BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018647
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9
PE=2 SV=1
Length = 463
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/342 (63%), Positives = 263/342 (76%), Gaps = 2/342 (0%)
Query: 5 HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
H + YSVG+F++D R ATKD+L +GRVPIVTGGTGLYLRWF+YGKPDVPK SPE+IAE
Sbjct: 114 HPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGGTGLYLRWFMYGKPDVPKPSPEVIAEA 173
Query: 65 NSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
+ L Q + +W AAVE VV AGDPKA SL NDWYRLRRSLEI+KSTGSPPS+F+IPY
Sbjct: 174 HDMLVGFQTEYNWDAAVELVVNAGDPKASSLPRNDWYRLRRSLEILKSTGSPPSSFRIPY 233
Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPK-DLDYDFMCFFLSSHRLDLYRSIDLRCEDM 183
DSFR + + + D E SSA S N + DLDYDF+CFFLSS R+ LYRSID RCEDM
Sbjct: 234 DSFRVNLVAPDADDFLEDGSSADISIQNIETDLDYDFLCFFLSSPRVALYRSIDFRCEDM 293
Query: 184 LPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAE 243
L G +G+LSEA WLLD GLLPNSN ATRAIGYRQAMEYLL+CR+ G SS EFYAFL +
Sbjct: 294 LSGPNGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNK 353
Query: 244 FQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRD 303
FQ ASRNFAKRQ+TWFR E +YHWLNA++PL+++L I AY + +P+ L++ +D
Sbjct: 354 FQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKD 413
Query: 304 SSSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCE 345
SRE SELK YR++NRHF+ R DC ++L+WI R++G E
Sbjct: 414 VRDSREASELKGYRSKNRHFVRREDCSSVLEWI-RSEGCKSE 454
>sp|A1U4C6|MIAA_MARAV tRNA dimethylallyltransferase OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=miaA PE=3 SV=1
Length = 347
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 134/270 (49%), Gaps = 29/270 (10%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS F DA A ++ +GR+P++ GGT +Y + ++G ++P A+ + AE+ E
Sbjct: 82 YSAADFRRDALAAMSEISGRGRIPLLVGGTMMYFKALLHGMSNLPSANQALRAEIERE-- 139
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAF-QIPYDSFR 128
+RDG W A E + + AR + N+ RL R++E+I+ T P S+F Q +
Sbjct: 140 -AERDG-WGALHEELAEKDPDAARLIHPNNRQRLMRAIEVIRLTDKPISSFWQSESGTSG 197
Query: 129 EHSDSSETDHSY----ERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDM 183
+H S D++Y + + SAG L Y F L+ + R L+ I R M
Sbjct: 198 QHPQSGIEDYTYFTSWQADESAG--------LPYTVFQFALAPAERSVLHSRIQKRFLAM 249
Query: 184 LPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAE 243
L G L E L+ G L + R +GYRQA +YL S ++ +F+A+
Sbjct: 250 LEA--GFLDEVRALMARGDLSPDLPSMRCVGYRQAWDYL---------SGNEDYDSFVAK 298
Query: 244 FQKASRNFAKRQLTWFRNERIYHWLNAARP 273
A+R AKRQLTW R R HWL++A P
Sbjct: 299 GVAATRQLAKRQLTWLRKWRDVHWLDSADP 328
>sp|Q6MBT2|MIAA_PARUW tRNA dimethylallyltransferase OS=Protochlamydia amoebophila (strain
UWE25) GN=miaA PE=3 SV=1
Length = 344
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 43/278 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F+ +AR A + +L +G VPI+ GG+G YL +YG P P + PE+ E+
Sbjct: 105 FNVVDFYYEARQACQKILDQGNVPIIAGGSGFYLHALLYGPPSGPPSVPEVRKSFEDEIE 164
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
L + + + DP+ A+++ ND ++ R+LEI+ T S ++ + R
Sbjct: 165 RLGSEILYERLSQL-----DPQYAKTITKNDKQKIVRALEIMMLTNKKVS--KLSWKGRR 217
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
K +YDF C+FL + LY ID RC+ ML +
Sbjct: 218 -------------------------KPQNYDFRCWFLHRPKEKLYERIDKRCDKML--EE 250
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G + E L G+ NS SA++AIGYRQA+ +L + ++ F+ F++A+
Sbjct: 251 GFMDEVRHLDSLGIRGNS-SASQAIGYRQALNFL------KTEQTASQYQEFIRSFKQAT 303
Query: 249 RNFAKRQLTWFRNERIYHWLNA-ARPLENVLNYIITAY 285
R++AKRQ TWFR E ++ WL+ E V + I+ Y
Sbjct: 304 RHYAKRQFTWFRKEPLFRWLDVDMHDPEVVFDMILKDY 341
>sp|B5EGD5|MIAA1_GEOBB tRNA dimethylallyltransferase 1 OS=Geobacter bemidjiensis (strain
Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1
Length = 306
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 53/279 (18%)
Query: 7 NTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNS 66
N ++ F +A A D+ ++G+ IV GGTGLY+R +YG D P PE
Sbjct: 74 NEDFTASDFRREATAAIADIERRGKRAIVVGGTGLYIRALLYGLVDSPTGDPE------- 126
Query: 67 ELADLQRDGDWYAAVEFVVKAG--DPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIP 123
L+R D E + + DP+ A L ND RL R+LE+ TG P SAF+
Sbjct: 127 ----LRRQFDDVPGEELLRRLSLVDPETAARLHPNDRVRLIRALEVYTQTGRPVSAFR-- 180
Query: 124 YDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDM 183
++H++ D+ Y + + R +LYR IDLR E M
Sbjct: 181 ------------SEHAF-------------SDVHYQVLKMAIRVERQELYRRIDLRVEKM 215
Query: 184 LPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAE 243
L DG++ E LL G + A R+IGY++ YL G + E +
Sbjct: 216 L--EDGLVEEVRLLLAAG-YGHELKALRSIGYKEITAYL------AGEMTLDEAVTLI-- 264
Query: 244 FQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYII 282
++ +R +AKRQ+TWF E +WL +L ++I
Sbjct: 265 -KRDTRRYAKRQMTWFGKENDIYWLEYPGSFATILGHVI 302
>sp|Q820E1|MIAA_CHLCV tRNA dimethylallyltransferase OS=Chlamydophila caviae (strain GPIC)
GN=miaA PE=3 SV=1
Length = 342
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 122/264 (46%), Gaps = 39/264 (14%)
Query: 5 HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
H+ ++ F+ A HA +++L + +VPI+ GG+G Y F+ G P P A E
Sbjct: 96 HVQELFNAVDFYYQAMHACQNILSRNKVPILVGGSGFYFHTFLSGPPGGPPAD----REF 151
Query: 65 NSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
+LA +D E + + AR++ ND ++ R+LEII TG S
Sbjct: 152 RDQLALYIQDHGLSFLYENLCQKDPEYARTITKNDKNKIVRALEIIHLTGRKVS------ 205
Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDML 184
EHS S E S E N +FLS + L +I LRC+ ML
Sbjct: 206 ----EHSWSMEPQESREYNCRG----------------WFLSPPKELLLDNIQLRCQKML 245
Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF 244
D ++ E LL++G+ NS SA++AIGYR+ +E++ QG E A +F
Sbjct: 246 --EDNLIGEVRGLLEQGIRENS-SASKAIGYREWIEFI----DQGSPEEAYE--AVKQKF 296
Query: 245 QKASRNFAKRQLTWFRNERIYHWL 268
+ + K+Q TWF+ ++ L
Sbjct: 297 ITNTCQYTKKQRTWFKRYPVFREL 320
>sp|A1AT90|MIAA1_PELPD tRNA dimethylallyltransferase 1 OS=Pelobacter propionicus (strain
DSM 2379) GN=miaA1 PE=3 SV=1
Length = 309
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 43/276 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+S F + A A ++++G+ PIV GGTGLYLR ++G D P + E+ + E
Sbjct: 76 FSAADFSDAASQAISGIIRRGKRPIVVGGTGLYLRALLHGLVDSPSGAGELRRRLQEEAR 135
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
+L A +E + + A ++ N+ R+ R LE+ TG P S +Q E
Sbjct: 136 ELGNQ----AMLERLRRVDPQLATTIHPNNLVRIIRGLEVYHLTGIPLSRYQ------HE 185
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
H ++E Y + + R +LY I+ R + ML + G
Sbjct: 186 HGFAAER---------------------YRSLAIGIRVERRELYERIERRVDRML--ATG 222
