Query 018644
Match_columns 352
No_of_seqs 300 out of 1469
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 6.9E-13 2.3E-17 100.3 5.8 51 302-352 12-64 (68)
2 2yho_A E3 ubiquitin-protein li 99.2 2.6E-12 8.7E-17 99.8 2.3 51 301-351 14-66 (79)
3 4ic3_A E3 ubiquitin-protein li 99.2 2.9E-12 1E-16 98.0 2.6 51 301-351 20-72 (74)
4 2ecg_A Baculoviral IAP repeat- 99.2 2.3E-12 8E-17 98.6 2.0 51 301-351 21-73 (75)
5 2vje_B MDM4 protein; proto-onc 99.1 6.4E-12 2.2E-16 93.3 0.0 49 303-351 5-61 (63)
6 2vje_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 92.0 -0.3 49 303-351 6-62 (64)
7 1e4u_A Transcriptional repress 99.0 2E-10 6.7E-15 89.1 3.7 54 298-351 4-67 (78)
8 2d8t_A Dactylidin, ring finger 98.9 4.9E-10 1.7E-14 84.3 4.0 45 302-346 12-61 (71)
9 2ysl_A Tripartite motif-contai 98.9 7.9E-10 2.7E-14 83.1 4.7 49 299-347 14-70 (73)
10 3t6p_A Baculoviral IAP repeat- 98.9 3.6E-10 1.2E-14 110.4 3.1 52 300-351 290-343 (345)
11 2ecn_A Ring finger protein 141 98.9 3.7E-10 1.2E-14 84.5 2.4 52 300-351 10-65 (70)
12 2ea6_A Ring finger protein 4; 98.9 4.1E-10 1.4E-14 83.5 1.9 48 299-346 9-68 (69)
13 2djb_A Polycomb group ring fin 98.9 1.1E-09 3.7E-14 82.6 3.8 51 297-347 7-63 (72)
14 2csy_A Zinc finger protein 183 98.9 1.3E-09 4.4E-14 84.0 4.0 47 300-346 10-61 (81)
15 2ecw_A Tripartite motif-contai 98.9 2.6E-09 8.8E-14 82.1 5.5 48 299-346 13-71 (85)
16 2egp_A Tripartite motif-contai 98.8 1.7E-09 5.9E-14 82.4 4.1 48 299-346 6-65 (79)
17 2yur_A Retinoblastoma-binding 98.8 1.8E-09 6.2E-14 82.0 3.7 49 298-346 8-64 (74)
18 2ecv_A Tripartite motif-contai 98.8 3.8E-09 1.3E-13 81.1 5.5 48 299-346 13-71 (85)
19 2ct2_A Tripartite motif protei 98.8 2E-09 6.9E-14 83.6 3.8 48 299-346 9-68 (88)
20 4ayc_A E3 ubiquitin-protein li 98.8 1.1E-09 3.6E-14 93.2 1.8 46 302-347 50-100 (138)
21 1bor_A Transcription factor PM 98.8 3.6E-09 1.2E-13 76.3 3.5 44 303-346 4-49 (56)
22 1chc_A Equine herpes virus-1 r 98.8 3.1E-09 1.1E-13 78.8 3.2 49 303-351 3-57 (68)
23 2ecy_A TNF receptor-associated 98.8 2.9E-09 9.8E-14 78.9 2.8 47 301-347 11-63 (66)
24 3ng2_A RNF4, snurf, ring finge 98.8 1.3E-09 4.5E-14 81.3 0.8 45 302-346 7-63 (71)
25 3ztg_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 83.6 2.7 47 299-345 7-61 (92)
26 3l11_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 86.4 2.5 47 300-346 10-62 (115)
27 2xeu_A Ring finger protein 4; 98.7 2.8E-09 9.4E-14 77.7 1.0 48 304-351 2-63 (64)
28 1t1h_A Gspef-atpub14, armadill 98.7 5.5E-09 1.9E-13 79.7 2.5 46 301-346 4-55 (78)
29 1iym_A EL5; ring-H2 finger, ub 98.7 1.1E-08 3.8E-13 72.6 3.7 43 303-345 3-54 (55)
30 2kiz_A E3 ubiquitin-protein li 98.7 1.2E-08 4.1E-13 75.9 3.9 49 301-349 10-66 (69)
31 2ecm_A Ring finger and CHY zin 98.7 8.3E-09 2.8E-13 73.2 2.9 42 304-345 4-54 (55)
32 2ect_A Ring finger protein 126 98.7 1.1E-08 3.8E-13 77.9 3.8 49 299-347 9-65 (78)
33 2ecj_A Tripartite motif-contai 98.7 1.4E-08 4.7E-13 72.7 3.9 42 299-340 9-58 (58)
34 3fl2_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 87.7 1.2 47 300-346 47-99 (124)
35 2ysj_A Tripartite motif-contai 98.6 2E-08 6.8E-13 73.5 4.1 42 299-340 14-63 (63)
36 2ep4_A Ring finger protein 24; 98.6 1.2E-08 4.1E-13 77.0 2.9 51 299-349 9-67 (74)
37 1g25_A CDK-activating kinase a 98.6 6.8E-09 2.3E-13 76.6 1.2 43 304-346 2-55 (65)
38 1jm7_A BRCA1, breast cancer ty 98.6 1.1E-08 3.9E-13 82.9 1.8 46 301-346 17-70 (112)
39 2y43_A E3 ubiquitin-protein li 98.6 8.2E-09 2.8E-13 82.4 0.8 48 299-346 16-69 (99)
40 3lrq_A E3 ubiquitin-protein li 98.6 9.7E-09 3.3E-13 82.6 1.0 47 300-346 17-70 (100)
41 2ckl_A Polycomb group ring fin 98.5 2E-08 6.7E-13 81.5 2.1 47 300-346 10-62 (108)
42 1z6u_A NP95-like ring finger p 98.5 1.3E-08 4.6E-13 87.9 1.2 48 300-347 73-126 (150)
43 2l0b_A E3 ubiquitin-protein li 98.5 1.9E-08 6.4E-13 79.5 1.9 46 302-347 37-90 (91)
44 2ckl_B Ubiquitin ligase protei 98.5 2.3E-08 7.9E-13 87.1 1.8 47 300-346 49-102 (165)
45 1x4j_A Ring finger protein 38; 98.5 2.3E-08 7.9E-13 75.7 1.4 44 303-346 21-72 (75)
46 1jm7_B BARD1, BRCA1-associated 98.5 3.8E-08 1.3E-12 81.1 2.9 48 299-346 16-67 (117)
47 2y1n_A E3 ubiquitin-protein li 98.5 4.2E-08 1.4E-12 97.0 3.6 46 305-350 332-383 (389)
48 2kr4_A Ubiquitin conjugation f 98.5 6.9E-08 2.4E-12 75.5 3.3 48 300-347 9-61 (85)
49 3hct_A TNF receptor-associated 98.5 4.4E-08 1.5E-12 80.9 2.1 47 300-346 13-65 (118)
50 1rmd_A RAG1; V(D)J recombinati 98.4 4E-08 1.4E-12 80.6 1.4 47 300-346 18-70 (116)
51 1wgm_A Ubiquitin conjugation f 98.4 1.3E-07 4.4E-12 76.1 4.3 48 300-347 17-70 (98)
52 2kre_A Ubiquitin conjugation f 98.4 6.7E-08 2.3E-12 78.1 2.3 46 301-346 25-75 (100)
53 3knv_A TNF receptor-associated 98.4 2.5E-08 8.7E-13 85.4 -0.3 46 300-345 26-77 (141)
54 2c2l_A CHIP, carboxy terminus 98.3 1.9E-07 6.3E-12 86.7 3.5 44 303-346 206-255 (281)
55 1v87_A Deltex protein 2; ring- 98.3 1.1E-07 3.9E-12 77.4 1.1 43 305-347 25-95 (114)
56 4ap4_A E3 ubiquitin ligase RNF 98.3 1.3E-07 4.5E-12 78.1 0.5 45 303-347 5-61 (133)
57 3hcs_A TNF receptor-associated 98.2 4.5E-07 1.5E-11 79.1 2.1 46 301-346 14-65 (170)
58 2yu4_A E3 SUMO-protein ligase 98.2 6.3E-07 2.2E-11 71.2 2.3 42 302-343 4-59 (94)
59 2ecl_A Ring-box protein 2; RNF 98.2 1.1E-06 3.6E-11 67.9 3.5 43 304-346 14-76 (81)
60 2f42_A STIP1 homology and U-bo 98.1 8.3E-07 2.8E-11 79.1 2.1 46 302-347 103-154 (179)
61 4ap4_A E3 ubiquitin ligase RNF 98.1 5.3E-07 1.8E-11 74.5 0.4 49 303-351 70-132 (133)
62 4hqf_A Thrombospondin-related 98.0 3.9E-05 1.3E-09 71.5 12.5 148 47-220 20-179 (281)
63 3htk_C E3 SUMO-protein ligase 97.9 6E-06 2.1E-10 77.5 3.6 46 301-346 177-232 (267)
64 4hqo_A Sporozoite surface prot 97.9 4.6E-05 1.6E-09 70.8 9.2 148 47-220 17-176 (266)
65 3dpl_R Ring-box protein 1; ubi 97.8 5.8E-06 2E-10 67.4 2.5 42 304-345 36-100 (106)
66 3ibs_A Conserved hypothetical 97.7 8.4E-05 2.9E-09 65.8 8.7 140 47-210 10-150 (218)
67 1wim_A KIAA0161 protein; ring 97.7 5.7E-06 2E-10 65.3 0.3 40 304-343 4-61 (94)
68 1atz_A VON willebrand factor; 97.6 0.0006 2E-08 59.2 12.4 143 48-220 5-157 (189)
69 3n2n_F Anthrax toxin receptor 97.6 0.00027 9.2E-09 60.7 10.0 142 48-220 7-158 (185)
70 2d8s_A Cellular modulator of i 97.6 4.8E-05 1.6E-09 58.8 4.6 48 302-349 12-73 (80)
71 4a0k_B E3 ubiquitin-protein li 97.6 8.4E-06 2.9E-10 67.8 0.2 42 304-345 47-111 (117)
72 1shu_X Anthrax toxin receptor 97.6 0.00013 4.5E-09 62.5 7.5 143 48-220 6-155 (182)
73 2xgg_A Microneme protein 2; A/ 97.6 0.00043 1.5E-08 59.8 10.8 133 48-210 17-162 (178)
74 4fx5_A VON willebrand factor t 97.4 0.00064 2.2E-08 68.5 10.6 151 47-220 76-231 (464)
75 1n3y_A Integrin alpha-X; alpha 97.4 0.00014 4.6E-09 63.4 4.9 142 48-220 9-166 (198)
76 1q0p_A Complement factor B; VO 97.4 0.00045 1.5E-08 61.0 7.9 151 47-220 14-191 (223)
77 1ijb_A VON willebrand factor; 97.3 0.0011 3.9E-08 58.4 10.4 141 48-219 13-167 (202)
78 2b2x_A Integrin alpha-1; compu 97.3 0.0014 4.8E-08 58.5 10.8 129 48-210 22-164 (223)
79 1pt6_A Integrin alpha-1; cell 97.2 0.0026 9E-08 56.2 11.4 129 48-210 7-149 (213)
80 2odp_A Complement C2; C3/C5 co 97.1 0.00077 2.6E-08 67.6 7.8 146 46-220 7-185 (509)
81 4b4t_W RPN10, 26S proteasome r 97.1 0.0014 4.9E-08 61.6 9.1 158 51-235 6-174 (268)
82 2x5n_A SPRPN10, 26S proteasome 97.1 0.0033 1.1E-07 55.9 11.0 158 50-237 4-172 (192)
83 2bay_A PRE-mRNA splicing facto 97.1 0.00017 5.8E-09 52.8 1.8 43 305-347 3-51 (61)
84 1v7p_C Integrin alpha-2; snake 97.1 0.006 2.1E-07 53.3 12.0 128 48-209 6-147 (200)
85 1mf7_A Integrin alpha M; cell 97.0 0.00057 1.9E-08 59.5 5.1 141 48-220 5-162 (194)
86 2x31_A Magnesium-chelatase 60 97.0 0.0002 6.9E-09 62.0 1.4 141 48-219 5-161 (189)
87 3vk6_A E3 ubiquitin-protein li 96.8 0.0006 2E-08 54.8 2.5 41 307-347 3-50 (101)
88 1rrk_A Complement factor B; BB 96.7 0.0026 8.8E-08 63.3 7.2 147 49-220 2-177 (497)
89 3zqk_A VON willebrand factor; 96.6 0.002 7E-08 56.6 5.0 137 48-220 21-169 (199)
90 3hrz_D Complement factor B; se 96.0 0.011 3.8E-07 61.8 7.8 148 47-220 242-419 (741)
91 1mjn_A Integrin alpha-L; rossm 95.5 0.051 1.8E-06 46.6 8.7 138 48-219 2-151 (179)
92 3k1l_B Fancl; UBC, ring, RWD, 95.4 0.0049 1.7E-07 60.0 1.9 45 303-347 306-374 (381)
93 3k6s_A Integrin alpha-X; cell 95.3 0.018 6.1E-07 63.8 6.4 139 48-220 130-287 (1095)
94 2ct0_A Non-SMC element 1 homol 95.0 0.024 8.1E-07 43.0 4.2 45 303-347 13-65 (74)
95 2ko5_A Ring finger protein Z; 94.7 0.034 1.2E-06 44.1 4.5 51 300-350 23-77 (99)
96 1jey_A KU70; double-strand DNA 94.5 0.14 4.7E-06 53.2 10.1 147 50-213 37-212 (609)
97 1jey_B KU80; double-strand DNA 94.4 0.12 4E-06 53.1 9.2 142 49-210 8-170 (565)
98 1vyx_A ORF K3, K3RING; zinc-bi 94.1 0.022 7.7E-07 41.2 2.2 44 303-346 4-59 (60)
99 1yvr_A RO autoantigen, 60-kDa 94.0 0.24 8.1E-06 50.4 10.3 135 47-213 367-507 (538)
100 2jun_A Midline-1; B-BOX, TRIM, 89.3 0.12 4.2E-06 40.4 1.5 30 304-333 2-35 (101)
101 2cs3_A Protein C14ORF4, MY039 85.2 0.39 1.3E-05 37.0 2.0 31 303-333 13-48 (93)
102 2nvo_A RO sixty-related protei 81.0 2.4 8.2E-05 43.1 6.6 137 47-213 361-503 (535)
103 3rag_A Uncharacterized protein 66.7 7.4 0.00025 35.7 5.4 38 172-211 9-50 (242)
104 3nw0_A Non-structural maintena 64.9 3.1 0.00011 38.0 2.5 43 304-346 179-229 (238)
105 2a20_A Regulating synaptic mem 63.8 0.47 1.6E-05 34.3 -2.5 38 303-343 7-60 (62)
106 3i2d_A E3 SUMO-protein ligase 63.4 3.4 0.00012 40.3 2.5 44 303-346 247-300 (371)
107 4fo9_A E3 SUMO-protein ligase 61.3 4 0.00014 39.7 2.6 45 302-346 212-266 (360)
108 2fiy_A Protein FDHE homolog; F 55.7 3.1 0.00011 39.6 0.7 41 303-343 180-231 (309)
109 2ww8_A RRGA, cell WALL surface 52.7 23 0.00079 38.3 7.0 40 147-186 351-392 (893)
110 1weo_A Cellulose synthase, cat 52.0 15 0.00051 28.7 3.9 43 304-346 15-70 (93)
111 1z2q_A LM5-1; membrane protein 50.3 13 0.00044 28.1 3.4 30 304-333 20-54 (84)
112 1z60_A TFIIH basal transcripti 48.0 12 0.00042 26.8 2.7 35 306-340 16-58 (59)
113 2zet_C Melanophilin; complex, 46.4 3.5 0.00012 35.2 -0.5 40 304-343 67-117 (153)
114 1wfk_A Zinc finger, FYVE domai 42.2 9.7 0.00033 29.3 1.5 31 303-333 7-42 (88)
115 1joc_A EEA1, early endosomal a 41.0 11 0.00036 30.9 1.7 31 304-334 68-103 (125)
116 3zyq_A Hepatocyte growth facto 40.6 30 0.001 31.0 4.7 29 305-333 164-197 (226)
117 1zbd_B Rabphilin-3A; G protein 39.4 3.4 0.00012 34.5 -1.6 40 304-343 54-107 (134)
118 2yw8_A RUN and FYVE domain-con 37.9 14 0.00046 27.9 1.7 30 304-333 18-52 (82)
119 3t7l_A Zinc finger FYVE domain 37.5 17 0.0006 27.8 2.3 31 303-333 18-53 (90)
120 1vfy_A Phosphatidylinositol-3- 36.1 14 0.00049 27.1 1.6 28 306-333 12-44 (73)
121 1x4u_A Zinc finger, FYVE domai 35.1 14 0.00049 27.8 1.4 30 304-333 13-47 (84)
122 1wil_A KIAA1045 protein; ring 34.4 29 0.00098 26.8 3.0 32 302-333 12-46 (89)
123 2iue_A Pactolus I-domain; memb 33.6 44 0.0015 29.8 4.6 108 48-186 3-118 (212)
124 3mpx_A FYVE, rhogef and PH dom 33.3 12 0.00042 36.1 1.0 41 304-344 374-430 (434)
125 1dvp_A HRS, hepatocyte growth 30.8 27 0.00092 30.9 2.7 29 305-333 161-194 (220)
126 1dl6_A Transcription factor II 30.4 33 0.0011 24.2 2.6 36 297-334 3-40 (58)
127 2jne_A Hypothetical protein YF 29.5 12 0.00042 29.6 0.2 37 306-345 33-72 (101)
128 1y02_A CARP2, FYVE-ring finger 29.3 18 0.00063 29.5 1.2 38 304-341 18-64 (120)
129 2lze_A A primordial catalytic 29.1 50 0.0017 25.4 3.6 11 304-314 16-26 (87)
130 2pv0_B DNA (cytosine-5)-methyl 27.3 26 0.00089 34.3 2.1 40 304-344 92-149 (386)
131 2gmg_A Hypothetical protein PF 25.3 25 0.00085 28.2 1.3 25 321-346 72-96 (105)
132 2cup_A Skeletal muscle LIM-pro 25.2 38 0.0013 25.5 2.4 42 304-345 32-77 (101)
133 2d8v_A Zinc finger FYVE domain 25.1 23 0.0008 26.0 1.0 34 301-334 4-38 (67)
134 2lri_C Autoimmune regulator; Z 24.0 1.1E+02 0.0037 22.0 4.5 40 304-344 11-60 (66)
135 1wfp_A Zinc finger (AN1-like) 23.5 68 0.0023 24.0 3.3 27 303-329 23-51 (74)
136 2k16_A Transcription initiatio 20.5 53 0.0018 23.8 2.3 45 303-347 16-72 (75)
137 3a1b_A DNA (cytosine-5)-methyl 20.2 41 0.0014 28.8 1.7 39 305-344 79-135 (159)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6.9e-13 Score=100.26 Aligned_cols=51 Identities=22% Similarity=0.580 Sum_probs=47.5
Q ss_pred cccCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecCC
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVYP 352 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if~ 352 (352)
..+..+|+||++.++++++ ||||. +|..|+.++..||+||++|..++++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 3457899999999999998 99999 999999999999999999999999984
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.22 E-value=2.6e-12 Score=99.84 Aligned_cols=51 Identities=39% Similarity=1.046 Sum_probs=47.4
Q ss_pred ccccCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if 351 (352)
.+.+...|+||++..+++++ ||||. +|..|+.+++.||+||.++...+++|
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 45567899999999999998 99999 99999999999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.22 E-value=2.9e-12 Score=97.96 Aligned_cols=51 Identities=31% Similarity=0.849 Sum_probs=47.6
Q ss_pred ccccCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if 351 (352)
.+.+...|+||++...++++ ||||. ||..|+.++..||+||+++...+++|
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 45667899999999999988 99999 99999999999999999999999987
No 4
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=98.60 Aligned_cols=51 Identities=31% Similarity=0.882 Sum_probs=47.3
Q ss_pred ccccCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if 351 (352)
.+.+..+|+||++...++++ ||||. ||..|+.++..||+||+++...+++|
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 44566899999999999998 99999 99999999999999999999999988
No 5
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=6.4e-12 Score=93.32 Aligned_cols=49 Identities=31% Similarity=0.842 Sum_probs=43.8
Q ss_pred ccCCcccCcccCCCCee-e--cCCCC-CchhhhhcCC----CCCCCccccCCeeecC
Q 018644 303 AEAQRCCICCEDEKDTA-F--ECGHM-SCIKCALRMP----QCPFCREEITTRRRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~-~--pCGH~-~C~~C~~~~~----~CP~CR~~i~~~i~if 351 (352)
+...+|+||++.+++++ + ||||. +|..|+.++. .||+||++|...+++|
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 45678999999999865 3 99999 9999999885 8999999999999987
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.06 E-value=1.3e-11 Score=91.96 Aligned_cols=49 Identities=31% Similarity=0.789 Sum_probs=43.8
Q ss_pred ccCCcccCcccCCCCeee---cCCCC-CchhhhhcCC----CCCCCccccCCeeecC
Q 018644 303 AEAQRCCICCEDEKDTAF---ECGHM-SCIKCALRMP----QCPFCREEITTRRRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~---pCGH~-~C~~C~~~~~----~CP~CR~~i~~~i~if 351 (352)
.++.+|+||+++++++++ ||||. +|..|+.++. .||+||++|...+++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 356799999999999774 99999 8999999874 5999999999999987
No 7
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=2e-10 Score=89.10 Aligned_cols=54 Identities=30% Similarity=0.647 Sum_probs=42.6
Q ss_pred cccccccCCcccCcccCCC--Ceee-c--CCCCCchhhhhcCC-----CCCCCccccCCeeecC
Q 018644 298 VSAEVAEAQRCCICCEDEK--DTAF-E--CGHMSCIKCALRMP-----QCPFCREEITTRRRVY 351 (352)
Q Consensus 298 ~~~~~~~~~~C~IC~~~~~--~~~~-p--CGH~~C~~C~~~~~-----~CP~CR~~i~~~i~if 351 (352)
....+.++..|+||++... ++.+ | |||.||..|+.+++ .||+||+++.....+|
T Consensus 4 ~~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 4 SPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CSCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3345678899999999773 4555 5 99999999998774 6999999998765444
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.9e-10 Score=84.32 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=39.7
Q ss_pred cccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..+...|+||++...+++. +|||.||..|+.++ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3567899999999999877 99999999999986 569999999875
