Query 018648
Match_columns 352
No_of_seqs 184 out of 1062
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2209 Oxysterol-binding prot 100.0 2.5E-94 5.4E-99 667.5 15.2 323 1-333 79-444 (445)
2 PF01237 Oxysterol_BP: Oxyster 100.0 1.9E-92 4.1E-97 693.1 25.1 314 1-321 37-354 (354)
3 KOG1737 Oxysterol-binding prot 100.0 1.2E-90 2.5E-95 717.7 25.7 326 1-333 469-798 (799)
4 KOG2210 Oxysterol-binding prot 100.0 4.8E-60 1E-64 458.9 20.9 281 1-301 73-367 (392)
5 PF14254 DUF4348: Domain of un 51.7 21 0.00045 33.9 4.2 40 120-159 225-265 (273)
6 KOG0772 Uncharacterized conser 42.7 4.1E+02 0.0089 27.9 11.9 30 232-261 399-428 (641)
7 PF10504 DUF2452: Protein of u 37.2 30 0.00065 30.3 2.6 26 36-61 83-109 (159)
8 PF12915 DUF3833: Protein of u 36.3 1.2E+02 0.0025 26.9 6.2 59 156-220 23-88 (164)
9 PF13089 PP_kinase_N: Polyphos 35.1 36 0.00077 27.8 2.7 23 6-28 16-39 (109)
10 PF06886 TPX2: Targeting prote 32.8 74 0.0016 22.9 3.7 31 250-280 1-31 (57)
11 PF14038 YqzE: YqzE-like prote 26.5 31 0.00068 24.7 0.8 17 280-296 28-44 (54)
12 KOG1693 emp24/gp25L/p24 family 24.1 5.6E+02 0.012 23.5 12.0 45 147-194 42-86 (209)
13 PF07576 BRAP2: BRCA1-associat 24.1 83 0.0018 25.8 3.0 20 38-57 76-95 (110)
14 PF09783 Vac_ImportDeg: Vacuol 23.9 2.9E+02 0.0062 24.7 6.6 41 138-192 37-77 (176)
15 PF14714 KH_dom-like: KH-domai 23.6 73 0.0016 24.4 2.5 22 58-79 29-50 (80)
16 COG2154 Pterin-4a-carbinolamin 22.2 31 0.00067 28.0 0.1 18 57-74 49-66 (101)
17 PF02151 UVR: UvrB/uvrC motif; 20.4 1.7E+02 0.0036 18.8 3.3 24 254-277 12-35 (36)
No 1
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-94 Score=667.55 Aligned_cols=323 Identities=36% Similarity=0.657 Sum_probs=293.3
Q ss_pred CCccHHHhhhcCCCCHHHHHHHHHHHHhhhhcc-cccCCCCCCcCCCceEEEEecC-CeEEEeeccccCCCeeEEEEE--
Q 018648 1 MEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE-- 76 (352)
Q Consensus 1 leY~~lL~~Aa~~~dp~eRm~~V~af~iS~~~~-~~r~~KPfNPiLGETfe~~~~~-g~~~iaEQVSHHPPIsA~~~e-- 76 (352)
|||..||.+||+++||+|||.+|+|||+|+.++ -.|+.||||||||||||+.+.+ |+|||||||||||||||||+|
T Consensus 79 me~~yLi~kAs~~~~p~eRmqyVAAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl 158 (445)
T KOG2209|consen 79 MEHTYLIHKASSQSDPVERMQYVAAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGL 158 (445)
T ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhccc
Confidence 799999999999999999999999999999975 5699999999999999999854 999999999999999999999
Q ss_pred cCCeEEEEEeeeEEEEEeeEEEEEEeeEEEEEEecCCeEEEEecCCceeeeeecCceeEecCCcEEEEeCCCCCEEEEEE
Q 018648 77 NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYF 156 (352)
Q Consensus 77 ~~~~~~~~~~~~~~kF~G~sv~~~~~G~~~i~~~~~ge~y~~~~p~~~v~nii~G~~~~e~~G~~~i~~~~tg~~a~i~F 156 (352)
|..|.|.|++.|+.||||+||++.|.|.++|+|.++||.|+|+.|+++|||||+|++|||++|.|.|.|+.||++|+++|
