP~CR~~i 344 (352)
...-..|||=.+.-.+ +.+.|||..|..=+.++ -+||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 3456889997764433 34599999999999887 3699997654
No 143
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=4.7 Score=40.90 Aligned_cols=31 Identities=35% Similarity=0.868 Sum_probs=22.0
Q ss_pred cCCcccCcc-cCCCC-eee---cCCCCCchhhhhcC
Q 018644 304 EAQRCCICC-EDEKD-TAF---ECGHMSCIKCALRM 334 (352)
Q Consensus 304 ~~~~C~IC~-~~~~~-~~~---pCGH~~C~~C~~~~ 334 (352)
...+|.||+ +.... -.+ .|+|.||..|..+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHH
Confidence 356899999 33222 122 89999999999864
No 144
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=53.73 E-value=28 Score=36.00 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC-CceEEEEEEeCCc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG-GLHHVLVIITSGQ 183 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~-~~Y~VLlIitDG~ 183 (352)
++...|++++++--.. +--+| |+|...|+.|++..++.. .+|- ||+||||.
T Consensus 326 ~~k~~~~~e~i~fL~~----~f~GG-TD~~~~l~~al~~~k~~~~~~ad-iv~ITDg~ 377 (437)
T COG2425 326 YEKKIDIEELIEFLSY----VFGGG-TDITKALRSALEDLKSRELFKAD-IVVITDGE 377 (437)
T ss_pred cCCccCHHHHHHHHhh----hcCCC-CChHHHHHHHHHHhhcccccCCC-EEEEeccH
Confidence 4556799999874333 33345 999999999999998642 2344 48999994
No 145
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.21 E-value=8.5 Score=23.93 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=9.9
Q ss_pred cccCcccCCCCee-e-c-CCCCC
Q 018644 307 RCCICCEDEKDTA-F-E-CGHMS 326 (352)
Q Consensus 307 ~C~IC~~~~~~~~-~-p-CGH~~ 326 (352)
.||-|.......+ + | |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 4666665444333 3 3 66653
No 146
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.26 E-value=2.2 Score=32.97 Aligned_cols=38 Identities=24% Similarity=0.603 Sum_probs=17.7
Q ss_pred CcccCcccCCCCeeecCCCCCchhhhhcC---CCCCCCccccCC
Q 018644 306 QRCCICCEDEKDTAFECGHMSCIKCALRM---PQCPFCREEITT 346 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~pCGH~~C~~C~~~~---~~CP~CR~~i~~ 346 (352)
..||.|.....+. . ||..|..|.... ..||-|.++++.
T Consensus 2 ~~CP~C~~~L~~~--~-~~~~C~~C~~~~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--G-GHYHCEACQKDYKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEE--T-TEEEETTT--EEEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEe--C-CEEECccccccceecccCCCcccHHHH
Confidence 4688888542221 2 666777777655 457777776543
No 147
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.20 E-value=7.3 Score=42.74 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.7
Q ss_pred CcccCcccCCCCee----e-cCCCCCchhhhhcC----------CCCCCCccccCC
Q 018644 306 QRCCICCEDEKDTA----F-ECGHMSCIKCALRM----------PQCPFCREEITT 346 (352)
Q Consensus 306 ~~C~IC~~~~~~~~----~-pCGH~~C~~C~~~~----------~~CP~CR~~i~~ 346 (352)
..|.+|+....|.. + .|+|.+|..|+..+ ..|+.|..-|..
T Consensus 100 ~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 100 PVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred chhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 44555555533322 1 49999999999865 458888765543
No 148
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=48.73 E-value=9 Score=37.73 Aligned_cols=41 Identities=24% Similarity=0.534 Sum_probs=31.1
Q ss_pred ccCCcccCcccCCCCeee-c----CCCC--CchhhhhcC----CCCCCCccc
Q 018644 303 AEAQRCCICCEDEKDTAF-E----CGHM--SCIKCALRM----PQCPFCREE 343 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-p----CGH~--~C~~C~~~~----~~CP~CR~~ 343 (352)
.....||||-..+.-.++ . =|+. .|..|...+ .+||.|-..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 346799999998876544 3 3444 899999987 479999875
No 149
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.88 E-value=68 Score=31.16 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHhhCCceeee-cCCCc-----HHHHHHHHHHHHHcC--CceEEEEEEeCCc--cCCc----cHHHHH
Q 018644 128 SPCQGFEHVLECYRKNVPNVQYF-GPTSY-----APMVEAAVDIVEESG--GLHHVLVIITSGQ--VATG----SQQEQE 193 (352)
Q Consensus 128 p~~~G~~gvl~~Y~~~l~~v~l~-gPt~f-----apiI~~a~~~a~~~~--~~Y~VLlIitDG~--i~d~----~~~~~~ 193 (352)
+.-.|++++++.-++-.+.+.+. -|+.+ ++=|-.|++.+.+.+ ..|=| |||+-|. +.|+ .+..-+
T Consensus 23 ~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dv-iii~RGGGs~eDL~~FN~e~var 101 (319)
T PF02601_consen 23 PTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDV-IIIIRGGGSIEDLWAFNDEEVAR 101 (319)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccE-EEEecCCCChHHhcccChHHHHH
Confidence 44568899998888888876654 35554 445666777766543 35777 5566664 3443 356667
Q ss_pred HH--hcCCcEEEEEeec-CCCcchhc
Q 018644 194 TI--SSYPLSIVLVGVG-DGPWESIQ 216 (352)
Q Consensus 194 ~i--S~~PlSIiiVGVG-~~~f~~m~ 216 (352)
+| |.+| ||.||| ..||....