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.9e-10 Score=83.12 Aligned_cols=49 Identities=27% Similarity=0.755 Sum_probs=41.9
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhcCC-------CCCCCccccCCe
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRMP-------QCPFCREEITTR 347 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~~-------~CP~CR~~i~~~ 347 (352)
...+.+...|+||++...+++. +|||.||..|+.++. .||+||+++...
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456778999999999999887 999999999998763 699999998753
No 10
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=3.6e-10 Score=110.42 Aligned_cols=52 Identities=33% Similarity=0.870 Sum_probs=48.5
Q ss_pred cccccCCcccCcccCCCCeee-cCCCC-CchhhhhcCCCCCCCccccCCeeecC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHM-SCIKCALRMPQCPFCREEITTRRRVY 351 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~-~C~~C~~~~~~CP~CR~~i~~~i~if 351 (352)
..+.+...|+||++...++++ ||||. ||..|+.++..||+||.+|..++++|
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 345678999999999999998 99999 99999999999999999999999998
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.7e-10 Score=84.52 Aligned_cols=52 Identities=29% Similarity=0.795 Sum_probs=43.3
Q ss_pred cccccCCcccCcccCCCCeeecCCCCCchhhhhcC----CCCCCCccccCCeeecC
Q 018644 300 AEVAEAQRCCICCEDEKDTAFECGHMSCIKCALRM----PQCPFCREEITTRRRVY 351 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~if 351 (352)
....+...|+||++...++.++|||.||..|+.++ ..||+||.++.....+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred hcCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 44567789999999999944499999999999977 56999999998766554
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.1e-10 Score=83.46 Aligned_cols=48 Identities=29% Similarity=0.712 Sum_probs=39.7
Q ss_pred ccccccCCcccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~-------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
.....+...|+||++...+. ++ +|||.||..|+.++ ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34556788999999976664 55 99999999999876 579999999875
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=82.62 Aligned_cols=51 Identities=27% Similarity=0.537 Sum_probs=42.8
Q ss_pred CcccccccCCcccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 297 PVSAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 297 ~~~~~~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.....+.+...|+||++...+++ + +|||.||..|+.++ ..||+||+++...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34456677899999999998865 4 99999999999876 6899999998765
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=84.02 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=40.7
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
....+...|+||++...++++ +|||.||..|+.++ ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 344567899999999999887 99999999999876 579999999874
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.85 E-value=2.6e-09 Score=82.06 Aligned_cols=48 Identities=29% Similarity=0.578 Sum_probs=41.3
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhc----------CCCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALR----------MPQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~----------~~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+++. +|||.||..|+.. ...||+||.++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456778999999999999877 9999999999986 3579999999875
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=82.36 Aligned_cols=48 Identities=31% Similarity=0.634 Sum_probs=41.2
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----------CCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----------PQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----------~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3456778999999999999876 99999999999864 469999999875
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=82.01 Aligned_cols=49 Identities=22% Similarity=0.582 Sum_probs=41.4
Q ss_pred cccccccCCcccCcccCCCCeee-c-CCCCCchhhhhcC------CCCCCCccccCC
Q 018644 298 VSAEVAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 298 ~~~~~~~~~~C~IC~~~~~~~~~-p-CGH~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
....+.+...|+||++...+++. + |||.||..|+.++ ..||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34556778999999999999876 8 9999999999876 379999998654
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.8e-09 Score=81.06 Aligned_cols=48 Identities=31% Similarity=0.634 Sum_probs=41.5
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhc----------CCCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALR----------MPQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~----------~~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+++. +|||.||..|+.. ...||+||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456778999999999999876 9999999999986 3579999999875
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=83.55 Aligned_cols=48 Identities=29% Similarity=0.756 Sum_probs=40.8
Q ss_pred ccccccCCcccCcccCCCC----eee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM-------PQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~----~~~-pCGH~~C~~C~~~~-------~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+ ++. +|||.||..|+.++ ..||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456778999999999888 766 99999999999876 479999998764
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.80 E-value=1.1e-09 Score=93.18 Aligned_cols=46 Identities=28% Similarity=0.736 Sum_probs=40.2
Q ss_pred cccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
+.++..|+||++...+++. ||||.||..|+..+ ..||+||.++...
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3456789999999999887 99999999999876 5699999999765
No 21
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=3.6e-09 Score=76.33 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=38.9
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC-CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-~~CP~CR~~i~~ 346 (352)
.+...|+||++...+++. +|||.||..|+... ..||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 467899999999999876 99999999999876 579999999875
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.76 E-value=3.1e-09 Score=78.82 Aligned_cols=49 Identities=33% Similarity=0.730 Sum_probs=41.0
Q ss_pred ccCCcccCcccCCCCe-ee-cCCCCCchhhhhcC----CCCCCCccccCCeeecC
Q 018644 303 AEAQRCCICCEDEKDT-AF-ECGHMSCIKCALRM----PQCPFCREEITTRRRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~-~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~if 351 (352)
++...|+||++...+. +. +|||.||..|+.++ ..||+||.++...++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 3567899999999884 55 99999999999875 67999999998876543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=78.86 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=40.3
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 347 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~~ 347 (352)
.+.+...|+||++...+++. +|||.||..|+.++ ..||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44667899999999999876 99999999999865 4699999998753
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.75 E-value=1.3e-09 Score=81.34 Aligned_cols=45 Identities=31% Similarity=0.762 Sum_probs=37.9
Q ss_pred cccCCcccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~-------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..+...|+||++...++ +. +|||.||..|+.++ ..||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 35678999999987664 55 99999999999876 689999999885
No 25
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.74 E-value=3e-09 Score=83.64 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=40.3
Q ss_pred ccccccCCcccCcccCCCCeee-c-CCCCCchhhhhcC------CCCCCCccccC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM------PQCPFCREEIT 345 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-p-CGH~~C~~C~~~~------~~CP~CR~~i~ 345 (352)
...+.+...|+||++...+++. + |||.||..|+..+ ..||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456778999999999999877 8 9999999999865 47999999973
No 26
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.70 E-value=4.1e-09 Score=86.44 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=40.2
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
....+...|+||++...+++. +|||.||..|+.++ ..||+||..+..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 344667899999999999876 99999999999887 369999998763
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.69 E-value=2.8e-09 Score=77.74 Aligned_cols=48 Identities=31% Similarity=0.777 Sum_probs=38.9
Q ss_pred cCCcccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCC--eeecC
Q 018644 304 EAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITT--RRRVY 351 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~-------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~--~i~if 351 (352)
+...|+||++...+. +. +|||.||..|+.++ ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 467899999976653 44 99999999999876 579999999985 45554
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.69 E-value=5.5e-09 Score=79.65 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=40.2
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
.+.+...|+||++...+++. +|||.||+.|+.++ ..||+||+++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34678999999999999887 99999999999865 469999999865
No 29
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.67 E-value=1.1e-08 Score=72.65 Aligned_cols=43 Identities=26% Similarity=0.728 Sum_probs=35.8
Q ss_pred ccCCcccCcccCCCC---ee-ec-CCCCCchhhhhcC----CCCCCCccccC
Q 018644 303 AEAQRCCICCEDEKD---TA-FE-CGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~---~~-~p-CGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
++..+|+||++...+ +. ++ |||.||..|+.++ ..||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 567899999998766 44 46 9999999999976 57999999864
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=75.93 Aligned_cols=49 Identities=27% Similarity=0.572 Sum_probs=39.0
Q ss_pred ccccCCcccCcccCCC---Ceee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018644 301 EVAEAQRCCICCEDEK---DTAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 349 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~---~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~ 349 (352)
+..+...|+||++... .++. +|||.||..|+.++ ..||+||..+...+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3456789999988653 3444 99999999999876 679999999987654
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.67 E-value=8.3e-09 Score=73.21 Aligned_cols=42 Identities=31% Similarity=0.707 Sum_probs=35.8
Q ss_pred cCCcccCcccCCCC----eee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018644 304 EAQRCCICCEDEKD----TAF-ECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~~~----~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
+...|+||++...+ +++ +|||.||..|+.++ ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999998755 555 99999999999877 68999999875
No 32
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.67 E-value=1.1e-08 Score=77.92 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=38.8
Q ss_pred ccccccCCcccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 299 SAEVAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~---~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.....+...|+||++...+ +.. +|||.||..|+.++ ..||+||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3445677899999887653 233 99999999999876 5799999998764
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=72.72 Aligned_cols=42 Identities=33% Similarity=0.789 Sum_probs=36.0
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFC 340 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-------~~CP~C 340 (352)
.....+...|+||++...+++. +|||.||..|+.++ ..||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456678899999999999877 99999999999865 469998
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.66 E-value=4.1e-09 Score=87.69 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=40.9
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
..+.+...|+||++...+++. +|||.||..|+..+ ..||+||.++..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345677899999999999887 99999999999765 379999999976
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2e-08 Score=73.46 Aligned_cols=42 Identities=31% Similarity=0.815 Sum_probs=36.2
Q ss_pred ccccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFC 340 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-------~~CP~C 340 (352)
...+.+...|+||++...+++. +|||.||..|+.++ ..||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778999999999999887 99999999999866 369998
No 36
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=76.98 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=40.4
Q ss_pred ccccccCCcccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCeee
Q 018644 299 SAEVAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTRRR 349 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~---~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~ 349 (352)
..+..+...|+||++...+ +.. +|||.||..|+.++ ..||+||.++.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455677899999997654 223 99999999999876 579999999987544
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=6.8e-09 Score=76.58 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=35.0
Q ss_pred cCCcccCccc-CCCCe----ee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 304 EAQRCCICCE-DEKDT----AF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~-~~~~~----~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
++..|+||++ ...++ ++ +|||.||..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 44443 34 99999999999877 469999999876
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.1e-08 Score=82.87 Aligned_cols=46 Identities=35% Similarity=0.845 Sum_probs=39.6
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-------CCCCCCccccCC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-------PQCPFCREEITT 346 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-------~~CP~CR~~i~~ 346 (352)
.+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34567899999999999876 99999999999865 279999999875
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.58 E-value=8.2e-09 Score=82.42 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=40.7
Q ss_pred ccccccCCcccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+++ + +|||.||..|+.++ ..||+||.++..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 345567799999999999976 4 89999999999876 479999999875
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.57 E-value=9.7e-09 Score=82.56 Aligned_cols=47 Identities=36% Similarity=0.902 Sum_probs=40.8
Q ss_pred cccccCCcccCcccCCCCeee--cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 456678999999999999765 99999999999876 479999999865
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.54 E-value=2e-08 Score=81.54 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=41.2
Q ss_pred cccccCCcccCcccCCCCee-e-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
..+.+...|+||++...+++ + +|||.||..|+..+ ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45678899999999999976 4 99999999999876 579999999875
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.3e-08 Score=87.91 Aligned_cols=48 Identities=27% Similarity=0.585 Sum_probs=41.4
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 347 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~~ 347 (352)
..+.+...|+||++...+++. +|||.||..|+..+ ..||+||.++...