T Consensus 159 ~~dF~fhGsi~PklkFWgksvea~Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~F 238 (445)
T KOG2209|consen 159 NNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNF 238 (445)
T ss_pred CcceEEeeeecccceeccceeecCCCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEec
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCccccCceeEEEEEEECCCCCceEEEeeEeeceeeeeeCC------------------------C---CCCc------
Q 018648 157 QPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCD------------------------S---EGEP------ 203 (352)
Q Consensus 157 ~~~~~~g~~~~~v~G~I~~~~g~~~~~i~G~W~~~i~~~~~~------------------------~---~g~~------ 203 (352)
+++|+||+..|+|+|.|.|++.++++.|.|+|++-|...+.. + +.-+
T Consensus 239 k~~G~~gk~lHkVEG~i~d~~k~kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~ 318 (445)
T KOG2209|consen 239 KPCGLFGKELHKVEGHIQDKSKKKLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSES 318 (445)
T ss_pred ccccccccchhheeehhhccccccchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcce
Confidence 999999999999999999999899999999999877643210 0 0012
Q ss_pred ---CCCCceeEeEeeccCCCC--CccccceeeeecCCCCC-CCCcCCCCCcccchhHHHHHcCChhHHHHHHHHHHHHHH
Q 018648 204 ---LPGTELKEVWRVADAPED--DKYQYTYFTHKLNSFDT-APKKLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQR 277 (352)
Q Consensus 204 ---~~~~~~~~lW~~~~~p~~--~~~~ft~fa~~Lne~~~-~~~~~~ptDSR~RpD~rale~Gd~d~A~~eK~~LEe~QR 277 (352)
+|++ +.||.+++.|++ ++|+||.||+.||+++. ....++|||||+|||+|+||+|++|+|.++|+||||+||
T Consensus 319 v~~iPgS--k~LW~~n~rP~n~~~~y~FT~FalsLNem~~~M~~tl~pTD~RlRpDi~~mE~G~~D~AseeK~rlEEkQR 396 (445)
T KOG2209|consen 319 VFIIPGS--KLLWRINPRPPNSAQMYNFTSFALSLNEMDKGMESTLPPTDCRLRPDIRAMENGNIDQASEEKKRLEEKQR 396 (445)
T ss_pred eEecCCC--eEEEEecCCCCCHHHhhchhhheeehhhhccCcccccCCcccccCchhhhhhcCCcchhHHHHHHHHHHHH
Confidence 2333 459999999998 59999999999999998 444678999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceecceeecCCCCCCCCCCcceEEEcCcchhhcccCCCCCCcCC
Q 018648 278 AEKRIREAKDDMFTPKWFDLSDEVTPTPWGDLEVYRYNGKYSELRATLDNSESLGE 333 (352)
Q Consensus 278 ~~rk~r~~~~~~~~Pr~F~~~~~~~~~~~~~~~~~~y~g~Yw~~r~~~~~~~~~~~ 333 (352)
++||.|.+....|+||||.+..++.+ +...|.|.|+||++ ++++|.++
T Consensus 397 e~Rk~rs~~~~dw~~rWF~~~~np~t----~~~dWlYsGgYwdR----~ysn~~~i 444 (445)
T KOG2209|consen 397 EARKNRSKSEEDWKTRWFHQGPNPYT----GAQDWLYSGGYWDR----NYSNCPDI 444 (445)
T ss_pred HHHhhcccccccCcchhcccCCCCCC----CcccceeecCcccc----ccccCccc
Confidence 99999988888999999999988743 34579999999964 68888665
No 2
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=1.9e-92 Score=693.08 Aligned_cols=314 Identities=40% Similarity=0.725 Sum_probs=241.5
Q ss_pred CCccHHHhhhcCCCCHHHHHHHHHHHHhhhhcc-cccCCCCCCcCCCceEEEEecCCeEEEeeccccCCCeeEEEEEcCC
