BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018648
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 57/324 (17%)
Query: 12 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 55
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 77 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 136
Query: 56 GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLG-NSIDVYPVGRTRVTLKRDG- 113
++EQVSHHPP++A N+ K + K G N I +T+K+ G
Sbjct: 137 ETVLLSEQVSHHPPVTAFSIFND--------KNKVKLQGYNQIKASFTKSLMLTVKQFGH 188
Query: 114 VVLDL-------VPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGR 166
+LD+ PPP + ++ +++ G + + +TG V+ F G+F +
Sbjct: 189 TMLDIKDESYLVTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKK 247
Query: 167 YEVDGYVY----DAAEQPKIL--MTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPE 220
+Y D+ ++ K L ++G+W+ S + + E + + A P
Sbjct: 248 NSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPA 301
Query: 221 DDKYQYTYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEK 280
+ LN + L S A++ GD + K+ LEE QR +
Sbjct: 302 EH----------LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELR 351
Query: 281 RIREAKDDMFTPKWF-DLSDEVTP 303
+ EAK + +WF D VTP
Sbjct: 352 KEEEAKGISWQRRWFKDFDYSVTP 375
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 45/318 (14%)
Query: 12 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 55
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 75 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 134
Query: 56 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 112
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 135 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 194
Query: 113 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGY 172
+ + PPP + ++ +++ G + + +TG V+ F G+F +
Sbjct: 195 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKNSFKAR 251
Query: 173 VY----DAAEQPKIL--MTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQY 226
+Y D+ ++ K L ++G+W+ S + + E + + A P +
Sbjct: 252 IYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH---- 301
Query: 227 TYFTHKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAK 286
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 302 ------LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAK 355
Query: 287 DDMFTPKWF-DLSDEVTP 303
+ +WF D VTP
Sbjct: 356 GISWQRRWFKDFDYSVTP 373
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 130/315 (41%), Gaps = 42/315 (13%)
Query: 12 ECEDPYM-RLVYASSWALSI----YFAYRRAW----KPFNPVLGETF-------EMVNHG 55
E E P + R++ + W +S Y + + KP NP LGE F E G
Sbjct: 48 EVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFG 107
Query: 56 GVTFIAEQVSHHPPMSAGHAENEHFIYDVT--SKLRTKFLGN-SIDVYPVGRTRVTLKRD 112
++EQVSHHPP++A N+ + ++++ F + + V G T + +K +
Sbjct: 108 ETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIKDE 167
Query: 113 GVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPC-GWFGAGRYEVDG 171
+ + PPP + ++ +++ G + + +TG V+ F G + + +
Sbjct: 168 SYL--VTPPPLHIEGILVASPFVELEGKSYIQS-STGLLCVIEFSGVDGKKNSFKARIYK 224
Query: 172 YVYDAAEQPKIL--MTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYF 229
D+ ++ K L ++G+W+ S + + E + + A P +
Sbjct: 225 DSKDSKDKEKALYTISGQWSGSSKIIKANKKEES------RLFYDAARIPAEH------- 271
Query: 230 THKLNSFDTAPKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDM 289
LN + L S A++ GD + K+ LEE QR ++ EAK
Sbjct: 272 ---LNVKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 328
Query: 290 FTPKWF-DLSDEVTP 303
+ +WF D VTP
Sbjct: 329 WQRRWFKDFDYSVTP 343
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 162 FGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDS-EGEPLPGTELKEVWRVADAPE 220
FG + GY+ AA K L T + E + D + +P TE+K V V E
Sbjct: 40 FGKVLFPSTGYLEIAASAGKSLFTSQ--EQVVVSDVDILQSLVIPETEIKTVQTVVSFAE 97
Query: 221 DDKYQYTYFTHKLNSFDTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSR---LEER 275
++ Y++ F+ P+ +L + ++ P R + K DL K +E S+ +EE
Sbjct: 98 NNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDLEKYQAECSQAIEIEEH 157
Query: 276 QR 277
R
Sbjct: 158 YR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,939,293
Number of Sequences: 62578
Number of extensions: 535558
Number of successful extensions: 1192
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 10
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)