Query 018647
Match_columns 352
No_of_seqs 155 out of 1089
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02840 tRNA dimethylallyltra 100.0 1.6E-90 3.4E-95 691.4 32.9 339 1-345 81-419 (421)
2 PF01715 IPPT: IPP transferase 100.0 1.9E-66 4E-71 491.2 21.6 225 1-270 27-252 (253)
3 PRK14729 miaA tRNA delta(2)-is 100.0 4.7E-64 1E-68 484.0 27.8 235 1-281 63-298 (300)
4 TIGR00174 miaA tRNA isopenteny 100.0 5.6E-63 1.2E-67 474.2 25.2 228 1-273 59-287 (287)
5 COG0324 MiaA tRNA delta(2)-iso 100.0 3.8E-61 8.2E-66 463.1 26.8 241 1-285 63-305 (308)
6 PRK00091 miaA tRNA delta(2)-is 100.0 2E-59 4.4E-64 454.0 26.5 239 1-285 64-305 (307)
7 PLN02748 tRNA dimethylallyltra 100.0 6.9E-56 1.5E-60 448.7 24.8 243 1-272 82-369 (468)
8 PLN02165 adenylate isopentenyl 100.0 7E-41 1.5E-45 326.1 19.9 182 1-272 103-296 (334)
9 KOG1384 tRNA delta(2)-isopente 100.0 2.1E-35 4.5E-40 283.4 17.5 238 1-327 67-338 (348)
10 PF01745 IPT: Isopentenyl tran 96.2 0.054 1.2E-06 50.8 10.8 104 155-261 113-224 (233)
11 COG2069 CdhD CO dehydrogenase/ 84.1 0.88 1.9E-05 44.6 3.0 34 17-62 185-218 (403)
12 PRK13808 adenylate kinase; Pro 66.2 42 0.0009 33.5 9.4 84 161-286 109-192 (333)
13 PRK13775 formimidoylglutamase; 60.4 15 0.00032 36.3 5.0 34 10-43 103-136 (328)
14 PRK13776 formimidoylglutamase; 60.1 15 0.00032 36.2 4.9 32 11-42 98-129 (318)
15 TIGR01230 agmatinase agmatinas 60.0 15 0.00033 35.1 4.9 32 10-41 73-104 (275)
16 PRK13774 formimidoylglutamase; 55.7 14 0.00029 36.3 3.8 32 11-42 101-132 (311)
17 cd04235 AAK_CK AAK_CK: Carbama 55.5 9.5 0.00021 37.6 2.7 21 21-41 172-192 (308)
18 TIGR01227 hutG formimidoylglut 55.3 14 0.00031 36.0 3.9 32 11-42 92-123 (307)
19 cd02067 B12-binding B12 bindin 54.6 12 0.00027 30.7 2.9 29 13-41 61-91 (119)
20 TIGR01229 rocF_arginase argina 54.0 14 0.0003 35.9 3.6 31 11-41 64-94 (300)
21 PRK13773 formimidoylglutamase; 53.3 18 0.00039 35.7 4.2 32 11-42 100-131 (324)
22 PRK13772 formimidoylglutamase; 51.3 19 0.00041 35.3 4.1 33 10-42 96-128 (314)
23 PRK02190 agmatinase; Provision 48.6 22 0.00048 34.5 4.1 37 11-47 91-127 (301)
24 cd02070 corrinoid_protein_B12- 47.7 18 0.00039 33.0 3.1 29 13-41 144-175 (201)
25 cd02065 B12-binding_like B12 b 45.7 31 0.00068 28.0 4.0 28 13-41 61-90 (125)
26 PF14606 Lipase_GDSL_3: GDSL-l 44.3 4.6 0.0001 36.7 -1.4 61 9-71 70-131 (178)
27 PRK01722 formimidoylglutamase; 43.4 28 0.00061 34.1 3.9 37 11-47 98-134 (320)
28 PF09373 PMBR: Pseudomurein-bi 42.0 43 0.00093 21.8 3.4 29 8-36 3-31 (33)
29 cd02071 MM_CoA_mut_B12_BD meth 40.4 39 0.00084 28.1 3.8 32 10-41 58-91 (122)
30 PF00491 Arginase: Arginase fa 38.6 42 0.00091 31.8 4.2 39 11-49 61-99 (277)
31 PRK12454 carbamate kinase-like 37.0 28 0.0006 34.5 2.7 22 20-41 175-196 (313)
32 PF03464 eRF1_2: eRF1 domain 2 34.3 70 0.0015 27.1 4.5 38 12-49 52-92 (133)
33 COG4359 Uncharacterized conser 34.2 47 0.001 30.8 3.5 22 30-51 88-111 (220)
34 TIGR00640 acid_CoA_mut_C methy 33.3 57 0.0012 28.0 3.7 27 13-39 64-92 (132)
35 COG3877 Uncharacterized protei 31.5 99 0.0022 26.0 4.7 34 199-238 84-117 (122)
36 PF09454 Vps23_core: Vps23 cor 31.1 1.1E+02 0.0025 23.1 4.7 35 214-256 23-57 (65)
37 PF09970 DUF2204: Nucleotidyl 31.1 43 0.00092 30.3 2.7 28 16-43 2-29 (181)
38 KOG4511 Uncharacterized conser 31.1 86 0.0019 30.6 4.8 50 214-263 56-108 (335)
39 PLN02615 arginase 31.0 69 0.0015 31.9 4.4 32 11-42 127-159 (338)
40 PF15500 Toxin_39: Putative RN 30.6 68 0.0015 26.0 3.4 57 56-117 32-89 (96)
41 PRK11545 gntK gluconate kinase 30.4 59 0.0013 28.4 3.5 25 158-182 90-114 (163)
42 KOG3347 Predicted nucleotide k 29.2 1.2E+02 0.0025 27.5 5.0 59 94-180 56-114 (176)
43 PF02001 DUF134: Protein of un 29.2 73 0.0016 26.6 3.6 31 11-41 73-103 (106)
44 PRK14556 pyrH uridylate kinase 28.6 47 0.001 31.8 2.7 16 25-40 131-146 (249)
45 TIGR03263 guanyl_kin guanylate 28.6 32 0.0007 29.9 1.5 28 20-47 81-111 (180)
46 KOG1384 tRNA delta(2)-isopente 27.7 4.4 9.5E-05 40.4 -4.5 101 158-267 172-277 (348)
47 PRK09177 xanthine-guanine phos 27.6 94 0.002 27.3 4.3 37 1-37 1-37 (156)
48 cd02068 radical_SAM_B12_BD B12 26.9 73 0.0016 26.3 3.3 24 18-41 54-78 (127)
49 COG0010 SpeB Arginase/agmatina 26.8 1E+02 0.0022 30.1 4.7 32 10-41 82-113 (305)
50 PF09823 DUF2357: Domain of un 25.6 78 0.0017 29.2 3.6 13 209-221 235-247 (248)
51 cd02069 methionine_synthase_B1 25.3 73 0.0016 29.5 3.3 28 14-41 151-179 (213)
52 PRK12353 putative amino acid k 25.2 54 0.0012 32.3 2.5 24 20-43 175-198 (314)
53 TIGR01125 MiaB-like tRNA modif 24.4 66 0.0014 32.8 3.0 24 17-41 53-76 (430)
54 COG1059 Thermostable 8-oxoguan 24.3 2E+02 0.0044 26.7 5.8 62 209-288 125-192 (210)
55 COG0528 PyrH Uridylate kinase 24.2 63 0.0014 30.8 2.6 17 25-41 120-136 (238)
56 cd02868 PseudoU_synth_hTruB2_l 23.8 47 0.001 31.3 1.7 16 35-50 170-185 (226)
57 TIGR02322 phosphon_PhnN phosph 23.8 79 0.0017 27.5 3.1 21 159-179 111-131 (179)
58 PF02310 B12-binding: B12 bind 23.6 89 0.0019 25.1 3.2 25 16-40 65-90 (121)
59 PRK08202 purine nucleoside pho 23.4 84 0.0018 30.2 3.4 12 32-43 22-34 (272)
60 PRK09825 idnK D-gluconate kina 22.9 79 0.0017 28.1 2.9 24 158-181 98-121 (176)
61 cd04501 SGNH_hydrolase_like_4 22.8 1.5E+02 0.0033 25.5 4.7 41 2-42 68-108 (183)
62 TIGR02370 pyl_corrinoid methyl 22.7 76 0.0016 28.9 2.8 25 17-41 150-177 (197)
63 PF00941 FAD_binding_5: FAD bi 22.2 82 0.0018 27.9 2.9 27 17-46 12-38 (171)
64 PRK14558 pyrH uridylate kinase 20.9 91 0.002 28.9 3.0 26 15-40 103-128 (231)
65 cd02072 Glm_B12_BD B12 binding 20.4 1.2E+02 0.0026 26.1 3.4 22 19-40 67-90 (128)
66 cd01832 SGNH_hydrolase_like_1 20.3 1.8E+02 0.0038 25.0 4.6 36 2-37 76-112 (185)
67 PF01712 dNK: Deoxynucleoside 20.2 84 0.0018 27.0 2.5 24 160-183 69-92 (146)
No 1
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.6e-90 Score=691.42 Aligned_cols=339 Identities=69% Similarity=1.190 Sum_probs=299.1
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|+++|||++|+++|.++|++|+++|++|||||||||||+||++|++.+|+++++++++++++++++...++|+++
T Consensus 81 idil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l 160 (421)
T PLN02840 81 IDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAA 160 (421)
T ss_pred EeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHH
Confidence 58999999999999999999999999999999999999999999999999989999999999998888876444678877
Q ss_pred HHHHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCce
Q 018647 81 VEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDF 160 (352)
Q Consensus 81 l~~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~ 160 (352)
+..+++.+||.|++|||||++||+|||||++.||+|+|+|+.++++|+++.....++....+... .....+|++
T Consensus 161 ~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~y~~ 234 (421)
T PLN02840 161 VELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSS------AETELDYDF 234 (421)
T ss_pred HHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCCHHHhhccccchhhcccccccccccccccc------ccCCCCCCe
Confidence 77788999997789999999999999999999999999986444444444221111110000000 001346999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 018647 161 MCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAF 240 (352)
Q Consensus 161 ~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~~ 240 (352)
++|||.+||++||+||+.||++||++++||++||++|++.|+.++..+++|||||||+++||..|+..+|++|++++.+|
T Consensus 235 ~~i~L~~dR~~Ly~RI~~Rvd~Ml~~~~GLleEV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee~~~~ 314 (421)