Q 018648 1 MEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVNHGGVTFIAEQVSHHPPMSAGHAENEH 79 (352)
Q Consensus 1 leY~~lL~~Aa~~~dp~eRm~~V~af~iS~~~~-~~r~~KPfNPiLGETfe~~~~~g~~~iaEQVSHHPPIsA~~~e~~~ 79 (352)
|+|++||++||.++||+|||++|++|+||+|+. ..|++||||||||||||+.+++|++|+||||||||||||||++|++
T Consensus 37 ~~y~~lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~~KPfNPiLGETfe~~~~~~~~~~aEQVSHHPPisa~~~~~~~ 116 (354)
T PF01237_consen 37 FEYPDLLDKAAEEDDPLERMLYVAAFALSSYSSTPGRTKKPFNPILGETFELVRPDGTRFIAEQVSHHPPISAFHAEGRG 116 (354)
T ss_dssp SSSHHHHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE---TT-EE--TT-T-EEEEEEEEETTTTEEEEEEEETT
T ss_pred hhChHHHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCCCcCcCCCCcceeeeccCceEEEEEecccCCCCceEEEEEcCC
Confidence 799999999999999999999999999999986 5688999999999999998668999999999999999999999999
Q ss_pred eEEEEEeeeEEEEEeeEEEEEEeeEEEEEEecCCeEEEEecCCceeeeeecCceeEecCCcEEEEeCCCCCEEEEEEeeC
Q 018648 80 FIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPC 159 (352)
Q Consensus 80 ~~~~~~~~~~~kF~G~sv~~~~~G~~~i~~~~~ge~y~~~~p~~~v~nii~G~~~~e~~G~~~i~~~~tg~~a~i~F~~~ 159 (352)
|.++|+..++++|+|+||++.+.|.++|+|.+.||+|+|++|+++|+||++|++|+|+.|+|+|+|++||++|+|+|+++
T Consensus 117 ~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~ 196 (354)
T PF01237_consen 117 WKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPK 196 (354)
T ss_dssp EEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETS
T ss_pred EEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccccCceeEEEEEEECCCCCceEEEeeEeeceeeeeeCCCCCCcCCCCceeEeEeeccCCCC--CccccceeeeecCCCC
Q 018648 160 GWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPED--DKYQYTYFTHKLNSFD 237 (352)
Q Consensus 160 ~~~g~~~~~v~G~I~~~~g~~~~~i~G~W~~~i~~~~~~~~g~~~~~~~~~~lW~~~~~p~~--~~~~ft~fa~~Lne~~ 237 (352)
||||+..+.|+|.|++.+|+++++|+|+||+.|.+......+ ...+...+|++++.|.+ .+|+||.||++||+++
T Consensus 197 ~~f~~~~~~v~G~I~~~~~~~~~~i~G~W~~~i~~~~~~~~~---~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~ 273 (354)
T PF01237_consen 197 GWFSGKSNEVEGKIYDSKGKPIYKISGKWDEEIYIKDVKNDS---DTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELT 273 (354)
T ss_dssp SSTSSSTTEEEEEEESSGGG-SEEEEEETTSEEEEEETT-------GGGEEEEEETTTS-SS--B----------G----
T ss_pred CcccccceeeEEEEEEccCceeEEeeeeeCCeEEEEeccccc---cCCCceEEEECCCCcccccceeccccccccccccc
Confidence 999999999999999988999999999999999998765321 12345679999998875 5899999999999998
Q ss_pred CCCC-cCCCCCcccchhHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhcCCCceecceeecCCCCCCCCCCcceEEEcC
Q 018648 238 TAPK-KLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDMFTPKWFDLSDEVTPTPWGDLEVYRYNG 316 (352)