T Consensus 102 ai~~~~~P---visaIGHe~D~ti~D 124 (319)
T PF02601_consen 102 AIAASPIP---VISAIGHETDFTIAD 124 (319)
T ss_pred HHHhCCCC---EEEecCCCCCchHHH
Confidence 77 7777 899999 44665543
No 150
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.79 E-value=8.6 Score=41.33 Aligned_cols=27 Identities=26% Similarity=0.796 Sum_probs=21.3
Q ss_pred CCeee-cCCCCCchhhhhcC--CCCCCCccc
Q 018644 316 KDTAF-ECGHMSCIKCALRM--PQCPFCREE 343 (352)
Q Consensus 316 ~~~~~-pCGH~~C~~C~~~~--~~CP~CR~~ 343 (352)
..+++ -|||..|+.|++.+ ..|| |...
T Consensus 26 ~~Pvsl~cghtic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 26 LEPVSLQCGHTICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred cCcccccccchHHHHHHHhHhhccCC-CCcc
Confidence 33455 99999999999998 6799 6543
No 151
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.28 E-value=8.4 Score=34.27 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=21.7
Q ss_pred CCCchhhhhcC-CCCCCCccccCCeee
Q 018644 324 HMSCIKCALRM-PQCPFCREEITTRRR 349 (352)
Q Consensus 324 H~~C~~C~~~~-~~CP~CR~~i~~~i~ 349 (352)
+.||..|..+. ..||.|..+|....+
T Consensus 28 ~~fC~kCG~~tI~~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 28 EKFCSKCGAKTITSCPNCSTPIRGDYH 54 (158)
T ss_pred HHHHHHhhHHHHHHCcCCCCCCCCcee
Confidence 34899999987 789999999988644
No 152
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.83 E-value=55 Score=35.16 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=28.7
Q ss_pred CCceEEEEEEeCCccCCccHH------------HHHHH---hc-CCcEEEEEeecCC
Q 018644 170 GGLHHVLVIITSGQVATGSQQ------------EQETI---SS-YPLSIVLVGVGDG 210 (352)
Q Consensus 170 ~~~Y~VLlIitDG~i~d~~~~------------~~~~i---S~-~PlSIiiVGVG~~ 210 (352)
..+=-||++|+||.-.|- .+ .++.| .+ -|+=++-||||..
T Consensus 513 ~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 513 PEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred cccceEEEEEeCCCcCCc-cccccCchhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 446789999999987762 22 34444 55 4899999999874
No 153
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.65 E-value=14 Score=36.56 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=15.1
Q ss_pred ccccccCCC-ccceeeecCCC
Q 018644 95 KELVLFDGD-CIRCYGFGDDT 114 (352)
Q Consensus 95 ~vl~~yd~d-~ip~~GFGa~~ 114 (352)
.|+..|..| .-.+|-.|...
T Consensus 97 sVvvEYt~D~~tDMFQiGRst 117 (429)
T KOG3842|consen 97 SVVVEYTHDSDTDMFQIGRST 117 (429)
T ss_pred eEEEEeccCCCcchhhhccCc
Confidence 477788888 88888888753
No 154
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=41.56 E-value=12 Score=40.45 Aligned_cols=44 Identities=14% Similarity=0.397 Sum_probs=28.9
Q ss_pred cccccCCcccCcccCCCCeeecCCCCCch--hhhhcC-----------CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAFECGHMSCI--KCALRM-----------PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~pCGH~~C~--~C~~~~-----------~~CP~CR~~i~~ 346 (352)
..+.-.+.|+++. +.+.+||.+..|+ .|.... |.||+|.+.+.-
T Consensus 301 t~~~vSL~CPl~~---~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 301 TSLRVSLNCPLSK---MRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred ccceeEecCCccc---ceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 3445678999999 4444566655555 454422 789999987643
No 155
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=12 Score=38.51 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=26.2
Q ss_pred ccCCcccCcccCCCC-eee-cCCCCCchhhhhc
Q 018644 303 AEAQRCCICCEDEKD-TAF-ECGHMSCIKCALR 333 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~-~~~-pCGH~~C~~C~~~ 333 (352)
....+|-||++.... .+. .|||.||..|...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~ 100 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTG 100 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHH
Confidence 456799999998876 555 9999999999885
No 156
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=14 Score=35.43 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=29.7
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhc
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALR 333 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~ 333 (352)
.++++-.-|..|+...+++++ |=||.||++|+..
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe 72 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILE 72 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHH
Confidence 345667889999999999999 9999999999874
No 157
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=40.40 E-value=7.3 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.847 Sum_probs=11.1
Q ss_pred CCCchhhhhcC--------CCCCCCcc
Q 018644 324 HMSCIKCALRM--------PQCPFCRE 342 (352)
Q Consensus 324 H~~C~~C~~~~--------~~CP~CR~ 342 (352)
|.||..|...+ ..||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 67888888865 35888875
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=40.22 E-value=9.2 Score=28.51 Aligned_cols=32 Identities=28% Similarity=0.656 Sum_probs=17.2
Q ss_pred ccCCcccCcccCCCCee---e--cCCCCCchhhhhcC
Q 018644 303 AEAQRCCICCEDEKDTA---F--ECGHMSCIKCALRM 334 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~---~--pCGH~~C~~C~~~~ 334 (352)
.+...|.+|...+.-.. - .||+.+|..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 45678999998774322 1 89999999998743
No 159
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.38 E-value=11 Score=32.45 Aligned_cols=23 Identities=35% Similarity=0.769 Sum_probs=18.2
Q ss_pred CchhhhhcC-CCCCCCccccCCee
Q 018644 326 SCIKCALRM-PQCPFCREEITTRR 348 (352)
Q Consensus 326 ~C~~C~~~~-~~CP~CR~~i~~~i 348 (352)
||..|.... ..||+|..+|....
T Consensus 30 fcskcgeati~qcp~csasirgd~ 53 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDY 53 (160)
T ss_pred HHhhhchHHHhcCCccCCcccccc
Confidence 688887754 78999999988753
No 160
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=37.18 E-value=5.8 Score=45.60 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=35.1
Q ss_pred cccCCcccCcccCCCC--eeecCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEKD--TAFECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~--~~~pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..+...|.+|.+..++ .++.|||.+|..|...+ ..||+|..-+..