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
+L E LL+ G P A R+IGYR++ ++L G SS E A + ++ +R
Sbjct: 223 LLDEVRALLEAGFGPELK-AMRSIGYRESCDFL------AGNSSLEETTALI---KRNTR 272
Query: 250 NFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAY 285
+AKRQLTWF + WL +L + I +
Sbjct: 273 RYAKRQLTWFNADPEIIWLEYPEKFATILRHCIAFF 308
>sp|B1H0C6|MIAA_UNCTG tRNA dimethylallyltransferase OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=miaA PE=3 SV=1
Length = 299
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 51/251 (20%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS KF +DA ++LKKG+VP+VTGGTGLY++ +YG ++PKA + E+ ++
Sbjct: 90 YSAAKFVKDADLKISEILKKGKVPVVTGGTGLYIKALLYGLDEMPKADKTLRKELKTKSQ 149
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
D + Y+ V+ DP+A + RL R+LE+ +G + +E
Sbjct: 150 D-----ELYS----VLLKSDPEAAEKNKKNPQRLLRALEVNILSGR----------TMQE 190
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
H S +P+ Y+F + +S LY+ + RC+ M+ G
Sbjct: 191 HFKSK-----------------SPR---YNFGHYSISVDNKILYKKTNERCKYMI--ESG 228
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
++ E +L+ G N SA IGYR ++YL + + + EF K +R
Sbjct: 229 MIEETQKVLNMGFDKNC-SALSGIGYRHIIQYLEKKISKED---------LILEFSKDTR 278
Query: 250 NFAKRQLTWFR 260
++AKRQ TWF+
Sbjct: 279 HYAKRQNTWFK 289
>sp|Q74BP1|MIAA_GEOSL tRNA dimethylallyltransferase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=miaA PE=3 SV=1
Length = 311
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 45/260 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++ + +A ++ +G+ PI+ GGTGLY++ I G P A I AE+
Sbjct: 78 FTAADYRREAGRVITEIHSRGKRPILVGGTGLYIKTLIGGLAPSPGADDTIRAELEE--- 134
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
D + +G AA+ + DP A + L ND R+ R+LE+ TG P S FQ
Sbjct: 135 DARSEG--AAALHDRLAQVDPAAAARLHPNDRVRIVRALEVFLMTGKPLSEFQ------E 186
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
EH + E YD + +S R DLYR I+ R M ++
Sbjct: 187 EHRFADEP---------------------YDCLKLGISVERDDLYRRINERVNRMF--AE 223
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G + E + LL+ G P+ A AIGY++ YL GT S E + Q+ +
Sbjct: 224 GFVEEVSGLLNAGYSPDLK-AMGAIGYKEVCAYL------AGTCSLDEARELV---QRNT 273
Query: 249 RNFAKRQLTWFRNERIYHWL 268
R +AKRQLTWFR + W+
Sbjct: 274 RRYAKRQLTWFRKDPAIKWV 293
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain
Rf4) GN=miaA2 PE=3 SV=1
Length = 310
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 45/274 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+S F +A A D+ +G+ V GGTGLY+R + G D P I E+ ELA
Sbjct: 77 FSAADFRREAAAAIDDIHSRGKSVFVVGGTGLYIRALLQGLVDSPSGDESIRREL-VELA 135
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ + + V DP+ A L ND R+ R+LE+ + TG P S F+
Sbjct: 136 QTVGNEELLRRLALV----DPETAERLHPNDRLRIIRALEVYRQTGRPISTFR------- 184
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
S G +DT YD + L R +LYR ++ R E M+
Sbjct: 185 ---------------SEHGFADTY-----YDCLKIGLRVERQELYRRVESRVEVMI--EQ 222
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G+++E LL G P+ S R+IGY++ YL G + E + ++ +
Sbjct: 223 GLIAEVEGLLRAGYTPDLKS-MRSIGYKEICAYL------AGECTLDEAVQLI---KRDT 272
Query: 249 RNFAKRQLTWFRNERIYHWLNAARPLENVLNYII 282
R++AKRQ+TWF + +W+ + N++I
Sbjct: 273 RHYAKRQMTWFNKDFEINWVEYPESFATICNHVI 306
>sp|Q9Z6Z6|MIAA_CHLPN tRNA dimethylallyltransferase OS=Chlamydia pneumoniae GN=miaA PE=3
SV=1
Length = 342
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 41/269 (15%)
Query: 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEI 60
+ +H+ ++V F+ +A A +++L + +VPI+ GG+G Y F+ G P P A P+I
Sbjct: 92 IDIRHVQEPFNVVDFYYEAIQACQNILSRNKVPILVGGSGFYFHAFLSGPPKGPAADPQI 151
Query: 61 IAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAF 120
+L + + A E ++ A+++ ND ++ R LEII+ TG S
Sbjct: 152 ----REQLEAIAEEHGVSALYEDLLLKDPEYAQTITKNDKNKIIRGLEIIQLTGKKVS-- 205
Query: 121 QIPYDSFREHSDSSETDHSYERNSSAGASDTNPK-DLDYDFMCFFLSSHRLDLYRSIDLR 179
DH + D PK +Y +FLS L +I +R
Sbjct: 206 ----------------DHEW---------DIVPKASREYCCRAWFLSPETEFLKNNIQMR 240
Query: 180 CEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239
CE ML +G+L E LL++G+ N SA +AIGYR+ +E+L E+
Sbjct: 241 CEAML--QEGLLEEVRGLLNQGIRENP-SAFKAIGYREWIEFL------DNGEKLEEYEE 291
Query: 240 FLAEFQKASRNFAKRQLTWFRNERIYHWL 268
+F S ++ K+Q TWF+ I+ L
Sbjct: 292 TKRKFVSNSWHYTKKQKTWFKRYSIFREL 320
>sp|Q607R4|MIAA_METCA tRNA dimethylallyltransferase OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=miaA PE=3 SV=1
Length = 312
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 115/265 (43%), Gaps = 43/265 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+S G+F ++A D+ +GR+P++ GGT LY + G ++P A P++ E+ + A
Sbjct: 76 FSTGRFRDEALALIADITARGRLPVLAGGTMLYFNALLRGLAELPSADPDLRREIETRAA 135
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
RDG W+A + + P A + ND RL+R+LE+ TG R
Sbjct: 136 ---RDG-WHALHAELARIDPPAAARIHPNDPQRLQRALEVFYLTG-------------RT 178
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGSD 188
SD E S E L + + L+ S R L I R ML +
Sbjct: 179 LSDLCEGSRSPE--------------LPFRPLRIVLAPSSRAVLAERIAERFRRML--EE 222
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G L E L G L + + RA+GYRQA YL QG F F+ A+
Sbjct: 223 GFLEEVEALYRRGDLNETLPSIRAVGYRQAWGYL-----QGDYG----FDTFVERAIIAT 273
Query: 249 RNFAKRQLTWFRNERIYHWLNAARP 273
R FAKRQ TW R E WL P
Sbjct: 274 RQFAKRQCTWLRKETEATWLETGTP 298
>sp|Q3SIR0|MIAA_THIDA tRNA dimethylallyltransferase OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=miaA PE=3 SV=1
Length = 313
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 114/257 (44%), Gaps = 46/257 (17%)
Query: 7 NTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNS 66
N YS F +DAR + +GRVP++ GGT LY R + G D+P+A + +
Sbjct: 73 NETYSAAAFCDDARARMAAITARGRVPLLVGGTMLYFRALLQGLDDLPRADAALRKRLEQ 132
Query: 67 ELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYD 125
+ A+ + A+ + A DP A LA ND R+ R+LEI++ TG P SA Q+
Sbjct: 133 DAAE-----RGWPALHAELAALDPATAARLAPNDSQRIGRALEIVELTGRPMSA-QLAQ- 185
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFL-SSHRLDLYRSIDLRCEDML 184
P+ L YD + L S R L+R I R + ML
Sbjct: 186 --------------------------TPRALPYDVLQLALVPSDRAALHRRIGERFDAML 219
Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF 244
G++ E L +L ++ A RA+GYRQA YL + A +
Sbjct: 220 EA--GLVDEVEMLRRNHVLDSTMPAMRAVGYRQAWAYL---------DGDIDLEALREQG 268
Query: 245 QKASRNFAKRQLTWFRN 261
A+R AKRQLTW R+
Sbjct: 269 VAATRQLAKRQLTWLRS 285
>sp|C1DLQ1|MIAA_AZOVD tRNA dimethylallyltransferase OS=Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303) GN=miaA PE=3 SV=1
Length = 323