Q Consensus 238 ~~~~-~~~ptDSR~RpD~rale~Gd~d~A~~eK~~LEe~QR~~rk~r~~~~~~~~Pr~F~~~~~~~~~~~~~~~~~~y~g 316 (352)
+..+ .++|||||+|||++||++||+++|+++|.+|||+||++||+|+++|++|+||||+++.|+. .+.+.|+|+|
T Consensus 274 ~~~~~~~~ptDSr~R~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~R~~~~~~w~Pr~F~~~~d~~----~~~~~w~~~g 349 (354)
T PF01237_consen 274 PELEEKLPPTDSRWRPDQRALENGDIDKAQEEKKRLEEKQRADRKERKEKGEEWKPRWFEKVEDPS----TEEEEWVYKG 349 (354)
T ss_dssp ---G-GS-TTBHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHCT--GGGSSEEEEE-SS----S--T------
T ss_pred ccccccCCchhccchHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCeEEECCCCC----Cccccccccc
Confidence 7543 7899999999999999999999999999999999999999999999999999999997764 3446799999
Q ss_pred cchhh
Q 018648 317 KYSEL 321 (352)
Q Consensus 317 ~Yw~~ 321 (352)
+||++
T Consensus 350 ~YW~~ 354 (354)
T PF01237_consen 350 GYWER 354 (354)
T ss_dssp -----
T ss_pred cccCC
Confidence 99984
No 3
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-90 Score=717.65 Aligned_cols=326 Identities=44% Similarity=0.732 Sum_probs=309.9
Q ss_pred CCccHHHhhhcCCCCHHHHHHHHHHHHhhhhc-ccccCCCCCCcCCCceEEEEe-cCCeEEEeeccccCCCeeEEEEEcC
Q 018648 1 MEYSHLLDLADECEDPYMRLVYASSWALSIYF-AYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENE 78 (352)
Q Consensus 1 leY~~lL~~Aa~~~dp~eRm~~V~af~iS~~~-~~~r~~KPfNPiLGETfe~~~-~~g~~~iaEQVSHHPPIsA~~~e~~ 78 (352)
|||++||++|++..||++||++|+||++|+|+ +..|..||||||||||||+.+ ++|+|||+|||||||||+|+||++.
T Consensus 469 lEYs~LLd~A~~~~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~sEqVSHhPPi~A~h~es~ 548 (799)
T KOG1737|consen 469 LEYSELLDKAANYEDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFFSEQVSHHPPISACHAESN 548 (799)
T ss_pred ccchhhhHHHHhcCCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeeeeeeeccCCCcccccccCC
Confidence 79999999999999999999999999999996 467999999999999999998 5599999999999999999999999
Q ss_pred CeEEEEEeeeEEEEEeeEEEEEEeeEEEEEEecCCeEEEEecCCceeeeeecCceeEecCCcEEEEeCCCC-CEEEEEEe
Q 018648 79 HFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTG-DKVVLYFQ 157 (352)
Q Consensus 79 ~~~~~~~~~~~~kF~G~sv~~~~~G~~~i~~~~~ge~y~~~~p~~~v~nii~G~~~~e~~G~~~i~~~~tg-~~a~i~F~ 157 (352)
+|.|+|+..+++||||+||+|.|.|.++|+|+.+|++|+|.+|++.|+|||+|++|+|++|.|.|+|++++ ++|.|.|+
T Consensus 549 ~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge~~i~n~~~~~~~c~L~F~ 628 (799)
T KOG1737|consen 549 NWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGEMEITNHTTGSDKCKLKFV 628 (799)
T ss_pred CceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeeccccccccccEEEecCCCCcceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred eCccccCceeEEEEEEECCCCCceEEEeeEeeceeeeeeCCCCCCcCCCCceeEeEeeccCCCCCccccceeeeecCCCC
Q 018648 158 PCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYFTHKLNSFD 237 (352)