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 3456799999997764 44499999999998876 679999865443
No 161
>PLN02189 cellulose synthase
Probab=36.10 E-value=25 Score=39.98 Aligned_cols=42 Identities=31% Similarity=0.756 Sum_probs=30.3
Q ss_pred cCCcccCcccCC----CCeee----cCCCCCchhhhhcC-----CCCCCCccccC
Q 018644 304 EAQRCCICCEDE----KDTAF----ECGHMSCIKCALRM-----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~----~~~~~----pCGH~~C~~C~~~~-----~~CP~CR~~i~ 345 (352)
....|.||-|.. ..-.| -||--+|+.|..-- +.||.|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999862 22233 56667999999744 67999998765
No 162
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=35.66 E-value=16 Score=35.45 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=15.3
Q ss_pred CCCCchhhhhcC--------CCCCCCccccCC
Q 018644 323 GHMSCIKCALRM--------PQCPFCREEITT 346 (352)
Q Consensus 323 GH~~C~~C~~~~--------~~CP~CR~~i~~ 346 (352)
.|.||..|..++ ..||.|+...-.
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fP 141 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHFP 141 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccCC
Confidence 366777777766 347777765543
No 163
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.43 E-value=1.8e+02 Score=33.68 Aligned_cols=121 Identities=13% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHHhccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc
Q 018644 91 YITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES 169 (352)
Q Consensus 91 ~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~ 169 (352)
..+..+|.-..++ .+-..-|+-...+...||+ ++-+++--.-.+..++.+.+++..|-++|.-..+.|-+.-.+.
T Consensus 248 ~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~----~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~ 323 (1104)
T KOG2353|consen 248 QTVNEILDTLSDNDFVNILTFNSEVNPVSPCFN----GTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDY 323 (1104)
T ss_pred HHHHHHHHhcccCCeEEEEeeccccCccccccc----CceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHh
Confidence 3444556666666 7888888877665555643 3455555566677788888899999999999999987764422
Q ss_pred ---------CCceEEEEEEeCCccCCccHHHHHHHh----cCCcEEEEEeecCCCcchhc
Q 018644 170 ---------GGLHHVLVIITSGQVATGSQQEQETIS----SYPLSIVLVGVGDGPWESIQ 216 (352)
Q Consensus 170 ---------~~~Y~VLlIitDG~i~d~~~~~~~~iS----~~PlSIiiVGVG~~~f~~m~ 216 (352)
+.-+.+.++||||...+ .+++-+... ..-++=..||-+..+|..+.
T Consensus 324 n~s~~~~~~~~C~~~iml~tdG~~~~-~~~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 324 NDSRANTQRSPCNQAIMLITDGVDEN-AKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred ccccccccccccceeeEEeecCCccc-HHHHHHhhccCCCceEEEEEEecccccccccch
Confidence 12578889999999888 333333331 22345556676666766644
No 164
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.38 E-value=2e+02 Score=27.33 Aligned_cols=91 Identities=16% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHhhCCceee-ecCCCcHHHHHHH-----HHHHHHcCCceEEEEEEeCCc-cCCccHHHHHHHhcCCcEE
Q 018644 130 CQGFEHVLECYRKNVPNVQY-FGPTSYAPMVEAA-----VDIVEESGGLHHVLVIITSGQ-VATGSQQEQETISSYPLSI 202 (352)
Q Consensus 130 ~~G~~gvl~~Y~~~l~~v~l-~gPt~fapiI~~a-----~~~a~~~~~~Y~VLlIitDG~-i~d~~~~~~~~iS~~PlSI 202 (352)
..-++++++..-..-..+-+ .|+.+|.|+.++. .+..++.+..-.|+.+||-|+ ..|......++++.+|=++
T Consensus 67 ~r~fD~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~ 146 (241)
T PRK13886 67 TRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALLDTVSGFAQLASQFPAEC 146 (241)
T ss_pred hhhHHHHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCcccHHHHHHHHHHHHHcCCCc
Confidence 44567887766533333444 6899999998864 456666666777777888885 4443333333347777433
Q ss_pred EEEeec----------CCCcchhccccC
Q 018644 203 VLVGVG----------DGPWESIQKFHD 220 (352)
Q Consensus 203 iiVGVG----------~~~f~~m~~LD~ 220 (352)
-+|=+= +.+|+.|+..+.
