Query 018647
Match_columns 352
No_of_seqs 155 out of 1089
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3exa_A TRNA delta(2)-isopenten 100.0 1.4E-64 4.8E-69 489.6 30.0 241 1-286 63-306 (322)
2 3foz_A TRNA delta(2)-isopenten 100.0 2.5E-64 8.7E-69 487.0 27.3 236 1-282 70-308 (316)
3 3crm_A TRNA delta(2)-isopenten 100.0 7.9E-59 2.7E-63 451.4 22.4 247 1-281 65-316 (323)
4 3eph_A TRNA isopentenyltransfe 100.0 7.1E-59 2.4E-63 462.9 18.8 242 1-287 62-329 (409)
5 3d3q_A TRNA delta(2)-isopenten 100.0 4.8E-55 1.7E-59 427.4 21.1 238 1-285 67-311 (340)
6 3a8t_A Adenylate isopentenyltr 100.0 1E-38 3.6E-43 311.5 14.7 184 1-271 100-302 (339)
7 2ze6_A Isopentenyl transferase 99.6 3.3E-15 1.1E-19 139.2 14.0 151 4-261 64-224 (253)
8 2a0m_A Arginase superfamily pr 59.4 7.8 0.00027 36.6 4.3 32 11-42 93-124 (316)
9 3niq_A 3-guanidinopropionase; 58.2 11 0.00037 35.8 5.1 41 9-49 95-135 (326)
10 1gq6_A Proclavaminate amidino 56.6 11 0.00037 35.5 4.7 34 9-42 90-123 (313)
11 3nio_A Guanidinobutyrase; PA14 56.4 13 0.00043 35.2 5.1 34 9-42 98-131 (319)
12 3pzl_A Agmatine ureohydrolase; 54.8 16 0.00056 34.5 5.6 43 9-51 93-135 (313)
13 3lhl_A Putative agmatinase; pr 54.5 14 0.00048 34.3 5.1 32 11-42 69-100 (287)
14 4g3h_A Arginase (ROCF); rossma 53.9 8.6 0.00029 36.6 3.5 32 11-42 61-93 (330)
15 1woh_A Agmatinase; alpha/beta 53.0 11 0.00037 35.3 4.0 43 9-51 90-132 (305)
16 2cev_A Protein (arginase); enz 51.7 13 0.00044 34.5 4.3 31 12-42 71-101 (299)
17 1pq3_A Arginase II, mitochondr 50.0 12 0.00042 34.9 3.9 32 11-42 68-99 (306)
18 4dz4_A Agmatinase; hydrolase; 50.0 12 0.0004 35.6 3.8 33 10-42 109-141 (324)
19 2aeb_A Arginase 1; hydrolase, 46.9 14 0.00049 34.7 3.9 31 11-41 72-102 (322)
20 3sl1_A Arginase; metallohydrol 45.9 17 0.00058 35.9 4.3 33 10-42 165-197 (413)
21 3m1r_A Formimidoylglutamase; s 44.9 20 0.00069 33.8 4.5 34 9-42 97-132 (322)
22 2we5_A Carbamate kinase 1; arg 40.8 9.1 0.00031 35.9 1.4 22 20-41 172-193 (310)
23 2yxb_A Coenzyme B12-dependent 36.4 25 0.00084 29.7 3.3 28 14-41 81-110 (161)
24 1y80_A Predicted cobalamin bin 35.8 25 0.00085 30.6 3.4 26 16-41 153-181 (210)
25 3ezx_A MMCP 1, monomethylamine 33.5 22 0.00075 31.5 2.6 27 15-41 158-187 (215)
26 3kzf_A Carbamate kinase; argin 33.4 14 0.00048 35.2 1.4 21 21-41 179-199 (317)
27 1e19_A Carbamate kinase-like c 32.8 14 0.00048 34.7 1.3 23 19-41 175-197 (314)
28 2ef5_A Arginase; TTHA1496, str 32.3 18 0.00063 33.3 2.0 30 12-42 69-98 (290)
29 3jug_A Beta-mannanase; TIM-bar 31.8 51 0.0017 31.3 5.1 36 6-41 148-184 (345)
30 2e9y_A Carbamate kinase; trans 30.9 18 0.0006 34.0 1.6 23 19-41 175-197 (316)
31 1ivn_A Thioesterase I; hydrola 27.7 83 0.0028 25.7 5.2 36 2-37 71-106 (190)
32 1qe5_A Pentosyltransferase; en 26.2 68 0.0023 29.4 4.7 8 35-42 34-41 (266)
33 1vmk_A Purine nucleoside phosp 26.2 32 0.0011 31.9 2.5 28 15-42 13-43 (277)
34 1xfk_A Formimidoylglutamase; f 25.7 62 0.0021 30.5 4.4 31 10-41 98-128 (336)
35 3odg_A Xanthosine phosphorylas 24.9 37 0.0013 31.7 2.6 8 35-42 38-45 (287)
36 2whl_A Beta-mannanase, baman5; 24.6 86 0.0029 28.2 5.1 36 6-41 125-161 (294)
37 1ccw_A Protein (glutamate muta 24.5 23 0.0008 28.9 1.1 27 14-40 66-94 (137)
38 3ek6_A Uridylate kinase; UMPK 24.2 41 0.0014 30.2 2.7 19 22-40 121-139 (243)
39 2jjx_A Uridylate kinase, UMP k 22.8 45 0.0015 30.0 2.7 19 21-40 125-143 (255)
40 4a7w_A Uridylate kinase; trans 22.5 46 0.0016 29.8 2.7 19 22-40 120-138 (240)
41 1h1n_A Endo type cellulase ENG 22.4 1.1E+02 0.0036 27.9 5.3 31 11-41 138-170 (305)
42 2i2x_B MTAC, methyltransferase 22.4 50 0.0017 29.8 3.0 24 18-41 190-214 (258)
43 3qr3_A Endoglucanase EG-II; TI 21.5 1.1E+02 0.0038 28.8 5.3 31 11-41 154-186 (340)
44 3kb2_A SPBC2 prophage-derived 21.4 54 0.0018 26.3 2.7 20 160-179 96-115 (173)
45 2rhm_A Putative kinase; P-loop 21.2 81 0.0028 25.8 3.9 24 158-181 104-127 (193)
46 3kts_A Glycerol uptake operon 21.0 35 0.0012 30.1 1.5 18 21-38 140-157 (192)
No 1
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.4e-64 Score=489.60 Aligned_cols=241 Identities=28% Similarity=0.452 Sum_probs=207.8
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCC-CCHHHHHHHHHHHHHHhhCCChHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPEIIAEVNSELADLQRDGDWYA 79 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~-~~~eir~~~~~~l~~l~~~~~~~~ 79 (352)
+|+++|.+.||+++|+++|.++|++|+++|++|||||||||||+||++|+.+.|. .++++|++++++++.. |+ +
T Consensus 63 id~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~----g~-~ 137 (322)
T 3exa_A 63 IDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSY----GV-Q 137 (322)
T ss_dssp SSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHS----CH-H
T ss_pred eccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhc----CH-H
Confidence 6899999999999999999999999999999999999999999999999977776 6788998887777653 44 6