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 128/281 (45%), Gaps = 41/281 (14%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F +DA A ++ +GR+P++ GGT LY + + G D+P A P + AE+ + A
Sbjct: 74 YSAAEFRDDALAAMAEISARGRIPLLVGGTMLYYKALLEGLADMPSADPALRAELEARGA 133
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ +AA+ + DP+ A + ND RL R+LE+ + +G +A ++ +
Sbjct: 134 -----AEGWAALHRELATVDPESAARIHPNDPQRLVRALEVYRVSGLSMTAHRLRQVAQN 188
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
SD S +H L Y + ++ + R L+ I R ML
Sbjct: 189 PLSDRSAGEH-----------------LPYTVVHLAIAPTQRQILHERIARRFRLML--E 229
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYL--LRCRQQGGTSSTGEFYAFLAEFQ 245
G + E L G L S + RA+GYRQ EYL L R+Q +
Sbjct: 230 QGFVDEVELLWRRGDLHASLPSMRAVGYRQVWEYLDGLLTREQ-----------MVERGI 278
Query: 246 KASRNFAKRQLTWFRNERIYHWLNAARP--LENVLNYIITA 284
A+R AKRQ TW RN HWL++ L+ L Y+ TA
Sbjct: 279 IATRQLAKRQFTWLRNWTDLHWLDSLGDDNLQRTLKYLETA 319
>sp|Q24X66|MIAA_DESHY tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain Y51) GN=miaA PE=3 SV=1
Length = 314
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 56/281 (19%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE-- 67
++V +F A A +D+ +G+VPIV GGTGLY+R I P AE SE
Sbjct: 71 FTVAQFQTLANQAIQDIQSRGKVPIVVGGTGLYIRSLI---------DPFQFAEHGSESI 121
Query: 68 ----LADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAFQI 122
A L G E + DP A+ L ND R+ R+LE+ + TG P
Sbjct: 122 RSFWTAFLSEQGKEALHQELAKR--DPLSAQRLHPNDTVRIIRALEMCQLTGKP------ 173
Query: 123 PYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCED 182
F E + G D N L + L++ R +Y I+ RCE
Sbjct: 174 ----FSE---------------TRGNQDLNYPPLPPSTLYVGLTAPREIIYERINRRCEQ 214
Query: 183 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 242
M+ + G++ E L+ EG P ++IGYR A+ YL G + E
Sbjct: 215 MV--AAGLIEETHNLIKEGYSPKLKP-LQSIGYRHALLYLY------GKVTLPEMMRI-- 263
Query: 243 EFQKASRNFAKRQLTWFRNERIYHWLNA-ARPLENVLNYII 282
FQ+ +R+FAKRQLTWFR + W + + L N+L +I
Sbjct: 264 -FQRDTRHFAKRQLTWFRRDPRVVWYDTYSGNLTNILESLI 303
>sp|Q5L530|MIAA_CHLAB tRNA dimethylallyltransferase OS=Chlamydophila abortus (strain
S26/3) GN=miaA PE=3 SV=2
Length = 342
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 43/266 (16%)
Query: 5 HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
H+ ++ F+ A A +++L + +VPI+ GGTG Y F+ G P P SP+ +
Sbjct: 96 HVQELFNAVDFYYQAIQACQNILSRNKVPILVGGTGFYFHTFLSGPPQGP--SPD--CDF 151
Query: 65 NSELAD-LQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQI 122
+LA +Q G +K DP+ AR++ ND ++ R+LEII TG S
Sbjct: 152 RDKLALYIQEHGLSLLYENLCLK--DPEYARTITKNDRNKIVRALEIIHLTGKKVS---- 205
Query: 123 PYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCED 182
DH + + +S +Y+ +FLS + L +I LRC+
Sbjct: 206 --------------DHKWTKEASECQ--------EYNCRGWFLSPPKELLRDTIHLRCQR 243
Query: 183 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 242
ML D ++ E LL +G+ NS SA+RAIGYR+ +E++ QG + + E A
Sbjct: 244 ML--EDDLIDEVHRLLKQGIRDNS-SASRAIGYREWIEFI----DQGSPAESYE--AVKQ 294
Query: 243 EFQKASRNFAKRQLTWFRNERIYHWL 268
+F + ++ K+Q TWF+ I+ L
Sbjct: 295 KFITNTCHYTKKQRTWFKRYPIFREL 320
>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT)
GN=miaA PE=3 SV=1
Length = 314
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 42/260 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+SV +F E +++A KD+ +G++P++ GGTG Y+ I+ E E L
Sbjct: 72 FSVAEFKEKSKNAIKDIASRGKLPMIVGGTGFYIDSLIFNYDFANTYKDE---EYREHLK 128
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
+L + E + + + L ND R+ R+LE+ K TG S F D F
Sbjct: 129 NLASEHGKEYVHELLKDIDEVSYKKLYPNDLKRVIRALEVFKLTGKTISEFNKEQDIF-- 186
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
D+ Y+ F L+ R LY I+ R + M+ G
Sbjct: 187 -------------------------DIPYNVYYFVLNMDRSKLYERINKRVDIMM--EKG 219
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
++ E L + G P+ S + IGY++ + YL G S E + +K SR
Sbjct: 220 LIEEVKSLQNMGCTPDMQS-MKGIGYKEILYYL------DGKLSLDEAVELI---KKGSR 269
Query: 250 NFAKRQLTWFRNERIYHWLN 269
++AKRQLTWFR + +W++
Sbjct: 270 HYAKRQLTWFRKDNRVNWID 289
>sp|Q3A503|MIAA1_PELCD tRNA dimethylallyltransferase 1 OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=miaA1 PE=3 SV=1
Length = 314
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 45/273 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++ G F R A D+L + R+PIV GGTGLY++ ++G DVP E+ A +
Sbjct: 79 FTAGNFCRLGRQALNDILGRNRLPIVVGGTGLYIQALLHGLIDVPDGDSELRATL-LRAE 137
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
L +G Y ++ V DP A+ L ND R+ R LE+ Y+
Sbjct: 138 QLHGEGTLYQRLQIV----DPVLAKRLPPNDLVRIVRGLEV--------------YELCN 179
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
+ +H+ +++ Y + L+ R LY I+ R ML D
Sbjct: 180 RRLSDLQAEHAGQKSP-------------YRVLTLGLTMSREALYERINHRVWRML--ED 224
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G+ E +LL G A + IGYR+ ++++L G S E + Q+ +
Sbjct: 225 GLAQEVEFLLKRGYAAECK-AMQTIGYRELVQHVL------GNLSMDEAVRLI---QRDT 274
Query: 249 RNFAKRQLTWFRNERIYHWLNAARPLENVLNYI 281
R +AKRQLTWF WL++ VL I
Sbjct: 275 RRYAKRQLTWFNKVNSIIWLDSFGEFAKVLKLI 307
>sp|B2UBL0|MIAA_RALPJ tRNA dimethylallyltransferase OS=Ralstonia pickettii (strain 12J)
GN=miaA PE=3 SV=1
Length = 325
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 119/269 (44%), Gaps = 45/269 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F DA + +G++P++ GGT LY + G D+P A P I AE+++E A
Sbjct: 78 YSAAQFANDANALIDAIRARGKLPLIVGGTMLYYKALTQGLSDLPGADPAIRAEIDAEAA 137
Query: 70 DLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAF---QIPYD 125
RDG + A+ + DP A L D R++R+LE+ + TG P SA ++ +
Sbjct: 138 ---RDG--WPALHAKLALVDPVTAARLHTTDAQRIQRALELYRLTGQPMSALLAREVGAN 192
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDML 184
+F++H D ++ L S RL L+ I R + ML
Sbjct: 193 AFQQH------------------------DAAAPYLTIALEPSDRLVLHARIAQRFDAML 228
Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF 244
G G+L E L G L + + R +GYRQA YL + A +
Sbjct: 229 AG--GLLDEVEGLRRRGDLSPTLPSIRCVGYRQAWAYL---------EGEIDMAALREQG 277
Query: 245 QKASRNFAKRQLTWFRNERIYHWLNAARP 273
A+R KRQ+TW R+ H ++ P
Sbjct: 278 IAATRQLCKRQITWLRSTPERHVVDCLAP 306
>sp|Q3KIZ0|MIAA_PSEPF tRNA dimethylallyltransferase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=miaA PE=3 SV=1
Length = 323
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 43/267 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS F DA A ++ +G++P++ GGT LY + I G D+P A PE+ A++ E A
Sbjct: 74 YSAADFRRDALEAMAEITARGKIPLLVGGTMLYYKALIEGLADMPAADPEVRAQIEEEAA 133
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
L + A+ + A DP+ A + ND RL R+LE+ + +G + ++ +
Sbjct: 134 RLG-----WQALHDQLAAIDPESAARIHPNDPQRLSRALEVYRVSGQSMTELRL-----K 183