T PLN02840 235 LCFFLSSPRLDLYRSIDLRCEEMLAGTNGILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAF 314 (421)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCHHHHHHH
Confidence 99999999999999999999999997779999999999999877645899999999999999988888899999999889
Q ss_pred HHHHHHHHHHHHhHHHHHhcCCCCceeecCCCCHHHHHHHHHHHhhcCCCccccCCccccccccCChHHHhhhhhhcccc
Q 018647 241 LAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRN 320 (352)
Q Consensus 241 le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~~e~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~y~~~~ 320 (352)
++.|+++||||||||+||||+++.++|+|++.+.++++++|.+.|++++++++||++++||+|++|++|.++||+||++|
T Consensus 315 ~e~i~~~TRqYAKRQ~TWFR~~~~~~w~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (421)
T PLN02840 315 LSKFQTASRNFAKRQMTWFRNEPIYHWLDASQPLEKILQFIYDAYHSRTARVVVPESLRMKKEVSCSRESSELKTYRSKN 394 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEecCCCCHHHHHHHHHHHHhcCCCCccCchhhhhhhhhhhHHHHHHHhhhhccc
Confidence 99999999999999999999999999999876788999999999999999999999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHhhhccccc
Q 018647 321 RHFISRGDCCNILDWIKRTQGKTCE 345 (352)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (352)
|||+++++|++||+|||+||+++..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (421)
T PLN02840 395 RHFVSREDCSHVLEWIRRTQCKASA 419 (421)
T ss_pred ceecchhhhHHHHHHHHHhccCccc
Confidence 9999999999999999999999753
No 2
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=1.9e-66 Score=491.20 Aligned_cols=225 Identities=39% Similarity=0.684 Sum_probs=194.4
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
||++||+++|||++|+++|.++|++|+++||+||||||||||++||++|...+|+.+++++..++++++.. + .++
T Consensus 27 id~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p~~~~~~r~~~~~~~~~~----~-~~~ 101 (253)
T PF01715_consen 27 IDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIPEVDPELRAELRAELEEE----G-NEE 101 (253)
T ss_dssp SS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TSSSHHHHHHHHHHHHHHS----C-HHH
T ss_pred eeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhccccHHHHHHHHHHHHhc----c-HHH
Confidence 68999999999999999999999999999999999999999999999999889999999998888887753 4 357
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
++..|+.+||. |++|||||++||+|||||+..||+++|++... . ...++|+
T Consensus 102 l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~------~----------------------~~~~~~~ 153 (253)
T PF01715_consen 102 LYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKK------Q----------------------KPPPRYD 153 (253)
T ss_dssp HHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHC------H----------------------HHCBSSE
T ss_pred HHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhc------c----------------------cccccCC
Confidence 88899999996 88999999999999999999999999998531 0 1346799
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~ 239 (352)
+++|||++||+.||+||++||++||+ +||++||+.|++.|+.++ .++++||||||+++||. |+++.+++
T Consensus 154 ~~~i~L~~~r~~L~~RI~~Rvd~Ml~--~GlleEv~~L~~~~~~~~-~~~~~aIGYkE~~~~l~------g~~~~~e~-- 222 (253)
T PF01715_consen 154 FLVIGLDRDREELYERINKRVDEMLE--QGLLEEVRALLERGLPPD-LPAMQAIGYKEFIDYLE------GEISLEEA-- 222 (253)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHTTGGTT-SCGGGSTTHHHHHHHHT------TSSCHHHH--
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHcCCCCc-chhceeeehHHHHHhhc------CCCCHHHH--
Confidence 99999999999999999999999999 999999999999997665 58999999999999997 89998875
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCceeecC
Q 018647 240 FLAEFQKASRNFAKRQLTWFRNERIYHWLNA 270 (352)
Q Consensus 240 ~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~ 270 (352)
++.++++||||||||+|||||+..++|+|+
T Consensus 223 -~e~i~~~TrqyAKRQ~TWfr~~~~~~w~d~ 252 (253)
T PF01715_consen 223 -IERIKTNTRQYAKRQRTWFRNQPNIHWIDI 252 (253)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSSEEEEET
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCeeeeC
Confidence 899999999999999999999999999986
No 3
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=4.7e-64 Score=484.02 Aligned_cols=235 Identities=27% Similarity=0.395 Sum_probs=208.3
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|+++|||++|+++|.++|++|+++|++||||||||||++||++|+...|+.++++|.++.+.++.. + .++
T Consensus 63 id~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~----g-~~~ 137 (300)
T PRK14729 63 VDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLK----G-KSY 137 (300)
T ss_pred eeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc----C-HHH
Confidence 68999999999999999999999999999999999999999999999999888888999988877666542 3 367
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
++..|+.+||. |++|||||++||+|||||+..||+|+|+|+.. .. ..|+
T Consensus 138 l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv~~~tG~~~s~~~~~-----------------------------~~-~~~~ 187 (300)
T PRK14729 138 LLEELKRVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKK-----------------------------QN-MFKN 187 (300)
T ss_pred HHHHHHhcCHHHHhhCCcCCHHHHHHHHHHHHHhCCChHhhhhc-----------------------------cC-CCCC
Confidence 88999999995 88999999999999999999999999997421 11 2589
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~ 239 (352)
+++|+|++||++||+||++||+.||+ +||++||++|++.|+.++ .++++||||||+++||. +|.++++++
T Consensus 188 ~~~i~l~~~r~~L~~rI~~Rv~~Ml~--~GlieEv~~l~~~~~~~~-~~~~~aIGYkE~~~yl~-----~g~~~l~e~-- 257 (300)
T PRK14729 188 ILAIGLKRPMEEMKSRIISRVNNMID--CGLLSEIKSLLGKGYNEN-TPAFKGIGYREFLLWKS-----RPCYMLNDI-- 257 (300)
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcCCCCC-CCcceeEcHHHHHHHHh-----cCCCCHHHH--
Confidence 99999999999999999999999999 999999999999887654 58999999999999994 388888875
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCCHHHHHHHH
Q 018647 240 FLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYI 281 (352)
Q Consensus 240 ~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~~e~i~~~i 281 (352)
++.++++||||||||+||||+++.++|+|.+...+.++..|
T Consensus 258 -~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~i 298 (300)
T PRK14729 258 -INLIVKNSFLYVKRQMTFFAKIPNVLWFHPDDDLKNILDLI 298 (300)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCCCCeeecCCCCHHHHHHHH
Confidence 89999999999999999999999999999754445555443
No 4
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=5.6e-63 Score=474.16 Aligned_cols=228 Identities=32% Similarity=0.503 Sum_probs=205.8
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|++.|||++|+.+|.++|++++++|++|||||||||||+||++|....|+.++++|++++++++.. +| ++
T Consensus 59 id~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~----g~-~~ 133 (287)
T TIGR00174 59 IDILDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQ----GW-DF 133 (287)
T ss_pred EEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc----CH-HH
Confidence 57899999999999999999999999999999999999999999999999888888999998887766643 44 56
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
++.+|+.+||. |++|||||++||+|||||++.||+|+|++... + ....+|+
T Consensus 134 l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi~~~tG~~~s~~~~~------~----------------------~~~~~~~ 185 (287)
T TIGR00174 134 LYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKE------Q----------------------KIELFYD 185 (287)
T ss_pred HHHHHHhcCHHHHHhcCCccHHHHHHHHHHHHHHCCChHHHhhc------c----------------------CCCCCCC
Confidence 88889999996 88999999999999999999999999997421 1 1234699
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~ 239 (352)