T Consensus 147 ~~Vvw~N~~~G~~~~~gk~fe~~~~y~~ 174 (241)
T PRK13886 147 LFVVWLNPYWGPIEHEGKGFEQMKAYTA 174 (241)
T ss_pred eEEEEecCccCcccccCCCHHHhHhhHH
Confidence 333221 146777777665
No 165
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=34.78 E-value=22 Score=31.86 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=30.4
Q ss_pred ccCCcccCcccCCCCeeecCCCC-----CchhhhhcC------CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAFECGHM-----SCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~pCGH~-----~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
.....|-||.+...+...||.-. +=.+|..++ ..|++|+.+..-
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45679999998865433377543 345788766 579999987643
No 166
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.33 E-value=18 Score=26.82 Aligned_cols=29 Identities=38% Similarity=0.824 Sum_probs=23.0
Q ss_pred eecCCCC--CchhhhhcC--CCCCCCccccCCe
Q 018644 319 AFECGHM--SCIKCALRM--PQCPFCREEITTR 347 (352)
Q Consensus 319 ~~pCGH~--~C~~C~~~~--~~CP~CR~~i~~~ 347 (352)
++-|-+- ||..|+..+ ..||.|...+..+
T Consensus 22 A~ICSfECTFC~~C~e~~l~~~CPNCgGelv~R 54 (57)
T PF06906_consen 22 AYICSFECTFCADCAETMLNGVCPNCGGELVRR 54 (57)
T ss_pred ceEEeEeCcccHHHHHHHhcCcCcCCCCccccC
Confidence 3456655 999999988 7899999887664
No 167
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=34.27 E-value=1.2e+02 Score=32.46 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=87.3
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccC-CCCCchHHHHHHHHhccccccCCCccceeeecCCCCC---CCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVD-GDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTR---DEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~-~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~---~~~~f~~~ 124 (352)
+-+.+-||.|+|-.. ++++ ....--..+|+..++.-++--.+- ...|+|-.+..+ -+.|-+|+
T Consensus 447 la~TLLvD~S~St~a------------~mdetrRvidl~~eaL~~la~~~qa~gd~-~~~~~fts~rr~~vri~tvk~FD 513 (637)
T COG4548 447 LAFTLLVDVSASTDA------------KMDETRRVIDLFHEALLVLAHGHQALGDS-EDILDFTSRRRPWVRINTVKDFD 513 (637)
T ss_pred ceeEEEeecccchHH------------HhhhhhhhHHHHHHHHHHhhchhhhhCCH-HHhcCchhhcCcceeeeeeeccc
Confidence 456667777777431 2210 111244566777766665554433 444666554332 12233332
Q ss_pred CC-CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCc--------cHHHHHHH
Q 018644 125 EN-DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATG--------SQQEQETI 195 (352)
Q Consensus 125 ~~-~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~--------~~~~~~~i 195 (352)
.. .+.+ ...+..+++.-.|--..-|++|.+.--..+++=-.||++|||.-+|. .+.|.+++
T Consensus 514 es~~~~~----------~~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV 583 (637)
T COG4548 514 ESMGETV----------GPRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAV 583 (637)
T ss_pred ccccccc----------chhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHH
Confidence 11 1111 11122334445677788999988775544456677889999998885 23556666
Q ss_pred ---hcCCcEEEEEeecCCCcchhccccCCCCCcceeeEeeec
Q 018644 196 ---SSYPLSIVLVGVGDGPWESIQKFHDKIPALQFDNFHFVN 234 (352)
Q Consensus 196 ---S~~PlSIiiVGVG~~~f~~m~~LD~~~~~r~rDnvqFV~ 234 (352)
-+.-|+++-|=|-...-+....+-+ .|..-||+
T Consensus 584 ~eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 584 IEARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HHHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 4567888888777665555544433 35666665
No 168
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=33.94 E-value=22 Score=28.83 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=30.0
Q ss_pred CCcccCcccCCCCeeecCCCCCchhhhhcCCCCCCCccccCC
Q 018644 305 AQRCCICCEDEKDTAFECGHMSCIKCALRMPQCPFCREEITT 346 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~pCGH~~C~~C~~~~~~CP~CR~~i~~ 346 (352)
...|.+|-.... .=||.+|..|+-+-..|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~----q~g~~YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVH----QPGAKYCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Cccccccccccc----cCCCccChhhhcccCcccccCCeecc
Confidence 457999975421 45888999999999999999988844
No 169
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=32.51 E-value=38 Score=24.57 Aligned_cols=21 Identities=33% Similarity=0.989 Sum_probs=13.4
Q ss_pred cCCCCCchhhhhcC----CCCCCCc
Q 018644 321 ECGHMSCIKCALRM----PQCPFCR 341 (352)
Q Consensus 321 pCGH~~C~~C~~~~----~~CP~CR 341 (352)
.|++.||.+|-.-+ -.||.|-
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 78899999998754 6799984
No 170
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=32.07 E-value=44 Score=38.89 Aligned_cols=42 Identities=29% Similarity=0.746 Sum_probs=31.2
Q ss_pred CCcccCcccCCCCeee--cCCCC-----CchhhhhcC-------CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDTAF--ECGHM-----SCIKCALRM-------PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~--pCGH~-----~C~~C~~~~-------~~CP~CR~~i~~~ 347 (352)
...|+-|-..-.. .+ .||+. .|..|.... ..||-|..+....
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 3899999975333 36 49976 499998875 2799999887664
No 171
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=31.29 E-value=1e+02 Score=29.04 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH
Q 018644 157 PMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI 195 (352)
Q Consensus 157 piI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i 195 (352)
|++..+++.++++++.-|++=+++||.|+--.+-..+++
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~ 52 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALI 52 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHH
Confidence 677788888887777788888888888876434444444
No 172
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=30.97 E-value=6.1 Score=33.15 Aligned_cols=40 Identities=23% Similarity=0.637 Sum_probs=26.5
Q ss_pred cCCcccCcccCCC---C-eee--cCCCCCchhhhhcC-----CCCCCCccc
Q 018644 304 EAQRCCICCEDEK---D-TAF--ECGHMSCIKCALRM-----PQCPFCREE 343 (352)
Q Consensus 304 ~~~~C~IC~~~~~---~-~~~--pCGH~~C~~C~~~~-----~~CP~CR~~ 343 (352)
+...|..|..... + ... .|+|.+|..|.... +.|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 4568999987432 1 122 89999999998754 458888763
No 173
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=30.69 E-value=3.5e+02 Score=24.41 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=66.2
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc---cCCC-ccceeeecCCCCCC-------CC