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345677899999999999887 99999999999876 3799999998864
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.54 E-value=1.9e-08 Score=79.49 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=37.5
Q ss_pred cccCCcccCcccCCCC---eee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKD---TAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~---~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
..+...|+||++.... +.. +|||.||..|+..+ ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 3466789999987655 444 99999999999876 5799999998754
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.51 E-value=2.3e-08 Score=87.12 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=39.2
Q ss_pred cccccCCcccCcccCCCCee-e-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
..+.+...|+||++...+++ + +|||.||..|+.++ ..||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34556789999999999976 4 99999999999876 459999999854
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=2.3e-08 Score=75.74 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=36.2
Q ss_pred ccCCcccCcccCCCCe---ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDT---AF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~---~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
.+...|+||++...+. .. +|||.||..|+.++ ..||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4667899999876542 33 99999999999876 679999998865
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=3.8e-08 Score=81.08 Aligned_cols=48 Identities=21% Similarity=0.569 Sum_probs=41.5
Q ss_pred ccccccCCcccCcccCCCCee-e-cCCCCCchhhhhcC--CCCCCCccccCC
Q 018644 299 SAEVAEAQRCCICCEDEKDTA-F-ECGHMSCIKCALRM--PQCPFCREEITT 346 (352)
Q Consensus 299 ~~~~~~~~~C~IC~~~~~~~~-~-pCGH~~C~~C~~~~--~~CP~CR~~i~~ 346 (352)
...+.+...|+||++...+++ + +|||.||..|+..+ ..||+||.++..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 345678899999999999976 4 99999999999988 469999999854
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.50 E-value=4.2e-08 Score=96.98 Aligned_cols=46 Identities=41% Similarity=0.947 Sum_probs=40.3
Q ss_pred CCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCeeec
Q 018644 305 AQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTRRRV 350 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~~i~i 350 (352)
..+|+||++...++++ ||||.||..|+..+ ..||+||.++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4799999999999987 99999999999854 6799999999886544
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.46 E-value=6.9e-08 Score=75.54 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
..+.+...|+||++..++++. +|||.||+.|+.++ ..||+||+++...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 345678999999999999998 99999999999876 5799999998753
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.46 E-value=4.4e-08 Score=80.87 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=41.2
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345677899999999999887 99999999999876 389999999876
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.44 E-value=4e-08 Score=80.63 Aligned_cols=47 Identities=32% Similarity=0.611 Sum_probs=41.1
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
.++.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 455678999999999999887 99999999999865 479999999875
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.44 E-value=1.3e-07 Score=76.12 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=41.8
Q ss_pred cccccCCcccCcccCCCCeee-cCC-CCCchhhhhcC----CCCCCCccccCCe
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECG-HMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCG-H~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
..+.+...|+||++..+++|. +|| |.||+.|+.++ ..||+||+++...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 345678999999999999998 999 99999999876 4699999998753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.42 E-value=6.7e-08 Score=78.08 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=41.0
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
.+.+...|+||++..++++. +|||.||+.|+.++ ..||+||+++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999999998 99999999999876 469999999875
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.42 E-value=2.5e-08 Score=85.36 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=40.0
Q ss_pred cccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccC
Q 018644 300 AEVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEIT 345 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~ 345 (352)
..+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 355678999999999999887 99999999999987 37999999763
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=1.9e-07 Score=86.66 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=38.9
Q ss_pred ccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
.+...|+||++...++|. +|||.||+.|+.++ ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 367899999999999998 99999999999865 349999999875
No 55
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.31 E-value=1.1e-07 Score=77.45 Aligned_cols=43 Identities=30% Similarity=0.685 Sum_probs=34.1
Q ss_pred CCcccCcccCCCCe------------------ee-cCCCCCchhhhhcC---------CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDT------------------AF-ECGHMSCIKCALRM---------PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~------------------~~-pCGH~~C~~C~~~~---------~~CP~CR~~i~~~ 347 (352)
+..|+||++...+. .+ +|||.||..|+..+ ..||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 45899999986442 14 99999999999865 3699999988653
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.26 E-value=1.3e-07 Score=78.15 Aligned_cols=45 Identities=31% Similarity=0.795 Sum_probs=38.0
Q ss_pred ccCCcccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~-------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
.+...|+||++...++ +. +|||.||..|+.++ ..||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4678999999987765 55 99999999999876 5799999998753
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.18 E-value=4.5e-07 Score=79.14 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=41.1
Q ss_pred ccccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 301 EVAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
.+.+...|+||++...+++. +|||.||..|+.++ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45678899999999999887 99999999999876 389999999876
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=6.3e-07 Score=71.23 Aligned_cols=42 Identities=29% Similarity=0.513 Sum_probs=36.4
Q ss_pred cccCCcccCcccCCCCeee-c-CCCCCchhhhhcC----------CCCCC--Cccc
Q 018644 302 VAEAQRCCICCEDEKDTAF-E-CGHMSCIKCALRM----------PQCPF--CREE 343 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-p-CGH~~C~~C~~~~----------~~CP~--CR~~ 343 (352)
..+...|+||++...++|. + |||.||+.|+.++ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3577899999999999887 6 9999999999866 27999 9865
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=67.93 Aligned_cols=43 Identities=28% Similarity=0.678 Sum_probs=34.1
Q ss_pred cCCcccCcccCCCC--------------e-ee-cCCCCCchhhhhcC----CCCCCCccccCC
Q 018644 304 EAQRCCICCEDEKD--------------T-AF-ECGHMSCIKCALRM----PQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~~~--------------~-~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~ 346 (352)
+...|+||++...+ + ++ +|||.|+..|+.++ ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45679999987654 3 34 59999999999876 579999998764
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.10 E-value=8.3e-07 Score=79.08 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=39.9
Q ss_pred cccCCcccCcccCCCCeee-cCCCCCchhhhhcC-----CCCCCCccccCCe
Q 018644 302 VAEAQRCCICCEDEKDTAF-ECGHMSCIKCALRM-----PQCPFCREEITTR 347 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~-pCGH~~C~~C~~~~-----~~CP~CR~~i~~~ 347 (352)
+.+...|+||++...++|. +|||.||+.|+.++ ..||+||.++...
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3568899999999999998 99999999999876 2599999998753
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.08 E-value=5.3e-07 Score=74.46 Aligned_cols=49 Identities=31% Similarity=0.802 Sum_probs=39.5
Q ss_pred ccCCcccCcccCCCCe-------ee-cCCCCCchhhhhcC----CCCCCCccccCCe--eecC
Q 018644 303 AEAQRCCICCEDEKDT-------AF-ECGHMSCIKCALRM----PQCPFCREEITTR--RRVY 351 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~-------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~~~--i~if 351 (352)
.+...|+||++...+. +. +|||.||..|+.++ ..||+||.++... +++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4678899999976653 44 99999999999876 6899999998863 4544
No 62
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.04 E-value=3.9e-05 Score=71.55 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=97.1
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchH-HHHHHHHhccccccCC---C-ccceeeecCCCCCCCCcc
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPY-QEVIYITGKELVLFDG---D-CIRCYGFGDDTTRDEGVF 121 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Y-q~ai~~ig~vl~~yd~---d-~ip~~GFGa~~~~~~~~f 121 (352)
..+++++.||-|.|=+ ...+ +.+...+..++..+.. + .+-++.|+.... ..|
T Consensus 20 ~~~div~vlD~SgSM~--------------------~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~ 76 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIR--------------------RHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EII 76 (281)
T ss_dssp SCEEEEEEEECCCCSS--------------------THHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEE
T ss_pred CceeEEEEEeCCCCcC--------------------HHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEE
Confidence 4688999999887732 0123 4455555555555553 6 999999998642 235
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC---CceEEEEEEeCCccCCccHHHHHHH---
Q 018644 122 SFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG---GLHHVLVIITSGQVATGSQQEQETI--- 195 (352)
Q Consensus 122 ~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~---~~Y~VLlIitDG~i~d~~~~~~~~i--- 195 (352)
+++... -...+.++++-.+.-......|-|+...-|+.|.+.....+ ..-.++|+||||.-+| .....+++
T Consensus 77 ~l~~~~--~~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d-~~~~~~~~~~l 153 (281)
T 4hqf_A 77 RLHSDA--SKNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS-IQDSLKESRKL 153 (281)
T ss_dssp EECSSC--SSCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC-HHHHHHHHHHH
T ss_pred EccccC--ccCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC-cHHHHHHHHHH
Confidence 554321 12345555544443223456889999999999977765432 2467889999999987 34555555
Q ss_pred hcCCcEEEEEeecCC-CcchhccccC
Q 018644 196 SSYPLSIVLVGVGDG-PWESIQKFHD 220 (352)
Q Consensus 196 S~~PlSIiiVGVG~~-~f~~m~~LD~ 220 (352)
.+.-+-|+.||||++ +-+.|+.+-+
T Consensus 154 ~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 154 SDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 556799999999985 6666777754
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.88 E-value=6e-06 Score=77.47 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=39.7
Q ss_pred ccccCCcccCcccCCCCeee--cCCCCCchhhhhcC------CCCCC--CccccCC
Q 018644 301 EVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPF--CREEITT 346 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~------~~CP~--CR~~i~~ 346 (352)
.......|+||++..+++|. .|||.||+.|+.++ ..||+ ||+.+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34678999999999999884 99999999999976 25999 9998765
No 64
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.86 E-value=4.6e-05 Score=70.76 Aligned_cols=148 Identities=13% Similarity=0.161 Sum_probs=97.2
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchH-HHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcc
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPY-QEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVF 121 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Y-q~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f 121 (352)
..+++++.||-|.|=+ ...+ +++...+-.++..++ ++ .+-++.|+.... ..|
T Consensus 17 ~~~DivfvlD~SgSM~--------------------~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~ 73 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIG--------------------YPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELI 73 (266)
T ss_dssp CCEEEEEEEECSTTTC--------------------HHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEE
T ss_pred CceeEEEEEECCCCcC--------------------hhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEE
Confidence 3588999999887732 1234 355666666667776 55 999999998632 245
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc---CCceEEEEEEeCCccCCccHHHHHHH---
Q 018644 122 SFQENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES---GGLHHVLVIITSGQVATGSQQEQETI--- 195 (352)
Q Consensus 122 ~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~---~~~Y~VLlIitDG~i~d~~~~~~~~i--- 195 (352)
+|+... -...+.++++-.+.-......|-|+...-|+.|.+..+.. ...-.++|+||||..+| .....+++
T Consensus 74 ~l~~~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d-~~~~~~~a~~l 150 (266)
T 4hqo_A 74 RLGSGQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS-KYRALEVANKL 150 (266)
T ss_dssp CTTSHH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-HHHHHHHHHHH
T ss_pred ecCCCC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-chHHHHHHHHH
Confidence 554210 0124455554444322235789999999999997776653 23457889999999988 35555555
Q ss_pred hcCCcEEEEEeecCCC-cchhccccC
Q 018644 196 SSYPLSIVLVGVGDGP-WESIQKFHD 220 (352)
Q Consensus 196 S~~PlSIiiVGVG~~~-f~~m~~LD~ 220 (352)
.+..+.|..||||+.. -+.|+.+-+
T Consensus 151 ~~~gi~i~~iGiG~~~~~~~L~~iA~ 176 (266)
T 4hqo_A 151 KQRNVRLAVIGIGQGINHQFNRLIAG 176 (266)
T ss_dssp HHTTCEEEEEECSSSCCHHHHHHHHT
T ss_pred HHCCCEEEEEecCcccCHHHHHHhhC
Confidence 5678999999999854 344466654
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.84 E-value=5.8e-06 Score=67.43 Aligned_cols=42 Identities=29% Similarity=0.596 Sum_probs=33.7
Q ss_pred cCCcccCcccCCCCe------------------ee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018644 304 EAQRCCICCEDEKDT------------------AF-ECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~------------------~~-pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
+...|.||++...+. ++ +|||.|+..|+.++ ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899999875532 33 99999999999975 57999999854
No 66
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=8.4e-05 Score=65.77 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=93.7
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
..+++++.||-|.|=.. . ...++..+.|-..+..++..+..+.+-++.|+.... .+++++.