+++|||++||++||+||++||+.||+ +||++||..|++.|+.++ .+++|||||||+++||. |+++.+++
T Consensus 186 ~~~i~l~~dr~~L~~rI~~Rv~~Mi~--~Gl~eEv~~l~~~~~~~~-~~~~~aIGYkE~~~~l~------g~~~~~e~-- 254 (287)
T TIGR00174 186 AVQIGLASSREPLHQRIEQRVHDMLE--SGLLAEVKALYAQYDLCD-LPSIQAIGYKEFLLYLE------GTVSLEDA-- 254 (287)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhccCCcC-CchhhhccHHHHHHHHc------CCCCHHHH--
Confidence 99999999999999999999999999 999999999999887654 58999999999999996 89998875
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCC
Q 018647 240 FLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP 273 (352)
Q Consensus 240 ~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~ 273 (352)
++.++++||||||||+||||+++.++|+|+++|
T Consensus 255 -ie~i~~~Tr~yAKRQ~TWfR~~~~~~~~~~~~~ 287 (287)
T TIGR00174 255 -IERIKCNTRQYAKRQLTWFRKWSDVLWLDSTDP 287 (287)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCEEeCCCCC
Confidence 899999999999999999999999999997643
No 5
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-61 Score=463.08 Aligned_cols=241 Identities=36% Similarity=0.570 Sum_probs=214.6
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
|+++||++.|||++|.++|.++|++|.+|||+||||||||||++||++|++..|..+++++..++.+++.+ +| .+
T Consensus 63 iDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~----g~-~~ 137 (308)
T COG0324 63 IDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAEL----GN-DA 137 (308)
T ss_pred ecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc----CH-HH
Confidence 68999999999999999999999999999999999999999999999999999999999998887777764 43 57
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
+|..|+.+||. |++|||||.+|++|||||+..||+|+|+++.. + .....+|+
T Consensus 138 L~~~L~~~Dp~~a~~i~pnD~~Ri~RALEv~~~tGk~~s~~~~~------~---------------------~~~~~~~~ 190 (308)
T COG0324 138 LHAELKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISELQKR------S---------------------RPILEPYD 190 (308)
T ss_pred HHHHHHhhCHHHHHhcCCCchhHHHHHHHHHHHHCCCHHHHhhc------c---------------------cCCCCCcc
Confidence 88889999996 88999999999999999999999999998532 0 02344899
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~ 239 (352)
++.|+|.++|+.||.||+.||+.|++ .||++||++|++.|+.++ .+++|+|||||+.+||. |.++.+++
T Consensus 191 ~~~~~l~~~r~~L~~rI~~R~d~Ml~--~Gli~EV~~L~~~g~~~~-~~~~~~iGy~e~~~yl~------g~~~~~ea-- 259 (308)
T COG0324 191 ILIIALAADREVLYERINRRVDAMLE--QGLIEEVKALYARGLHLD-LPAMQAIGYKEILAYLD------GGISLEEA-- 259 (308)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHH--ccHHHHHHHHHhccCCcc-chHHHhcCHHHHHHHHh------CCCCHHHH--
Confidence 99999999999999999999999999 999999999999998776 58999999999999997 77998875
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCC-HHHHHHHHHHHh
Q 018647 240 FLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP-LENVLNYIITAY 285 (352)
Q Consensus 240 ~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~-~e~i~~~i~~~~ 285 (352)
++.++.+||||||||+|||||+..++|++...+ ..+....+.+.+
T Consensus 260 -~~~~~~~TRqyAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~v~~~~ 305 (308)
T COG0324 260 -IERIKTATRQYAKRQLTWFRNQLGVHWLDSESPDTLDAAKSVEKAL 305 (308)
T ss_pred -HHHHHHHHHHHHHHHHHHhccCcccceeccCCcchHHHHHHHHHHh
Confidence 899999999999999999999999999998754 223334555543
No 6
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=2e-59 Score=454.02 Aligned_cols=239 Identities=37% Similarity=0.620 Sum_probs=211.7
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|.+.||+++|+++|.++|++++++|++||||||||||++||++|....|+.++++++.+.....+ .++ .+
T Consensus 64 id~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~----~g~-~~ 138 (307)
T PRK00091 64 IDILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAE----EGW-EA 138 (307)
T ss_pred ecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHh----cCH-HH
Confidence 5889999999999999999999999999999999999999999999999988888888888887766554 244 56
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
++..|+.+||. |++|||||++||+|||||+..||+++|++... ....+|+
T Consensus 139 l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi~~~tG~~~s~~~~~-----------------------------~~~~~~~ 189 (307)
T PRK00091 139 LHAELAEIDPEAAARIHPNDPQRIIRALEVYELTGKPLSELQKR-----------------------------GKPPPYR 189 (307)
T ss_pred HHHHHHhcCHHHHhhcCCCCCchhHHHHHHHHHHCCChhhhhhc-----------------------------cccCCCC
Confidence 88899999996 88999999999999999999999999987420 0125699
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYA 239 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~ 239 (352)
+++|||++||+.||+||+.||+.||+ +||++||..|++.|+.++ .+++|||||||+++||. |++|++++
T Consensus 190 ~~~~~l~~dr~~L~~rI~~Rv~~Ml~--~Gl~eEv~~l~~~~~~~~-~~~~~aIGykE~~~yl~------g~~s~~e~-- 258 (307)
T PRK00091 190 VLIIGLDPDREELYERINQRVDQMLE--QGLLEEVRALLARGYLPD-LPAMRAIGYKELLAYLD------GEISLEEA-- 258 (307)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHcCCCCC-CccceeecHHHHHHHHc------CCCCHHHH--
Confidence 99999999999999999999999999 999999999999887665 58999999999999996 99998875
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC--CHHHHHHHHHHHh
Q 018647 240 FLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR--PLENVLNYIITAY 285 (352)
Q Consensus 240 ~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~--~~e~i~~~i~~~~ 285 (352)
++.++++||||||||+||||++..++|+|.+. ..+++++.|...+
T Consensus 259 -~e~i~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~i~~~i~~~~ 305 (307)
T PRK00091 259 -IEKIKQATRQYAKRQLTWFRRQPDIHWLDLSPEEALEEILRLLEAKL 305 (307)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCCCeeecCCCchHHHHHHHHHHHhh
Confidence 89999999999999999999999999999433 3667777776653
No 7
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=6.9e-56 Score=448.66 Aligned_cols=243 Identities=18% Similarity=0.276 Sum_probs=193.7
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCC--CCCC--------CHHHHHHHH--HHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPD--VPKA--------SPEIIAEVN--SEL 68 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~--~p~~--------~~eir~~~~--~~l 68 (352)
||+++|+++|||++|+++|.++|++|++|||+|||||||||||+||++|... .|+. ++.+++.+. .++
T Consensus 82 id~v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~ 161 (468)
T PLN02748 82 LGVISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGL 161 (468)
T ss_pred EeecCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999853 3321 245666552 333
Q ss_pred HHHhhCCChHHHHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCC
Q 018647 69 ADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAG 147 (352)
Q Consensus 69 ~~l~~~~~~~~~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (352)
.. .+ .+.++..|+++||. |++|||||++||+||||||..||+++|++... +....
T Consensus 162 ~~----~g-~~~l~~~L~~vDP~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~------~~~~~------------- 217 (468)
T PLN02748 162 GN----DD-EDHGYELLKELDPVAANRIHPNNHRKINRYLELYATTGVLPSKLYQG------KAAEN------------- 217 (468)
T ss_pred Hh----cC-HHHHHHHHHhhCHHHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhh------ccccc-------------
Confidence 33 23 35688899999996 88999999999999999999999999997421 10000
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhh
Q 018647 148 ASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQ 227 (352)
Q Consensus 148 ~~~~~~~~~~yd~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~ 227 (352)
++ .....+|++++|||++||++||+||++||+.||+ +||++||+.|++.+.... .+++||||||||++||.....