Q ss_pred HHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCC
Q 018647 80 AVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDY 158 (352)
Q Consensus 80 ~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 158 (352)
+++..|+++||. |++|||||++||+|||||+..||+|+|+++.. + ....++|
T Consensus 138 ~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~~S~~~~~------~---------------------~~~~~~~ 190 (322)
T 3exa_A 138 ALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARH------E---------------------EETPSPY 190 (322)
T ss_dssp HHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC-----------------------------------------CCS
T ss_pred HHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCCHHHHhhh------c---------------------cCCCCCC
Confidence 789999999995 88999999999999999999999999998532 1 0124579
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHH
Q 018647 159 DFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFY 238 (352)
Q Consensus 159 d~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~ 238 (352)
++++|||++||+.||+||++||+.||+ +||++||++|++.| .++ .+++|||||||+++||. |++|++++
T Consensus 191 ~~~~i~L~~~R~~L~~RI~~Rvd~Ml~--~Gl~eEv~~L~~~~-~~~-~~a~~aIGYkE~~~yL~------G~~sl~ea- 259 (322)
T 3exa_A 191 NLVMIGLTMERDVLYDRINRRVDQMVE--EGLIDEAKKLYDRG-IRD-CQSVQAIGYKEMYDYLD------GNVTLEEA- 259 (322)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHTT-CCS-STGGGSTTTHHHHHHHH------TSSCHHHH-
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcC-CCc-CccceeeeHHHHHHHHC------CCCCHHHH-
Confidence 999999999999999999999999999 99999999999998 665 58999999999999998 99999875
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC-CHHHHHHHHHHHhh
Q 018647 239 AFLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIITAYH 286 (352)
Q Consensus 239 ~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~-~~e~i~~~i~~~~~ 286 (352)
++.++++||||||||+||||+++.++|+|++. ..+.+++.|.+.+.
T Consensus 260 --ie~i~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~~~~~i~~~i~~~~~ 306 (322)
T 3exa_A 260 --IDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDVDFDKKIMEIHNFIA 306 (322)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999865 46677777777654
No 2
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=2.5e-64 Score=487.02 Aligned_cols=236 Identities=30% Similarity=0.491 Sum_probs=211.8
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|++.||+++|+++|.++|++|+++|++|||||||||||+||++|+..+|+.++++|++++.++++. +| ++
T Consensus 70 id~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~----g~-~~ 144 (316)
T 3foz_A 70 LDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQ----GW-ES 144 (316)
T ss_dssp SSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHH----HH-HH
T ss_pred eccCCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhc----CH-HH
Confidence 68999999999999999999999999999999999999999999999999999999999999988887764 44 57
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
++..|+++||. |++|||||++||+|||||+..||+|+|+++... ...++|+
T Consensus 145 l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~~~TG~~~S~~~~~~----------------------------~~~~~~~ 196 (316)
T 3foz_A 145 LHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTS----------------------------GDALPYQ 196 (316)
T ss_dssp HHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHSSCHHHHHTSC----------------------------CCCCSSE
T ss_pred HHHHHHHhCHHHHhhCCCccHHHHHHHHHHHHHHCCCHHHHhhcc----------------------------CCCCCCc
Confidence 88889999996 889999999999999999999999999985321 2245799
Q ss_pred eEEEEEeC-CHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcC-CCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHH
Q 018647 160 FMCFFLSS-HRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEG-LLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 237 (352)
Q Consensus 160 ~~~~~L~~-~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g-~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~ 237 (352)
+++|+|.+ ||++||+||++||+.||+ +||++||++|++.| +.++ .+++|||||||+++||. |++|++++
T Consensus 197 ~~~i~L~~~~R~~L~~RI~~Rvd~Ml~--~Gl~eEv~~L~~~~~~~~~-~~~~~aIGYkE~~~yL~------G~~s~~ea 267 (316)
T 3foz_A 197 VHQFAIAPASRELLHQRIEQRFHQMLA--SGFEAEVRALFARGDLHTD-LPSIRCVGYRQMWSYLE------GEISYDEM 267 (316)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCCTT-STTTTSTTHHHHHHHHH------TSSCHHHH
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHccCCCcc-CccceeeehhhHHHHhc------CCCCHHHH
Confidence 99999999 999999999999999999 99999999999997 6665 58999999999999998 99998875
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCCHHHHHHHHH
Q 018647 238 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYII 282 (352)
Q Consensus 238 ~~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~~e~i~~~i~ 282 (352)
++.++++||||||||+||||+++.++|+|.+. .+.+.+.+.