T Consensus 10 ~~~~iv~vlD~SgSM~~-------------~--d~~~~r~~~ak~~~~~~~~~~~~~~v~lv~F~~~~~---~~~~~~~- 70 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLA-------------Q--DVQPSRLEKAKRLISRLVDELDNDKVGMIVFAGDAF---TQLPITS- 70 (218)
T ss_dssp CCCEEEEEEECSGGGGC-------------C--SSSSCHHHHHHHHHHHHHHTCSSCEEEEEEESSSEE---EEEEEES-
T ss_pred CCCcEEEEEECCcCccc-------------c--cCCcCHHHHHHHHHHHHHHhCCCCeEEEEEECCCce---EeCCCCC-
Confidence 45788999999877431 1 122577888888888888888745999999987632 2344432
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCc-cHHHHHHHhcCCcEEEEE
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATG-SQQEQETISSYPLSIVLV 205 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~-~~~~~~~iS~~PlSIiiV 205 (352)
..+.+.+.-...-+.....|.|++..-|+.|.+..+.....-.++++||||..++- ..+..+.+.+..+.|..|
T Consensus 71 -----~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~i 145 (218)
T 3ibs_A 71 -----DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVL 145 (218)
T ss_dssp -----CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEE
T ss_pred -----CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEE
Confidence 34444443333333445578999999999888776544334568899999988762 122223336778999999
Q ss_pred eecCC
Q 018644 206 GVGDG 210 (352)
Q Consensus 206 GVG~~ 210 (352)
|||+.
T Consensus 146 gig~~ 150 (218)
T 3ibs_A 146 GVGMP 150 (218)
T ss_dssp EESCT
T ss_pred EecCC
Confidence 99974
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.70 E-value=5.7e-06 Score=65.29 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=32.2
Q ss_pred cCCcccCcccCCCCee---e-cCCCCCchhhhhcC------------CCCCC--Cccc
Q 018644 304 EAQRCCICCEDEKDTA---F-ECGHMSCIKCALRM------------PQCPF--CREE 343 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~---~-pCGH~~C~~C~~~~------------~~CP~--CR~~ 343 (352)
+..+|+||++...... + +|||.||..|.... ..||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5678999999876632 3 79999999998743 26999 9998
No 68
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.64 E-value=0.0006 Score=59.23 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=93.8
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++++.||-|.|=+ .+.++.+...+..++..++ .+ .+-++.|+.... ..|++
T Consensus 5 ~~div~vlD~SgSm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l 61 (189)
T 1atz_A 5 PLDVILLLDGSSSFP--------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPW 61 (189)
T ss_dssp CEEEEEEEECSSSSC--------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred ceeEEEEEeCCCCCC--------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEec
Confidence 478889999887732 1446666666666666664 34 899999987532 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc-----CCceEEEEEEeCCccCCccHHHHHHHhcC
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETISSY 198 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~iS~~ 198 (352)
+. ....+.+.++-.+ ++. ..|-|+...-|+.|.+..... ...-.+++|||||..+|-..+..+.+.+.
T Consensus 62 ~~----~~~~~~~~~~i~~-l~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~~~~~~~~~~~ 134 (189)
T 1atz_A 62 NV----VPEKAHLLSLVDV-MQR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDAAADAARSN 134 (189)
T ss_dssp TC----CCCHHHHHHHHHT-CCC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCHHHHHHHHHT
T ss_pred CC----CCCHHHHHHHHHh-CcC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchHHHHHHHHHHC
Confidence 32 1345666555443 222 368899999999999876542 12356778888887665344444444667
Q ss_pred CcEEEEEeecC-CCcchhccccC
Q 018644 199 PLSIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 199 PlSIiiVGVG~-~~f~~m~~LD~ 220 (352)
.+.|..||||+ .+-..|+.+-+
T Consensus 135 gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 135 RVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp TEEEEEEEESSSSCHHHHHHHTG
T ss_pred CCEEEEEEcCCcCCHHHHHHHHC
Confidence 89999999997 46666666643
No 69
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.63 E-value=0.00027 Score=60.71 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=87.8
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+++++.||-|.|=+. .+ ....++++.+..-+ ..++ .+-++.|+.... ..++++.
T Consensus 7 ~~div~vlD~SgSM~~-----------~~-------~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~---~~~~l~~- 62 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLH-----------HW-------NEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGT---TLMKLTE- 62 (185)
T ss_dssp EEEEEEEEECSGGGGG-----------GH-------HHHHHHHHHHHHHC--CCTTEEEEEEEESSSEE---EEEEEEC-
T ss_pred CeeEEEEEeCCCChhh-----------hH-------HHHHHHHHHHHHHh--CCCCcEEEEEEEecCce---EEeccCC-
Confidence 5788899998766320 01 12223333333322 2346 999999987532 2355542
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHH--c--CCceEEEEEEeCCccCCccH--HHHHHH---hc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEE--S--GGLHHVLVIITSGQVATGSQ--QEQETI---SS 197 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~--~--~~~Y~VLlIitDG~i~d~~~--~~~~~i---S~ 197 (352)
..+.+.++-.+. +.+...|-|+...-|+.+.+.... . ...-.++++||||..++ .. ...+.. .+
T Consensus 63 -----~~~~~~~~i~~l-~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~ 135 (185)
T 3n2n_F 63 -----DREQIRQGLEEL-QKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHE-DLFFYSEREANRSRD 135 (185)
T ss_dssp -----CHHHHHHHHHHH-HTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCH-HHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHH-hhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCC-CcccchHHHHHHHHH
Confidence 344444433332 223457999999999999886521 1 12457889999999877 22 112333 66
Q ss_pred CCcEEEEEeecCCCcchhccccC
Q 018644 198 YPLSIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 198 ~PlSIiiVGVG~~~f~~m~~LD~ 220 (352)
..+.|..||||+.+...|+++-+
T Consensus 136 ~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 136 LGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp TTEEEEEEECSSCCHHHHTTTSS
T ss_pred CCCEEEEEEeccCCHHHHHHHhC
Confidence 78999999999888877777764
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=4.8e-05 Score=58.84 Aligned_cols=48 Identities=19% Similarity=0.490 Sum_probs=37.1
Q ss_pred cccCCcccCcccCCC--Ceee-cCC-----CCCchhhhhcC------CCCCCCccccCCeee
Q 018644 302 VAEAQRCCICCEDEK--DTAF-ECG-----HMSCIKCALRM------PQCPFCREEITTRRR 349 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~--~~~~-pCG-----H~~C~~C~~~~------~~CP~CR~~i~~~i~ 349 (352)
..+...|.||++... +.++ ||. |.|...|+.++ ..||+||..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 345679999997543 3445 996 99999999987 379999999876543
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.62 E-value=8.4e-06 Score=67.75 Aligned_cols=42 Identities=29% Similarity=0.606 Sum_probs=0.8
Q ss_pred cCCcccCcccCCCC------------------eee-cCCCCCchhhhhcC----CCCCCCccccC
Q 018644 304 EAQRCCICCEDEKD------------------TAF-ECGHMSCIKCALRM----PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~~~------------------~~~-pCGH~~C~~C~~~~----~~CP~CR~~i~ 345 (352)
+...|.||++...+ +++ +|||.|+..|+.++ ..||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34689999987654 223 99999999999986 57999999853
No 72
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.60 E-value=0.00013 Score=62.51 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=90.0
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+++++.||-|.|=+. .. ....+.+...+..++. .+ .+-++.|+.... ..++++
T Consensus 6 ~~dvv~vlD~SgSM~~-----------~~------~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~-- 60 (182)
T 1shu_X 6 AFDLYFVLDKSGSVAN-----------NW------IEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT-- 60 (182)
T ss_dssp CEEEEEEEECSGGGGG-----------GH------HHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE--
T ss_pred ceeEEEEEECCCCccc-----------CH------HHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC--
Confidence 4788999999877320 01 1222333333344443 45 999999987532 134443
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc--CCceEEEEEEeCCccCCccHH-HHHHH---hcCCc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGSQQ-EQETI---SSYPL 200 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIitDG~i~d~~~~-~~~~i---S~~Pl 200 (352)
.+.+.+.++-. .+..+...|.|+...-|+.+.+..+.. ...-.++++||||.-++.... ..+.. .+..+
T Consensus 61 ----~~~~~~~~~l~-~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i 135 (182)
T 1shu_X 61 ----GDRGKISKGLE-DLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 135 (182)
T ss_dssp ----CCHHHHHHHHH-HHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTC
T ss_pred ----CCHHHHHHHHH-hcccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCC
Confidence 23333332222 222345779999999999999887654 234578899999998773111 12232 66789
Q ss_pred EEEEEeecCCCcchhccccC
Q 018644 201 SIVLVGVGDGPWESIQKFHD 220 (352)
Q Consensus 201 SIiiVGVG~~~f~~m~~LD~ 220 (352)
.|..||||+.+...|+++-+
T Consensus 136 ~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 136 SVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp EEEEEECSSCCHHHHHHHSS
T ss_pred EEEEEeCCcCCHHHHHHHhC
Confidence 99999999888888888765
No 73
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.59 E-value=0.00043 Score=59.81 Aligned_cols=133 Identities=12% Similarity=0.121 Sum_probs=86.5
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++++.||-|.|=+ ...++.+...+..++..++ .. .+-++.|+.... ..|+|
T Consensus 17 ~~divfvlD~SgSm~--------------------~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l 73 (178)
T 2xgg_A 17 QLDICFLIDSSGSIG--------------------IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDL 73 (178)
T ss_dssp CEEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred CeeEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeC
Confidence 488899999887742 1345666666666777765 34 999999998642 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHHHHc-----CCceEEEEEEeCCccCCccHHHHHHH--
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIVEES-----GGLHHVLVIITSGQVATGSQQEQETI-- 195 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a~~~-----~~~Y~VLlIitDG~i~d~~~~~~~~i-- 195 (352)
+... ....+.+.++-.+ +. ..|.|+...-|+.|.+..... ...-.++++||||.-+| .....+++
T Consensus 74 ~~~~--~~~~~~~~~~i~~----l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~-~~~~~~~~~~ 146 (178)
T 2xgg_A 74 QSPN--AVDKQLAAHAVLD----MPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS-DFRTVRAAKE 146 (178)
T ss_dssp TSGG--GSCHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH-HHHHSHHHHH
T ss_pred CCCC--ccCHHHHHHHHHh----CCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC-CccHHHHHHH
Confidence 4211 1144555544433 33 568999999999998864321 12347889999999887 33344444
Q ss_pred -hcCCcEEEEEeecCC
Q 018644 196 -SSYPLSIVLVGVGDG 210 (352)
Q Consensus 196 -S~~PlSIiiVGVG~~ 210 (352)
.+..+-|..||||+.
T Consensus 147 l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 147 IRELGGIVTVLAVGHY 162 (178)
T ss_dssp HHHTTCEEEEEECC--
T ss_pred HHHCCCEEEEEEcCCc
Confidence 556889999999964
No 74
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.40 E-value=0.00064 Score=68.52 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=98.5
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
..+++++.||-|.|=.+ ..+..+.+..++..++..+.++ .+-++.|+.... .+++++.
T Consensus 76 ~~~dvv~VLD~SGSM~~------------------~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~ 134 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDY------------------PRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGG 134 (464)
T ss_dssp CCEEEEEEEECCGGGGT------------------TTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSS
T ss_pred CCceEEEEEEcCcccCC------------------CCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCc
Confidence 34667777777655210 1356778888888888888777 999999987632 1334321
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccH-HHHHHH--hcCCcEE
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQ-QEQETI--SSYPLSI 202 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~-~~~~~i--S~~PlSI 202 (352)
. ....-..-.+.-.+.+..+...|-|++..-|+.+.+..++....-.++++||||..++... ...+++ ....+.|
T Consensus 135 ~--l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i 212 (464)
T 4fx5_A 135 Q--LLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSSIGNFTA 212 (464)
T ss_dssp S--CEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEE
T ss_pred c--cccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeE
Confidence 0 0000011223334455667788999999999999998776544557889999999875222 334444 4568899
Q ss_pred EEEeecC-CCcchhccccC
Q 018644 203 VLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 203 iiVGVG~-~~f~~m~~LD~ 220 (352)
..||+|+ .+...|++|-.
T Consensus 213 ~tiGiG~~~d~~~L~~IA~ 231 (464)
T 4fx5_A 213 DCRGIGEDWEPKELRKIAD 231 (464)
T ss_dssp EEEEESSSSCHHHHHHHHH
T ss_pred EEEEeCCccCHHHHHHHHH
Confidence 9999994 46777777753
No 75
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.40 E-value=0.00014 Score=63.43 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=88.5
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc-CCC-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF-DGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y-d~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++++.||-|.|=+ ...++.+...+-.++..+ ..+ .+-++.|+.... ..++++.
T Consensus 9 ~~div~vlD~SgSM~--------------------~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~ 65 (198)
T 1n3y_A 9 EQDIVFLIDGSGSIS--------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE 65 (198)
T ss_dssp CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHH
T ss_pred CeeEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCc
Confidence 478899999987742 123456666666666676 466 999999998632 1233321
Q ss_pred CCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHH-HHHc----CCceEEEEEEeCCccC-Ccc--HHHHHHHh
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDI-VEES----GGLHHVLVIITSGQVA-TGS--QQEQETIS 196 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~-a~~~----~~~Y~VLlIitDG~i~-d~~--~~~~~~iS 196 (352)
. .. .+...+.+..+. ..|.|+...-|+.+.+. .... ...-.++++||||.-+ |.. .+..+.+.
T Consensus 66 ~-------~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~ 137 (198)
T 1n3y_A 66 F-------RR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMAD 137 (198)
T ss_dssp H-------HH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHH
T ss_pred c-------CC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHH
Confidence 0 00 011233344443 57899999999999843 2321 2345788999999887 521 22223336
Q ss_pred cCCcEEEEEeecCCC-----cchhccccC
Q 018644 197 SYPLSIVLVGVGDGP-----WESIQKFHD 220 (352)
Q Consensus 197 ~~PlSIiiVGVG~~~-----f~~m~~LD~ 220 (352)
+..+.|..||||+.. ...|+.+-.
T Consensus 138 ~~gi~i~~igvG~~~~~~~~~~~L~~iA~ 166 (198)
T 1n3y_A 138 AAGIIRYAIGVGLAFQNRNSWKELNDIAS 166 (198)
T ss_dssp HTTCEEEEEEESGGGGSSTTHHHHHHHSC
T ss_pred HCCCEEEEEEccccccccccHHHHHHHHc
Confidence 778899999999864 556665544
No 76
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.36 E-value=0.00045 Score=61.00 Aligned_cols=151 Identities=10% Similarity=0.046 Sum_probs=93.7
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
..+++++.||-|.|=+. . ......+++..+..-+..++.+ .+-++.|+.... ..++++
T Consensus 14 ~~~div~vlD~SgSM~~-------------~----~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~- 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGA-------------S----NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS- 72 (223)
T ss_dssp -CEEEEEEEECSTTTCH-------------H----HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT-
T ss_pred CceeEEEEEeCCCCCch-------------H----HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc-
Confidence 45889999999877421 0 0133344555555445666667 999999988642 224442
Q ss_pred CCCCCCCHHHHHHHHHhhCCce-eeecCCCcHHHHHHHHHHHHHcC--------CceEEEEEEeCCccC---CccHHHHH
Q 018644 126 NDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVEESG--------GLHHVLVIITSGQVA---TGSQQEQE 193 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v-~l~gPt~fapiI~~a~~~a~~~~--------~~Y~VLlIitDG~i~---d~~~~~~~ 193 (352)
.+.-...+.+.++-...-+.. ...|-|+...-|+.|.+...... ..-.++++||||.-+ | .....+
T Consensus 73 -~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~-~~~~~~ 150 (223)
T 1q0p_A 73 -EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD-PITVID 150 (223)
T ss_dssp -SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC-THHHHH
T ss_pred -cCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC-hHHHHH
Confidence 222234455555444322211 24689999999999988865321 245788999999887 5 233344
Q ss_pred HH-h------------cCCcEEEEEeecC-CCcchhccccC
Q 018644 194 TI-S------------SYPLSIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 194 ~i-S------------~~PlSIiiVGVG~-~~f~~m~~LD~ 220 (352)
.+ . +..+-|..||||+ .+...|+.+=.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 151 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp HHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred HHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 44 2 2368899999996 46677777754
No 77
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.35 E-value=0.0011 Score=58.41 Aligned_cols=141 Identities=9% Similarity=0.117 Sum_probs=91.4
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++.+.||-|.|=+ .+.++++...+..++..++ .+ .+-+..|+.... ..|+|
T Consensus 13 ~~divfvlD~SgSm~--------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l 69 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLS--------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGL 69 (202)
T ss_dssp CEEEEEEEECBTTSC--------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred cccEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEec
Confidence 478899999887732 1346677777777777776 45 999999987632 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceee-ec-CCCcHHHHHHHHHHH-HHc--CCceEEEEEEeCCccCCc-cHHHHHHH--
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQY-FG-PTSYAPMVEAAVDIV-EES--GGLHHVLVIITSGQVATG-SQQEQETI-- 195 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l-~g-Pt~fapiI~~a~~~a-~~~--~~~Y~VLlIitDG~i~d~-~~~~~~~i-- 195 (352)
+.. ...+.+.++-. +++. .| -|+...-|++|.+.. .+. ...-.++++||||.-++- .+...+..