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
+ S+E A+ + + L Y ++ ++R L+ I R +ML
Sbjct: 184 QSVQSTE------------AAASGLQQLPYTVANLAIAPTNRQVLHERIKQRFTNML--E 229
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQK- 246
G + E L + L + RA+GYRQ ++L G +S AE Q+
Sbjct: 230 QGFIDEVVALRNRSDLHAGLPSIRAVGYRQVWDFL-----DGKLTS--------AEMQER 276
Query: 247 ---ASRNFAKRQLTWFRNERIYHWLNA 270
A+R AKRQ TW R+ + HWL++
Sbjct: 277 GIIATRQLAKRQFTWLRSWKDLHWLDS 303
>sp|B3E5Z1|MIAA1_GEOLS tRNA dimethylallyltransferase 1 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=miaA1 PE=3 SV=1
Length = 305
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 43/241 (17%)
Query: 28 KKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKA 87
++G+ PI+ GGTGLYLR + G D P P + + L + +G E
Sbjct: 90 QRGKRPILAGGTGLYLRALLRGLNDAPGEDPVLRETLRKRL---ECEGAETLLAELAKVD 146
Query: 88 GDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAG 147
D R L N+ R+ R+LE+ ++TG P S FQ +H +
Sbjct: 147 PDTSQR-LHPNNRNRIIRALEVFQTTGIPLSQFQ--------------AEHGF------- 184
Query: 148 ASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSN 207
D YD + F L R +LY+ ID R + ML + G+++E LL G+ P
Sbjct: 185 ------ADSPYDSLQFCLDLPRPELYQRIDDRVDAML--AAGLVAEVQGLLQSGV-PADC 235
Query: 208 SATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHW 267
+AIGY++ + +L G E + ++ +R+FAKRQLTWFR+E W
Sbjct: 236 KPLQAIGYKEVLAHL------QGEYDHNEMVRLI---KRNTRHFAKRQLTWFRSEPAMQW 286
Query: 268 L 268
+
Sbjct: 287 V 287
>sp|Q3ACA8|MIAA_CARHZ tRNA dimethylallyltransferase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=miaA PE=3 SV=1
Length = 311
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 48/277 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKP-DVPKASPEIIAEVNSEL 68
YSV F ++AR K++ ++G++PI+ GGTGLY+R I P D S + + E
Sbjct: 72 YSVALFQKEARRLIKEINERGKIPIIVGGTGLYIRSVI--DPYDFTDFSFDPVFRGKLEQ 129
Query: 69 ADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSF 127
A ++ + + +++ DP A+ + +ND R+ R+LE+ + TG P S +
Sbjct: 130 AAKEKGSSY---LHQMLEKIDPVAAQKIHSNDLRRIIRALEVYEHTGKPISYY------- 179
Query: 128 REHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGS 187
+ER + P+ Y + + L+ R LY+ I+ R + M+
Sbjct: 180 ------------WERGKQ-----SKPQ---YRLLYYGLTMDRALLYQRINERVDKMI--E 217
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
G+++E LL G ++A +A+GY++ ++YL +G + Y ++
Sbjct: 218 KGLIAEVKRLLQMGF--KESTAMQALGYKEIVQYL-----EGKITLDEAIYLI----KRD 266
Query: 248 SRNFAKRQLTWFRNERIYHWLNAARP-LENVLNYIIT 283
+R FAKRQLTWFR + W ++ + LE + IIT
Sbjct: 267 TRRFAKRQLTWFRRDPRIKWFDSGKESLEKITEKIIT 303
>sp|Q128B6|MIAA_POLSJ tRNA dimethylallyltransferase OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=miaA PE=3 SV=1
Length = 333
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 33/255 (12%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F DA+ D+ +G++P++ GGT LY + YG D+PKA P + AE+ SE A
Sbjct: 78 YSAAEFVADAQRLIDDIAARGKLPLLVGGTMLYFKALFYGLDDMPKADPAVRAELASEAA 137
Query: 70 DLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ A+ + DP A LA +D R+ R+LE+ + +G P S F
Sbjct: 138 -----AKGWPALHAELATVDPVTAARLAPHDSQRISRALEVFRVSGQPLSFF-------- 184
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
+++N++ +D ++ + + R L+ I R + ML +
Sbjct: 185 -----------HQQNAAKTIADDG-REERTEILISLEPQERSWLHHRIAERFDAML--AA 230
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYL--LRCRQQGGTSSTGEFYAFLAEFQK 246
G + E L G L + R +GYRQA E L R GG+ E +
Sbjct: 231 GFVEEVKTLRARGDLTPDLPSMRCVGYRQAWELLDAQEARSPGGSFPMDELR---DKGII 287
Query: 247 ASRNFAKRQLTWFRN 261
A+R AKRQ+TW R+
Sbjct: 288 ATRQLAKRQVTWLRS 302
>sp|B2VAE4|MIAA_SULSY tRNA dimethylallyltransferase OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=miaA PE=3 SV=1
Length = 307
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 60/287 (20%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS----PEIIAEVN 65
YSV + ED A + + +KG++PIV GGT LY++ +YG D P++ ++ + VN
Sbjct: 68 YSVKDYIEDFDKAVQKIREKGKIPIVVGGTWLYIQGALYGLSDAPESDWTLREKLYSLVN 127
Query: 66 SELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
EL Y ++ V DP+ A + ND R+ R+LE+ TG P S F
Sbjct: 128 LEL---------YTQLQKV----DPEYANKIHVNDKRRIVRALEVYYLTGKPFSFF---- 170
Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDML 184
+H N K Y+F+ F L R +L I++R E M
Sbjct: 171 --INQH---------------------NFKSKRYNFLGFILERDRQELMDRIEIRVEKMF 207
Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYL-LRCRQQGGTSSTGEFYAFLAE 243
G++ E L+D G +S ++ +AIGY++ + YL + + E
Sbjct: 208 --EKGLVEEVKKLVDMG-FKDSLTSMQAIGYKEILPYLDKKISLEDAKKCIIE------- 257
Query: 244 FQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIITAYHDST 289
+++FAKRQ+ FRN+ + + A++ + +L+YI Y+
Sbjct: 258 ---NTKDFAKRQIRTFRNKTDFEKIEASKFEVNEMLDYIYRKYNQEV 301
>sp|B8FWE4|MIAA_DESHD tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain DCB-2 / DSM 10664) GN=miaA PE=3 SV=1
Length = 314
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 123/281 (43%), Gaps = 56/281 (19%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE-- 67
++V +F A + +++ +G+VPIV GGTGLY+R I P AE SE
Sbjct: 71 FTVAQFQTLANQSIQNIQSRGKVPIVVGGTGLYIRSLI---------DPFQFAEHGSESI 121
Query: 68 ----LADLQRDGDWYAAVEFVVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAFQI 122
A L G E + DP A+ L ND R+ R+LE+ + TG P S +
Sbjct: 122 RSFWTAFLSEQGKEALHRELAKR--DPLSAQRLHPNDTVRIIRALEMCQLTGKPFSEIR- 178
Query: 123 PYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCED 182
G D N L + L++ R +Y I+ RCE
Sbjct: 179 ------------------------GNQDMNYPPLPPSLLYVGLTAPREIIYERINRRCEQ 214
Query: 183 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 242
M+ + G++ E L+ EG P ++IGYR A+ YL G + E
Sbjct: 215 MV--AAGLIEETHNLIKEGYSPKLKP-LQSIGYRHALLYLY------GKVTLPEMMRI-- 263
Query: 243 EFQKASRNFAKRQLTWFRNERIYHWLNA-ARPLENVLNYII 282
FQ+ +R+FAKRQLTWFR + W + + L N+L +I
Sbjct: 264 -FQRDTRHFAKRQLTWFRRDPRVVWYDTYSGNLTNILESLI 303
>sp|Q39TZ3|MIAA_GEOMG tRNA dimethylallyltransferase OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=miaA PE=3 SV=1
Length = 309
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 45/278 (16%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++ F E A A D+ ++G+ I+ GGTGLY+R G ASP + EL
Sbjct: 76 FTAADFREHASRAIADIERRGKRVILVGGTGLYIRILTQGLV----ASPGGDDNIRRELE 131
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
D Q G+ ++ + A DP A + L ND R+ R+LE+ TG P SAFQ
Sbjct: 132 D-QAHGEGLESLHRRLAAVDPVAAARLHPNDGVRIVRALEVFLLTGRPLSAFQ------- 183
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
H + D Y + ++ R LYR ++ R + M+ ++
Sbjct: 184 -------EAHRF-------------ADEPYRCLKLGITVERELLYRRVEERVDRMI--AE 221