T Consensus 268 ---i~~~~~~TR~yAKRQ~TWfR~~~~~~w~~~~~-~~~~~~~~~ 308 (316)
T 3foz_A 268 ---VYRGVCATRQLAKRQITWLRGWEGVHWLDSEK-PEQARDEVL 308 (316)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSCSSCEEEETTC-HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCCCCCeEeCCcC-hHHHHHHHH
Confidence 89999999999999999999999999999875 344444433
No 3
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=7.9e-59 Score=451.45 Aligned_cols=247 Identities=30% Similarity=0.479 Sum_probs=148.5
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA 80 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~ 80 (352)
+|+++|.+.|+++.|++.|.++|++++++|++||+|||||+|++||++|+...|..++++|++++.++++ .+| ++
T Consensus 65 id~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~----~g~-~~ 139 (323)
T 3crm_A 65 IDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQA----EGW-EA 139 (323)
T ss_dssp SSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------
T ss_pred eeccCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHH----cCH-HH
Confidence 5789999999999999999999999999999999999999999999999988888888888887766554 244 46
Q ss_pred HHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 81 VEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 81 l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
+|..|+++||. |++|||||++||+|||||+..||+|+|+++... . .+. ..++.+....++|+
T Consensus 140 l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~~~tG~~~s~~~~~~------~-~~~----------~~~~~~~~~~~~~~ 202 (323)
T 3crm_A 140 LHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQ------S-AEK----------ADFDASGRNQLPYT 202 (323)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred HHHHHHHhCHHHHhhcCCCCHHHHHHHHHHHHHHCCCHHHHHhhc------c-ccc----------cccccccccCCCCc
Confidence 78889999996 889999999999999999999999999985321 0 000 00000001124699
Q ss_pred eEEEEEeCC-HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcC-CCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHH
Q 018647 160 FMCFFLSSH-RLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEG-LLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEF 237 (352)
Q Consensus 160 ~~~~~L~~~-R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g-~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~ 237 (352)
+++|+|+++ |++||+||++||+.||+ +||++||++|++.| +.++ .+++|||||||+++||. |+++++++
T Consensus 203 ~~~~~L~~~~r~~L~~RI~~Rvd~M~~--~Gl~~Ev~~L~~~~~~~~~-~~~~~aIGyke~~~yl~------g~~~~~ea 273 (323)
T 3crm_A 203 VAQLAIAPEQRQVLHARIAQRFRQMLE--QGFIAEVEALHARSDLHAG-LPSIRAVGYRQVWDYLD------GKLSYAEM 273 (323)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH--TTHHHHHHHHHTCTTCCTT-SSGGGSTTHHHHHHHHT------TSSCHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcCCCCCC-CcchheecHHHHHHHHc------CCCCHHHH
Confidence 999999996 99999999999999999 99999999999887 5554 58999999999999996 99998875
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCCC--HHHHHHHH
Q 018647 238 YAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARP--LENVLNYI 281 (352)
Q Consensus 238 ~~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~--~e~i~~~i 281 (352)
++.++++||||||||+||||+++.++|+|.+++ .+++++.|
T Consensus 274 ---i~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~ 316 (323)
T 3crm_A 274 ---TERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYL 316 (323)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCSSCEEEETTCSCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCCCCCeEecCCCchHHHHHHHHH
Confidence 899999999999999999999999999997543 34444433
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=7.1e-59 Score=462.89 Aligned_cols=242 Identities=24% Similarity=0.371 Sum_probs=199.7
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCC-CCHHHHHHHHHHHHHHhhCCChHH
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPEIIAEVNSELADLQRDGDWYA 79 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~-~~~eir~~~~~~l~~l~~~~~~~~ 79 (352)
||+++|.+.||+++|.++|.++|++|+++|++|||||||||||+||+.|+...|+ .+++++... ..++ .+|| +
T Consensus 62 id~~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~-~~~~----~~g~-~ 135 (409)
T 3eph_A 62 MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQL-DILE----STDP-D 135 (409)
T ss_dssp CSCBCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHH-HHHT----CSSS-S
T ss_pred CCccChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHH-HHHh----ccCH-H
Confidence 6889999999999999999999999999999999999999999999999866554 445555432 2222 3444 4
Q ss_pred HHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCC
Q 018647 80 AVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDY 158 (352)
Q Consensus 80 ~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 158 (352)
+++..|+++||. |++|||||.+||+||||||..||+|+|++... + ...++|
T Consensus 136 ~L~~~L~~~DP~~A~rihpnd~~Ri~RALEV~~~TG~~~S~~~~~------~----------------------~~~~~~ 187 (409)
T 3eph_A 136 VIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE------Q----------------------KITLKF 187 (409)
T ss_dssp SHHHHHHHSCHHHHTTSCTTCHHHHHHHHHHHHHHCSCHHHHHHT------C----------------------CCCCSS
T ss_pred HHHHHHHHhCHHHHHhcCcccHHHHHHHHHHHHHHCCCHHHHHhh------c----------------------cCCCCc
Confidence 688889999995 89999999999999999999999999988532 1 224579
Q ss_pred ceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCC------CCccccccccHHHHHHHHHHhhhCCC--
Q 018647 159 DFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLP------NSNSATRAIGYRQAMEYLLRCRQQGG-- 230 (352)
Q Consensus 159 d~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~------~~~~a~~aIGYkE~~~yL~~~~~~~g-- 230 (352)
++++|||+++|++||+||++||+.||+ +||++||+.|++.+... ...+++|||||||+++||. |
T Consensus 188 ~~~~i~L~~~R~~L~~RI~~Rvd~Ml~--~GlleEv~~L~~~~~~~~~~~~~~~~~~~~aIGYkE~~~yL~------g~~ 259 (409)
T 3eph_A 188 DTLFLWLYSKPEPLFQRLDDRVDDMLE--RGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT------GKT 259 (409)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHTTTTCCGGGTTSGGGGSTTTGGGGGGGC---------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHhccccccccccccccchhcccHHHHHHHHc------CCC
Confidence 999999999999999999999999999 99999999999874221 1247999999999999996 5
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHhHHHHHhcCC------CCceeecCCCC-------HHHHHHHHHHHhhc
Q 018647 231 ---TSSTGEFYAFLAEFQKASRNFAKRQLTWFRNE------RIYHWLNAARP-------LENVLNYIITAYHD 287 (352)
Q Consensus 231 ---~~s~~e~~~~le~i~~~TRqyAKRQ~TWfR~~------~~~~Wid~~~~-------~e~i~~~i~~~~~~ 287 (352)
++++++ +++.++++||||||||+||||++ ..++|+|++++ .+..++.+..++.+
T Consensus 260 ~~~e~~l~e---aie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~~~W~~~V~~pa~~iv~~fl~~ 329 (409)
T 3eph_A 260 DDNTVKLED---CIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNASQRAIAISNDFISN 329 (409)
T ss_dssp ----CCHHH---HHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCTTTCTTTTHHHHHHHHHHHHTT
T ss_pred cccccCHHH---HHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 467766 48999999999999999999998 57999998753 33344555555554
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=4.8e-55 Score=427.38 Aligned_cols=238 Identities=27% Similarity=0.447 Sum_probs=201.5
Q ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCC-CCHH----HHHHHHHHHHHHhhCC
Q 018647 1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPE----IIAEVNSELADLQRDG 75 (352)
Q Consensus 1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~-~~~e----ir~~~~~~l~~l~~~~ 75 (352)
+++++|.+.|++++|.+.|+..+.++.++|++||||||||+|+++++.|++..|. .+++ ++..+.. ++ ..