T Consensus 70 ~~~----~~~~~~~~~i~----~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~ 141 (202)
T 1ijb_A 70 KDR----KRPSELRRIAS----QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQG 141 (202)
T ss_dssp TCC----CCHHHHHHHHH----TCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHH
T ss_pred CCC----CCHHHHHHHHH----hCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHH
Confidence 421 23455544433 3333 45 499999999887542 211 124578899999987641 11233333
Q ss_pred -hcCCcEEEEEeecC-CCcchhcccc
Q 018644 196 -SSYPLSIVLVGVGD-GPWESIQKFH 219 (352)
Q Consensus 196 -S~~PlSIiiVGVG~-~~f~~m~~LD 219 (352)
-+..+.|..||||+ .+.+.|+.+-
T Consensus 142 l~~~gi~i~~igvG~~~~~~~L~~iA 167 (202)
T 1ijb_A 142 LKKKKVIVIPVGIGPHANLKQIRLIE 167 (202)
T ss_dssp HHHTTEEEEEEEESTTSCHHHHHHHH
T ss_pred HHHCCCEEEEEecCCcCCHHHHHHHh
Confidence 55789999999996 5777777774
No 78
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.32 E-value=0.0014 Score=58.54 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=85.1
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++++.||-|.|=+ .++++...+..++..++ .+ .+-++.|+.... ..|++
T Consensus 22 ~~div~vlD~SgSM~----------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l 76 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY----------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNL 76 (223)
T ss_dssp CEEEEEEEECSTTCC----------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECT
T ss_pred cceEEEEEECCCChh----------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEec
Confidence 478899999887621 15666666667777765 45 999999987532 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceee-ec-CCCcHHHHHHHHHH-HHH----cCCceEEEEEEeCCccCCccHHHHHHH-
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQY-FG-PTSYAPMVEAAVDI-VEE----SGGLHHVLVIITSGQVATGSQQEQETI- 195 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l-~g-Pt~fapiI~~a~~~-a~~----~~~~Y~VLlIitDG~i~d~~~~~~~~i- 195 (352)
+. ....+.++++- ..+.. .| -|+...-|++|.+. ... ....-.++++||||.-++ .....+++
T Consensus 77 ~~----~~~~~~~~~~i----~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~ 147 (223)
T 2b2x_A 77 NK----YSSTEEVLVAA----NKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NYRLKQVIQ 147 (223)
T ss_dssp TT----CCSHHHHHHHH----TTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTT-GGGHHHHHH
T ss_pred CC----CCCHHHHHHHH----HhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHH
Confidence 31 13455555443 34443 46 49999999999875 221 122457889999999888 33344444
Q ss_pred --hcCCcEEEEEeecCC
Q 018644 196 --SSYPLSIVLVGVGDG 210 (352)
Q Consensus 196 --S~~PlSIiiVGVG~~ 210 (352)
.+..+-|..||||+.
T Consensus 148 ~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 148 DCEDENIQRFSIAILGH 164 (223)
T ss_dssp HHHTTTEEEEEEEECGG
T ss_pred HHHHCCCEEEEEEecCc
Confidence 667889999999964
No 79
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.22 E-value=0.0026 Score=56.23 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=84.0
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+.+++.||-|.|=+ .++.+...+..++..++ .+ .+-++.|+.... ..|++
T Consensus 7 ~~div~vlD~SgSm~----------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l 61 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY----------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNL 61 (213)
T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECT
T ss_pred CccEEEEEECCCChh----------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEec
Confidence 477888899887621 14555556666666664 55 999999997532 23555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCcee-eec-CCCcHHHHHHHHHHH-HH----cCCceEEEEEEeCCccCCccHHHHHHH-
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQ-YFG-PTSYAPMVEAAVDIV-EE----SGGLHHVLVIITSGQVATGSQQEQETI- 195 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~-l~g-Pt~fapiI~~a~~~a-~~----~~~~Y~VLlIitDG~i~d~~~~~~~~i- 195 (352)
+. ....+.++++-.. +. ..| -|+...-|++|.+.. .. ....-.++++||||.-++ .....+++
T Consensus 62 ~~----~~~~~~~~~~i~~----l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~-~~~~~~~~~ 132 (213)
T 1pt6_A 62 NK----YSSTEEVLVAAKK----IVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHD-NHRLKKVIQ 132 (213)
T ss_dssp TT----CSSHHHHHHHHHT----CCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSC-SHHHHHHHH
T ss_pred cc----cCCHHHHHHHHHh----ccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCC-CccHHHHHH
Confidence 21 1345566554443 33 356 499999999988752 21 123467889999999888 34344444
Q ss_pred --hcCCcEEEEEeecCC
Q 018644 196 --SSYPLSIVLVGVGDG 210 (352)
Q Consensus 196 --S~~PlSIiiVGVG~~ 210 (352)
.+..+-|..||||+.
T Consensus 133 ~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 133 DCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHTTEEEEEEEECHH
T ss_pred HHHHCCCEEEEEEeccc
Confidence 567889999999963
No 80
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.14 E-value=0.00077 Score=67.56 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=94.7
Q ss_pred CceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc---CCC-ccceeeecCCCCCCCCcc
Q 018644 46 KVRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVF 121 (352)
Q Consensus 46 l~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y---d~d-~ip~~GFGa~~~~~~~~f 121 (352)
.+.+++++.||-|.|=+ ...+++|...+..+++.+ ..+ .+-+..|+.... .+|
T Consensus 7 ~~~~divfvlD~SgSM~--------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~ 63 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVS--------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLM 63 (509)
T ss_dssp SSEEEEEEEEECSTTSC--------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEE
T ss_pred CCCeeEEEEEeCCCccc--------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeE
Confidence 35789999999987732 123566666666666555 667 999999987532 234
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhCCceeee-----cCCCcHHHHHHHHHHHHHcC-----------CceEEEEEEeCCccC
Q 018644 122 SFQENDSPCQGFEHVLECYRKNVPNVQYF-----GPTSYAPMVEAAVDIVEESG-----------GLHHVLVIITSGQVA 185 (352)
Q Consensus 122 ~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~-----gPt~fapiI~~a~~~a~~~~-----------~~Y~VLlIitDG~i~ 185 (352)
+++. +.-...+.++++-. +++.. |-|+...-|+.|.+..+... ..=.++++||||.-+
T Consensus 64 ~l~~--~~~~~~~~~~~~l~----~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~ 137 (509)
T 2odp_A 64 SVLN--DNSRDMTEVISSLE----NANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSN 137 (509)
T ss_dssp CTTS--GGGGCHHHHHHHHH----TCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCC
T ss_pred eccC--CCCCCHHHHHHHHH----hcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCcc
Confidence 4431 12224555554433 34333 78999999999988764321 123688999999776
Q ss_pred Cc--cHHHHHHH-h--------cCCcEEEEEeecC--CCcchhccccC
Q 018644 186 TG--SQQEQETI-S--------SYPLSIVLVGVGD--GPWESIQKFHD 220 (352)
Q Consensus 186 d~--~~~~~~~i-S--------~~PlSIiiVGVG~--~~f~~m~~LD~ 220 (352)
+- ..+..+.+ . +..+.|..||||+ .+...|++|-+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 138 MGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp SSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred CCCChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 41 12223333 1 5678999999998 68888888865
No 81
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0014 Score=61.62 Aligned_cols=158 Identities=12% Similarity=0.124 Sum_probs=96.6
Q ss_pred cceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc---CCC-ccceeeecCCCCCCCCcccCCCC
Q 018644 51 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 51 ~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y---d~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+|.||-|.|=.. | ...+|.++.+..++-.++..+ ++. .+-+..|++...... .+++
T Consensus 6 tViviD~S~SM~~-~--------------D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl--~plT-- 66 (268)
T 4b4t_W 6 TVLVIDNSEYSRN-G--------------DFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL--STFT-- 66 (268)
T ss_dssp EEEEECCSSTTSS-T--------------TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE--EEEE--
T ss_pred EEEEEECCHHHhC-C--------------CCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec--cCCc--
Confidence 4678898877421 0 124688887777776666643 445 888888976532111 1221
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHc--CCceEEEEEEeCCccCCccHHHHHHH---hcCCcE
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEES--GGLHHVLVIITSGQVATGSQQEQETI---SSYPLS 201 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~--~~~Y~VLlIitDG~i~d~~~~~~~~i---S~~PlS 201 (352)
.....++ ..+.+++..|-|++..-|+.|....+.. ...-..+||+|||.+++-..+..+++ .+.-++
T Consensus 67 ----~D~~~il----~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~ 138 (268)
T 4b4t_W 67 ----AEFGKIL----AGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVA 138 (268)
T ss_dssp ----SCHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEE
T ss_pred ----chHHHHH----HHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 2344453 4566788999999999999999998754 23455568889998776334444444 444555
Q ss_pred EEEEeec--CCCcchhccccCCCCCcceeeEeeecc
Q 018644 202 IVLVGVG--DGPWESIQKFHDKIPALQFDNFHFVNF 235 (352)
Q Consensus 202 IiiVGVG--~~~f~~m~~LD~~~~~r~rDnvqFV~f 235 (352)
|=|||+| +.+-+.|+.|=+......-|+-+||..
T Consensus 139 v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 139 VDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp EEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred EEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 5566665 556677888732222222355566554
No 82
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.13 E-value=0.0033 Score=55.89 Aligned_cols=158 Identities=12% Similarity=0.133 Sum_probs=95.9
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhcccccc---CCC-ccceeeecCCCCCCCCcccCCC
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLF---DGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~y---d~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.++++||.|.|=. .. +..+|..+.|...+-.++..| ... .+-+..|++...+ -+.+++.
T Consensus 4 ~lvlvlD~S~SM~-------------~~--D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--~~~plT~ 66 (192)
T 2x5n_A 4 ATMILIDNSEWMI-------------NG--DYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--VLSTLTR 66 (192)
T ss_dssp EEEEEECCSGGGG-------------CT--TSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--EEEEEES
T ss_pred EEEEEEECCHhhc-------------cC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--EecCCCC
Confidence 4678899887632 11 123688888888777766544 344 8999999874221 1223332
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC--Cce-EEEEEEeCCccCCccHHHHHHH---hcCC
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLH-HVLVIITSGQVATGSQQEQETI---SSYP 199 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~--~~Y-~VLlIitDG~i~d~~~~~~~~i---S~~P 199 (352)
..+.++ +.+..+...|-|++..-|+.|.+..++.. ... -|+|+++|+.-.| ..+..+++ .+..
T Consensus 67 ------d~~~i~----~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~-~~~~~~~a~~lk~~g 135 (192)
T 2x5n_A 67 ------DYGKFL----SAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED-EKNLIRLAKRMKKNN 135 (192)
T ss_dssp ------CHHHHH----HHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSC-HHHHHHHHHHHHHTT
T ss_pred ------CHHHHH----HHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCC-chhHHHHHHHHHHCC
Confidence 344443 44445778899999999999998877642 223 3445555544334 34444444 6778
Q ss_pred cEEEEEeecCCCcch-hccccCCCCCcceeeEeeecchh
Q 018644 200 LSIVLVGVGDGPWES-IQKFHDKIPALQFDNFHFVNFTA 237 (352)
Q Consensus 200 lSIiiVGVG~~~f~~-m~~LD~~~~~r~rDnvqFV~f~~ 237 (352)
+.|.+||+|..+... |+.|=+... .-|+-+||...+
T Consensus 136 i~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~ 172 (192)
T 2x5n_A 136 VAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPP 172 (192)
T ss_dssp EEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECC
T ss_pred CEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecC
Confidence 899999999876532 777643211 126677775444
No 83
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.09 E-value=0.00017 Score=52.82 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=37.3
Q ss_pred CCcccCcccCCCCeee--cCCCCCchhhhhcC----CCCCCCccccCCe
Q 018644 305 AQRCCICCEDEKDTAF--ECGHMSCIKCALRM----PQCPFCREEITTR 347 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~----~~CP~CR~~i~~~ 347 (352)
...|+||++...++++ +|||.+|+.|+.++ ..||++++++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4689999999999875 79999999999987 5699999998653
No 84
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.06 E-value=0.006 Score=53.31 Aligned_cols=128 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++++.||-|.|=+ .++++...+..++..++ .+ .+-++.|+.... ..|+|
T Consensus 6 ~~div~vlD~SgSm~----------------------~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l 60 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY----------------------PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNL 60 (200)
T ss_dssp CEEEEEEEECCTTCC----------------------CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECT
T ss_pred cccEEEEEECCCCcc----------------------cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeC
Confidence 467888888876621 15666666777777776 45 999999987532 24666
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceee-ec-CCCcHHHHHHHHHH-HHHc----CCceEEEEEEeCCccCCccHHHHHHH-
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQY-FG-PTSYAPMVEAAVDI-VEES----GGLHHVLVIITSGQVATGSQQEQETI- 195 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l-~g-Pt~fapiI~~a~~~-a~~~----~~~Y~VLlIitDG~i~d~~~~~~~~i- 195 (352)
+. ....+.++++-.+ +.. .| -|+...-|+.|.+. .... ...-.++|+||||.-+| .....+++
T Consensus 61 ~~----~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~-~~~~~~~~~ 131 (200)
T 1v7p_C 61 NT----YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHD-GSMLKAVID 131 (200)
T ss_dssp TT----CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSC-GGGHHHHHH
T ss_pred CC----cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCC-cccHHHHHH
Confidence 41 2355666655443 333 35 59999999999885 2221 12357889999999888 33333333
Q ss_pred --hcCCcEEEEEeecC
Q 018644 196 --SSYPLSIVLVGVGD 209 (352)
Q Consensus 196 --S~~PlSIiiVGVG~ 209 (352)
.+..+.|..||||+
T Consensus 132 ~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 132 QCNHDNILRFGIAVLG 147 (200)
T ss_dssp HHHHTTEEEEEEEECH
T ss_pred HHHHCCCEEEEEEecc
Confidence 66789999999963
No 85
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.04 E-value=0.00057 Score=59.51 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=88.2
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC-CC-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD-GD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd-~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++++.||-|.|=+ ...++++...+..++..++ .+ .+-++.|+.... ..|+++.