T Consensus 218 ~~--~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle--~GlleEv~~l~~~~~~~~-~~~~qaIGykE~~~yL~~~~~ 292 (468)
T PLN02748 218 WG--RISNSRFDCCFICVDADTAVLDRYVNQRVDCMID--AGLLDEVYDIYDPGADYT-RGLRQAIGVREFEDFLRLYLS 292 (468)
T ss_pred cc--cccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcCCCCC-cccceeEcHHHHHHHHHhccc
Confidence 00 0013569999999999999999999999999999 999999999999865433 468999999999999974321
Q ss_pred C--CCCC---------------------CHH----HHHHHHHHHHHHHHHHHhHHHHHhcCC-----CCceeecCCC
Q 018647 228 Q--GGTS---------------------STG----EFYAFLAEFQKASRNFAKRQLTWFRNE-----RIYHWLNAAR 272 (352)
Q Consensus 228 ~--~g~~---------------------s~~----e~~~~le~i~~~TRqyAKRQ~TWfR~~-----~~~~Wid~~~ 272 (352)
. .|++ +.+ .+.++++.++++||||||||+||||+. ..++|+|++.
T Consensus 293 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~ 369 (468)
T PLN02748 293 RNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATE 369 (468)
T ss_pred ccccccccccccccchhhhhhhccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechh
Confidence 1 1332 011 245679999999999999999999985 3679999863
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=7e-41 Score=326.07 Aligned_cols=182 Identities=19% Similarity=0.302 Sum_probs=147.6
Q ss_pred CCccCCCC-ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHH
Q 018647 1 MSAKHLNT-YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYA 79 (352)
Q Consensus 1 ~~~~dp~e-~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~ 79 (352)
+++++|.+ .|||++|+++|..+|++|+++|++|||||||||||+||++|..
T Consensus 103 i~~~~~~~~~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~---------------------------- 154 (334)
T PLN02165 103 LGELNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF---------------------------- 154 (334)
T ss_pred hheeccccceeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC----------------------------
Confidence 46889997 8999999999999999999999999999999999999999862
Q ss_pred HHHHHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCC-CCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCC
Q 018647 80 AVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSP-PSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDY 158 (352)
Q Consensus 80 ~l~~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~-~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 158 (352)
||. ++| ..||++ +|.. .+|
T Consensus 155 ---------dpe---~~p-------------~~tg~~~~s~~-----------------------------------~~~ 174 (334)
T PLN02165 155 ---------DPE---IYP-------------FSSGSSLISSD-----------------------------------LRY 174 (334)
T ss_pred ---------CCc---cCh-------------hhcCCCccccc-----------------------------------cCC
Confidence 221 111 257876 4421 248
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCC-CccccccccHHHHHHHHHHhhhC--CCCCC--
Q 018647 159 DFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPN-SNSATRAIGYRQAMEYLLRCRQQ--GGTSS-- 233 (352)
Q Consensus 159 d~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~-~~~a~~aIGYkE~~~yL~~~~~~--~g~~s-- 233 (352)
++++|||.+||++||+||++||+.||+ +||++||+.|++.++.++ ..+++|||||||+++||...... .|+++
T Consensus 175 ~~~~i~l~~dr~~L~~RI~~Rvd~Ml~--~GlldEv~~L~~~~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~ 252 (334)
T PLN02165 175 DCCFIWVDVSEPVLFEYLSKRVDEMMD--SGMFEELAEFYDPVKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQA 252 (334)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHccCCcccCCCceeEEcHHHHHHHHHhccccccCCccchh
Confidence 889999999999999999999999999 999999999999876553 24799999999999999732111 25443
Q ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHhcCCCC----ceeecCCC
Q 018647 234 -TGEFYAFLAEFQKASRNFAKRQLTWFRNERI----YHWLNAAR 272 (352)
Q Consensus 234 -~~e~~~~le~i~~~TRqyAKRQ~TWfR~~~~----~~Wid~~~ 272 (352)
...+.++++.++++||||||||+||||++.. ++|+|+++
T Consensus 253 ~~~~l~e~ie~ik~~TrqYAKRQ~TWfR~~~~~~~~~~~lD~t~ 296 (334)
T PLN02165 253 RKAAYEEAVREIKENTCQLAKRQIEKIMKLKSAGWDIKRVDATA 296 (334)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEEechh
Confidence 1124456999999999999999999999754 56788763
No 9
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-35 Score=283.43 Aligned_cols=238 Identities=25% Similarity=0.367 Sum_probs=184.1
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
||+++|+.+||+++|.++|..+|++|++|||+|||||||++|++||+++..+.
T Consensus 67 lg~l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~--------------------------- 119 (348)
T KOG1384|consen 67 LGHLHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDP--------------------------- 119 (348)
T ss_pred hCcCChHhhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCc---------------------------
Confidence 79999999999999999999999999999999999999999999999987431
Q ss_pred HHHHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCce
Q 018647 81 VEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDF 160 (352)
Q Consensus 81 l~~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~ 160 (352)
+.||.++. ||.++|++ +||+
T Consensus 120 ------~~dp~~~~------------------~g~~pS~l------------------------------------ryd~ 139 (348)
T KOG1384|consen 120 ------KIDPFSSN------------------TGSIPSEL------------------------------------RYDC 139 (348)
T ss_pred ------ccCccccc------------------CCCCCccc------------------------------------ccce
Confidence 44674322 89888765 5999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCC---HHHH
Q 018647 161 MCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSS---TGEF 237 (352)
Q Consensus 161 ~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s---~~e~ 237 (352)
+++||+.+...|+.+++.|||+||+ +||++|++.|++........+.-++||+.|+..|+.-..-.-+..+ .+-+
T Consensus 140 c~lWlda~~~VL~~~l~~RVD~Ml~--~Gl~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l 217 (348)
T KOG1384|consen 140 CFLWLDADQAVLFERLDKRVDDMLE--SGLLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELL 217 (348)
T ss_pred EEEEEecchHHHHHHHHHHHHHHHH--cchHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHH
Confidence 9999999999999999999999999 9999999999998544444457899999999999863211111111 2235
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCCce-e----ecCCC--------------------------CHHHHHHHHHHHhh
Q 018647 238 YAFLAEFQKASRNFAKRQLTWFRNERIYH-W----LNAAR--------------------------PLENVLNYIITAYH 286 (352)
Q Consensus 238 ~~~le~i~~~TRqyAKRQ~TWfR~~~~~~-W----id~~~--------------------------~~e~i~~~i~~~~~ 286 (352)
.++++.|+.+|++|||||.+|+.+..... | +|++. |-..+++.+...+.
T Consensus 218 ~~aie~iK~nT~~lakrQ~~~I~~l~~~~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~~ 297 (348)
T KOG1384|consen 218 EKAIEAIKENTRRLAKRQKRKIEKLFLPRKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYYE 297 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhhh
Confidence 67899999999999999999999864322 4 33321 11234455555555
Q ss_pred cCCCccccCCccccccccCChHHHhhhhhhccccccccCcc
Q 018647 287 DSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRG 327 (352)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~y~~~~~~~~~~~ 327 (352)
.....+..+.++.+.......-+....|-|+.+|++-.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~k~ 338 (348)
T KOG1384|consen 298 SEARRLEGPESLAAEICLNDSLEACVVKGERSKNRHEGSKS 338 (348)
T ss_pred hhcccccchHHHhHHHhhccchhHHHHHhhhhhhhhhcccc
Confidence 55556667888888776555568889999999997655544
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.20 E-value=0.054 Score=50.78 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCCceEEEEEe-CCHHHHHHHHHHHHHHhccC---CCCHHHHHHHHHHcCCCCCCccccccc-cHHHHHHHHHHhhhCC
Q 018647 155 DLDYDFMCFFLS-SHRLDLYRSIDLRCEDMLPG---SDGILSEAAWLLDEGLLPNSNSATRAI-GYRQAMEYLLRCRQQG 229 (352)
Q Consensus 155 ~~~yd~~~~~L~-~~R~~L~~rI~~Rvd~Ml~~---~~GLl~Ev~~L~~~g~~~~~~~a~~aI-GYkE~~~yL~~~~~~~ 229 (352)
..+|...+..+. .+++.-..|+.+||.+|+.. ..++++|+..|... |...+.+..| ||+.++.|.....-..
T Consensus 113 ~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~lW~~---p~~r~~ledIdGyr~~i~~a~~~~v~~ 189 (233)
T PF01745_consen 113 SLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVALWND---PALRPILEDIDGYRYIIRFARKHQVTP 189 (233)
T ss_dssp SSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHHHHTS---TTHHHHHTTSTTHHHHHHHHHHTT--G
T ss_pred cCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhC---ccccchHhhhccHHHHHHHHHHhCCCH
Confidence 356777777776 58888899999999999972 24799999999976 3445677777 9999999997431111
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q 018647 230 ---GTSSTGEFYAFLAEFQKASRNFAKRQLTWFRN 261 (352)
Q Consensus 230 ---g~~s~~e~~~~le~i~~~TRqyAKRQ~TWfR~ 261 (352)
-.++.+...+.++.|-..--.||..|..=|-.