T Consensus 67 ~di~~~~~~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r-~~----~~ 141 (340)
T 3d3q_A 67 IDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKE-LE----HL 141 (340)
T ss_dssp SSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHT-TS----SS
T ss_pred HHHhCCccccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHH-HH----hc
Confidence 4678899999999999999999999999999999999999999999999977777 7887 6655543 32 33
Q ss_pred ChHHHHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCC
Q 018647 76 DWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPK 154 (352)
Q Consensus 76 ~~~~~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (352)
|+ +.++..|+.+||. |+.|||||.+||+|||||+..||+|+|++... + ..
T Consensus 142 G~-~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALEv~~~tG~~~s~~~~~------~----------------------~~ 192 (340)
T 3d3q_A 142 NN-NKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKV------Q----------------------QF 192 (340)
T ss_dssp CH-HHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHCSCSHHHHHH------H----------------------HH
T ss_pred CH-HHHHHHHHhhCcHHHhhcCccCchhhhhHHHHHHHhCCChHHHhhh------c----------------------cC
Confidence 55 4788899999996 88999999999999999999999999987421 0 01
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCH
Q 018647 155 DLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSST 234 (352)
Q Consensus 155 ~~~yd~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~ 234 (352)
..+|++++|||++||++||+||++||+.||+ +||++||++|++.|+. + .+++|||||||+++||. |++|+
T Consensus 193 ~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~--~Gl~~Ev~~L~~~~~~-~-~~~~~aIGyke~~~yl~------g~~~~ 262 (340)
T 3d3q_A 193 TENYDTLLIGIEMSRETLYLRINKRVDIMLG--HGLFNEVQHLVEQGFE-A-SQSMQAIGYKELVPVIK------GNISM 262 (340)
T ss_dssp SBCSEEEEEEEECCHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHTTCT-T-SSGGGSTTTTTHHHHHH------TSSCH
T ss_pred CCCCceEEEEeCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHcCCC-c-chhhhhccHHHHHHHHc------CCCCH
Confidence 1259999999999999999999999999999 9999999999998864 3 58999999999999998 99998
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC-CHHHHHHHHHHHh
Q 018647 235 GEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIITAY 285 (352)
Q Consensus 235 ~e~~~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~-~~e~i~~~i~~~~ 285 (352)
+++ ++.++++||||||||+||||+++.++|+|.+. ..+.+++.|.+.+
T Consensus 263 ~ea---~~~~~~~Tr~yAKRQ~TWfr~~~~~~w~~~~~~~~~~~~~~~~~~~ 311 (340)
T 3d3q_A 263 ENA---VEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQI 311 (340)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHTCCCEEEETTTCCHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhCCCCCCeeecCcccchHHHHHHHHHHH
Confidence 875 89999999999999999999999999999643 1333444444443
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=1e-38 Score=311.52 Aligned_cols=184 Identities=17% Similarity=0.231 Sum_probs=140.1
Q ss_pred CCccCC-CCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHH
Q 018647 1 MSAKHL-NTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYA 79 (352)
Q Consensus 1 ~~~~dp-~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~ 79 (352)
+++++| .+.||+++|+++|.++|++|+++|++||+|||||+|+++++.|. ..|..
T Consensus 100 idi~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~-~~p~~----------------------- 155 (339)
T 3a8t_A 100 LGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR-FDSSG----------------------- 155 (339)
T ss_dssp SSCBCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS-CCTTC-----------------------
T ss_pred ccccCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC-CCCcc-----------------------
Confidence 588999 89999999999999999999999999999999999999999997 22321
Q ss_pred HHHHHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCc
Q 018647 80 AVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYD 159 (352)
Q Consensus 80 ~l~~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 159 (352)
+||.++. ||| ++|. .++|+
T Consensus 156 --------~d~~~a~--~~~----------------~~~~-----------------------------------~~~~~ 174 (339)
T 3a8t_A 156 --------PGVFEEG--SHS----------------VVSS-----------------------------------ELRYD 174 (339)
T ss_dssp --------C------------------------------------------------------------------CBSSE
T ss_pred --------cChhhhc--ccC----------------cccc-----------------------------------ccccC
Confidence 2332111 455 2211 13578
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCC------CccccccccHHHHHHHHHHhhhC----C
Q 018647 160 FMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPN------SNSATRAIGYRQAMEYLLRCRQQ----G 229 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~------~~~a~~aIGYkE~~~yL~~~~~~----~ 229 (352)
+++|||.++|++||+||+.|++.||+ +||++||+.|++.|.... ..+++|||||||+++||...... .