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E LL G P + A +IGYR+ C G S E + ++ +
Sbjct: 222 GLVEEVRGLLSAGY-PATLKAMGSIGYREI------CAHLAGEFSLDEAMRLI---KQNT 271
Query: 249 RNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYH 286
R +AKRQ+TWFR + W+ +++L+ ++ YH
Sbjct: 272 RQYAKRQMTWFRRDSEIIWVEYPGKFDSILSTVMGFYH 309
>sp|A7GR71|MIAA_BACCN tRNA dimethylallyltransferase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=miaA PE=3 SV=1
Length = 316
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 54/278 (19%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+SV +F E R +++ K+G++PI+ GGTGLY++ +Y +A E +LA
Sbjct: 76 FSVAEFQELVRGHIREITKRGKLPIIVGGTGLYIQSVLYDYQFTDEAGDTAYRERMEKLA 135
Query: 70 DLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYD 125
+ Q VEFV ++ DP+ A+ + AN+ R+ R+LEI ++TG S
Sbjct: 136 EEQ-------GVEFVHKKLEEVDPESAKRIHANNVRRVIRALEIFQTTGKKMSE------ 182
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLP 185
+ +L YD + L+ R LY I+LR + M+
Sbjct: 183 ----------------------QLEKQKNELLYDVVLIGLTMDRTMLYDRINLRVDLMM- 219
Query: 186 GSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQ 245
G+ E L G+ + +AIGY++ Y G +S E +++ +
Sbjct: 220 -EQGLEQEVKRLYQNGV--RDCQSIQAIGYKELYRYF------AGATSLEEA---ISQLK 267
Query: 246 KASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 281
SR +AKRQLTWFRN+ W + +L YI
Sbjct: 268 TNSRRYAKRQLTWFRNKMDVAWFDVTDGEKTAEILRYI 305
>sp|C1FNT7|MIAA_CLOBJ tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=miaA PE=3 SV=1
Length = 311
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 127/281 (45%), Gaps = 44/281 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F A + KD+ KG++PI+ GGTGLY+ IY E E ++LA
Sbjct: 71 FNVSSFKALAEKSIKDIWNKGKLPIIVGGTGLYINSLIYNYDFTDADRDEKYREYLTKLA 130
Query: 70 DLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ G Y V ++K D ++ L ND R+ R+LE+ K TG S
Sbjct: 131 --EDKGKEY--VHSLLKDIDEESYEKLYPNDLKRVVRALEVYKITGK----------SIS 176
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
E++ +E D+ Y+ F L+ +R LY I+ R + M+ S
Sbjct: 177 EYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVDIMM--SK 219
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E L G P+ S + IGY++ + YL G S Y +K S
Sbjct: 220 GLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL----IKKGS 269
Query: 249 RNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 287
RN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 270 RNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDKIIKMVKD 310
>sp|A9KL08|MIAA_CLOPH tRNA dimethylallyltransferase OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=miaA PE=3
SV=1
Length = 313
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 50/264 (18%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V KF + A+ A +++ KG+VPI+ GGTG Y++ + D+ + EL
Sbjct: 71 FNVVKFKDCAKEAIREIYSKGKVPIIVGGTGFYIQAVL---KDIDFTENDSDTPYRKELE 127
Query: 70 DL-QRDGDWYAAVEF--VVKAGDP-KARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYD 125
+L Q +G A++ ++K DP A ++ N+ R R++E K TG P S
Sbjct: 128 ELAQTEG----AIKLHDILKQCDPVAAEAIHPNNIKRTIRAIEYFKLTGEPIS------- 176
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLP 185
+H++ + S Y + F L++ R LY +IDLR + ML
Sbjct: 177 ---KHNEEQRGNES-----------------PYQYAYFVLNNDREILYENIDLRVDKMLD 216
Query: 186 GSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQ 245
G++ E WL ++G S + + +GY++ YL +G S Y +
Sbjct: 217 A--GLVKEVLWLKEQG-YDRSLVSMQGLGYKEIYAYL-----EGECSLEETVYL----LK 264
Query: 246 KASRNFAKRQLTWFRNERIYHWLN 269
+ +R+FAKRQLTWF+ E+ WL+
Sbjct: 265 RDTRHFAKRQLTWFKREQDVIWLS 288
>sp|A4X4W1|MIAA_SALTO tRNA dimethylallyltransferase OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=miaA PE=3 SV=1
Length = 319
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 49/262 (18%)
Query: 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELAD 70
SV ++ AR A D+L +GRVP++ GG+GLYLR + + + P P + + +ELA
Sbjct: 89 SVAEYQRLARAAVDDILARGRVPLLVGGSGLYLR-AVLERFEFPGTDPVLRQRLEAELAQ 147
Query: 71 LQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
AA+ ++A DP A + + + R+ R+LE+++ TG+P +A +P S
Sbjct: 148 AG-----PAALHERLRAVDPDAAANILPGNGRRIVRALEVVELTGAPFTA-ALPDPS--- 198
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
Y R+ G DLD + RLD I LR + M +DG
Sbjct: 199 ---------PYYRSVQVGV------DLD---------TARLD--ERIALRVDRMW--ADG 230
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
+++E L D+G L +A+RA+GY+Q + +L G + E Y E +A+R
Sbjct: 231 LVAETRLLADQG-LAEGRTASRALGYQQVLRFL------AGELTESEAY---QETIRATR 280
Query: 250 NFAKRQLTWFRNERIYHWLNAA 271
F +RQ +WFR + WL++A
Sbjct: 281 RFVRRQRSWFRRDPRITWLDSA 302
>sp|Q8XWB0|MIAA_RALSO tRNA dimethylallyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=miaA PE=3 SV=1
Length = 323
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 126/287 (43%), Gaps = 51/287 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F DA+ + + +GR+P++ GGT LY + G D+P A P I AE+++E A
Sbjct: 78 YSAAQFATDAQALIEAIRARGRLPLIVGGTMLYYKALTQGLSDLPGADPAIRAEIDAEAA 137
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
RDG W A + + A L A D R++R+LE+ + TG P SA RE
Sbjct: 138 ---RDG-WPALHAKLAQVDPVTAARLHATDAQRIQRALELYRLTGQPMSALL-----ARE 188
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGSD 188
+ ++ R+ +A A ++ L + R L+ I R + ML G
Sbjct: 189 AGAA-----AFHRHEAAAA-----------YLSIALEPADRAVLHARIAQRFDAMLAG-- 230
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF-YAFLAEFQ-K 246
G+L E L G L + R +GYRQA YL GE A L E
Sbjct: 231 GLLDEVEALRRRGDLSPVLPSIRCVGYRQAWAYL-----------DGEIDMATLREQGIA 279
Query: 247 ASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLV 293
A+R KRQ+TW R+ P V++ + Y D LV
Sbjct: 280 ATRQLCKRQITWLRST----------PERRVVDCLAPDYVDQVARLV 316
>sp|A0LZ43|MIAA_GRAFK tRNA dimethylallyltransferase OS=Gramella forsetii (strain KT0803)
GN=miaA PE=3 SV=1
Length = 302
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 51/274 (18%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YSVG F +DA K++ K +V ++ GG+GLY++ G D PK PEI +N L
Sbjct: 72 YSVGDFEKDAILKLKELFNKHKVAVMVGGSGLYIKAITEGLDDFPKVDPEIRRNLNQHL- 130
Query: 70 DLQRDG-DWYAAVEFVVKAGDPKARSLA-ANDWYRLRRSLEIIKSTGSPPSAFQIPYDSF 127
+ DG DW +V+ DP+ A + +RL R+LEI TG P S+F
Sbjct: 131 --EEDGIDWLQKKLYVL---DPEYYKTADVMNPHRLIRALEICIETGKPFSSFL------ 179
Query: 128 REHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGS 187
ERN + + L + R +Y I+ R + M+
Sbjct: 180 --------NQKKPERN--------------FKNITIGLMADREMIYDRINKRVDLMI--R 215
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+G++ EA L + L +A +GY++ + G T + ++E +K
Sbjct: 216 NGLIEEARELYPQKEL----NALNTVGYKELFSFF-----DGKT----DLETAISEIKKN 262