Q Consensus 158 ~~~~~g~~~~~v~G~I~~~~g~~~~~i~G~W~~~i~~~~~~~~g~~~~~~~~~~lW~~~~~p~~~~~~ft~fa~~Lne~~ 237 (352)
+.|||+++.++|.|.|++.+|++++++.|+|++.|++..++..|.+.+.+....+|+++++|+|.+|+||.||++||+++
T Consensus 629 ~~~~~~~~~~ev~g~V~~~s~~~~~~l~GkW~e~~~~~~~~~~~~~~~~~~~~~iWk~~~~Pkn~~y~ft~fai~LNel~ 708 (799)
T KOG1737|consen 629 KAGYFSRNAREVEGSVRNKSGKKVEVLTGKWDESLYYFKVDKVGLPEPETSEKLIWKANDLPKNNKYNFTGFAIELNELT 708 (799)
T ss_pred eecccCCCcceeEEEEeCCCCceeEEEeeeehhhhhhccccccccccCCccceeeeecCCCCCCcccccchhheecccCC
Confidence 99999999999999999999999999999999999998888777666677778899999999999999999999999999
Q ss_pred CCCC-cCCCCCcccchhHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhcCCCceecceeecCCCCCCCCCCcceEEEcC
Q 018648 238 TAPK-KLLPSDSRLRPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDMFTPKWFDLSDEVTPTPWGDLEVYRYNG 316 (352)
Q Consensus 238 ~~~~-~~~ptDSR~RpD~rale~Gd~d~A~~eK~~LEe~QR~~rk~r~~~~~~~~Pr~F~~~~~~~~~~~~~~~~~~y~g 316 (352)
+.++ .++|||||+|||||+||+|++++|..||.||||+||++|+.|++.+.+|+||||.+..++.+ +|+|+|
T Consensus 709 p~l~~~lpPTDSRlRPDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~prwF~~~~~~~~-------~~~~ng 781 (799)
T KOG1737|consen 709 PHLKKLLPPTDSRLRPDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPRWFEKVKDPST-------YWVYNG 781 (799)
T ss_pred chhhccCCCCCcccCcchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhccccccccccccCCCcc-------eEEecC
Confidence 9665 45689999999999999999999999999999999999999999999999999999987542 899999
Q ss_pred cchhhcccCCCCCCcCC
Q 018648 317 KYSELRATLDNSESLGE 333 (352)
Q Consensus 317 ~Yw~~r~~~~~~~~~~~ 333 (352)
+||++|++++|..|-++
T Consensus 782 ~Ywe~r~~~d~~~~~~i 798 (799)
T KOG1737|consen 782 GYWEAREKQDWKDCPDI 798 (799)
T ss_pred chheeecccCccccccC
Confidence 99999999999998664
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-60 Score=458.89 Aligned_cols=281 Identities=27% Similarity=0.350 Sum_probs=239.7
Q ss_pred CCccHHHhhhcCCCCHHHHHHHHHHHHhhhhcccc-cCCCCCCcCCCceEEEEec-------CCeEEEeeccccCCCeeE
Q 018648 1 MEYSHLLDLADECEDPYMRLVYASSWALSIYFAYR-RAWKPFNPVLGETFEMVNH-------GGVTFIAEQVSHHPPMSA 72 (352)
Q Consensus 1 leY~~lL~~Aa~~~dp~eRm~~V~af~iS~~~~~~-r~~KPfNPiLGETfe~~~~-------~g~~~iaEQVSHHPPIsA 72 (352)
|.+.|||..|+..+||++||+.|++|++|+++... ...||+||||||||.|.|. ..+.|+||||||||||||
T Consensus 73 ~~~~dll~~~~~~~~p~~R~~~VvkwylS~~~~~~~~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSA 152 (392)
T KOG2210|consen 73 SYHPDLLLEASSEADPLERMLAVVKWYLSGFHAGPKGRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSA 152 (392)
T ss_pred hhccchhcccccCCCHHHHhhhheeeeehhcccccccccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcce
Confidence 34678999999999999999999999999999754 4566999999999999872 458999999999999999