T Consensus 190 ~~l~~~~~~~~~~Li~~ia~eY~~ha~~QEq~F~~ 224 (233)
T PF01745_consen 190 DQLLSIDLDMLQELIEGIAEEYLEHAQWQEQEFPQ 224 (233)
T ss_dssp GGCCG-THHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11334434456888888999999999876654
No 11
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=84.14 E-value=0.88 Score=44.58 Aligned_cols=34 Identities=38% Similarity=0.767 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHH
Q 018647 17 EDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIA 62 (352)
Q Consensus 17 ~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~ 62 (352)
+.|.+.+++++..=++|||+||+|= |..||++-.
T Consensus 185 ~EAak~lEdvLqAVdvPiiiGGSGn------------peKDpeVle 218 (403)
T COG2069 185 KEAAKTLEDVLQAVDVPIIIGGSGN------------PEKDPEVLE 218 (403)
T ss_pred HHHHHHHHHHHHhcCcCEEecCCCC------------CccCHHHHH
Confidence 6788999999999999999999972 556777643
No 12
>PRK13808 adenylate kinase; Provisional
Probab=66.23 E-value=42 Score=33.53 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=51.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 018647 161 MCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAF 240 (352)
Q Consensus 161 ~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~~ 240 (352)
++|+|++|.+.+-.|+..|...|-. .|.. . ..+ .+.+.+.+-
T Consensus 109 lVI~LDVp~evll~Rl~~R~~~~~~--rg~~--------~--R~D--------------------------D~~E~i~kR 150 (333)
T PRK13808 109 AVVELRVNEGALLARVETRVAEMRA--RGEE--------V--RAD--------------------------DTPEVLAKR 150 (333)
T ss_pred eEEEEECCHHHHHHHHHcCcccccc--cCCc--------c--CCC--------------------------CCHHHHHHH
Confidence 3788999999999999999776644 4410 0 001 122222222
Q ss_pred HHHHHHHHHHHHhHHHHHhcCCCCceeecCCCCHHHHHHHHHHHhh
Q 018647 241 LAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYH 286 (352)
Q Consensus 241 le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~~e~i~~~i~~~~~ 286 (352)
++.+...|+-. +.+|.....++-||.+.+.++|.+.|...+.
T Consensus 151 L~~Y~~~t~PL----l~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 151 LASYRAQTEPL----VHYYSEKRKLLTVDGMMTIDEVTREIGRVLA 192 (333)
T ss_pred HHHHHHHhHHH----HHHhhccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 23333333322 2567766667889998888888887777664
No 13
>PRK13775 formimidoylglutamase; Provisional
Probab=60.44 E-value=15 Score=36.34 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=28.7
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHH
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYL 43 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl 43 (352)
.++.+..+...+.+.+++++|++||+.||-+.--
T Consensus 103 ~~~~~~~~~l~~~v~~~~~~g~~PivlGGdHsit 136 (328)
T PRK13775 103 RSLEQLQNSLSKAIKRMCDLNLKPIVLGGGHETA 136 (328)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCeEEEEcCcHHHH
Confidence 4677777888889999999999999999987643
No 14
>PRK13776 formimidoylglutamase; Provisional
Probab=60.10 E-value=15 Score=36.18 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++....+...+.+.++.++|++||++||-+.-
T Consensus 98 ~~~~~~~~i~~~v~~i~~~g~~Pi~lGGdHsi 129 (318)
T PRK13776 98 DLEAAQSRYAQRVHDLLDRGHLPIGLGGGHEI 129 (318)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEEcCchHH
Confidence 47777888888899999999999999998764
No 15
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=59.97 E-value=15 Score=35.13 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
-++....+...+.+.++.++|++||++||-+.
T Consensus 73 ~~~~~~~~~i~~~v~~~~~~~~~pi~lGGdHs 104 (275)
T TIGR01230 73 GDAREMFEKIQEHAEEFLEEGKFPVAIGGEHS 104 (275)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEecCcch
Confidence 35778888888889999999999999999875
No 16
>PRK13774 formimidoylglutamase; Provisional
Probab=55.71 E-value=14 Score=36.31 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++....+...+.+.+++++|++||+.||-+.-
T Consensus 101 ~~~~~~~~i~~~v~~i~~~g~~pivlGGdHsi 132 (311)
T PRK13774 101 ELIDTQKEFAMLAAKSIANHRQTFLLGGGHDI 132 (311)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEcCchHH
Confidence 46677788888889999999999999998754
No 17
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=55.53 E-value=9.5 Score=37.64 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCeEEEcCChh
Q 018647 21 HATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 21 ~~i~~I~~rgkvPIvVGGTgl 41 (352)
++|+.++++|.+||++||+|-
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGi 192 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGI 192 (308)
T ss_pred HHHHHHHHCCCEEEEECCCcc
Confidence 788889999999999999874
No 18
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=55.28 E-value=14 Score=35.95 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++....+...+.+.+++++|++||+.||-+.-
T Consensus 92 ~~~~~~~~i~~~v~~~~~~g~~Pi~lGGdHsi 123 (307)
T TIGR01227 92 DLEDTQHEIAQTAAALLADHRVPVILGGGHSI 123 (307)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEECCcchh
Confidence 57777788888899999999999999999763
No 19
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=54.62 E-value=12 Score=30.66 Aligned_cols=29 Identities=14% Similarity=0.412 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhcC--CCeEEEcCChh
Q 018647 13 GKFFEDARHATKDVLKKG--RVPIVTGGTGL 41 (352)
Q Consensus 13 ~~F~~~A~~~i~~I~~rg--kvPIvVGGTgl 41 (352)
......+.++++.+.+.+ +++|++||..+
T Consensus 61 ~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 61 TTHMTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred cccHHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 555677788888887776 59999999865
No 20
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=54.04 E-value=14 Score=35.90 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
++....+...+.+.+++++|++||+.||-+-
T Consensus 64 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHs 94 (300)
T TIGR01229 64 YVLAATEQLAPKVYEVFEEGRFPLVLGGDHS 94 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEEcCcch
Confidence 4666777778888999999999999999865
No 21
>PRK13773 formimidoylglutamase; Provisional
Probab=53.26 E-value=18 Score=35.68 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++....+...+.+.++.++|++||+.||-+.-
T Consensus 100 ~~~~~~~~i~~~v~~~~~~g~~PivLGGdHsi 131 (324)
T PRK13773 100 DLEAGQERLGDAVSALLDAGHLPVVLGGGHET 131 (324)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeeEEECCchHH
Confidence 46666777788889999999999999998753
No 22
>PRK13772 formimidoylglutamase; Provisional
Probab=51.30 E-value=19 Score=35.32 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
-++....+...+.+.+++++|++||+.||-+.-
T Consensus 96 ~~~~~~~~~i~~~v~~~~~~g~~PivlGGdHsi 128 (314)
T PRK13772 96 GDLESAQAALAEVVAEVLAAGARPLVLGGGHEV 128 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCEEEEEcCchHH
Confidence 456777788888999999999999999998653
No 23
>PRK02190 agmatinase; Provisional
Probab=48.63 E-value=22 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFI 47 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl 47 (352)
++..+.+...+.++++.++|++||+.||-+.---..+
T Consensus 91 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsit~~~~ 127 (301)
T PRK02190 91 DAEDFPEALEAHAEKILAAGKRMLTLGGDHFITLPLL 127 (301)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEECCcchhhHHHH
Confidence 4667778888889999999999999999876443333
No 24
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=47.73 E-value=18 Score=32.96 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEcCChh
Q 018647 13 GKFFEDARHATKDVLKKG---RVPIVTGGTGL 41 (352)
Q Consensus 13 ~~F~~~A~~~i~~I~~rg---kvPIvVGGTgl 41 (352)
..-...+.++++.+.+.+ ++||+|||..+
T Consensus 144 ~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~ 175 (201)
T cd02070 144 TTTMGGMKEVIEALKEAGLRDKVKVMVGGAPV 175 (201)
T ss_pred cccHHHHHHHHHHHHHCCCCcCCeEEEECCcC
Confidence 344566778888887776 69999999875
No 25
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.74 E-value=31 Score=27.96 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhc-C-CCeEEEcCChh
Q 018647 13 GKFFEDARHATKDVLKK-G-RVPIVTGGTGL 41 (352)
Q Consensus 13 ~~F~~~A~~~i~~I~~r-g-kvPIvVGGTgl 41 (352)
..+. .+.+.+..+..+ + ++||++||.+.