Query: 248 SRNFAKRQLTWFRNERIYHWLNAARPLENVLNYI 281
+R FAKRQLTWFR + W +N+ +YI
Sbjct: 263 TRRFAKRQLTWFRKDPEIKWFEFDENSKNIFDYI 296
>sp|Q65JA9|MIAA_BACLD tRNA dimethylallyltransferase OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=miaA PE=3 SV=1
Length = 314
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 48/267 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKAS-PEIIAEVNSEL 68
+SV ++ E R ++ ++G++P++ GGTGLY++ +Y +A PE AE+ +
Sbjct: 75 FSVAEYQEIVRQKIAEIDRRGKLPMIVGGTGLYIQSVLYDYSFTEEAGDPEFRAEMEAFS 134
Query: 69 ADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSF 127
A +R ++ V ++K DP+ AR++ N+ R+ R+LEI+ +TG +
Sbjct: 135 A--KRGAEY---VHDLLKERDPEAARAIHPNNKRRVIRALEILHTTGK----------TM 179
Query: 128 REHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGS 187
EH + K+L Y L+ R LY I+ R + M+
Sbjct: 180 SEHMEGQR------------------KELLYTTALIGLTMEREVLYDRINSRVDQMM--D 219
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+G+L E L DE + + + +AIGY++ +L G +S E L ++
Sbjct: 220 EGLLDEVKLLYDENV--RNCQSVQAIGYKELYAHL------EGRASLEEAVETL---KRN 268
Query: 248 SRNFAKRQLTWFRNERIYHWLNAARPL 274
SR +AKRQLTWFRN+ W + P+
Sbjct: 269 SRRYAKRQLTWFRNQMDVAWFDMTPPV 295
>sp|Q812Y4|MIAA_BACCR tRNA dimethylallyltransferase OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=miaA PE=3 SV=1
Length = 317
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 54/278 (19%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+SV +F E R +++ ++G++PI+ GGTGLY++ ++ A I E +LA
Sbjct: 76 FSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTDDAGDVIYREQREKLA 135
Query: 70 DLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYD 125
L+R VE+V ++ DP+ A + AN+ R+ R+LEI +TG S QI
Sbjct: 136 -LER------GVEYVHEKLQEVDPESAERIHANNVRRVIRALEIFHTTGEKMSE-QI--- 184
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLP 185
+ K+L YD L+ R LY I+LR + M+
Sbjct: 185 ------------------------EKQEKELLYDVSLIGLTMDREMLYDRINLRVDLMM- 219
Query: 186 GSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQ 245
G+L E L + G+ + +AIGY++ +Y + +++ +
Sbjct: 220 -EQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF---------ENRASLEDAVSQLK 267
Query: 246 KASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 281
SR +AKRQLTWFRN+ W + +L YI
Sbjct: 268 TNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|B3R6B8|MIAA_CUPTR tRNA dimethylallyltransferase OS=Cupriavidus taiwanensis (strain R1
/ LMG 19424) GN=miaA PE=3 SV=1
Length = 322
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 106/252 (42%), Gaps = 36/252 (14%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F DA ++ +G VP++ GGT LY + G D+P+A A + +EL
Sbjct: 81 YSAAQFVADAERLIGEIHARGHVPLIVGGTMLYYKALTQGLNDLPQAD----AALRAELD 136
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
L + W A + + A LA ND R++R+LEI + +G P SA
Sbjct: 137 QLAAERGWPALHAMLAEVDPVTAARLAPNDAQRIQRALEIHRLSGQPMSAL--------- 187
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
E + AGA+D + + + S RL L+ I R + ML + G
Sbjct: 188 ------LARQAEGRTFAGAADQRYRVIALE------PSDRLALHHRIARRYDAML--AQG 233
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
+ E L G L + R +GYRQ EYL +F A+R
Sbjct: 234 FIDEVERLRARGDLHPGLPSIRCVGYRQVWEYL---------DGEADFATMRERGIAATR 284
Query: 250 NFAKRQLTWFRN 261
KRQLTW R+
Sbjct: 285 QLCKRQLTWLRS 296
>sp|Q0K776|MIAA_CUPNH tRNA dimethylallyltransferase OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=miaA PE=3 SV=1
Length = 322
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 105/253 (41%), Gaps = 38/253 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F DA + +G VP++ GGT LY + G D+P+A A + +EL
Sbjct: 81 YSAAQFVTDAERLIAQIRARGHVPLIVGGTMLYYKALTQGLNDLPQAD----AALRAELD 136
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
L + W A + + A LA ND R++R+LEI + +G P SA
Sbjct: 137 QLAAERGWPALHAMLAEVDPVTAARLAPNDAQRIQRALEIHRLSGQPMSAL--------- 187
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGSD 188
E + AGA+D F L S RL L+ I R + ML ++
Sbjct: 188 ------LARQAEGRTFAGAADQR-------FRVIALEPSDRLALHARIAQRYDAML--AN 232
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G + E L G L + R +GYRQ EYL +F A+
Sbjct: 233 GFIEEVERLRRRGDLHPGLPSIRCVGYRQVWEYL---------DGDADFATMRERGIAAT 283
Query: 249 RNFAKRQLTWFRN 261
R KRQLTW R+
Sbjct: 284 RQLCKRQLTWLRS 296
>sp|B1IM66|MIAA_CLOBK tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Okra
/ Type B1) GN=miaA PE=3 SV=1
Length = 311
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 44/281 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F + A + KD+ +G++PI+ GGTGLY+ IY E E ++LA
Sbjct: 71 FNVSSFKDLAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYREYLTKLA 130
Query: 70 DLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ G+ Y V ++K D ++ L ND R+ R+LE+ K TG S +
Sbjct: 131 --EDKGNEY--VHSLLKDIDEESYEKLYPNDLKRVVRALEVYKITGKSISEY-------- 178
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
++ D+ Y+ F L+ +R LY I+ R + M+
Sbjct: 179 -----------------IKENEKKLYDIPYNVNYFILNMNREVLYERINKRVDIMM--GK 219
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E L G P+ S + IGY++ + YL G S Y +K S
Sbjct: 220 GLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYLI----KKGS 269
Query: 249 RNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 287
RN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 270 RNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDKIIKMVKD 310
>sp|B6J017|MIAA_COXB2 tRNA dimethylallyltransferase OS=Coxiella burnetii (strain
CbuG_Q212) GN=miaA PE=3 SV=1
Length = 301
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS G+F++DA K + + R P++ GGT LY G D+P A + ++ E A
Sbjct: 64 YSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKKIQEEAA 123
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+A + + A DPK A + ND R++R+ E+ ++TG P S++Q
Sbjct: 124 Q-----HGWAKIHERLNAIDPKSAARINPNDAQRIQRAFEVYETTGQPLSSYQ------- 171
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
S K L Y F+ L+ +R L++ I+ R + ML
Sbjct: 172 --------------------SLKRFKALPYQFINLILAPENRSWLHQRIEKRFDQML--K 209
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+ L E L + G L + A R +GYRQ +YL S ++ + A
Sbjct: 210 NNFLEEVRQLYNRGDLNSDLPAIRTVGYRQVWKYL---------SGEYDYETMRHKAIAA 260
Query: 248 SRNFAKRQLTWFRNERIYHWLNA 270
+R AKRQLTW R W N+
Sbjct: 261 TRQLAKRQLTWLRRWPDAKWFNS 283
>sp|B6J7C0|MIAA_COXB1 tRNA dimethylallyltransferase OS=Coxiella burnetii (strain
CbuK_Q154) GN=miaA PE=3 SV=1
Length = 301
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS G+F++DA K + + R P++ GGT LY G D+P A + ++ E A
Sbjct: 64 YSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKKIQEEAA 123