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRD-------EG 119 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~---yd~d-~ip~~GFGa~~~~~-------~~ 119 (352)
+++.||.+.|=. -. .+....+.+.|++.+-.+++. ..+. .+-++.||...+.. .+
T Consensus 2 ~vflID~s~sM~-------------~~-~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~ 67 (224)
T PF03731_consen 2 TVFLIDVSPSMF-------------EP-SSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYEN 67 (224)
T ss_dssp EEEEEE-SCGGG-------------S--BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STT
T ss_pred EEEEEECCHHHC-------------CC-CCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCc
Confidence 467889886632 11 011122788888888777654 3333 99999999876543 34
Q ss_pred cccCCCCCCCCCCHHHHHHHHHhhCCc-------eeeecCCCcHHHHHHHHHHHHH--cCCc--eEEEEEEeCCcc-C-C
Q 018644 120 VFSFQENDSPCQGFEHVLECYRKNVPN-------VQYFGPTSYAPMVEAAVDIVEE--SGGL--HHVLVIITSGQV-A-T 186 (352)
Q Consensus 120 ~f~~~~~~p~~~G~~gvl~~Y~~~l~~-------v~l~gPt~fapiI~~a~~~a~~--~~~~--Y~VLlIitDG~i-~-d 186 (352)
++.+.+-++ -+++.+.+.-+. +.. -.-.....+..++-.+..+.++ ...+ .--++++||++- . +
T Consensus 68 i~~l~~l~~--~~~~~l~~L~~~-~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~ 144 (224)
T PF03731_consen 68 IFVLQPLDP--PSAERLKELEEL-LKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHED 144 (224)
T ss_dssp EEEEEECC----BHHHHHHHHTT-SHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-
T ss_pred eEEeecCCc--cCHHHHHHHHHh-hcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCC
Confidence 555443121 133333221111 111 0112345677777777776654 2222 244577998742 2 2
Q ss_pred --ccHHHHHH--H---hcCCcEEEEEee
Q 018644 187 --GSQQEQET--I---SSYPLSIVLVGV 207 (352)
Q Consensus 187 --~~~~~~~~--i---S~~PlSIiiVGV 207 (352)
..+.+.+. . ...-+.|..+.+
T Consensus 145 ~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 145 DDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHHHHHHHhhccccchhcCcceeEeec
Confidence 12223222 1 455666666666
No 174
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.48 E-value=34 Score=27.05 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=17.1
Q ss_pred cCCcccCcccCCC----Ceee----cCCCCCchhhhhc-----CCCCCCCccccCC
Q 018644 304 EAQRCCICCEDEK----DTAF----ECGHMSCIKCALR-----MPQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~~----~~~~----pCGH~~C~~C~~~-----~~~CP~CR~~i~~ 346 (352)
+...|.||-+..- --+| -|+--+|+.|..- .+.||.|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4568999998422 1233 6666689999873 2679999976553
No 175
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.95 E-value=93 Score=32.90 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH-----hcCCcEEEEEe---ecCCCcchhccccC
Q 018644 155 YAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI-----SSYPLSIVLVG---VGDGPWESIQKFHD 220 (352)
Q Consensus 155 fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i-----S~~PlSIiiVG---VG~~~f~~m~~LD~ 220 (352)
-+-|-+.|+++|++. .|-|.||=|-|--+| .+.....+ -+-|==|++|| ||+..-+-+.+|..
T Consensus 451 ~a~vak~AI~~a~~~--gfDVvLiDTAGR~~~-~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~ 521 (587)
T KOG0781|consen 451 AAGVAKEAIQEARNQ--GFDVVLIDTAGRMHN-NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNR 521 (587)
T ss_pred hHHHHHHHHHHHHhc--CCCEEEEeccccccC-ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHH
Confidence 467888899999875 489999999999888 34444444 77899999999 89988888887764
No 176
>PLN02436 cellulose synthase A
Probab=28.42 E-value=36 Score=38.89 Aligned_cols=42 Identities=31% Similarity=0.730 Sum_probs=30.4
Q ss_pred cCCcccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccC
Q 018644 304 EAQRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~---~~-~~~----pCGH~~C~~C~~~~-----~~CP~CR~~i~ 345 (352)
....|.||-|.. .+ -+| -||--+|+.|..-- +.||.|++.-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999863 22 123 56777999999744 67999998765
No 177
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=27.95 E-value=43 Score=39.15 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=51.3
Q ss_pred ccccccCCC-ccceeeecCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhCCceeeecCCC-----cHHHHHHHHHHHHH
Q 018644 95 KELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFGPTS-----YAPMVEAAVDIVEE 168 (352)
Q Consensus 95 ~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~-----fapiI~~a~~~a~~ 168 (352)
..++..-.. .+|+|||-... +-....++.+-..|-+.+++||+.||-. |.-.|-+++.-.-+
T Consensus 2137 t~l~~la~rle~PaYglQ~T~------------~vP~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lq 2204 (2376)
T KOG1202|consen 2137 TALESLASRLEIPAYGLQCTE------------AVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQ 2204 (2376)
T ss_pred HHHHHHHhhcCCcchhhhccc------------cCCcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHH
Confidence 334444456 79999995521 1123578999999999999999999954 44556555443322
Q ss_pred cCCceEEEEEEeCCccCC
Q 018644 169 SGGLHHVLVIITSGQVAT 186 (352)
Q Consensus 169 ~~~~Y~VLlIitDG~i~d 186 (352)
. ++.-.-||+-||.-+-
T Consensus 2205 e-~~~~~~lillDGspty 2221 (2376)
T KOG1202|consen 2205 E-QQSPAPLILLDGSPTY 2221 (2376)
T ss_pred h-hcCCCcEEEecCchHH
Confidence 2 1233448999997665
No 178
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=27.82 E-value=14 Score=37.63 Aligned_cols=42 Identities=29% Similarity=0.725 Sum_probs=30.9
Q ss_pred cCCcccCcccC--CCC---eeecCCCCCchhhhhcC------CCCCCCccccC
Q 018644 304 EAQRCCICCED--EKD---TAFECGHMSCIKCALRM------PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~--~~~---~~~pCGH~~C~~C~~~~------~~CP~CR~~i~ 345 (352)
-...|-.|-+. .++ -++||.|.|=..|+... +.||.||+-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 45789999873 333 23599999999998843 68999995443
No 179
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=27.38 E-value=40 Score=23.84 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=20.0
Q ss_pred CcccCcccCCCCee-----ecCCCCCchhhhhcC
Q 018644 306 QRCCICCEDEKDTA-----FECGHMSCIKCALRM 334 (352)
Q Consensus 306 ~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~~ 334 (352)
..|.+|-..+.-.. ..||+.+|..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 46777765433321 289999999998864
No 180
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.75 E-value=29 Score=34.87 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=11.5
Q ss_pred ccCCcccCcccCCCC
Q 018644 303 AEAQRCCICCEDEKD 317 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~ 317 (352)
.....||||-++...