T Consensus 61 ~~~~-~~~~~~~~~~~~~p~~~~ivvGG~~~ 90 (125)
T cd02065 61 TTHM-EAMKLVIEALKELGIDIPVVVGGAHP 90 (125)
T ss_pred HhHH-HHHHHHHHHHHhcCCCCeEEEeCCcC
Confidence 3443 334444455444 4 69999999765
No 26
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=44.30 E-value=4.6 Score=36.74 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=35.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhcC-CCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHH
Q 018647 9 YYSVGKFFEDARHATKDVLKKG-RVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADL 71 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rg-kvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l 71 (352)
++|+..|.+.+...++.|.++. .+||||--+-.|-.+.+.+.. ...-.+.++.+++.++++
T Consensus 70 N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~--~~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 70 NMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSR--GETVEEFREALREAVEQL 131 (178)
T ss_dssp HCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TT--S--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchH--HHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999887 799999877766555333221 111234455555555555
No 27
>PRK01722 formimidoylglutamase; Provisional
Probab=43.36 E-value=28 Score=34.08 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFI 47 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl 47 (352)
++....+...+.+..++++|+.||+.||-+.---..+
T Consensus 98 ~~~~~~~~i~~~v~~~~~~g~~pi~lGGdHsit~~~~ 134 (320)
T PRK01722 98 DLEEAQQALADTVGHCLRPNMRTIVLGGGHEIAFGSF 134 (320)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeeEEEcCchHHHHHHH
Confidence 4667777778888889999999999999876443333
No 28
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=42.03 E-value=43 Score=21.78 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.2
Q ss_pred CccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 018647 8 TYYSVGKFFEDARHATKDVLKKGRVPIVT 36 (352)
Q Consensus 8 e~ysv~~F~~~A~~~i~~I~~rgkvPIvV 36 (352)
..++..+|.+.|.++.+-+-++|+.|=-|
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYESNGRLPNYV 31 (33)
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCee
Confidence 46788999999999999999999999544
No 29
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.45 E-value=39 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHHHHHHhcC--CCeEEEcCChh
Q 018647 10 YSVGKFFEDARHATKDVLKKG--RVPIVTGGTGL 41 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rg--kvPIvVGGTgl 41 (352)
++-..+...+.++++.+.++| +++|++||+..
T Consensus 58 ~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 58 SLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344677778888888887763 58999999854
No 30
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=38.56 E-value=42 Score=31.84 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcC
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYG 49 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G 49 (352)
+..+..+...+.+.+++++|+.||+.||-+.---+.+.+
T Consensus 61 ~~~~~~~~l~~~v~~~~~~g~~pi~lGGdhsis~~~~~~ 99 (277)
T PF00491_consen 61 DNEQVFERLAEAVAEVLEAGAFPIVLGGDHSISYGTIAA 99 (277)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEESSGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCEEEecCCCchhHHHhHHH
Confidence 455567888888999999999999999998765555544
No 31
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=37.03 E-value=28 Score=34.52 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCCeEEEcCChh
Q 018647 20 RHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 20 ~~~i~~I~~rgkvPIvVGGTgl 41 (352)
.++|+.+++.|.+||++||+|.
T Consensus 175 ~~aI~~LLe~G~IvI~~GgGGi 196 (313)
T PRK12454 175 IEVIKALVENGFIVIASGGGGI 196 (313)
T ss_pred HHHHHHHHHCCCEEEEeCCCcc
Confidence 4678889999999999999865
No 32
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=34.25 E-value=70 Score=27.09 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH--HhcCC-CeEEEcCChhHHHHHHcC
Q 018647 12 VGKFFEDARHATKDV--LKKGR-VPIVTGGTGLYLRWFIYG 49 (352)
Q Consensus 12 v~~F~~~A~~~i~~I--~~rgk-vPIvVGGTglYl~aLl~G 49 (352)
...|+++..+.+.+. ..... -+||+||.|++-..+..-
T Consensus 52 ~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~k~~f~~~ 92 (133)
T PF03464_consen 52 LEKFFKEIAEALKKYFLVNFDDVKCIIIAGPGFTKEEFYKY 92 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCHTTTCSEEEEEESTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccEEEEECCHHHHHHHHHH
Confidence 458888888888887 44443 689999999988777643
No 33
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=34.18 E-value=47 Score=30.80 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=17.0
Q ss_pred CCCeE--EEcCChhHHHHHHcCCC
Q 018647 30 GRVPI--VTGGTGLYLRWFIYGKP 51 (352)
Q Consensus 30 gkvPI--vVGGTglYl~aLl~G~~ 51 (352)
..+|+ |.||+.+|+..|+.|.-
T Consensus 88 ~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 88 HDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cCCCEEEEeCCCchHHHHHHHhhc
Confidence 44454 45999999999998863
No 34
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.26 E-value=57 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhcC--CCeEEEcCC
Q 018647 13 GKFFEDARHATKDVLKKG--RVPIVTGGT 39 (352)
Q Consensus 13 ~~F~~~A~~~i~~I~~rg--kvPIvVGGT 39 (352)
+.+...+.++++.+.++| .++|+|||.
T Consensus 64 ~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 64 GGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 456677778888887766 589999984
No 35
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.52 E-value=99 Score=26.01 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=26.2
Q ss_pred HcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHH
Q 018647 199 DEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFY 238 (352)
Q Consensus 199 ~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~ 238 (352)
+.|+.|.. .-.+-||=+.++.-|. .|+++.+++.
T Consensus 84 amgy~p~~-e~~~~i~~~~i~~qle-----~Gei~peeA~ 117 (122)
T COG3877 84 AMGYNPDS-ENSVNIGKKKIIDQLE-----KGEISPEEAI 117 (122)
T ss_pred HcCCCCCC-CChhhhhHHHHHHHHH-----cCCCCHHHHH
Confidence 34677763 5677889899999997 5999999863
No 36
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.14 E-value=1.1e+02 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 018647 214 GYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQL 256 (352)
Q Consensus 214 GYkE~~~yL~~~~~~~g~~s~~e~~~~le~i~~~TRqyAKRQ~ 256 (352)
+..+.+-+|..... .|.++.+ .+.+.+|.+|+.|.
T Consensus 23 AieDtiy~L~~al~-~g~I~~d-------~~lK~vR~LaReQF 57 (65)
T PF09454_consen 23 AIEDTIYYLDRALQ-RGSIDLD-------TFLKQVRSLAREQF 57 (65)
T ss_dssp HHHHHHHHHHHHHH-TTSS-HH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCHH-------HHHHHHHHHHHHHH
Confidence 44556666654333 4678754 45689999999985
No 37
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.10 E-value=43 Score=30.28 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCChhHH
Q 018647 16 FEDARHATKDVLKKGRVPIVTGGTGLYL 43 (352)
Q Consensus 16 ~~~A~~~i~~I~~rgkvPIvVGGTglYl 43 (352)
+++-..+++.+..+|--++|||||-+-+
T Consensus 2 ~~~l~~~~~~L~~~gv~~~ivGG~av~l 29 (181)
T PF09970_consen 2 FEALKEILEELNKRGVEYVIVGGAAVNL 29 (181)
T ss_pred HHHHHHHHHHHHHcCCeEEEECHHHHHH
Confidence 3455566676666666799999998754
No 38
>KOG4511 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=86 Score=30.62 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH--HHHHHHH-HhHHHHHhcCCC
Q 018647 214 GYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF--QKASRNF-AKRQLTWFRNER 263 (352)
Q Consensus 214 GYkE~~~yL~~~~~~~g~~s~~e~~~~le~i--~~~TRqy-AKRQ~TWfR~~~ 263 (352)
-||++++||..|--..-.++.++|..+...+ +..|.+| |--|--|--++.
T Consensus 56 EYk~LVd~lle~f~eevgi~p~qf~~Ac~~~~q~~~~h~~qv~lqp~lAA~df 108 (335)
T KOG4511|consen 56 EYKQLVDTLLECFCEEVGITPTQFVAACQLFNQKDVSHQYQVALQPLLAAQDF 108 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhcccccchhHHHHHHHHHHHHhcch
Confidence 6888888887665434457777776666555 3333333 223445655543
No 39
>PLN02615 arginase
Probab=31.03 E-value=69 Score=31.90 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHhc-CCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKK-GRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~r-gkvPIvVGGTglY 42 (352)
++.+..+...+.+..++++ +++||+.||-+.-
T Consensus 127 ~~~~~~~~i~~~v~~ll~~~~~~Pi~LGGDHsi 159 (338)
T PLN02615 127 DDDRLMNVISESVKLVMEEEPLRPLVLGGDHSI 159 (338)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEECcchHh
Confidence 6778888899999999986 6799999998763
No 40
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=30.61 E-value=68 Score=26.00 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCChHHHHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCC
Q 018647 56 ASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPP 117 (352)
Q Consensus 56 ~~~eir~~~~~~l~~l~~~~~~~~~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~ 117 (352)
+=|-|+-...+++......-.|.+.++. ++..||. ++. .-..|++|||-.+..|-+.