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+A + + A DPK A + ND R++R+ E+ ++TG P S++Q
Sbjct: 124 Q-----HGWAKIHERLNAIDPKSAARINPNDAQRIQRAFEVYETTGQPLSSYQ------- 171
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
S K L Y F+ L+ +R L++ I+ R + ML
Sbjct: 172 --------------------SLKRFKALPYQFINLILAPENRSWLHQRIEKRFDQML--K 209
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+ L E L + G L + A R +GYRQ +YL S ++ + A
Sbjct: 210 NNFLEEVRQLYNRGDLNSDLPAIRTVGYRQVWKYL---------SGEYDYETMRHKAIAA 260
Query: 248 SRNFAKRQLTWFRNERIYHWLNA 270
+R AKRQLTW R W N+
Sbjct: 261 TRQLAKRQLTWLRRWPDAKWFNS 283
>sp|A9NCK4|MIAA_COXBR tRNA dimethylallyltransferase OS=Coxiella burnetii (strain RSA 331
/ Henzerling II) GN=miaA PE=3 SV=1
Length = 311
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS G+F++DA K + + R P++ GGT LY G D+P A + ++ E A
Sbjct: 74 YSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKKIQEEAA 133
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+A + + A DPK A + ND R++R+ EI ++TG P S++Q
Sbjct: 134 Q-----HGWAKIHERLNAIDPKSAARINPNDAQRIQRAFEIYETTGQPLSSYQ------- 181
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
S K L Y F+ L+ +R L++ I+ R + ML
Sbjct: 182 --------------------SLKRFKALPYQFINLILAPENRSWLHQRIEKRFDQML--K 219
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+ L E L + G L + A R +GYRQ +YL S ++ + A
Sbjct: 220 NNFLEEVRQLYNRGDLNSDLPAIRTVGYRQVWKYL---------SGEYDYEMMRHKAIAA 270
Query: 248 SRNFAKRQLTWFRNERIYHWLNA 270
+R AKRQLTW R W N+
Sbjct: 271 TRQLAKRQLTWLRRWPDAKWFNS 293
>sp|B9M3M9|MIAA2_GEOSF tRNA dimethylallyltransferase 2 OS=Geobacter sp. (strain FRC-32)
GN=miaA2 PE=3 SV=1
Length = 326
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 43/276 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+S F A A D+ +G+ + GGTGLY+R + G D P +I E+N
Sbjct: 76 FSASDFRRAADGAIADIHSRGKRVFIVGGTGLYIRALLQGLVDSPSGDEQIRGELNELAK 135
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
++ +G ++ + + A L ND R+ R+LE+ + TG P S F+ +E
Sbjct: 136 EIGNEG----LLQLLAEVDPITAERLHHNDRVRIIRALEVYRQTGRPMSQFR------QE 185
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
H + E YD + ++ R +LY ++ R ++M+ G
Sbjct: 186 HGFAEEM---------------------YDCLMLGINVERQELYSRVEKRVDEMV--ESG 222
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
+ +E L G + A R+IGY++ +L G S + + ++ +R
Sbjct: 223 LAAEVEELFRLGYARDLK-AMRSIGYKEICSFL------SGEISLDQAVQLI---KRDTR 272
Query: 250 NFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAY 285
+AKRQ+TWF E W+ N+ N++I +
Sbjct: 273 RYAKRQMTWFNKEYGIKWVEYPAAFANICNHVIEFF 308
>sp|A5I2S0|MIAA_CLOBH tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Hall
/ ATCC 3502 / NCTC 13319 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 44/281 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F A + KD+ +G++PI+ GGTGLY+ IY E E ++LA
Sbjct: 71 FNVSSFKALAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYREYLTKLA 130
Query: 70 DLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ G Y V ++K D ++ L ND R+ R+LE+ K TG S
Sbjct: 131 --EDKGKEY--VHSLLKDIDKESYEKLYPNDLKRVVRALEVYKITGK----------SIS 176
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
E++ +E D+ Y+ F L+ +R LY I+ R + M+
Sbjct: 177 EYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVDIMM--GK 219
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E L G P+ S + IGY++ + YL G S Y +K S
Sbjct: 220 GLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL----IKKGS 269
Query: 249 RNFAKRQLTWFRNERIYHWLNAA--RPLENVLNYIITAYHD 287
RN+AKRQLTWFR ++ W++ R E +++ II D
Sbjct: 270 RNYAKRQLTWFRKDKRSIWIDKDKYRSEEEIVDKIIKMVKD 310
>sp|A7FUK8|MIAA_CLOB1 tRNA dimethylallyltransferase OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=miaA PE=3 SV=1
Length = 311
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 44/281 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F A + KD+ +G++PI+ GGTGLY+ IY E E ++LA
Sbjct: 71 FNVSSFKALAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYREYLTKLA 130
Query: 70 DLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ G Y V ++K D ++ L ND R+ R+LE+ K TG S
Sbjct: 131 --EDKGKEY--VHSLLKDIDKESYEKLYPNDLKRVVRALEVYKITGK----------SIS 176
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
E++ +E D+ Y+ F L+ +R LY I+ R + M+
Sbjct: 177 EYTKENE---------------KKLYDIPYNVNYFILNMNREVLYERINKRVDIMM--GK 219
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E L G P+ S + IGY++ + YL G S Y +K S
Sbjct: 220 GLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL----IKKGS 269
Query: 249 RNFAKRQLTWFRNERIYHWLNAA--RPLENVLNYIITAYHD 287
RN+AKRQLTWFR ++ W++ R E +++ II D
Sbjct: 270 RNYAKRQLTWFRKDKRSIWIDKDKYRSEEEIVDKIIKMVKD 310
>sp|Q92C59|MIAA_LISIN tRNA dimethylallyltransferase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=miaA PE=3 SV=1
Length = 305
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 114/267 (42%), Gaps = 58/267 (21%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIY----GKPDVPKASPEIIAEVN 65
++ KF + R + + +G++PI+ GGTGLY++ Y G KA
Sbjct: 73 FTAAKFQAETRGLIESIHNRGKLPIIVGGTGLYIQSVFYDYGFGNASEDKA-------YR 125
Query: 66 SELADLQRDGDWYAAVEFVVKAGDPKARSLA-ANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
EL L + W + DPK+ L N+ R+ R+LE+I TG P S +Q+
Sbjct: 126 RELDQLDKTTLWQMLDQL-----DPKSAELIHENNKRRVIRALEVIHLTGKPFSEYQV-- 178
Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDML 184
H +E Y + L R LY I+ R E M
Sbjct: 179 -----HHTLNEA---------------------YQPLFLGLDLDRELLYERINRRVELMF 212
Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF 244
+G++SEA+ L DE L+ A R IGY++ Y G SS E +
Sbjct: 213 --EEGLVSEASKLYDEHLV--DVPAIRGIGYKELFTYF------DGNSSLEEAKELI--- 259
Query: 245 QKASRNFAKRQLTWFRNERIYHWLNAA 271
QK SR+FAKRQLTWFRN W+ A
Sbjct: 260 QKNSRHFAKRQLTWFRNRMDIDWIQAG 286
>sp|B7ISQ9|MIAA_BACC2 tRNA dimethylallyltransferase OS=Bacillus cereus (strain G9842)
GN=miaA PE=3 SV=1
Length = 317
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 54/278 (19%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
+SV +F E R +++ ++G++PI+ GGTGLY++ ++ A I E +LA
Sbjct: 76 FSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFDYQFTDDAGDVIYREQMEKLA 135
Query: 70 DLQRDGDWYAAVEFV---VKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYD 125
L+R VE+V ++ DP+ A + AN+ R+ R+LEI +TG S QI
Sbjct: 136 -LER------GVEYVHKKLQEVDPESAERIHANNVRRVIRALEIFHTTGEKMSD-QI--- 184
Query: 126 SFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLP 185
+ K+L YD L+ R LY I+LR + M+
Sbjct: 185 ------------------------EKQEKELLYDVSLIGLTMDREMLYDRINLRVDLMM- 219
Query: 186 GSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQ 245
G+L E L + G+ + +AIGY++ +Y + +++ +