T Consensus 13 dl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG 27 (475)
T ss_pred ccccccccccCcccc
Confidence 345789999988665
No 181
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.51 E-value=26 Score=33.72 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=32.4
Q ss_pred cccccCCcccCcccCCCCee---e--cCCCC-----CchhhhhcC------------CCCCCCccccC
Q 018644 300 AEVAEAQRCCICCEDEKDTA---F--ECGHM-----SCIKCALRM------------PQCPFCREEIT 345 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~---~--pCGH~-----~C~~C~~~~------------~~CP~CR~~i~ 345 (352)
...+.+..|-||+....|-. + ||... +=..|+.++ -.||.|+..-.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34567789999998766632 3 88754 566788765 24999998644
No 182
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=25.95 E-value=4.1e+02 Score=24.12 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=42.3
Q ss_pred Cceeeec--CCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecCCCcchhcccc
Q 018644 145 PNVQYFG--PTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGDGPWESIQKFH 219 (352)
Q Consensus 145 ~~v~l~g--Pt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~~~f~~m~~LD 219 (352)
..|.|+| |+.-.+.+..+++.+++.+ .. +.|.|.|-.....+...+.+.. +.+|.|++=..+-+..+++.
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~~~~~~~~~ll~~--~d~v~isl~~~~~~~~~~~~ 138 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLGGCTEAADELLEY--TDLVLLDIKHFNPEKYKKLT 138 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCCccHHHHHHHHHh--CCEEEEeCCCCCHHHHHHHH
Confidence 3688886 8888888888888888753 22 3578999654311333344432 35677776544434444443
No 183
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.81 E-value=20 Score=39.71 Aligned_cols=43 Identities=23% Similarity=0.517 Sum_probs=31.5
Q ss_pred CcccCcccCCC-Ceee-cCCCCCchhhhh-cCCCCCCCccccCCee
Q 018644 306 QRCCICCEDEK-DTAF-ECGHMSCIKCAL-RMPQCPFCREEITTRR 348 (352)
Q Consensus 306 ~~C~IC~~~~~-~~~~-pCGH~~C~~C~~-~~~~CP~CR~~i~~~i 348 (352)
..|..|-...- .+|. .|||.+=..|.. +...||-|+......+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhhhH
Confidence 48999986433 3443 999998777777 4578999998665543
No 184
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.48 E-value=28 Score=20.89 Aligned_cols=6 Identities=50% Similarity=1.464 Sum_probs=2.8
Q ss_pred CCCCcc
Q 018644 337 CPFCRE 342 (352)
Q Consensus 337 CP~CR~ 342 (352)
||.|-.
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 554443
No 185
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.27 E-value=1.8e+02 Score=27.77 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=29.2
Q ss_pred eEEEEEEeCCccCCccHHHHHHHhcCCcE--EEEEee-cCCCcchhc
Q 018644 173 HHVLVIITSGQVATGSQQEQETISSYPLS--IVLVGV-GDGPWESIQ 216 (352)
Q Consensus 173 Y~VLlIitDG~i~d~~~~~~~~iS~~PlS--IiiVGV-G~~~f~~m~ 216 (352)
+..-+++|+.....-.+.+-+++.++++. =|||.| ||.+|=.-+
T Consensus 62 ~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~ 108 (247)
T COG1212 62 FGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPE 108 (247)
T ss_pred hCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHH
Confidence 45668999998765445555666777665 566666 788875433
No 186
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=24.79 E-value=16 Score=35.63 Aligned_cols=41 Identities=29% Similarity=0.711 Sum_probs=28.6
Q ss_pred cCCcccCccc-CCCCeee-----cCCCCCchhhhhcC-----------CCCCCCcccc
Q 018644 304 EAQRCCICCE-DEKDTAF-----ECGHMSCIKCALRM-----------PQCPFCREEI 344 (352)
Q Consensus 304 ~~~~C~IC~~-~~~~~~~-----pCGH~~C~~C~~~~-----------~~CP~CR~~i 344 (352)
+...|.+|.- .+....- .||+.||..|..+. ..|+.|=...
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 4578999998 3333322 89999999998862 2477775444
No 188
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=24.74 E-value=20 Score=34.78 Aligned_cols=39 Identities=33% Similarity=0.740 Sum_probs=27.3
Q ss_pred ccCcccCC----CCee-ecCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 308 CCICCEDE----KDTA-FECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 308 C~IC~~~~----~~~~-~pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
||+|.+.. .++. ++|||..=..|...+ -.||+|-. +...
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 99999843 2333 399999656666655 56999988 5443
No 189
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.37 E-value=49 Score=27.39 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=13.3
Q ss_pred CchhhhhcC-------------CCCCCCcc
Q 018644 326 SCIKCALRM-------------PQCPFCRE 342 (352)
Q Consensus 326 ~C~~C~~~~-------------~~CP~CR~ 342 (352)
||..|+.+- +.||.||.
T Consensus 40 fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 40 FCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred ehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 899996642 67999987
No 190
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.34 E-value=29 Score=34.75 Aligned_cols=19 Identities=32% Similarity=0.919 Sum_probs=14.5
Q ss_pred CCCchhhhhcC----CCCCCCcc
Q 018644 324 HMSCIKCALRM----PQCPFCRE 342 (352)
Q Consensus 324 H~~C~~C~~~~----~~CP~CR~ 342 (352)
|..|..|.-+. |+||-||.