T Consensus 175 ~~~i~L~~~re~L~~RI~~R~~~Ml~--~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~ 252 (339)
T 3a8t_A 175 CCFLWVDVSVKVLTDYLAKRVDDMLE--LGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGE 252 (339)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHH--HTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCS
T ss_pred eEEEEEeCCHHHHHHHHHhhccHhhh--ccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCccccccccc
Confidence 99999999999999999999999999 999999999998874321 15899999999999999832100 0
Q ss_pred CCCC----HHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCc----eeecCC
Q 018647 230 GTSS----TGEFYAFLAEFQKASRNFAKRQLTWFRNERIY----HWLNAA 271 (352)
Q Consensus 230 g~~s----~~e~~~~le~i~~~TRqyAKRQ~TWfR~~~~~----~Wid~~ 271 (352)
+..+ ...+.++++.++++||||||||+||||++..+ +|+|++
T Consensus 253 ~~~~~~~~~~~l~eaie~ik~~TR~yAKRQ~tWfr~~~~~~w~i~~lDat 302 (339)
T 3a8t_A 253 DPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDAT 302 (339)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECH
T ss_pred ccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeeccc
Confidence 1111 22345679999999999999999999987654 557765
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.62 E-value=3.3e-15 Score=139.19 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=113.7
Q ss_pred cCCCC-ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHHHH
Q 018647 4 KHLNT-YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVE 82 (352)
Q Consensus 4 ~dp~e-~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~l~ 82 (352)
.+|.+ .|++..|.+.+..++ +++++|+.|||+||++.|+++++.+. .|
T Consensus 64 ~~~~~~~~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~-------------------------~~----- 112 (253)
T 2ze6_A 64 RPLTEGILDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSP-------------------------FW----- 112 (253)
T ss_dssp CCGGGCSCCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCT-------------------------TT-----
T ss_pred eccccccccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcc-------------------------cc-----
Confidence 34444 799999999999999 99999999999999998887766441 01
Q ss_pred HHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCceEE
Q 018647 83 FVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMC 162 (352)
Q Consensus 83 ~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~ 162 (352)
. ..+++.+
T Consensus 113 --------------------------------------~----------------------------------~~~~~~~ 120 (253)
T 2ze6_A 113 --------------------------------------R----------------------------------SGFQWHV 120 (253)
T ss_dssp --------------------------------------T----------------------------------SSCEEEE
T ss_pred --------------------------------------c----------------------------------ccCceEE
Confidence 0 0245678
Q ss_pred EEEeCC-HHHHHHHHHHHHHHhccCCC-----CHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCC---CC
Q 018647 163 FFLSSH-RLDLYRSIDLRCEDMLPGSD-----GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGT---SS 233 (352)
Q Consensus 163 ~~L~~~-R~~L~~rI~~Rvd~Ml~~~~-----GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~---~s 233 (352)
+||.++ ++.+.+|+..|.++|+. . |+++|+..+++.... ...+...+||+|+++|+....-..+. .+
T Consensus 121 i~l~~~~~e~l~~Rl~~R~~~ml~--~~~~~~~~l~e~~~~~~~p~~--~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 196 (253)
T 2ze6_A 121 KRLRLGDSDAFLTRAKQRVAEMFA--IREDRPSLLEELAELWNYPAA--RPILEDIDGYRCAIRFARKHDLAISQLPNID 196 (253)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHC--CCSSSCCHHHHHHHHHTSTTH--HHHHTTSTTHHHHHHHHHHHTCCGGGGGGCC
T ss_pred EEecchhHHHHHHHHHHHHHHHHh--cCcccchHHHHHHHhcCCcch--HHHHHHHhhHHHHHHHHHhcCCCcchhhhhH
Confidence 999988 59999999999999976 4 999999999876211 12345589999999999643211111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcC
Q 018647 234 TGEFYAFLAEFQKASRNFAKRQLTWFRN 261 (352)
Q Consensus 234 ~~e~~~~le~i~~~TRqyAKRQ~TWfR~ 261 (352)
.+.+.++++.|+.+|++|||||++||.+
T Consensus 197 ~~~~~~~i~~i~~~~~~~a~~q~~~~~~ 224 (253)
T 2ze6_A 197 AGRHVELIEAIANEYLEHALSQERDFPQ 224 (253)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234466999999999999999988854
No 8
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=59.45 E-value=7.8 Score=36.57 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++.+..+...+.+.+++++|++||+.||-+.=
T Consensus 93 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 124 (316)
T 2a0m_A 93 TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQ 124 (316)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEECCcchh
Confidence 68888888999999999999999999998763
No 9
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=58.16 E-value=11 Score=35.81 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcC
Q 018647 9 YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYG 49 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G 49 (352)
..++.+..+...+.+.+++++|++||+.||-+.=--..+.|
T Consensus 95 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 135 (326)
T 3niq_A 95 PIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRA 135 (326)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHH
Confidence 35777888888899999999999999999988754444443
No 10
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=56.60 E-value=11 Score=35.46 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 9 YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
..++.+..+...+.+..++++|++||+.||-+.=
T Consensus 90 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 123 (313)
T 1gq6_A 90 PFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSL 123 (313)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSSEEEEEESCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchh
Confidence 3578889999999999999999999999998763
No 11
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=56.39 E-value=13 Score=35.20 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 9 YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
..++.+-.+...+.+.+++++|++||+.||-+.=
T Consensus 98 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 131 (319)
T 3nio_A 98 TFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTI 131 (319)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCEEEEECCCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEECCcchh
Confidence 3577888888889999999999999999998863
No 12
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=54.76 E-value=16 Score=34.45 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCC
Q 018647 9 YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKP 51 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~ 51 (352)
..++....+...+.+.+++++|++||+.||-+.=--..+.+..
T Consensus 93 ~~~~~~~~~~i~~~v~~~l~~g~~PivlGGdHsit~~~~~a~~ 135 (313)
T 3pzl_A 93 SEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALP 135 (313)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHhc
Confidence 4578888888899999999999999999999987777777764
No 13
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=54.51 E-value=14 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++....+...+.+.+++++|++||+.||-+.=
T Consensus 69 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 100 (287)
T 3lhl_A 69 STEQVLKEIYQETYKIVRDSKVPFMIGGEHLV 100 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeCCcchh
Confidence 67778888888999999999999999998864
No 14
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=53.91 E-value=8.6 Score=36.64 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.9
Q ss_pred CHHHHH-HHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFF-EDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~-~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++.++. +...+.+.+++++|++||+.||-+.=
T Consensus 61 ~v~~~~~~~l~~~v~~il~~g~~PivLGGdHsi 93 (330)
T 4g3h_A 61 DYYLFCKENLIPCMKEVFEKKEFPLILSSEHAN 93 (330)
T ss_dssp HHHHHHHHTHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCcchh
Confidence 455667 77888889999999999999998864
No 15
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=52.98 E-value=11 Score=35.34 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCC
Q 018647 9 YYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKP 51 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~ 51 (352)
..++.+..+...+.+.+++++|++||+.||-+.=--..+.|..