T Consensus 32 PCPvi~veYkkel~a~p~lk~wne~vq~-~Rk~dp~~aAd----eaakLi~alE~ar~ngg~a 89 (96)
T PF15500_consen 32 PCPVIRVEYKKELAADPALKAWNETVQA-KRKLDPKFAAD----EAAKLIQALETARNNGGTA 89 (96)
T ss_pred CCCchhHHHHHHhccCHHHHHHHHHHHH-HHhhchhhhHH----HHHHHHHHHHHHHhcCCCC
Confidence 3355555554554432111245555654 5667884 332 5678999999999887554
No 41
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=30.38 E-value=59 Score=28.39 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=21.9
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHHH
Q 018647 158 YDFMCFFLSSHRLDLYRSIDLRCED 182 (352)
Q Consensus 158 yd~~~~~L~~~R~~L~~rI~~Rvd~ 182 (352)
.+|.++||.+|.+.|.+|+..|-..
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~~ 114 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKGH 114 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccCC
Confidence 4688999999999999999999643
No 42
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=29.24 E-value=1.2e+02 Score=27.51 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCceEEEEEeCCHHHHH
Q 018647 94 SLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLY 173 (352)
Q Consensus 94 ~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~L~~~R~~L~ 173 (352)
+-|-=|-.+|+-.||-+...|..+-+++.= .--+.+.--++|.|.+|-..||
T Consensus 56 ~c~i~DEdkv~D~Le~~m~~Gg~IVDyHgC----------------------------d~FperwfdlVvVLr~~~s~LY 107 (176)
T KOG3347|consen 56 KCHILDEDKVLDELEPLMIEGGNIVDYHGC----------------------------DFFPERWFDLVVVLRTPNSVLY 107 (176)
T ss_pred cCccccHHHHHHHHHHHHhcCCcEEeeccc----------------------------CccchhheeEEEEEecCchHHH
Confidence 345568889999999888888777666420 0011122235678999999999
Q ss_pred HHHHHHH
Q 018647 174 RSIDLRC 180 (352)
Q Consensus 174 ~rI~~Rv 180 (352)
.|+..|.
T Consensus 108 ~RL~sRg 114 (176)
T KOG3347|consen 108 DRLKSRG 114 (176)
T ss_pred HHHHHcC
Confidence 9999885
No 43
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function.
Probab=29.24 E-value=73 Score=26.61 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
|+..=+..|++.|.+.+-.||.+|+++|-.|
T Consensus 73 T~~ril~~ARkKiA~ALv~Gk~~i~i~GG~y 103 (106)
T PF02001_consen 73 TFQRILESARKKIADALVEGKAIIIIEGGNY 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEEcCCcE
Confidence 4555678899999999999997777776554
No 44
>PRK14556 pyrH uridylate kinase; Provisional
Probab=28.62 E-value=47 Score=31.83 Aligned_cols=16 Identities=63% Similarity=0.941 Sum_probs=13.5
Q ss_pred HHHhcCCCeEEEcCCh
Q 018647 25 DVLKKGRVPIVTGGTG 40 (352)
Q Consensus 25 ~I~~rgkvPIvVGGTg 40 (352)
..++.|+++|++||||
T Consensus 131 ~~l~~g~vvi~~gg~G 146 (249)
T PRK14556 131 QELAKGRVLIFAGGTG 146 (249)
T ss_pred HHHhCCCEEEEECCCC
Confidence 3456799999999998
No 45
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=28.56 E-value=32 Score=29.87 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCeEE---EcCChhHHHHHH
Q 018647 20 RHATKDVLKKGRVPIV---TGGTGLYLRWFI 47 (352)
Q Consensus 20 ~~~i~~I~~rgkvPIv---VGGTglYl~aLl 47 (352)
...|+.++..|+++|+ ++|...+.+++.
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~ 111 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFP 111 (180)
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhCC
Confidence 5778899999999998 677777777763
No 46
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.75 E-value=4.4 Score=40.37 Aligned_cols=101 Identities=22% Similarity=0.149 Sum_probs=60.8
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhh-----CCCCC
Q 018647 158 YDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQ-----QGGTS 232 (352)
Q Consensus 158 yd~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~-----~~g~~ 232 (352)
++|.+++....+..++.-|.-++..|+.+..+++-+ .|-+.. .+....+.++|+++....+.+.++. ..+..
T Consensus 172 ~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~-k~d~~~--~~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~~~~ 248 (348)
T KOG1384|consen 172 RDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTD-KWDLAR--KELLEKAIEAIKENTRRLAKRQKRKIEKLFLPRKW 248 (348)
T ss_pred HHHhhhhhcCccccchhccCcHHHhhhhhccccccc-hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 445555555444447777777777777644443333 111111 1112357889999998888765542 11212
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCcee
Q 018647 233 STGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHW 267 (352)
Q Consensus 233 s~~e~~~~le~i~~~TRqyAKRQ~TWfR~~~~~~W 267 (352)
+. .-...+...+.||+|.+|++.+..+.|
T Consensus 249 ~i------~~vdaT~~~~~~~~~~s~~~~~~~~~w 277 (348)
T KOG1384|consen 249 DI------HRVDATEVFLFAKNRSSWFRIEQREIW 277 (348)
T ss_pred cc------cccchHHHHHHhhhhhHHhhhccchhh
Confidence 11 122357788999999999998888888
No 47
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=27.61 E-value=94 Score=27.27 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEc
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTG 37 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVG 37 (352)
|+..+...-+|-.++.+.+.++.++|...|+.++|||
T Consensus 1 ~~~~~~~~~is~~~i~~~i~~la~~I~~~~~~d~vvg 37 (156)
T PRK09177 1 MSLMSKKFPVSWDQLHRDARALAWRLLPAGQWKGIIA 37 (156)
T ss_pred CCCccccEEcCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4455554568999999999999999988777777775
No 48
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=26.90 E-value=73 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcC-CCeEEEcCChh
Q 018647 18 DARHATKDVLKKG-RVPIVTGGTGL 41 (352)
Q Consensus 18 ~A~~~i~~I~~rg-kvPIvVGGTgl 41 (352)
.+.++++.+.+++ ++|||+||..-
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcch
Confidence 4566666666655 49999999763
No 49
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=26.76 E-value=1e+02 Score=30.11 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.9
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
.+...++....+.+.+++.+|+.||+.||=+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~pi~lGGDHs 113 (305)
T COG0010 82 GDLEDAVDAIEEAVAELLSAGAFPIVLGGDHS 113 (305)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeEEECCcch
Confidence 47788888888888899999999999999765
No 50
>PF09823 DUF2357: Domain of unknown function (DUF2357); InterPro: IPR018633 This entry was previously the N-terminal portion of DUF524 (IPR007505 from INTERPRO) before it was split into two. This domain has no known function. It is predicted to adopt an all beta secondary structure pattern followed by mainly alpha-helical structures [].
Probab=25.61 E-value=78 Score=29.21 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=10.2
Q ss_pred ccccccHHHHHHH
Q 018647 209 ATRAIGYRQAMEY 221 (352)
Q Consensus 209 a~~aIGYkE~~~y 221 (352)
..++=||||++.+
T Consensus 235 Lq~~~GYr~vy~~ 247 (248)
T PF09823_consen 235 LQKRPGYREVYRY 247 (248)
T ss_pred hcCCccHHHHHhh
Confidence 4567899999865
No 51
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=25.26 E-value=73 Score=29.53 Aligned_cols=28 Identities=14% Similarity=0.564 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcC-CCeEEEcCChh
Q 018647 14 KFFEDARHATKDVLKKG-RVPIVTGGTGL 41 (352)
Q Consensus 14 ~F~~~A~~~i~~I~~rg-kvPIvVGGTgl 41 (352)
.-...+.+.++.+.+.| ++||+|||.++
T Consensus 151 ~~~~~~~~~i~~L~~~~~~~~i~vGG~~~ 179 (213)
T cd02069 151 PSLDEMVEVAEEMNRRGIKIPLLIGGAAT 179 (213)
T ss_pred ccHHHHHHHHHHHHhcCCCCeEEEEChhc
Confidence 34455667777776655 69999999765
No 52
>PRK12353 putative amino acid kinase; Reviewed
Probab=25.15 E-value=54 Score=32.27 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCeEEEcCChhHH
Q 018647 20 RHATKDVLKKGRVPIVTGGTGLYL 43 (352)
Q Consensus 20 ~~~i~~I~~rgkvPIvVGGTglYl 43 (352)
.++++.+++.|.+||+.||+|.-+
T Consensus 175 ~~~i~~lL~~g~IpV~~g~gg~Pi 198 (314)
T PRK12353 175 IEAIKTLVDAGQVVIAAGGGGIPV 198 (314)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCE
Confidence 588899999999999999987644
No 53
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=24.35 E-value=66 Score=32.78 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 17 EDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 17 ~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
+.|.+++..+.++| +||||||++.