Q ss_pred EEEEcC--CeEEEEEeeeEEEEEeeEEEEEEeeEEEEEEecCCeEEEEecCCceeeeeecCceeEecCCcEEEEeCCCCC
Q 018648 73 GHAENE--HFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGD 150 (352)
Q Consensus 73 ~~~e~~--~~~~~~~~~~~~kF~G~sv~~~~~G~~~i~~~~~ge~y~~~~p~~~v~nii~G~~~~e~~G~~~i~~~~tg~ 150 (352)
||++++ +..+.|++.++++|.|+|+.|.+.|...|+|.+.+|+|.+++|.++++||++|.+|+|+.|++.|.|++|++
T Consensus 153 f~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~ 232 (392)
T KOG2210|consen 153 FYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGVLKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGL 232 (392)
T ss_pred eeEEccccCeEEEEEEeecccccccceeEEEcCCcEEEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcce
Confidence 999876 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCccccCceeEEEEEEECCC-CCceEEEeeEeeceeeeeeCCCCCCcCCCCceeEeEeeccCCCCCcccccee
Q 018648 151 KVVLYFQPCGWFGAGRYEVDGYVYDAA-EQPKILMTGKWNESMSYQPCDSEGEPLPGTELKEVWRVADAPEDDKYQYTYF 229 (352)
Q Consensus 151 ~a~i~F~~~~~~g~~~~~v~G~I~~~~-g~~~~~i~G~W~~~i~~~~~~~~g~~~~~~~~~~lW~~~~~p~~~~~~ft~f 229 (352)
.+.++|..++|+|+..+.+.+.|+... .+..+.|+|+||+.|.++..+.+. .|...+......
T Consensus 233 ~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~G~W~~~~~~k~~~~~~----------~~~~~d~~~~~~------ 296 (392)
T KOG2210|consen 233 SAILESILKPFLGGKNSFNARSIKGPIDKKDFCSISGEWDGVMYAKYAKSGE----------SRNFVDCKKLPV------ 296 (392)
T ss_pred eeeEeeccCcccccccccceEEEEcccccccccccceeecccEEEEEcCCCc----------eeecccccccCc------
Confidence 999999999999999888899998654 345678999999999998755321 222221110000
Q ss_pred eeecCCCCCC-CCcCCCCCccc--chhHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhcCCCceecceeecCCC
Q 018648 230 THKLNSFDTA-PKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSRLEERQRAEKRIREAKDDMFTPKWFDLSDEV 301 (352)
Q Consensus 230 a~~Lne~~~~-~~~~~ptDSR~--RpD~rale~Gd~d~A~~eK~~LEe~QR~~rk~r~~~~~~~~Pr~F~~~~~~ 301 (352)
-..... .+++-|.+||+ +.+++||..||++.|+++|..|||+||++||+|++.|++|+||||...++.
T Consensus 297 ----~~~~v~pLeEQ~e~ESrrlWk~Vt~ai~~~d~~~Ate~K~~iEe~QR~~ak~ree~g~~W~pk~F~~~~~~ 367 (392)
T KOG2210|consen 297 ----TKPKVRPLEEQGEYESRRLWKEVTEAILAGDIEQATEEKFELEEKQRELAKKREESGEEWKPKLFKVDEDG 367 (392)
T ss_pred ----CCCCcCChHHcCcHHHHHHHHHHHHHHHhccHHHHhHHHhHHHHHHHHHHHHHHHhCCcceecceeEcCCC
Confidence 000001 12455888997 568999999999999999999999999999999999999999999998753
No 5
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=51.73 E-value=21 Score=33.93 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=25.5
Q ss_pred cCCceeeeeecCceeEecCCc-EEEEeCCCCCEEEEEEeeC
Q 018648 120 PPPTKVHNLIFGRTWIDSPGD-MVMTNLTTGDKVVLYFQPC 159 (352)
Q Consensus 120 ~p~~~v~nii~G~~~~e~~G~-~~i~~~~tg~~a~i~F~~~ 159 (352)
+|.-.|.||+.|.+|.+-..+ +.|+--.+|+..+|.|+..