T Consensus 90 ~~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~~ 132 (305)
T 1woh_A 90 SLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFA 132 (305)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTEEEEEEEESSGGGHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEECCCccchHHHHHHHH
Confidence 3578889999999999999999999999999887666776653
No 16
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=51.71 E-value=13 Score=34.55 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 12 VGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 12 v~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
+.+..+...+.+.+++++|++||+.||-+.=
T Consensus 71 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 101 (299)
T 2cev_A 71 VAEANEKLAAAVDQVVQRGRFPLVLGGDHSI 101 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCCccc
Confidence 5577778888889999999999999998764
No 17
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=50.04 E-value=12 Score=34.85 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
++.+..+...+.+.+++++|+.||+.||-+.=
T Consensus 68 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 99 (306)
T 1pq3_A 68 SVGLANQELAEVVSRAVSDGYSCVTLGGDHSL 99 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEcCcccc
Confidence 37788888888999999999999999998753
No 18
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Probab=50.04 E-value=12 Score=35.59 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
.++.+..+...+.+.+++++|++||+.||-+.=
T Consensus 109 ~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsi 141 (324)
T 4dz4_A 109 HHPLSIKPAIVEHARTILQSDARMLTLGGDHYI 141 (324)
T ss_dssp TSGGGHHHHHHHHHHHHHTTTCEEEEEESSGGG
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEeCCcchh
Confidence 466777888889999999999999999998864
No 19
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=46.92 E-value=14 Score=34.70 Aligned_cols=31 Identities=39% Similarity=0.519 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 11 SVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
++.+..+...+.+.+++++|+.||+.||-+.
T Consensus 72 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHs 102 (322)
T 2aeb_A 72 SVGKASEQLAGKVAEVKKNGRISLVLGGDHS 102 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecCccc
Confidence 4777888888889999999999999999876
No 20
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=45.93 E-value=17 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
..+.+..+...+.+.+++++|++||+.||-+.=
T Consensus 165 ~~v~~~~~~L~~~V~~il~~G~~PIvLGGDHSI 197 (413)
T 3sl1_A 165 KEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGV 197 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCchHh
Confidence 467788888889999999999999999998864
No 21
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=44.88 E-value=20 Score=33.81 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhcCC--CeEEEcCChhH
Q 018647 9 YYSVGKFFEDARHATKDVLKKGR--VPIVTGGTGLY 42 (352)
Q Consensus 9 ~ysv~~F~~~A~~~i~~I~~rgk--vPIvVGGTglY 42 (352)
..++....+...+.+.+++++|+ +||+.||-+.=
T Consensus 97 ~~~~~~~~~~i~~~v~~~l~~g~~~~pi~lGGdHsi 132 (322)
T 3m1r_A 97 VTDIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSI 132 (322)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCTTEEEEEEESCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCceeEEeCCCccc
Confidence 45788888889999999999999 99999998763
No 22
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=40.81 E-value=9.1 Score=35.85 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCeEEEcCChh
Q 018647 20 RHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 20 ~~~i~~I~~rgkvPIvVGGTgl 41 (352)
.+.|+.+++.|.+||+.||+|.
T Consensus 172 ~~~i~~lL~~g~IpIi~Gg~Gi 193 (310)
T 2we5_A 172 AETINTLIKNDIITISCGGGGI 193 (310)
T ss_dssp HHHHHHHHHTTCEEECCGGGCE
T ss_pred HHHHHHHHHCCCEEEEECCCCC
Confidence 6788899999999999999873
No 23
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=36.35 E-value=25 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhcC--CCeEEEcCChh
Q 018647 14 KFFEDARHATKDVLKKG--RVPIVTGGTGL 41 (352)
Q Consensus 14 ~F~~~A~~~i~~I~~rg--kvPIvVGGTgl 41 (352)
.+...+.++++.+.+.| ++||+|||..+
T Consensus 81 ~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 81 AHLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp CHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 45667778888887776 59999999643
No 24
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.82 E-value=25 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcC---CCeEEEcCChh
Q 018647 16 FEDARHATKDVLKKG---RVPIVTGGTGL 41 (352)
Q Consensus 16 ~~~A~~~i~~I~~rg---kvPIvVGGTgl 41 (352)
...+.+.++.+..+| ++||+|||.++
T Consensus 153 ~~~~~~~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 153 MMNMKSTIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp THHHHHHHHHHHHTTCGGGCEEEEESTTC
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEECCCC
Confidence 455677788887776 49999999875
No 25
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.50 E-value=22 Score=31.52 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcC---CCeEEEcCChh
Q 018647 15 FFEDARHATKDVLKKG---RVPIVTGGTGL 41 (352)
Q Consensus 15 F~~~A~~~i~~I~~rg---kvPIvVGGTgl 41 (352)
-.....+.++.+.++| ++||+|||..+
T Consensus 158 ~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 158 SMLGQKDLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHTHHHHHHHHHHHTTCGGGSEEEEESSSC
T ss_pred cHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 3445677888888877 69999999865
No 26
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=33.43 E-value=14 Score=35.22 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCeEEEcCChh
Q 018647 21 HATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 21 ~~i~~I~~rgkvPIvVGGTgl 41 (352)
++|+.+++.|.+||++||.|.
T Consensus 179 ~~I~~LL~~G~IvI~aGGgGi 199 (317)
T 3kzf_A 179 GVIKTLIDNNVLVICTNGGGI 199 (317)
T ss_dssp HHHHHHHHTTCEEECCGGGCE
T ss_pred HHHHHHHHCCCEEEEeCCCCC
Confidence 688899999999999999995
No 27
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=32.78 E-value=14 Score=34.74 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCeEEEcCChh
Q 018647 19 ARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 19 A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
..+.|..+++.|.+||+.||+|.