T Consensus 5 ~~div~vlD~SgSm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~ 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSII--------------------PHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKE 61 (194)
T ss_dssp CEEEEEEEECCTTSC--------------------HHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHH
T ss_pred CeeEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCC
Confidence 478889999887732 1245566666666666665 45 999999988642 2354432
Q ss_pred -CCCCCCCHHHHHHHHHhhCCcee-eecCCCcHHHHHHHHHHH-HH-c---CCceEEEEEEeCCccC-Ccc--HHHHHHH
Q 018644 126 -NDSPCQGFEHVLECYRKNVPNVQ-YFGPTSYAPMVEAAVDIV-EE-S---GGLHHVLVIITSGQVA-TGS--QQEQETI 195 (352)
Q Consensus 126 -~~p~~~G~~gvl~~Y~~~l~~v~-l~gPt~fapiI~~a~~~a-~~-~---~~~Y~VLlIitDG~i~-d~~--~~~~~~i 195 (352)
.+. . .+ .+.+.++. ..|-|+...-|+.|.+.. .. . ...-.++++||||..+ |.. .+..+.+
T Consensus 62 ~~~~--~---~~----~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~ 132 (194)
T 1mf7_A 62 FQNN--P---NP----RSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA 132 (194)
T ss_dssp HHHS--C---CH----HHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH
T ss_pred cCCH--H---HH----HHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHH
Confidence 010 1 22 22334444 478999999999988632 21 1 1235788999999887 631 2223333
Q ss_pred hcCCcEEEEEeecCCC-----cchhccccC
Q 018644 196 SSYPLSIVLVGVGDGP-----WESIQKFHD 220 (352)
Q Consensus 196 S~~PlSIiiVGVG~~~-----f~~m~~LD~ 220 (352)
.+..+.|..||||+.. ...|+.+-+
T Consensus 133 ~~~gi~v~~igvG~~~~~~~~~~~L~~iA~ 162 (194)
T 1mf7_A 133 DREGVIRYVIGVGDAFRSEKSRQELNTIAS 162 (194)
T ss_dssp HHTTEEEEEEEESGGGCSHHHHHHHHHHSC
T ss_pred HHCCCEEEEEEecccccccccHHHHHHHhC
Confidence 5678999999999753 455555544
No 86
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=96.96 E-value=0.0002 Score=62.05 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=85.1
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
..++++.||-|.|=. | .....-.+++..+..-+ +..+ .+-++.|+.... ..++++.
T Consensus 5 ~~~vv~vlD~SgSM~--~---------------~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~--~~~~~~~-- 61 (189)
T 2x31_A 5 DRVLIFAVDASGSAA--V---------------ARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAA--QVLLQPS-- 61 (189)
T ss_dssp CCEEEEEEECCTTSC--C-----------------CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCC--CBCTTTC--
T ss_pred CeEEEEEEECCCCCC--c---------------hHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCc--eEecCCC--
Confidence 467889999988731 1 11233344444443222 3556 999999996322 1123332
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcC--CceEEEEEEeCCccCCccH----------HHHHH
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESG--GLHHVLVIITSGQVATGSQ----------QEQET 194 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~--~~Y~VLlIitDG~i~d~~~----------~~~~~ 194 (352)
.+.+.+.+ .+..+...|-|++..-|+.+.+..++.. ..-.++++||||..++-.. +..+.
T Consensus 62 ----~~~~~~~~----~i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~ 133 (189)
T 2x31_A 62 ----RSLTQTKR----QLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKV 133 (189)
T ss_dssp ----SCHHHHHH----HHHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEE
T ss_pred ----CCHHHHHH----HHhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHH
Confidence 24455433 3344567899999999999999887542 2356889999998765210 01111
Q ss_pred H---hcCCcEEEEEeecCCCcchhcccc
Q 018644 195 I---SSYPLSIVLVGVGDGPWESIQKFH 219 (352)
Q Consensus 195 i---S~~PlSIiiVGVG~~~f~~m~~LD 219 (352)
+ .+..+.|+.||+|+.+...|++|-
T Consensus 134 ~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 134 ARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 2 345678888999987655555553
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.76 E-value=0.0006 Score=54.84 Aligned_cols=41 Identities=27% Similarity=0.565 Sum_probs=30.9
Q ss_pred cccCcccCCCCe-ee-cCCCCCchhhhhc-----CCCCCCCccccCCe
Q 018644 307 RCCICCEDEKDT-AF-ECGHMSCIKCALR-----MPQCPFCREEITTR 347 (352)
Q Consensus 307 ~C~IC~~~~~~~-~~-pCGH~~C~~C~~~-----~~~CP~CR~~i~~~ 347 (352)
-|.+|--..+.- .+ ||.|.||..|+.. ...||+||.+|...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 477776544442 23 9999999999965 36799999999875
No 88
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=96.69 E-value=0.0026 Score=63.35 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=90.9
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc---cCCC-ccceeeecCCCCCCCCcccCC
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRDEGVFSFQ 124 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~---yd~d-~ip~~GFGa~~~~~~~~f~~~ 124 (352)
+++++.||-|.|=+ .+.++.|...+..++.. +..+ .+-++.|+.... ..+.++
T Consensus 2 ~div~vlD~SgSM~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIG--------------------ASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS 58 (497)
T ss_dssp EEEEEEEECSTTTC--------------------HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTT
T ss_pred eeEEEEEECCCCcc--------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeeccc
Confidence 57888999887732 14455555555555554 4556 999999987532 124332
Q ss_pred CCCCCCCCHHHHHHHHHhhCCce-eeecCCCcHHHHHHHHHHHHHc--------CCceEEEEEEeCCccCCc--cHHHHH
Q 018644 125 ENDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVEES--------GGLHHVLVIITSGQVATG--SQQEQE 193 (352)
Q Consensus 125 ~~~p~~~G~~gvl~~Y~~~l~~v-~l~gPt~fapiI~~a~~~a~~~--------~~~Y~VLlIitDG~i~d~--~~~~~~ 193 (352)
.+.-...+.+.++-.+.-..- ...|-|+...-|+.|.+..... ...-.++++||||.-++- ..+..+
T Consensus 59 --~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~ 136 (497)
T 1rrk_A 59 --EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVID 136 (497)
T ss_dssp --SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHH
T ss_pred --cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHH
Confidence 233345566665554433221 2467899999999998886311 123468899999977631 233333
Q ss_pred HHhcC-------------CcEEEEEeecC-CCcchhccccC
Q 018644 194 TISSY-------------PLSIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 194 ~iS~~-------------PlSIiiVGVG~-~~f~~m~~LD~ 220 (352)
.+.++ .+-|..||||+ .+...|++|-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 137 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp HHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred HHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 33222 68899999997 56777777754
No 89
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.58 E-value=0.002 Score=56.59 Aligned_cols=137 Identities=12% Similarity=0.158 Sum_probs=89.2
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccC---CC-ccceeeecCCCCCCCCcccC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFD---GD-CIRCYGFGDDTTRDEGVFSF 123 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd---~d-~ip~~GFGa~~~~~~~~f~~ 123 (352)
.+++.+.||-|.|=+ .+.++++...+-.++..++ ++ .+-+..|+.... ..|+|
T Consensus 21 ~~DivfvlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l 77 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIG--------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPF 77 (199)
T ss_dssp CCEEEEEEECCTTTC--------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECT
T ss_pred CcCEEEEEECCCCCC--------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEec
Confidence 478888888876632 1345666666667777774 55 999999998642 24555
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCceee-ecC-CCcHHHHHHHHHHH-HH-c---CCceEEEEEEeCCccCCccHHHHHHHh
Q 018644 124 QENDSPCQGFEHVLECYRKNVPNVQY-FGP-TSYAPMVEAAVDIV-EE-S---GGLHHVLVIITSGQVATGSQQEQETIS 196 (352)
Q Consensus 124 ~~~~p~~~G~~gvl~~Y~~~l~~v~l-~gP-t~fapiI~~a~~~a-~~-~---~~~Y~VLlIitDG~i~d~~~~~~~~iS 196 (352)
+. ....+.++++-.+ ++. .|. |+...-|+.+.+.. .. . ...-.++++||||...|... + .
T Consensus 78 ~~----~~~~~~~~~~i~~----l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~---~--~ 144 (199)
T 3zqk_A 78 SE----AQSKGDILQRLRE----IRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK---R--L 144 (199)
T ss_dssp TS----CCCHHHHHHHHHH----CCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC---C--C
T ss_pred CC----cCCHHHHHHHHHh----CcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH---H--H
Confidence 42 2345666655544 333 454 99888888877632 11 1 12236889999998776311 1 1
Q ss_pred cCCcEEEEEeec-CCCcchhccccC
Q 018644 197 SYPLSIVLVGVG-DGPWESIQKFHD 220 (352)
Q Consensus 197 ~~PlSIiiVGVG-~~~f~~m~~LD~ 220 (352)
...+.|..|||| +.+.+.|+++-.
T Consensus 145 ~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 145 PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 246889999999 778888888865
No 90
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=96.04 E-value=0.011 Score=61.76 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=89.5
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
..+++++.||-|.|=+ . .....-.+++..+.+-|..++.. +|-+.-|+.... .+++|+.
T Consensus 242 ~~~div~vlD~SgSM~-------------~----~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIG-------------A----SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp CEEEEEEEEECSTTTC-------------H----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred CceeEEEEeccCCccc-------------c----cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 3688999999887742 0 00123344444444444445555 899999987532 2355542
Q ss_pred CCCCCCCHHHHHHHHHhhCCcee-----eecCCCcHHHHHHHHHHHH---H-----cCCceEEEEEEeCCccCCc--cHH
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQ-----YFGPTSYAPMVEAAVDIVE---E-----SGGLHHVLVIITSGQVATG--SQQ 190 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~-----l~gPt~fapiI~~a~~~a~---~-----~~~~Y~VLlIitDG~i~d~--~~~ 190 (352)
. .-...+.++++- .++. ..|-|+...-|++|.+... . ....=.++|+||||.-++- -.+
T Consensus 302 ~--~~~~~~~~~~~i----~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~ 375 (741)
T 3hrz_D 302 A--DSSNADWVTKQL----NEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPIT 375 (741)
T ss_dssp G--GGGCHHHHHHHH----TTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHH
T ss_pred c--CCcCHHHHHHHH----HhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchH
Confidence 1 112445555444 4444 6789999999999988762 1 0123478899999965520 122
Q ss_pred HHHHH-------------hcCCcEEEEEeecC-CCcchhccccC
Q 018644 191 EQETI-------------SSYPLSIVLVGVGD-GPWESIQKFHD 220 (352)
Q Consensus 191 ~~~~i-------------S~~PlSIiiVGVG~-~~f~~m~~LD~ 220 (352)
..+.| .+..+.|..||||+ .+...|++|-.
T Consensus 376 ~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 376 VIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp HHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred HHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 22222 23468899999997 67777777764
No 91
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=95.52 E-value=0.051 Score=46.62 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=82.6
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCC-C-ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDG-D-CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~-d-~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++++.||-|.|=+ ...++++...+..++..++. + .+-+..|+.... ..|+|+.
T Consensus 2 ~~divfvlD~S~Sm~--------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~ 58 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQ--------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSD 58 (179)
T ss_dssp CEEEEEEEECBTTCC--------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHH
T ss_pred CccEEEEEeCCCCCC--------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcc
Confidence 367888999887732 12355666666666666654 4 899999998542 2354431
Q ss_pred CCCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHH-HHHc----CCceEEEEEEeCCccCCccHHHHHHHhcCCc
Q 018644 126 NDSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDI-VEES----GGLHHVLVIITSGQVATGSQQEQETISSYPL 200 (352)
Q Consensus 126 ~~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~-a~~~----~~~Y~VLlIitDG~i~d~~~~~~~~iS~~Pl 200 (352)
.. .-..++.+ .+.++. +.|-|+...-|+.|.+. .... ...-.++++||||.-+|- .. .....-+
T Consensus 59 ~~-~~~~~~~~----~~~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~-~~---~~~~~~i 127 (179)
T 1mjn_A 59 YV-KRKDPDAL----LKHVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDS-GN---IDAAKDI 127 (179)
T ss_dssp HH-HHCCHHHH----HTTCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSC-SC---CGGGTTS
T ss_pred cC-CHHHHHHH----HHhccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCC-cc---hHHHCCC
Confidence 00 00122222 223333 35889999999988753 2211 123578899999998773 21 1134567
Q ss_pred EEEEEeecCCCc-----chhcccc
Q 018644 201 SIVLVGVGDGPW-----ESIQKFH 219 (352)
Q Consensus 201 SIiiVGVG~~~f-----~~m~~LD 219 (352)
-|..||||+..- ..|+.+=
T Consensus 128 ~i~~igvG~~~~~~~~~~~L~~iA 151 (179)
T 1mjn_A 128 IRYIIGIGKHFQTKESQETLHKFA 151 (179)
T ss_dssp EEEEEEESGGGCSHHHHHTTGGGS
T ss_pred EEEEEEccccccccccHHHHHHHh
Confidence 899999997532 4555553
No 92
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.39 E-value=0.0049 Score=59.96 Aligned_cols=45 Identities=31% Similarity=0.632 Sum_probs=34.7
Q ss_pred ccCCcccCcccCCCC-ee-------e-cCCCCCchhhhhcC---------------CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKD-TA-------F-ECGHMSCIKCALRM---------------PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~-~~-------~-pCGH~~C~~C~~~~---------------~~CP~CR~~i~~~ 347 (352)
....+|.||++...+ .. - .|||.|-..|+.++ ..||.||++|+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456899999986555 11 1 79999999999765 2499999998754
No 93
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=95.34 E-value=0.018 Score=63.82 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=90.7
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC--ccceeeecCCCCCCCCcccCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD--CIRCYGFGDDTTRDEGVFSFQE 125 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d--~ip~~GFGa~~~~~~~~f~~~~ 125 (352)
.+++.+.||-|.|=+ .+.++++...+..+++.|+.+ ++-+..|+.... ..|+|+.