T Consensus 225 lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~ 265 (273)
T PF14254_consen 225 LPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKR 265 (273)
T ss_dssp --SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEE
T ss_pred CCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEc
Confidence 588899999999999995444 4566788999999999865
No 6
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=42.71 E-value=4.1e+02 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=21.9
Q ss_pred ecCCCCCCCCcCCCCCcccchhHHHHHcCC
Q 018648 232 KLNSFDTAPKKLLPSDSRLRPDRYALEKGD 261 (352)
Q Consensus 232 ~Lne~~~~~~~~~ptDSR~RpD~rale~Gd 261 (352)
.||..+.++...+-||+-|-||.+.|-.|-
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecc
Confidence 355555555555689999999999887774
No 7
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=37.15 E-value=30 Score=30.33 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=20.5
Q ss_pred cCCCCCCcCCCceEEEEe-cCCeEEEe
Q 018648 36 RAWKPFNPVLGETFEMVN-HGGVTFIA 61 (352)
Q Consensus 36 r~~KPfNPiLGETfe~~~-~~g~~~ia 61 (352)
..+==|.|+.|+||.+.. .+|..|++
T Consensus 83 ~A~cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 83 HAKCNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred hcccCceecCCCEEEEEECCCCCEEEE
Confidence 355678999999999876 67877765
No 8
>PF12915 DUF3833: Protein of unknown function (DUF3833); InterPro: IPR024409 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=36.33 E-value=1.2e+02 Score=26.87 Aligned_cols=59 Identities=17% Similarity=0.379 Sum_probs=36.8
Q ss_pred EeeCccccCceeEEEEEEECCCCCce----EEEeeEeeceeeeeeCC---CCCCcCCCCceeEeEeeccCCC
Q 018648 156 FQPCGWFGAGRYEVDGYVYDAAEQPK----ILMTGKWNESMSYQPCD---SEGEPLPGTELKEVWRVADAPE 220 (352)
Q Consensus 156 F~~~~~~g~~~~~v~G~I~~~~g~~~----~~i~G~W~~~i~~~~~~---~~g~~~~~~~~~~lW~~~~~p~ 220 (352)
|....+|.+. -...|.|.|..|+.. ..|.|+|++..-.-..+ .+| ....++|.+.+..+
T Consensus 23 ~~l~~fF~G~-~~A~G~~~dr~G~v~rrF~v~i~g~w~g~~~tL~E~F~y~DG-----e~q~R~W~l~~~~~ 88 (164)
T PF12915_consen 23 FDLEEFFNGK-LVAWGMFQDRSGKVTRRFTVDIDGSWDGNTGTLDEDFVYDDG-----ETQTRVWTLTKTGD 88 (164)
T ss_pred cCHHHHCCCc-EEEEEEEECCCCCEEEEEEEEEEEEEECCEEEEEEEEEECCC-----CEEEEEEEEEECCC
Confidence 4555667643 456799999999853 46899999754221110 122 23467899887654
No 9
>PF13089 PP_kinase_N: Polyphosphate kinase N-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=35.07 E-value=36 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHhhhcCCCCH-HHHHHHHHHHHh
Q 018648 6 LLDLADECEDP-YMRLVYASSWAL 28 (352)
Q Consensus 6 lL~~Aa~~~dp-~eRm~~V~af~i 28 (352)
.|+.|++...| +||+++++.|+-
T Consensus 16 VL~eA~d~~~PllERl~Fl~I~ss 39 (109)
T PF13089_consen 16 VLEEAADEDVPLLERLKFLAIFSS 39 (109)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHhhhhc
Confidence 68999999999 899999988864
No 10
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=32.80 E-value=74 Score=22.94 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=24.5
Q ss_pred cchhHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 018648 250 LRPDRYALEKGDLSKAGSEKSRLEERQRAEK 280 (352)
Q Consensus 250 ~RpD~rale~Gd~d~A~~eK~~LEe~QR~~r 280 (352)
|+-|.||.+...++..-.+|....+.++..+