Sbjct: 220 -EQGLLEEVEGLYNRGI--RDCQSIQAIGYKEIYDYF---------ENRASLEDAVSQLK 267
Query: 246 KASRNFAKRQLTWFRNERIYHWLNA--ARPLENVLNYI 281
SR +AKRQLTWFRN+ W + +L YI
Sbjct: 268 TNSRRYAKRQLTWFRNKMDVTWFDVTDGEKTSEILRYI 305
>sp|Q820W3|MIAA_COXBU tRNA dimethylallyltransferase OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=miaA PE=3 SV=1
Length = 311
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS G+F++DA K + + R P++ GGT LY G D+P A + ++ E A
Sbjct: 74 YSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKKIQEEAA 133
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+A + + A DPK A + ND R++R+ E+ ++TG P S++Q
Sbjct: 134 Q-----HGWAKIHERLNAIDPKSAARINPNDAQRIQRAFEVYETTGQPLSSYQ------- 181
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
S K L Y F+ L+ +R L++ I+ R + ML
Sbjct: 182 --------------------SLKRFKALPYQFINLILAPENRSWLHQRIEKRFDQML--K 219
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+ L E L + G L + A R +GYRQ +YL S ++ + A
Sbjct: 220 NNFLEEVRQLYNRGDLNSDLPAIRTVGYRQVWKYL---------SGEYDYETMRHKAIAA 270
Query: 248 SRNFAKRQLTWFRNERIYHWLNA 270
+R AKRQLTW R W N+
Sbjct: 271 TRQLAKRQLTWLRRWPDAKWFNS 293
>sp|A9KE31|MIAA_COXBN tRNA dimethylallyltransferase OS=Coxiella burnetii (strain Dugway
5J108-111) GN=miaA PE=3 SV=1
Length = 311
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 45/263 (17%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS G+F++DA K + + R P++ GGT LY G D+P A + ++ E A
Sbjct: 74 YSAGQFYKDALSEIKTIEIRNRTPLLVGGTMLYFHILEQGFSDLPTADETVRKKIQEEAA 133
Query: 70 DLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+A + + A DPK A + ND R++R+ E+ ++TG P S++Q
Sbjct: 134 Q-----HGWAKIHERLNAIDPKSAARINPNDAQRIQRAFEVYETTGQPLSSYQ------- 181
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPGS 187
S K L Y F+ L+ +R L++ I+ R + ML
Sbjct: 182 --------------------SLKRFKALPYQFINLILAPENRSWLHQRIEKRFDQML--K 219
Query: 188 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKA 247
+ L E L + G L + A R +GYRQ +YL S ++ + A
Sbjct: 220 NNFLEEVRQLYNRGDLNSDLPAIRTVGYRQVWKYL---------SGEYDYETMRHKAIAA 270
Query: 248 SRNFAKRQLTWFRNERIYHWLNA 270
+R AKRQLTW R W N+
Sbjct: 271 TRQLAKRQLTWLRRWPDAKWFNS 293
>sp|B1KSA1|MIAA_CLOBM tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=miaA PE=3 SV=1
Length = 311
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 44/281 (15%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
++V F A + KD+ +G++PI+ GGTGLY+ IY E E ++LA
Sbjct: 71 FNVSSFKVLAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDFTDADRDEKYREYLTKLA 130
Query: 70 DLQRDGDWYAAVEFVVKAGDPKA-RSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
+ G Y V ++K D K+ L ND R+ R+LE+ K TG S
Sbjct: 131 --EDKGKEY--VHSLLKDIDEKSYEKLYPNDLKRVVRALEVYKITGK----------SIS 176
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
E++ +E D+ Y+ F L+ +R LY I+ R + M+
Sbjct: 177 EYTKENE---------------KKLYDIPYNVNYFVLNMNREVLYERINKRVDIMM--GK 219
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
G++ E L G P+ S + IGY++ + YL G S Y +K S
Sbjct: 220 GLIEEVKKLESMGYTPDMQS-MKGIGYKEVLFYL-----NGDISLDEAIYL----IKKGS 269
Query: 249 RNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAYHD 287
RN+AKRQLTWFR ++ W++ + E +++ II D
Sbjct: 270 RNYAKRQLTWFRKDKRSIWIDKDKYSSEEEIVDEIIKMVKD 310
>sp|Q255V8|MIAA_CHLFF tRNA dimethylallyltransferase OS=Chlamydophila felis (strain
Fe/C-56) GN=miaA PE=3 SV=1
Length = 342
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 43/266 (16%)
Query: 5 HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
H+ ++ F+ A A +++L + +VPI+ GG+G Y F+ G P+ P A E
Sbjct: 96 HVQELFNAVDFYYQATQACQNILSRNKVPILVGGSGFYFHTFLSGPPEGPPAD----REF 151
Query: 65 NSELAD-LQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQI 122
LA +Q++G +K DP+ AR++ ND ++ R+LEII TG S
Sbjct: 152 RDHLALYIQKNGLSLLYDNLCMK--DPEYARTITKNDKNKIVRALEIIHLTGKKVS---- 205
Query: 123 PYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCED 182
EH+ S E E N +FLSS R L +I LRC
Sbjct: 206 ------EHNWSMEAKEPREYNCRG----------------WFLSSPRDLLRDNIQLRCRR 243
Query: 183 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 242
ML D ++ E LL++G+ N SA++AIGYR+ ++++ QG E
Sbjct: 244 ML--EDNLIDEVHRLLEQGIRENP-SASKAIGYREWIDFI----DQGSPKEAYE--DVKN 294
Query: 243 EFQKASRNFAKRQLTWFRNERIYHWL 268
+F + + K+Q TWF+ ++ L
Sbjct: 295 KFIANTLYYIKKQRTWFKRYPMFREL 320
>sp|Q2G626|MIAA_NOVAD tRNA dimethylallyltransferase OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=miaA PE=3 SV=1
Length = 281
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 110/240 (45%), Gaps = 46/240 (19%)
Query: 28 KKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKA 87
++G +PI+ GGTGLY+R + G VP+ P++ EV + + YA +E K+
Sbjct: 68 QRGALPILVGGTGLYIRTLLDGIAPVPEIDPQVREEVRAMPLEAA-----YAELE---KS 119
Query: 88 GDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAG 147
+AR LA D R+ R+LE+++STG P + +Q + S G
Sbjct: 120 DPERARKLAPADAQRITRALEVMRSTGRPLAYWQ--------------------QQLSGG 159
Query: 148 ASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSN 207
+ D L R LYR DLR E M G G L E LL L P+S
Sbjct: 160 IGN------DVALAPLILLPERQWLYRRCDLRFELMWDG--GALEEVEALLARDL-PDSL 210
Query: 208 SATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHW 267
RAIG + +L +G S A +A Q+A+RN+AKRQ TW R++ W
Sbjct: 211 PVMRAIGVPEIAAFL-----RGDLSRD----AAIASGQQATRNYAKRQYTWLRHQNPGDW 261
>sp|A4SZQ9|MIAA_POLSQ tRNA dimethylallyltransferase OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=miaA PE=3 SV=1
Length = 333
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 35/251 (13%)
Query: 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
YS +F +DA+ +D+ +G +P+V GGT LY R + +G +P A+ +I A ++ E
Sbjct: 90 YSAARFAKDAKQLCEDIRSRGNIPVVVGGTMLYWRAWAHGLSSLPPANTDIRARLDEEGK 149
Query: 70 DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
L W A + + A L ND R++R+LE+ + TG P SA
Sbjct: 150 SL----GWPAMHTKLAQIDPETAARLKPNDSQRVQRALEVFEITGKPMSALL-------- 197
Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
+E+ R S N L+ S R L+ +++ R ++ML G G
Sbjct: 198 ----AESPSEDGREGSVIPPWINLVSLE--------PSDRKRLHLNLEKRFDEMLVG--G 243
Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
+L E L L A R++GYRQ EYL G T Y LA A+R
Sbjct: 244 LLEEVKTLKANVALHADLPAIRSVGYRQVWEYL-----DGQTDWEEMRYKSLA----ATR 294
Query: 250 NFAKRQLTWFR 260
KRQLTW R
Sbjct: 295 QLGKRQLTWLR 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,635,017
Number of Sequences: 539616
Number of extensions: 5660303
Number of successful extensions: 16093
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 13753
Number of HSP's gapped (non-prelim): 1419
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)