T Consensus 130 ~~DIvfvlD~SgSm~--------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~ 186 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSIS--------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEE 186 (1095)
T ss_dssp CEEEEEEEECCTTSC--------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHH
T ss_pred CccEEEEEcCCCCCC--------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcc
Confidence 478888888776621 245777778888888888876 999999988642 2355532
Q ss_pred --CCCCCCCHHHHHHHHHhhCCce-eeecCCCcHHHHHHHHHHHH-Hc----CCceEEEEEEeCCcc-CCccHHHHHHH-
Q 018644 126 --NDSPCQGFEHVLECYRKNVPNV-QYFGPTSYAPMVEAAVDIVE-ES----GGLHHVLVIITSGQV-ATGSQQEQETI- 195 (352)
Q Consensus 126 --~~p~~~G~~gvl~~Y~~~l~~v-~l~gPt~fapiI~~a~~~a~-~~----~~~Y~VLlIitDG~i-~d~~~~~~~~i- 195 (352)
+.. .+ .+++..+ .+.|-|+...-|++|.+... .. ...-.|+|+||||.- +| .....+++
T Consensus 187 ~~~~~---~l-------~~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d-~~~~~~~a~ 255 (1095)
T 3k6s_A 187 FRRSS---NP-------LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD-SLDYKDVIP 255 (1095)
T ss_dssp HHSCS---CG-------GGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC-SSCHHHHHH
T ss_pred cCCHH---HH-------HHHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC-chhHHHHHH
Confidence 111 11 1223333 45788999999988876432 11 123478899999998 45 23333333
Q ss_pred --hcCCcEEEEEeecCC-----CcchhccccC
Q 018644 196 --SSYPLSIVLVGVGDG-----PWESIQKFHD 220 (352)
Q Consensus 196 --S~~PlSIiiVGVG~~-----~f~~m~~LD~ 220 (352)
.+.-+.|..||||+. +.+.|+++-+
T Consensus 256 ~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 256 MADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp HHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred HHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 445778999999987 6777777754
No 94
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.97 E-value=0.024 Score=43.04 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=36.1
Q ss_pred ccCCcccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~------~~CP~CR~~i~~~ 347 (352)
.....|.||++....-.. .|+|.|=..|+.++ ..||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345899999998776444 89999999999855 5799999987653
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.70 E-value=0.034 Score=44.08 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=39.5
Q ss_pred cccccCCcccCcccCCCCeeecCCCCCchhhhhcC----CCCCCCccccCCeeec
Q 018644 300 AEVAEAQRCCICCEDEKDTAFECGHMSCIKCALRM----PQCPFCREEITTRRRV 350 (352)
Q Consensus 300 ~~~~~~~~C~IC~~~~~~~~~pCGH~~C~~C~~~~----~~CP~CR~~i~~~i~i 350 (352)
...-....|+.|+-..+..+-=.-|.+|..|+..| ..||+|..++..++++
T Consensus 23 ~s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 44556789999997766433344588999999988 4699999999988775
No 96
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.53 E-value=0.14 Score=53.15 Aligned_cols=147 Identities=12% Similarity=0.187 Sum_probs=89.9
Q ss_pred ccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc----cCCCccceeeecCCCCCC----CCcc
Q 018644 50 KLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL----FDGDCIRCYGFGDDTTRD----EGVF 121 (352)
Q Consensus 50 ~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~----yd~d~ip~~GFGa~~~~~----~~~f 121 (352)
.++++||.+.|=. ..+.+...++.+.|++.+..+++. -..|.+-++.||...+.. .+++
T Consensus 37 ~ivf~IDvS~SM~-------------~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~ 103 (609)
T 1jey_A 37 SLIFLVDASKAMF-------------ESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIY 103 (609)
T ss_dssp EEEEEEECSGGGG-------------CCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEE
T ss_pred EEEEEEECCHHHc-------------CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeE
Confidence 4789999986632 110012468999999999998885 344599999999976422 2333
Q ss_pred cCCC-CCCCCCCHHHHHHHHHhhCC---------ceeeecCCCcHHHHHHHHHHHHHcCCc--eEEEEEEeCCccC-Ccc
Q 018644 122 SFQE-NDSPCQGFEHVLECYRKNVP---------NVQYFGPTSYAPMVEAAVDIVEESGGL--HHVLVIITSGQVA-TGS 188 (352)
Q Consensus 122 ~~~~-~~p~~~G~~gvl~~Y~~~l~---------~v~l~gPt~fapiI~~a~~~a~~~~~~--Y~VLlIitDG~i~-d~~ 188 (352)
-+.+ +.+ +.+ .++..++.+. .+.....|.+...|..|+++.+....+ --++++||||.-. +..
T Consensus 104 v~~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~ 179 (609)
T 1jey_A 104 VLQELDNP---GAK-RILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGND 179 (609)
T ss_dssp EEEEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTC
T ss_pred EEecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCc
Confidence 2221 111 222 2222232221 011245799999999999988765333 3588999999642 201
Q ss_pred H----HHHHHH---hcCCcEEEEEeecCCC-cc
Q 018644 189 Q----QEQETI---SSYPLSIVLVGVGDGP-WE 213 (352)
Q Consensus 189 ~----~~~~~i---S~~PlSIiiVGVG~~~-f~ 213 (352)
. +...+. .++-+.|.+||||..+ |+
T Consensus 180 ~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 180 SAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 1 222222 7789999999999653 54
No 97
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=94.44 E-value=0.12 Score=53.11 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=88.5
Q ss_pred eccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccc---cCCC-ccceeeecCCCCCC-------
Q 018644 49 YKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVL---FDGD-CIRCYGFGDDTTRD------- 117 (352)
Q Consensus 49 ~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~---yd~d-~ip~~GFGa~~~~~------- 117 (352)
-.++++||.+.|=. .. +....+..+.|...+..+++. .... .+-++.||...+..
T Consensus 8 e~iv~~iDvS~SM~-------------~~-d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~ 73 (565)
T 1jey_B 8 AAVVLCMDVGFTMS-------------NS-IPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQ 73 (565)
T ss_dssp EEEEEEEECCGGGG-------------CC-BTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTC
T ss_pred eEEEEEEECChHhc-------------cc-CCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccC
Confidence 56899999987632 11 011468999999999988883 4444 99999999865321
Q ss_pred -CCcccCCCCCCCCCCHHHHHHHHHhhCCceeee-cCCCcHHHHHHHHHHHHHc--CCce--EEEEEEeCCccCCccHHH
Q 018644 118 -EGVFSFQENDSPCQGFEHVLECYRKNVPNVQYF-GPTSYAPMVEAAVDIVEES--GGLH--HVLVIITSGQVATGSQQE 191 (352)
Q Consensus 118 -~~~f~~~~~~p~~~G~~gvl~~Y~~~l~~v~l~-gPt~fapiI~~a~~~a~~~--~~~Y--~VLlIitDG~i~d~~~~~ 191 (352)
.+++-+.+-. .... .+++...+ .++.+ +.|.+...|..|++..++. ..++ -++++||||.-+--..+.
T Consensus 74 y~~i~vl~~l~--~~~~-~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~ 147 (565)
T 1jey_B 74 YQNITVHRHLM--LPDF-DLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQL 147 (565)
T ss_dssp STTEEEEEEEE--CCCH-HHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTH
T ss_pred CCceEEeecCC--CCCH-HHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHH
Confidence 1221111100 0111 34444333 23344 6899999999999988765 3334 578999999644101233
Q ss_pred HHHH---hcCCcEEE-EEeecCC
Q 018644 192 QETI---SSYPLSIV-LVGVGDG 210 (352)
Q Consensus 192 ~~~i---S~~PlSIi-iVGVG~~ 210 (352)
.+++ .+.-+.|. +||+|..
T Consensus 148 ~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 148 DIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp HHHHHHHHHTTEEEEEEESSCCC
T ss_pred HHHHHHHHhcCcEEEEEeccCCC
Confidence 3333 77889999 8999854
No 98
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.13 E-value=0.022 Score=41.23 Aligned_cols=44 Identities=25% Similarity=0.560 Sum_probs=32.1
Q ss_pred ccCCcccCcccCCCCeee-cCCC-----CCchhhhhcC------CCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGH-----MSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH-----~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
++...|.||++...+..+ ||.+ .+=..|+.++ ..||+||..+.-
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456789999987655555 8754 3556788876 579999998753
No 99
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=93.99 E-value=0.24 Score=50.42 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=77.5
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
...+++++||-|+|=.. . .. .... .+.++.-.++ .+..-..|.+-++.|+.... ..+++++
T Consensus 367 ~~~~v~lvvD~SgSM~~--~-~~----------~~~l-~~~~~Aa~l~-~~~~~~~d~vglv~Fs~~~~----~~~~t~~ 427 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQ--R-VL----------GSIL-NASVVAAAMC-MLVARTEKDSHMVAFSDEML----PCPITVN 427 (538)
T ss_dssp CCCCEEEEEECSGGGGS--B-ST----------TSSC-BHHHHHHHHH-HHHHHHCSSEEEEEESSSEE----CCSCCTT
T ss_pred CCceEEEEEECccccCC--C-CC----------CCcH-HHHHHHHHHH-HHHhccCCceEEEEECCCce----EcCCCCc
Confidence 34788999999888432 1 00 0111 2333322222 22222334788889986321 2334332
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCcc---HHHHHHH---hcCCc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGS---QQEQETI---SSYPL 200 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~---~~~~~~i---S~~Pl 200 (352)
.++..+++.-.. + ..|-|+++..|..+.+. ....-++|+||||..++-. .+..+.+ .+.++
T Consensus 428 ----~~l~~~l~~l~~----~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v 494 (538)
T 1yvr_A 428 ----MLLHEVVEKMSD----I-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPA 494 (538)
T ss_dssp ----SCHHHHHHHHTT----C-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCC
T ss_pred ----ccHHHHHHHHhc----C-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCc
Confidence 246666654432 2 57889999988887765 2345688999999765411 1222233 36788
Q ss_pred EEEEEeecCCCcc
Q 018644 201 SIVLVGVGDGPWE 213 (352)
Q Consensus 201 SIiiVGVG~~~f~ 213 (352)
.+++||+|..+..
T Consensus 495 ~l~~igig~~~~~ 507 (538)
T 1yvr_A 495 KLIVCAMTSNGFS 507 (538)
T ss_dssp EEEEEECSSSSEE
T ss_pred EEEEEEecCCCCc
Confidence 8999999987654
No 100
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.30 E-value=0.12 Score=40.38 Aligned_cols=30 Identities=27% Similarity=0.591 Sum_probs=23.8
Q ss_pred cCCcccCcccC-CCCee---ecCCCCCchhhhhc
Q 018644 304 EAQRCCICCED-EKDTA---FECGHMSCIKCALR 333 (352)
Q Consensus 304 ~~~~C~IC~~~-~~~~~---~pCGH~~C~~C~~~ 333 (352)
++..|.||.+. ..+++ +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45789999974 44544 39999999999986
No 101
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.24 E-value=0.39 Score=37.02 Aligned_cols=31 Identities=35% Similarity=0.808 Sum_probs=26.4
Q ss_pred ccCCcccCcccCCCCeee-cC----CCCCchhhhhc
Q 018644 303 AEAQRCCICCEDEKDTAF-EC----GHMSCIKCALR 333 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pC----GH~~C~~C~~~ 333 (352)
.....|.+|.++..+.-| .| +|.||..|.+.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 456899999999999888 77 57799999884
No 102
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=81.03 E-value=2.4 Score=43.08 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=77.4
Q ss_pred ceeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCCccceeeecCCCCCCCCcccCCCC
Q 018644 47 VRYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGDCIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 47 ~~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
...+++|+||-|+|=.+. + ... ....+ ..++-..++-++.. ..|.+-++.|++.... .+++++
T Consensus 361 ~~~~~lv~vDvSgSM~~~------~-~~~----~~k~~-~~e~Aa~la~~~~r-~~d~v~lv~Fs~~~~~----~~~~~~ 423 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCG------D-VAG----VPGLT-PNMAAAAMSLIALR-TEPDALTMGFAEQFRP----LGITPR 423 (535)
T ss_dssp CCSEEEEEECCSGGGGSC------C-GGG----CTTCC-HHHHHHHHHHHHHH-HSSEEEEEEEBSSEEE----CCCCTT
T ss_pred CCceEEEEEECCccccCC------C-CCC----CCccc-HHHHHHHHHHHHcC-cCCceEEEEECCcceE----cCCCcc
Confidence 347889999999884310 0 000 11234 34444455544333 3336777889874221 123322
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeecCCCcHHHHHHHHHHHHHcCCceEEEEEEeCCccCCccHHHHHHH------hcCCc
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFGPTSYAPMVEAAVDIVEESGGLHHVLVIITSGQVATGSQQEQETI------SSYPL 200 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~gPt~fapiI~~a~~~a~~~~~~Y~VLlIitDG~i~d~~~~~~~~i------S~~Pl 200 (352)
.++.++++.- ... ..|-|+++..|+.+.+ ...+.-+++|||||+.++-.....+++ .+.++
T Consensus 424 ----~~l~~~l~~l---~~~--~~ggTdi~~~l~~a~~----~~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~ 490 (535)
T 2nvo_A 424 ----DTLESAMQKA---QSV--SFGGTDCAQPILWAAQ----ERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAP 490 (535)
T ss_dssp ----CCHHHHHHHT---CCS--SBCCCCTTHHHHHHHH----TTCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCC
T ss_pred ----hhHHHHHHHH---hhC--CCCCccHHHHHHHHHH----hcCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCC
Confidence 4555554432 222 3689999988876633 334567889999997654211122233 46799
Q ss_pred EEEEEeecCCCcc
Q 018644 201 SIVLVGVGDGPWE 213 (352)
Q Consensus 201 SIiiVGVG~~~f~ 213 (352)
.+++||||.....
T Consensus 491 klv~i~l~~~~~~ 503 (535)
T 2nvo_A 491 KLIVVGLTATEFS 503 (535)
T ss_dssp EEEEEETTCSCCC
T ss_pred eEEEEeccCCCcc
Confidence 9999999986433
No 103
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=66.71 E-value=7.4 Score=35.73 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred ceEEEEEEeCCccC---CccHHHHHHH-hcCCcEEEEEeecCCC
Q 018644 172 LHHVLVIITSGQVA---TGSQQEQETI-SSYPLSIVLVGVGDGP 211 (352)
Q Consensus 172 ~Y~VLlIitDG~i~---d~~~~~~~~i-S~~PlSIiiVGVG~~~ 211 (352)
.--++++||||.-+ | +.....+ .+.-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~g~~--p~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPD--PVEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCSSSC--HHHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCCCCC--HHHHHHHHHHCCCEEEEEEecCCc
Confidence 34678999999754 3 2222223 6678999999998664
No 104
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=64.91 E-value=3.1 Score=37.98 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=33.9
Q ss_pred cCCcccCcccCCCCeee--cCCCCCchhhhhcC------CCCCCCccccCC
Q 018644 304 EAQRCCICCEDEKDTAF--ECGHMSCIKCALRM------PQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~------~~CP~CR~~i~~ 346 (352)
....|.+|.+....... .|+|.+=..|..+. ..||.|+.+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 36789999998877655 59988878888764 379999998655
No 105
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=63.84 E-value=0.47 Score=34.34 Aligned_cols=38 Identities=34% Similarity=0.845 Sum_probs=25.2
Q ss_pred ccCCcccCcccCCCCeee-cCCCC-------CchhhhhcC--------CCCCCCccc
Q 018644 303 AEAQRCCICCEDEKDTAF-ECGHM-------SCIKCALRM--------PQCPFCREE 343 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-pCGH~-------~C~~C~~~~--------~~CP~CR~~ 343 (352)
.+...|.||+.. -.- .|||. +|..|.-++ +.|-+||+.