T Consensus 354 ~YRC~~CGF~a~~l~W~CPsC~~ 376 (389)
T COG2956 354 RYRCQNCGFTAHTLYWHCPSCRA 376 (389)
T ss_pred CceecccCCcceeeeeeCCCccc
Confidence 44688887654 89999996
No 191
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=24.29 E-value=35 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.713 Sum_probs=23.8
Q ss_pred cccCcccCCCCeeecCCCCCchhhhhcC
Q 018644 307 RCCICCEDEKDTAFECGHMSCIKCALRM 334 (352)
Q Consensus 307 ~C~IC~~~~~~~~~pCGH~~C~~C~~~~ 334 (352)
.|.||-....+...-.|+..|..|-..+
T Consensus 1 ~CiiC~~~~~~GI~I~~~fIC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHIYGKFICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEEECeEehHHHHHHh
Confidence 4889998888876688999999998876
No 192
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=1.4e+02 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCceeeec--CCCcHHHHHHHHHHHHHcCC--ceEEEEEEeCCccCC
Q 018644 144 VPNVQYFG--PTSYAPMVEAAVDIVEESGG--LHHVLVIITSGQVAT 186 (352)
Q Consensus 144 l~~v~l~g--Pt~fapiI~~a~~~a~~~~~--~Y~VLlIitDG~i~d 186 (352)
.++|.|-| ||.+-.-|+.|+..|.++-. .++= |+=|+|.|.|
T Consensus 6 YK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~~l~wfe-V~~~rg~v~~ 51 (71)
T COG3360 6 YKKIELVGTSPTSIDAAIANAIARAADTLDNLDWFE-VVETRGHVVD 51 (71)
T ss_pred EEEEEEEecCCccHHHHHHHHHHHHHhhhhcceEEE-EEeecccEee
Confidence 35577765 99999999999999988732 2333 5667887776
No 193
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=23.58 E-value=24 Score=28.72 Aligned_cols=36 Identities=22% Similarity=0.598 Sum_probs=27.1
Q ss_pred CCcccCcccCCCCeeecCCCCCchhhhhcCCCCCCCccc
Q 018644 305 AQRCCICCEDEKDTAFECGHMSCIKCALRMPQCPFCREE 343 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~pCGH~~C~~C~~~~~~CP~CR~~ 343 (352)
...|..|.+.... -=-|.+|..|+.....|+-|..+
T Consensus 55 p~kC~~C~qktVk---~AYh~iC~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVK---HAYHVICDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHH---HHHHHHHHHHHHhhccCcccCCC
Confidence 4468888865433 22377899999999999999875
No 194
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.10 E-value=39 Score=26.40 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=18.4
Q ss_pred CCCCchhhhhcC--CCCCCCccccCC
Q 018644 323 GHMSCIKCALRM--PQCPFCREEITT 346 (352)
Q Consensus 323 GH~~C~~C~~~~--~~CP~CR~~i~~ 346 (352)
-|.||..|+... ..||.|-..+..
T Consensus 28 EcTFCadCae~~l~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLHGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhcCcCCCCCchhhc
Confidence 356999999954 679999876654
No 195
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.06 E-value=1.7e+02 Score=27.58 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH-hcCCcEEEEEeecCCCcchhccccC-CCC----Ccc--
Q 018644 155 YAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI-SSYPLSIVLVGVGDGPWESIQKFHD-KIP----ALQ-- 226 (352)
Q Consensus 155 fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i-S~~PlSIiiVGVG~~~f~~m~~LD~-~~~----~r~-- 226 (352)
|+.+++-+.+.+++. .|.++|+-|++.-.. . +..+.+ ++-.=.||+.+.... ++.+..+-. +.| .|.
T Consensus 16 f~~ii~gIe~~a~~~--Gy~l~l~~t~~~~~~-e-~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~~iPvV~~~~~~~ 90 (279)
T PF00532_consen 16 FAEIIRGIEQEAREH--GYQLLLCNTGDDEEK-E-EYIELLLQRRVDGIILASSEND-DEELRRLIKSGIPVVLIDRYID 90 (279)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEEETTTHHH-H-HHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHTTSEEEEESS-SC
T ss_pred HHHHHHHHHHHHHHc--CCEEEEecCCCchHH-H-HHHHHHHhcCCCEEEEecccCC-hHHHHHHHHcCCCEEEEEeccC
Confidence 788888888888875 499988888876433 2 444445 777888888866554 555554432 232 121
Q ss_pred ee-eEeeecchhh
Q 018644 227 FD-NFHFVNFTAI 238 (352)
Q Consensus 227 rD-nvqFV~f~~~ 238 (352)
.+ .+.+|-.+++
T Consensus 91 ~~~~~~~V~~D~~ 103 (279)
T PF00532_consen 91 NPEGVPSVYIDNY 103 (279)
T ss_dssp TTCTSCEEEEEHH
T ss_pred CcccCCEEEEcch
Confidence 22 4566666655
No 196
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.33 E-value=38 Score=33.62 Aligned_cols=42 Identities=26% Similarity=0.493 Sum_probs=30.2
Q ss_pred cccCCcccCcccCCCC----eeecCCCCCchhhhhcC-------CCCCCCccc
Q 018644 302 VAEAQRCCICCEDEKD----TAFECGHMSCIKCALRM-------PQCPFCREE 343 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~----~~~pCGH~~C~~C~~~~-------~~CP~CR~~ 343 (352)
...-..|||=.+..++ +.+.|||..-.+-+.++ -+||.|...
