BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018646
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 174 CIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNE- 232
++LF +++ I L F +P P+ +L P V + +P NE
Sbjct: 101 ALLLFAVETFSISIFFLNGFLSADPTDRPFPRPLQPEEL--------PTVDILVPSYNEP 152
Query: 233 KEVYQQSIAAVCNLDWPKSKILIQVLDD--------SDDPTAQTLIKEEVLKWQE--AGA 282
++ ++AA N+ +P + + DD S DP +E + Q+
Sbjct: 153 ADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCREL 212
Query: 283 NIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHF 336
+VY R + KAGN+ +A+ +K E V +FDAD P+ DFL RTV +F
Sbjct: 213 GVVYSTRERNEHAKAGNMSAALE--RLKG-ELVVVFDADHVPSRDFLARTVGYF 263
>pdb|3S30|A Chain A, Crystal Structure Of A Hypothetical Glycoside Hydrolase
(Bvu_0247) From Bacteroides Vulgatus Atcc 8482 At 2.46 A
Resolution
pdb|3S30|B Chain B, Crystal Structure Of A Hypothetical Glycoside Hydrolase
(Bvu_0247) From Bacteroides Vulgatus Atcc 8482 At 2.46 A
Resolution
Length = 354
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 51 KAAGCLTSIASAFFSLGSLVRRRVAAGRT-----DQPPTSADTHEIQKLRTRFFYSCIKL 105
+ CL I SLG+LV +AAG D +D K T F+Y IKL
Sbjct: 162 RTGNCLQLITRKTGSLGTLVGXPIAAGNLFIGSFDIGSAXSDALSATKFGTTFYYEPIKL 221
Query: 106 FLW 108
+
Sbjct: 222 VGY 224
>pdb|1AE7|A Chain A, Notexin, A Presynaptic Neurotoxic Phospholipase A2
pdb|4E4C|A Chain A, Crystal Structure Of Notexin At 1.8 A Resolution
Length = 119
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 206 HDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC 244
HDD D E+G+KG FP + C E Y ++I C
Sbjct: 48 HDDCYD-EAGKKGCFPKMSAYDYYCGENGPYCRNIKKKC 85
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANI 284
+ IP N ++ ++A +CN + I + +DD + + + EE+++ E+ NI
Sbjct: 96 IVIPTYNRAKILAITLACLCN----QKTIYDYEVIVADDGSKENI--EEIVREFESLLNI 149
Query: 285 VYRHRILRD-GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP 326
Y + +D GY+ +++ + K Y +VAI D D PNP
Sbjct: 150 KYVRQ--KDYGYQLCAVRN-LGLRAAK-YNYVAILDCDMAPNP 188
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANI 284
+ IP N ++ ++A +CN + I + +DD + + + EE+++ E+ NI
Sbjct: 97 IVIPTYNRAKILAITLACLCN----QKTIYDYEVIVADDGSKENI--EEIVREFESLLNI 150
Query: 285 VYRHRILRD-GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP 326
Y + +D GY+ +++ + K Y +VAI D D PNP
Sbjct: 151 KYVRQ--KDYGYQLCAVRN-LGLRAAK-YNYVAILDCDMAPNP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,376,563
Number of Sequences: 62578
Number of extensions: 396520
Number of successful extensions: 851
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 9
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)