T Consensus 7 ~d~~~C~iC~KT---KFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKT---KFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCS---CCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred CCcchhhhhccc---eeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 567899999942 112 67766 577776654 457777753
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=63.36 E-value=3.4 Score=40.29 Aligned_cols=44 Identities=25% Similarity=0.555 Sum_probs=33.8
Q ss_pred ccCCcccCcccCCCCeee--cCCCCCchhhh--------hcCCCCCCCccccCC
Q 018644 303 AEAQRCCICCEDEKDTAF--ECGHMSCIKCA--------LRMPQCPFCREEITT 346 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~--------~~~~~CP~CR~~i~~ 346 (352)
.-.+.||+-+.....++- .|.|.-|..-. ...|.||+|.+.+..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 456899999999888886 99999665442 234899999988743
No 107
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=61.27 E-value=4 Score=39.68 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=34.6
Q ss_pred cccCCcccCcccCCCCeee--cCCCCCchhhhh--------cCCCCCCCccccCC
Q 018644 302 VAEAQRCCICCEDEKDTAF--ECGHMSCIKCAL--------RMPQCPFCREEITT 346 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~--------~~~~CP~CR~~i~~ 346 (352)
..-.+.||+-+.....++- .|.|.-|..-.. ..|.||+|.+.+.-
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 3456899999998888886 999996655433 34899999998753
No 108
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.69 E-value=3.1 Score=39.60 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=32.0
Q ss_pred ccCCcccCcccCCCCeee-c----CCCC--CchhhhhcC----CCCCCCccc
Q 018644 303 AEAQRCCICCEDEKDTAF-E----CGHM--SCIKCALRM----PQCPFCREE 343 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~-p----CGH~--~C~~C~~~~----~~CP~CR~~ 343 (352)
.....||||-..+.-.++ . =|+. .|..|...+ .+||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 457899999998877655 2 3443 899999977 579999986
No 109
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=52.68 E-value=23 Score=38.32 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=30.0
Q ss_pred eeeecCCCcHHHHHHHHHHHHH-c-CCceEEEEEEeCCccCC
Q 018644 147 VQYFGPTSYAPMVEAAVDIVEE-S-GGLHHVLVIITSGQVAT 186 (352)
Q Consensus 147 v~l~gPt~fapiI~~a~~~a~~-~-~~~Y~VLlIitDG~i~d 186 (352)
+...|-|+...-|+.|+++.++ . ...=-++++||||.-++
T Consensus 351 l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~ 392 (893)
T 2ww8_A 351 MYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTM 392 (893)
T ss_dssp GGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSE
T ss_pred cccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCc
Confidence 3446789999999999988764 2 13346789999998765
No 110
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.98 E-value=15 Score=28.67 Aligned_cols=43 Identities=30% Similarity=0.738 Sum_probs=30.9
Q ss_pred cCCcccCcccCCC---C-eee----cCCCCCchhhhhcC-----CCCCCCccccCC
Q 018644 304 EAQRCCICCEDEK---D-TAF----ECGHMSCIKCALRM-----PQCPFCREEITT 346 (352)
Q Consensus 304 ~~~~C~IC~~~~~---~-~~~----pCGH~~C~~C~~~~-----~~CP~CR~~i~~ 346 (352)
....|.||-+..- + -+| -|+--+|+.|..-- +.||.|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4579999998521 1 133 66777999998743 679999988753
No 111
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.34 E-value=13 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
+...|.+|...+.-.. -.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4568999998765432 18999999999875
No 112
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.03 E-value=12 Score=26.83 Aligned_cols=35 Identities=29% Similarity=0.807 Sum_probs=27.5
Q ss_pred CcccCcccCCCCee-e---cCCCCCchhhhhcC----CCCCCC
Q 018644 306 QRCCICCEDEKDTA-F---ECGHMSCIKCALRM----PQCPFC 340 (352)
Q Consensus 306 ~~C~IC~~~~~~~~-~---pCGH~~C~~C~~~~----~~CP~C 340 (352)
..|-.|.....+.. + .|++.||.+|-.-+ -.||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999988776643 4 88999999998754 679998
No 113
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.42 E-value=3.5 Score=35.25 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=29.2
Q ss_pred cCCcccCcccCCC---C-eee--cCCCCCchhhhhcC-----CCCCCCccc
Q 018644 304 EAQRCCICCEDEK---D-TAF--ECGHMSCIKCALRM-----PQCPFCREE 343 (352)
Q Consensus 304 ~~~~C~IC~~~~~---~-~~~--pCGH~~C~~C~~~~-----~~CP~CR~~ 343 (352)
+...|.+|..... + ... .|.|.+|..|.... +.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 5689999998532 1 222 99999999999543 678888764
No 114
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.24 E-value=9.7 Score=29.27 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=23.3
Q ss_pred ccCCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 303 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
.+...|.+|...+.-.. ..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 35568999998665432 28999999999875
No 115
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.01 E-value=11 Score=30.93 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=23.3
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhcC
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALRM 334 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~~ 334 (352)
+...|.+|...+.-.. -.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4568999998765432 189999999998753
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.65 E-value=30 Score=30.96 Aligned_cols=29 Identities=28% Similarity=0.597 Sum_probs=21.9
Q ss_pred CCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 305 AQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
...|.+|...+.-.. ..||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 358999987665332 28999999999874
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.43 E-value=3.4 Score=34.53 Aligned_cols=40 Identities=28% Similarity=0.736 Sum_probs=29.5
Q ss_pred cCCcccCcccCCC---C-eee--cCCCCCchhhhhcC--------CCCCCCccc
Q 018644 304 EAQRCCICCEDEK---D-TAF--ECGHMSCIKCALRM--------PQCPFCREE 343 (352)
Q Consensus 304 ~~~~C~IC~~~~~---~-~~~--pCGH~~C~~C~~~~--------~~CP~CR~~ 343 (352)
+...|.+|..... + ... .|.|.+|..|.... +.|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4678999998762 1 223 89999999998844 558888764
No 118
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.88 E-value=14 Score=27.88 Aligned_cols=30 Identities=30% Similarity=0.676 Sum_probs=22.8
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
+...|.+|...+.-.. -.||+.||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4467999998765432 18999999999875
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.49 E-value=17 Score=27.82 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=23.0
Q ss_pred ccCCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 303 AEAQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
.+...|.+|...+.-.. ..||+.||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 34568999997654322 28999999999875
No 120
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.11 E-value=14 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=21.3
Q ss_pred CcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 306 QRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 306 ~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
..|.+|...+.-.. -.||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999998765432 18999999999864
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.14 E-value=14 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=22.6
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
+...|.+|...+.-.. ..||+.||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4468999998764432 18999999999874
No 122
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=34.40 E-value=29 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=22.8
Q ss_pred cccCCcccCcccCCCCeeecCC---CCCchhhhhc
Q 018644 302 VAEAQRCCICCEDEKDTAFECG---HMSCIKCALR 333 (352)
Q Consensus 302 ~~~~~~C~IC~~~~~~~~~pCG---H~~C~~C~~~ 333 (352)
...+..|.||-.......+||. -.|=..|+.+
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhccc
Confidence 3467899999988777777664 3344577775
No 123
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=33.56 E-value=44 Score=29.80 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=62.7
Q ss_pred eeccceEEEccCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHhccccccCCC-ccceeeecCCCCCCCCcccCCCC
Q 018644 48 RYKLIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN 126 (352)
Q Consensus 48 ~~~~~vaIDfT~SN~~~g~~~~~~~SLH~~~~~~~~N~Yq~ai~~ig~vl~~yd~d-~ip~~GFGa~~~~~~~~f~~~~~ 126 (352)
.+.+.+.+|+|.|=+. + ...-++.+..|.+-|+.+..+ ++-.-+|-++. ..++++|+.
T Consensus 3 pvDl~fl~D~S~SM~~------------d------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~- 61 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQG------------H------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA- 61 (212)
T ss_dssp CEEEEEEEECCGGGTT------------T------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES-
T ss_pred ceEEEEEEeCCCcchh------------H------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC-
Confidence 4678899999988531 2 356677777777777777778 76655565551 123444431
Q ss_pred CCCCCCHHHHHHHHHhhCCceeeec----CCC-cHHHHHHHHHHHHH--cCCceEEEEEEeCCccCC
Q 018644 127 DSPCQGFEHVLECYRKNVPNVQYFG----PTS-YAPMVEAAVDIVEE--SGGLHHVLVIITSGQVAT 186 (352)
Q Consensus 127 ~p~~~G~~gvl~~Y~~~l~~v~l~g----Pt~-fapiI~~a~~~a~~--~~~~Y~VLlIitDG~i~d 186 (352)
..+ .+++.+.+...+| |-. |.-+++.+....+- .+ .-.+||++||+.-+.
T Consensus 62 -----d~~----~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 62 -----DSS----QFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp -----CHH----HHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred -----CHH----HHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 222 3344444455555 322 33344433222211 12 569999999998776
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.28 E-value=12 Score=36.09 Aligned_cols=41 Identities=27% Similarity=0.545 Sum_probs=0.0
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhcC-----------CCCCCCcccc
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALRM-----------PQCPFCREEI 344 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~~-----------~~CP~CR~~i 344 (352)
+...|..|...+.-.. ..||+.||..|.... +.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4567999987654321 289999999998642 3476665544
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.75 E-value=27 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=22.0
Q ss_pred CCcccCcccCCCCee-----ecCCCCCchhhhhc
Q 018644 305 AQRCCICCEDEKDTA-----FECGHMSCIKCALR 333 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~ 333 (352)
...|.+|...+.-.. -.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 469999988665322 28999999999875
No 126
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=30.42 E-value=33 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=24.7
Q ss_pred CcccccccCCcccCcccCCCCeee--cCCCCCchhhhhcC
Q 018644 297 PVSAEVAEAQRCCICCEDEKDTAF--ECGHMSCIKCALRM 334 (352)
Q Consensus 297 ~~~~~~~~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~ 334 (352)
++.+.+.....|+.|-... .++ .-|-.+|..|..-+
T Consensus 3 ~~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 3 TSRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp TCSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred cchhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 3445666777899997543 455 55666899997644
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.49 E-value=12 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.635 Sum_probs=21.7
Q ss_pred CcccCcccCCCCeeecCCCCCchhhhhcC---CCCCCCccccC
Q 018644 306 QRCCICCEDEKDTAFECGHMSCIKCALRM---PQCPFCREEIT 345 (352)
Q Consensus 306 ~~C~IC~~~~~~~~~pCGH~~C~~C~~~~---~~CP~CR~~i~ 345 (352)
..||+|.....+ .=|+..|..|.... ..||-|.++++
T Consensus 33 ~~CP~Cq~eL~~---~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ---DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE---ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee---cCCEEECccccchhhccccCcchhhHHH
Confidence 789999854222 22233466666654 34777776654
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.25 E-value=18 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.671 Sum_probs=25.2
Q ss_pred cCCcccCcccCCCCee-----ecCCCCCchhhhhcC----CCCCCCc
Q 018644 304 EAQRCCICCEDEKDTA-----FECGHMSCIKCALRM----PQCPFCR 341 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~-----~pCGH~~C~~C~~~~----~~CP~CR 341 (352)
+...|..|-..+.-.. ..||..||..|.... +.|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 3468999988765432 289999999998753 3455543
No 129
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=29.06 E-value=50 Score=25.37 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=7.5
Q ss_pred cCCcccCcccC
Q 018644 304 EAQRCCICCED 314 (352)
Q Consensus 304 ~~~~C~IC~~~ 314 (352)
....|.||-+.
T Consensus 16 g~h~c~vCgd~ 26 (87)
T 2lze_A 16 GKHICAICGNN 26 (87)
T ss_dssp CSSSCSSSSSS
T ss_pred CCEEccCCCCc
Confidence 34578998763
No 130
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.27 E-value=26 Score=34.26 Aligned_cols=40 Identities=25% Similarity=0.687 Sum_probs=30.0
Q ss_pred cCCcccCcccCCCCeee----cCCCCCchhhhhcC--------------CCCCCCcccc
Q 018644 304 EAQRCCICCEDEKDTAF----ECGHMSCIKCALRM--------------PQCPFCREEI 344 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~----pCGH~~C~~C~~~~--------------~~CP~CR~~i 344 (352)
.+..|.+|-+-. ++++ .|...||..|+.++ |.|-+|...-
T Consensus 92 ~~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 357899999764 3333 57777999999864 7899998653
No 131
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.25 E-value=25 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=15.6
Q ss_pred cCCCCCchhhhhcCCCCCCCccccCC
Q 018644 321 ECGHMSCIKCALRMPQCPFCREEITT 346 (352)
Q Consensus 321 pCGH~~C~~C~~~~~~CP~CR~~i~~ 346 (352)
.||+.|+ .=..+...||.|+..-..
T Consensus 72 ~CG~~F~-~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-ccCCCCCCCcCCCCCccC
Confidence 6888882 111223689999986543
No 132
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.21 E-value=38 Score=25.54 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=31.2
Q ss_pred cCCcccCcccCCCCeee--cCCCCCchhhhhcC--CCCCCCccccC
Q 018644 304 EAQRCCICCEDEKDTAF--ECGHMSCIKCALRM--PQCPFCREEIT 345 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~--~~CP~CR~~i~ 345 (352)
+=..|..|........+ .=|..+|..|..++ .+|..|.++|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 33667777766554333 55666899999887 68999999998
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.06 E-value=23 Score=26.02 Aligned_cols=34 Identities=29% Similarity=0.691 Sum_probs=23.4
Q ss_pred ccccCCcccCcccCCCCeeecC-CCCCchhhhhcC
Q 018644 301 EVAEAQRCCICCEDEKDTAFEC-GHMSCIKCALRM 334 (352)
Q Consensus 301 ~~~~~~~C~IC~~~~~~~~~pC-GH~~C~~C~~~~ 334 (352)
..++..-|.||.+-.+--.+.| |-++|..|-..+
T Consensus 4 ~~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCCCEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCCeEEecCCCCceehHHHHHHH
Confidence 3356788999996633112288 777999998754
No 134
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.95 E-value=1.1e+02 Score=22.00 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=27.5
Q ss_pred cCCcccCcccCCCCeee--cCCCCCchhhhhcC--------CCCCCCcccc
Q 018644 304 EAQRCCICCEDEKDTAF--ECGHMSCIKCALRM--------PQCPFCREEI 344 (352)
Q Consensus 304 ~~~~C~IC~~~~~~~~~--pCGH~~C~~C~~~~--------~~CP~CR~~i 344 (352)
....|.||.+. .++++ .|...|=..|.... +.||.|+..-
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44679999864 34555 78766777777421 6899998653
No 135
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.48 E-value=68 Score=23.99 Aligned_cols=27 Identities=33% Similarity=0.664 Sum_probs=19.9
Q ss_pred ccCCcccCcccCCCCeee--cCCCCCchh
Q 018644 303 AEAQRCCICCEDEKDTAF--ECGHMSCIK 329 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~~~~--pCGH~~C~~ 329 (352)
.....|..|-....-+.| -||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 455789999876555555 888889974
No 136
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.52 E-value=53 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=26.4
Q ss_pred ccCCcccCcccCCCC--eee--cCCCCCchhhhhc--------CCCCCCCccccCCe
Q 018644 303 AEAQRCCICCEDEKD--TAF--ECGHMSCIKCALR--------MPQCPFCREEITTR 347 (352)
Q Consensus 303 ~~~~~C~IC~~~~~~--~~~--pCGH~~C~~C~~~--------~~~CP~CR~~i~~~ 347 (352)
.+...|.+|...... ++. .|..-|=..|+.. -+.||.|+..+.+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 344679999876433 333 5542233344431 25799999887654
No 137
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.21 E-value=41 Score=28.84 Aligned_cols=39 Identities=23% Similarity=0.715 Sum_probs=28.1
Q ss_pred CCcccCcccCCCCeee----cCCCCCchhhhhcC--------------CCCCCCcccc
Q 018644 305 AQRCCICCEDEKDTAF----ECGHMSCIKCALRM--------------PQCPFCREEI 344 (352)
Q Consensus 305 ~~~C~IC~~~~~~~~~----pCGH~~C~~C~~~~--------------~~CP~CR~~i 344 (352)
+..|.+|-+-- +++. .|-..||.+|+.++ +.|-+|...-
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 57999999753 3333 25566999999864 6799998653
Done!