T Consensus 175 ~~~~i~~lL~~g~IpV~~Gg~gi 197 (314)
T 1e19_A 175 EAETIKKLVERGVIVIASGGGGV 197 (314)
T ss_dssp THHHHHHHHHTTCEEECSGGGCE
T ss_pred hHHHHHHHHHCCCEEEEeCCCcc
Confidence 35678999999999999999885
No 28
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=32.26 E-value=18 Score=33.32 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcCChhH
Q 018647 12 VGKFFEDARHATKDVLKKGRVPIVTGGTGLY 42 (352)
Q Consensus 12 v~~F~~~A~~~i~~I~~rgkvPIvVGGTglY 42 (352)
+.+..+...+.+.+ +++|++||+.||-+.=
T Consensus 69 ~~~~~~~i~~~v~~-l~~g~~pi~lGGdHsi 98 (290)
T 2ef5_A 69 IRAAALVLKERLAA-LPEGVFPIVLGGDHSL 98 (290)
T ss_dssp HHHHHHHHHHHHHT-SCTTEEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHH-hhcCceEEEEcCcccc
Confidence 44666666777777 8899999999998753
No 29
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=31.79 E-value=51 Score=31.32 Aligned_cols=36 Identities=6% Similarity=0.107 Sum_probs=27.4
Q ss_pred CCCccCHHHHHHHHHHHHHHHHhcC-CCeEEEcCChh
Q 018647 6 LNTYYSVGKFFEDARHATKDVLKKG-RVPIVTGGTGL 41 (352)
Q Consensus 6 p~e~ysv~~F~~~A~~~i~~I~~rg-kvPIvVGGTgl 41 (352)
|...++...|.+.+.++++.|++.+ +.||+|||.+.
T Consensus 148 P~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w 184 (345)
T 3jug_A 148 WYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGW 184 (345)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4444567788888888888888775 47999999763
No 30
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.91 E-value=18 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCeEEEcCChh
Q 018647 19 ARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 19 A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
..+.|..+++.|.+||+.||.|.
T Consensus 175 ~~~~i~~lL~~g~IpI~~g~~g~ 197 (316)
T 2e9y_A 175 DRDLIAEASAESPAVVALGGGGV 197 (316)
T ss_dssp THHHHHHHHHHCSEEEECGGGCE
T ss_pred hHHHHHHHHHCCCEEEEECCCCC
Confidence 46778889999999999988753
No 31
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=27.66 E-value=83 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=28.3
Q ss_pred CccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEc
Q 018647 2 SAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTG 37 (352)
Q Consensus 2 ~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVG 37 (352)
|.=|....++..+|.+...++|+.+.++|..+|++|
T Consensus 71 G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 106 (190)
T 1ivn_A 71 GGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQ 106 (190)
T ss_dssp CTTTTSSSCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 444555567899999999999999999876666665
No 32
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=26.22 E-value=68 Score=29.43 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=7.2
Q ss_pred EEcCChhH
Q 018647 35 VTGGTGLY 42 (352)
Q Consensus 35 vVGGTglY 42 (352)
|+||||+|
T Consensus 34 iI~GSGl~ 41 (266)
T 1qe5_A 34 LVLGSGWG 41 (266)
T ss_dssp EECCTTCT
T ss_pred EEeCCchh
Confidence 77999997
No 33
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=26.19 E-value=32 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhc-CCCe-E-EEcCChhH
Q 018647 15 FFEDARHATKDVLKK-GRVP-I-VTGGTGLY 42 (352)
Q Consensus 15 F~~~A~~~i~~I~~r-gkvP-I-vVGGTglY 42 (352)
..+++.++.+-|.++ +..| | |+||||+|
T Consensus 13 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~ 43 (277)
T 1vmk_A 13 MMKKIEEARTFISERTNLSPDILIILGSGFG 43 (277)
T ss_dssp CHHHHHHHHHHHHTTCCCCCSEEEEEC---C
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEccCchh
Confidence 456667777777665 2234 3 77999998
No 34
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=25.74 E-value=62 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEcCChh
Q 018647 10 YSVGKFFEDARHATKDVLKKGRVPIVTGGTGL 41 (352)
Q Consensus 10 ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTgl 41 (352)
.++.+..+...+.+.+++++ +.||+.||-+.
T Consensus 98 ~~~~~~~~~i~~~v~~~l~~-~~pi~LGGdHs 128 (336)
T 1xfk_A 98 DELEQAQQECAQVIQQALPH-ARAIVLGGGHE 128 (336)
T ss_dssp TCHHHHHHHHHHHHHHHTTT-CCEEEECSSTT
T ss_pred cCHHHHHHHHHHHHHHHHHh-CCeEEEeCchh
Confidence 46888888889999999999 99999999865
No 35
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=24.85 E-value=37 Score=31.71 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=7.6
Q ss_pred EEcCChhH
Q 018647 35 VTGGTGLY 42 (352)
Q Consensus 35 vVGGTglY 42 (352)
|+||||||
T Consensus 38 iI~GSGl~ 45 (287)
T 3odg_A 38 FILGSGLG 45 (287)
T ss_dssp EEECTTTG
T ss_pred EEecCChh
Confidence 88999998
No 36
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=24.56 E-value=86 Score=28.22 Aligned_cols=36 Identities=6% Similarity=0.106 Sum_probs=25.6
Q ss_pred CCCccCHHHHHHHHHHHHHHHHhcC-CCeEEEcCChh
Q 018647 6 LNTYYSVGKFFEDARHATKDVLKKG-RVPIVTGGTGL 41 (352)
Q Consensus 6 p~e~ysv~~F~~~A~~~i~~I~~rg-kvPIvVGGTgl 41 (352)
|...++...|.+.+.++++.|.+.+ +.||+|||.+.