T Consensus 53 ~~~~~~i~~~~~~~-~~vvvgGc~a 76 (430)
T TIGR01125 53 QESIDTIGELADAG-KKVIVTGCLV 76 (430)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCcc
Confidence 44788888887775 5899999965
No 54
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=24.35 E-value=2e+02 Score=26.73 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCC--C----CHHHHHHHHH
Q 018647 209 ATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAA--R----PLENVLNYII 282 (352)
Q Consensus 209 a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~--~----~~e~i~~~i~ 282 (352)
-.++|||||+--||+. +..+++ +.++ |.=+.|..+...+.-.+.+ . ..|+++..|.
T Consensus 125 nikGiGyKEASHFLRN-------VG~~D~-AIlD----------rHIlr~l~r~g~i~e~~kt~t~K~YLe~E~ilr~ia 186 (210)
T COG1059 125 NIKGIGYKEASHFLRN-------VGFEDL-AILD----------RHILRWLVRYGLIDENPKTLTRKLYLEIEEILRSIA 186 (210)
T ss_pred HcccccHHHHHHHHHh-------cChhHH-HHHH----------HHHHHHHHHhcccccCcccccHHHHHHHHHHHHHHH
Confidence 3689999999999973 333443 1222 4456777776544433211 1 1577887777
Q ss_pred HHhhcC
Q 018647 283 TAYHDS 288 (352)
Q Consensus 283 ~~~~~~ 288 (352)
.++.-.
T Consensus 187 e~~g~s 192 (210)
T COG1059 187 EEVGIS 192 (210)
T ss_pred HHhCCC
Confidence 776533
No 55
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=24.18 E-value=63 Score=30.82 Aligned_cols=17 Identities=59% Similarity=0.810 Sum_probs=13.9
Q ss_pred HHHhcCCCeEEEcCChh
Q 018647 25 DVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 25 ~I~~rgkvPIvVGGTgl 41 (352)
+.+++|+++|..||||-
T Consensus 120 ~~l~~grVvIf~gGtg~ 136 (238)
T COG0528 120 RHLEKGRVVIFGGGTGN 136 (238)
T ss_pred HHHHcCCEEEEeCCCCC
Confidence 34567999999999974
No 56
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=23.81 E-value=47 Score=31.29 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.2
Q ss_pred EEcCChhHHHHHHcCC
Q 018647 35 VTGGTGLYLRWFIYGK 50 (352)
Q Consensus 35 vVGGTglYl~aLl~G~ 50 (352)
+.+|||.||++|....
T Consensus 170 cskGT~~YIRsL~~Di 185 (226)
T cd02868 170 CINETQEYLRKLIHEI 185 (226)
T ss_pred EECCCHHHHHHHHHHH
Confidence 3589999999999754
No 57
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=23.77 E-value=79 Score=27.47 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=19.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHH
Q 018647 159 DFMCFFLSSHRLDLYRSIDLR 179 (352)
Q Consensus 159 d~~~~~L~~~R~~L~~rI~~R 179 (352)
++.+|||+++.+.+.+||..|
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R 131 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAAR 131 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHc
Confidence 567899999999999999988
No 58
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.59 E-value=89 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEcCCh
Q 018647 16 FEDARHATKDVLKK-GRVPIVTGGTG 40 (352)
Q Consensus 16 ~~~A~~~i~~I~~r-gkvPIvVGGTg 40 (352)
...+.++++.+.+. .+++||+||..
T Consensus 65 ~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 65 LPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 34556777776554 35899999976
No 59
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=23.35 E-value=84 Score=30.20 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=9.4
Q ss_pred CeE-EEcCChhHH
Q 018647 32 VPI-VTGGTGLYL 43 (352)
Q Consensus 32 vPI-vVGGTglYl 43 (352)
.+| |+||||+|=
T Consensus 22 ~~i~iI~GsGl~~ 34 (272)
T PRK08202 22 PEIGLILGSGLGA 34 (272)
T ss_pred CCEEEEeCCchhH
Confidence 444 889999984
No 60
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=22.85 E-value=79 Score=28.08 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.4
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHH
Q 018647 158 YDFMCFFLSSHRLDLYRSIDLRCE 181 (352)
Q Consensus 158 yd~~~~~L~~~R~~L~~rI~~Rvd 181 (352)
.+|.++||.++.+.|.+|+.+|-.
T Consensus 98 ~~~~~v~l~a~~~~l~~Rl~~R~~ 121 (176)
T PRK09825 98 PNVHFLWLDGDYETILARMQRRAG 121 (176)
T ss_pred CCEEEEEEeCCHHHHHHHHhcccC
Confidence 468899999999999999999963
No 61
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.81 E-value=1.5e+02 Score=25.48 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=31.7
Q ss_pred CccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 2 SAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 2 ~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
|.-|.....++.+|.+...++|+.+.+.|..+|+++-+..+
T Consensus 68 G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~ 108 (183)
T cd04501 68 GTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVD 108 (183)
T ss_pred ccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcC
Confidence 44455555689999999999999999888888888655543
No 62
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.69 E-value=76 Score=28.87 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhc---CCCeEEEcCChh
Q 018647 17 EDARHATKDVLKK---GRVPIVTGGTGL 41 (352)
Q Consensus 17 ~~A~~~i~~I~~r---gkvPIvVGGTgl 41 (352)
..+.++++.+.+. ++++|+|||.-+
T Consensus 150 ~~~~~~i~~l~~~~~~~~v~i~vGG~~~ 177 (197)
T TIGR02370 150 YGQKDINDKLKEEGYRDSVKFMVGGAPV 177 (197)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEChhc
Confidence 4456677777666 359999999765
No 63
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=22.17 E-value=82 Score=27.93 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCChhHHHHH
Q 018647 17 EDARHATKDVLKKGRVPIVTGGTGLYLRWF 46 (352)
Q Consensus 17 ~~A~~~i~~I~~rgkvPIvVGGTglYl~aL 46 (352)
++|.++++ ..++..+|.|||.+....=
T Consensus 12 ~ea~~ll~---~~~~a~~vaGgT~l~~~~~ 38 (171)
T PF00941_consen 12 EEALELLA---KGPDARIVAGGTDLGVQMR 38 (171)
T ss_dssp HHHHHHHH---HGTTEEEESS-TTHHHHHH
T ss_pred HHHHHHHh---cCCCCEEEeCCCccchhcc
Confidence 45555555 5688999999999976543
No 64
>PRK14558 pyrH uridylate kinase; Provisional
Probab=20.90 E-value=91 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEcCCh
Q 018647 15 FFEDARHATKDVLKKGRVPIVTGGTG 40 (352)
Q Consensus 15 F~~~A~~~i~~I~~rgkvPIvVGGTg 40 (352)
+.......+..+++.|.+||+.|++|
T Consensus 103 ~~~~~~~~i~~ll~~g~vpV~~G~~~ 128 (231)
T PRK14558 103 VEPINYDDIELYFRAGYIVIFAGGTS 128 (231)
T ss_pred hhhhhHHHHHHHHHCCCEEEEECCCC
Confidence 33445677888899999999999864
No 65
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.43 E-value=1.2e+02 Score=26.10 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcC--CCeEEEcCCh
Q 018647 19 ARHATKDVLKKG--RVPIVTGGTG 40 (352)
Q Consensus 19 A~~~i~~I~~rg--kvPIvVGGTg 40 (352)
..++++.+.++| .+||+|||..
T Consensus 67 ~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 67 CKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHCCCCCCeEEEECCC
Confidence 345555555554 6999999973
No 66
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.27 E-value=1.8e+02 Score=25.01 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=26.9
Q ss_pred CccCCCC-ccCHHHHHHHHHHHHHHHHhcCCCeEEEc
Q 018647 2 SAKHLNT-YYSVGKFFEDARHATKDVLKKGRVPIVTG 37 (352)
Q Consensus 2 ~~~dp~e-~ysv~~F~~~A~~~i~~I~~rgkvPIvVG 37 (352)
|.=|... ..++.+|.+....+|+.+...+..+|+++
T Consensus 76 G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 76 GGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3444544 68999999999999999996666555554
No 67
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=20.16 E-value=84 Score=26.96 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=18.8
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHh
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDM 183 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~M 183 (352)
-++|+|.++.+.+.+||.+|-..+
T Consensus 69 dl~IYL~~~~e~~~~RI~kRgR~~ 92 (146)
T PF01712_consen 69 DLIIYLDASPETCLERIKKRGREE 92 (146)
T ss_dssp SEEEEEE--HHHHHHHHHHCTTGG
T ss_pred CeEEEEeCCHHHHHHHHHHhCCch
Confidence 357899999999999999997665
Done!