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 3455789986654333 34499999988888877 369999764
No 197
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=22.21 E-value=1.5e+02 Score=24.44 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHH-HhhCCceeeec--CCC--cHHHHHHHHHHHHHcCCceEEEEEEeCCccCC
Q 018644 134 EHVLECY-RKNVPNVQYFG--PTS--YAPMVEAAVDIVEESGGLHHVLVIITSGQVAT 186 (352)
Q Consensus 134 ~gvl~~Y-~~~l~~v~l~g--Pt~--fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d 186 (352)
+.+++.+ ......|.|.| |+. ..|.+.+.++.+++... ....+.|.|...+
T Consensus 42 ~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~--~~~~~~tng~~~~ 97 (139)
T PF13353_consen 42 EEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP--KKIIILTNGYTLD 97 (139)
T ss_dssp HHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT---SEEEEEETT--HH
T ss_pred hhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC--CCeEEEECCCchh
Confidence 4444444 34457789998 888 67888888888887643 2346899998766
No 198
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.00 E-value=52 Score=31.72 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=31.7
Q ss_pred cCCcccCcccC----CCCeee-cCCCCCchhhhhcC--CCCCCCccccCCe
Q 018644 304 EAQRCCICCED----EKDTAF-ECGHMSCIKCALRM--PQCPFCREEITTR 347 (352)
Q Consensus 304 ~~~~C~IC~~~----~~~~~~-pCGH~~C~~C~~~~--~~CP~CR~~i~~~ 347 (352)
....|||=--. .+-.++ +|||.|-..=+..+ ..|++|.+..+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQED 160 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCccccc
Confidence 45788886532 222445 99999988777776 6799999987653
No 199
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.98 E-value=28 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=10.5
Q ss_pred cCCCCCCCccccCCee
Q 018644 333 RMPQCPFCREEITTRR 348 (352)
Q Consensus 333 ~~~~CP~CR~~i~~~i 348 (352)
....||+|..+-..+.
T Consensus 16 ~~~~CP~Cg~~~~~F~ 31 (33)
T cd00350 16 APWVCPVCGAPKDKFE 31 (33)
T ss_pred CCCcCcCCCCcHHHcE
Confidence 3468999987654443
No 200
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.77 E-value=72 Score=36.62 Aligned_cols=42 Identities=29% Similarity=0.676 Sum_probs=29.6
Q ss_pred cCCcccCcccCC---CC-eee----cCCCCCchhhhhcC-----CCCCCCccccC
Q 018644 304 EAQRCCICCEDE---KD-TAF----ECGHMSCIKCALRM-----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~---~~-~~~----pCGH~~C~~C~~~~-----~~CP~CR~~i~ 345 (352)
+...|.||-|.. .+ -.| -||--+|+.|..-- +.||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345899999852 11 123 67777999998632 67999998765
No 201
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.61 E-value=46 Score=28.89 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=17.6
Q ss_pred ccCcccCCCCeee-cCCCCCchh
Q 018644 308 CCICCEDEKDTAF-ECGHMSCIK 329 (352)
Q Consensus 308 C~IC~~~~~~~~~-pCGH~~C~~ 329 (352)
=-||.+..+.+.- .|||.||..
T Consensus 60 lfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecccccEEEEeccccccCh
Confidence 3588888888776 999999864
No 202
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.55 E-value=55 Score=33.49 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCcccCcccCCCCee-e--cCCCCCchhhhhcC
Q 018644 304 EAQRCCICCEDEKDTA-F--ECGHMSCIKCALRM 334 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-~--pCGH~~C~~C~~~~ 334 (352)
...+|+||+-...... + -|.-.+|.+|...+
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 3479999997655532 3 67777999997743
No 203
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=3.8e+02 Score=22.01 Aligned_cols=62 Identities=21% Similarity=0.419 Sum_probs=43.6
Q ss_pred cCCCcHHHHHHHHH-HHHHcCCceEEEEEEeCCccCCccHHHHHHHhcCCcEEEEEeecCCCcchhccccCCCCCcceee
Q 018644 151 GPTSYAPMVEAAVD-IVEESGGLHHVLVIITSGQVATGSQQEQETISSYPLSIVLVGVGDGPWESIQKFHDKIPALQFDN 229 (352)
Q Consensus 151 gPt~fapiI~~a~~-~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~iS~~PlSIiiVGVG~~~f~~m~~LD~~~~~r~rDn 229 (352)
+|+.....|.+... +++.. .+ +++-+|.|--- |||=|-|.||+-+++.|-.+.. -|.
T Consensus 34 ~~~tvgdll~yi~~~~ie~r-~~----lFi~~gsvrpG---------------ii~lINd~DWEllekedy~led--gD~ 91 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETR-DS----LFIHHGSVRPG---------------IIVLINDMDWELLEKEDYPLED--GDH 91 (101)
T ss_pred CcccHHHHHHHHHHHHhcCC-cc----eEeeCCcCcCc---------------EEEEEeccchhhhcccccCccc--CCE
Confidence 58888888888766 44443 33 55567766542 6777889999999999965543 488
Q ss_pred Eeeec
Q 018644 230 FHFVN 234 (352)
Q Consensus 230 vqFV~ 234 (352)
+-|+.
T Consensus 92 ivfiS 96 (101)
T KOG4146|consen 92 IVFIS 96 (101)
T ss_pred EEEEE
Confidence 88874
No 204
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=21.20 E-value=37 Score=37.80 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=31.3
Q ss_pred ccCCcccCcccCCCC--eee---cCCCCCchhhhhcC-----------CCCCCCcccc
Q 018644 303 AEAQRCCICCEDEKD--TAF---ECGHMSCIKCALRM-----------PQCPFCREEI 344 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~--~~~---pCGH~~C~~C~~~~-----------~~CP~CR~~i 344 (352)
.+..+|.||++.-.. .++ .|-|+|=..|+.+| |.||.|+..-
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 457899999996444 455 77788877788765 7899999543
No 205
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.18 E-value=40 Score=22.16 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=9.7
Q ss_pred cCCCCCCCccccCC
Q 018644 333 RMPQCPFCREEITT 346 (352)
Q Consensus 333 ~~~~CP~CR~~i~~ 346 (352)
....||.|...+.+
T Consensus 25 ~~~~CP~Cg~~~~r 38 (41)
T smart00834 25 PLATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCCccee
Confidence 34679999986543
Done!