T Consensus 125 P~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~ 161 (294)
T 2whl_A 125 WYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGW 161 (294)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTT
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Confidence 4444666667777777888887764 58999998753
No 37
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.45 E-value=23 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhcC--CCeEEEcCCh
Q 018647 14 KFFEDARHATKDVLKKG--RVPIVTGGTG 40 (352)
Q Consensus 14 ~F~~~A~~~i~~I~~rg--kvPIvVGGTg 40 (352)
.....+.+.++.+.++| .+||+|||..
T Consensus 66 ~~~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 66 QGEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp THHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred CcHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 44455667777777766 4999999965
No 38
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=24.18 E-value=41 Score=30.24 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCeEEEcCCh
Q 018647 22 ATKDVLKKGRVPIVTGGTG 40 (352)
Q Consensus 22 ~i~~I~~rgkvPIvVGGTg 40 (352)
.+..+++.|.+|||.||+|
T Consensus 121 ~~~~lL~~g~IpVv~~~~g 139 (243)
T 3ek6_A 121 RAIRHLEKGRIAIFAAGTG 139 (243)
T ss_dssp HHHHHHHTTCEEEEESTTS
T ss_pred HHHHHHHCCcEEEEECCCC
Confidence 3467788999999999876
No 39
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=22.80 E-value=45 Score=30.00 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCeEEEcCCh
Q 018647 21 HATKDVLKKGRVPIVTGGTG 40 (352)
Q Consensus 21 ~~i~~I~~rgkvPIvVGGTg 40 (352)
.++ .+++.|.+||+.||+|
T Consensus 125 ~~~-~lL~~g~IpVi~gg~g 143 (255)
T 2jjx_A 125 RAV-HHLDNGYIVIFGGGNG 143 (255)
T ss_dssp HHH-HHHHTTCEEEEESTTS
T ss_pred HHH-HHHhCCcEEEEeCCCC
Confidence 344 6778899999998644
No 40
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=22.48 E-value=46 Score=29.78 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=15.5
Q ss_pred HHHHHHhcCCCeEEEcCCh
Q 018647 22 ATKDVLKKGRVPIVTGGTG 40 (352)
Q Consensus 22 ~i~~I~~rgkvPIvVGGTg 40 (352)
.+..+++.|.+|||.||+|
T Consensus 120 ~i~~lL~~g~ipVi~~~~g 138 (240)
T 4a7w_A 120 KAIRHLEKGRVVIFGAGTG 138 (240)
T ss_dssp HHHHHHHTTCEEEEESTTS
T ss_pred HHHHHHHCCCEEEEeCCCC
Confidence 3467788999999999876
No 41
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=22.44 E-value=1.1e+02 Score=27.86 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHhcC--CCeEEEcCChh
Q 018647 11 SVGKFFEDARHATKDVLKKG--RVPIVTGGTGL 41 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rg--kvPIvVGGTgl 41 (352)
+...+...+.++++.|++.| +.+|+|||.++
T Consensus 138 ~~~~w~~~~~~~~~~IR~~~~~~~~I~v~g~~~ 170 (305)
T 1h1n_A 138 DQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSW 170 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECTGG
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEccccc
Confidence 67788888889999998665 58999999874
No 42
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.40 E-value=50 Score=29.84 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcC-CCeEEEcCChh
Q 018647 18 DARHATKDVLKKG-RVPIVTGGTGL 41 (352)
Q Consensus 18 ~A~~~i~~I~~rg-kvPIvVGGTgl 41 (352)
.+.+.++.+.++| ++||+|||.++
T Consensus 190 ~~~~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 190 AFKEVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp HHHHHHHHHHTTTCCCCEEEESTTC
T ss_pred HHHHHHHHHHhcCCCCcEEEECccC
Confidence 4566677776654 49999999765
No 43
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=21.49 E-value=1.1e+02 Score=28.83 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--CeEEEcCChh
Q 018647 11 SVGKFFEDARHATKDVLKKGR--VPIVTGGTGL 41 (352)
Q Consensus 11 sv~~F~~~A~~~i~~I~~rgk--vPIvVGGTgl 41 (352)
+...+...+.++++.|++.|. .+|||||.++
T Consensus 154 ~~~~w~~~~~~~i~aIR~~~~~~~~Iiv~g~~w 186 (340)
T 3qr3_A 154 NINTWAATVQEVVTAIRNAGATSQFISLPGNDW 186 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECSGG
T ss_pred CHHHHHHHHHHHHHHHHhhCCCccEEEEeCCcc
Confidence 577888888889999988865 4999999865
No 44
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.37 E-value=54 Score=26.25 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=18.0
Q ss_pred eEEEEEeCCHHHHHHHHHHH
Q 018647 160 FMCFFLSSHRLDLYRSIDLR 179 (352)
Q Consensus 160 ~~~~~L~~~R~~L~~rI~~R 179 (352)
..+|||+++.+.+.+|+..|
T Consensus 96 ~~~i~l~~~~e~~~~R~~~r 115 (173)
T 3kb2_A 96 AKVVYLHADPSVIKKRLRVR 115 (173)
T ss_dssp EEEEEEECCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhc
Confidence 45889999999999999988
No 45
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.15 E-value=81 Score=25.79 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=20.6
Q ss_pred CceEEEEEeCCHHHHHHHHHHHHH
Q 018647 158 YDFMCFFLSSHRLDLYRSIDLRCE 181 (352)
Q Consensus 158 yd~~~~~L~~~R~~L~~rI~~Rvd 181 (352)
+..++|+|+++.+.+.+|+..|-.
T Consensus 104 ~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 104 FTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp CEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCHHHHHHHHHHhcC
Confidence 346789999999999999999864
No 46
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=20.97 E-value=35 Score=30.08 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCeEEEcC
Q 018647 21 HATKDVLKKGRVPIVTGG 38 (352)
Q Consensus 21 ~~i~~I~~rgkvPIvVGG 38 (352)
+.|+++...-.+|||+||
T Consensus 140 ~iI~~i~~~~~~PiIaGG 157 (192)
T 3kts_A 140 EQVQKMTQKLHIPVIAGG 157 (192)
T ss_dssp HHHHHHHHHHCCCEEEES
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 466777777789999998
Done!