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~ 31 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEER 31 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999988877766433
No 11
>PF14038 YqzE: YqzE-like protein
Probab=26.53 E-value=31 Score=24.71 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=12.4
Q ss_pred HHHHHhcCCCceeccee
Q 018648 280 KRIREAKDDMFTPKWFD 296 (352)
Q Consensus 280 rk~r~~~~~~~~Pr~F~ 296 (352)
|.+|++..++|.-+||-
T Consensus 28 k~~rK~~k~p~~~rWFG 44 (54)
T PF14038_consen 28 KEERKEEKEPFSYRWFG 44 (54)
T ss_pred HHHHHhcCCcHHHHHHh
Confidence 34456677899999994
No 12
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.12 E-value=5.6e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCCCEEEEEEeeCccccCceeEEEEEEECCCCCceEEEeeEeeceeee
Q 018648 147 TTGDKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESMSY 194 (352)
Q Consensus 147 ~tg~~a~i~F~~~~~~g~~~~~v~G~I~~~~g~~~~~i~G~W~~~i~~ 194 (352)
+++.++.++|.-- .|+.+.|.-.|.+++|+++++-.++=-+...+
T Consensus 42 ~~~~~~~~~fqV~---tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f 86 (209)
T KOG1693|consen 42 KDDDTTSFEFQVQ---TGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLF 86 (209)
T ss_pred cCCceEEEEEEEE---eCCceeeEEEEECCCCCEEeeccccccccEEE
Confidence 4455688888752 34678899999999999998877664444443
No 13
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=24.09 E-value=83 Score=25.80 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=15.9
Q ss_pred CCCCCcCCCceEEEEecCCe
Q 018648 38 WKPFNPVLGETFEMVNHGGV 57 (352)
Q Consensus 38 ~KPfNPiLGETfe~~~~~g~ 57 (352)
.||||+|--||+++++-..+
T Consensus 76 Gk~FnslEpE~ChvvfV~~V 95 (110)
T PF07576_consen 76 GKPFNSLEPETCHVVFVKSV 95 (110)
T ss_pred CCccCCCCCceeEEEEEEEE
Confidence 59999999999998753333
No 14
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=23.89 E-value=2.9e+02 Score=24.68 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCEEEEEEeeCccccCceeEEEEEEECCCCCceEEEeeEeecee
Q 018648 138 PGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDAAEQPKILMTGKWNESM 192 (352)
Q Consensus 138 ~G~~~i~~~~tg~~a~i~F~~~~~~g~~~~~v~G~I~~~~g~~~~~i~G~W~~~i 192 (352)
.|.|+|.+.+.......+| ++|+|.+ ....--++++|...-
T Consensus 37 ~G~l~i~glt~~~p~itTf------------FeGEII~--~~~~~F~T~~W~a~~ 77 (176)
T PF09783_consen 37 CGYLEIKGLTDDHPEITTF------------FEGEIIG--FNKHSFLTEKWGANE 77 (176)
T ss_pred EEEEEEecCCCCCCcEEEE------------EeeEEec--CCCCceeccccCCCc
Confidence 4667787766655555554 4788885 233445667887554
No 15
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=23.56 E-value=73 Score=24.45 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.4
Q ss_pred EEEeeccccCCCeeEEEEEcCC
Q 018648 58 TFIAEQVSHHPPMSAGHAENEH 79 (352)
Q Consensus 58 ~~iaEQVSHHPPIsA~~~e~~~ 79 (352)
-+++-||+..||.-+++|-.++
T Consensus 29 i~Y~tQv~~~PPtFv~f~N~~~ 50 (80)
T PF14714_consen 29 IYYATQVGTRPPTFVLFVNDPE 50 (80)
T ss_dssp EEEEEEEETTTTEEEEEES-CC
T ss_pred EEEEEeCCCCCCEEEEEeCCcc
Confidence 3578899999999999986543
No 16
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=22.21 E-value=31 Score=27.99 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.0
Q ss_pred eEEEeeccccCCCeeEEE
Q 018648 57 VTFIAEQVSHHPPMSAGH 74 (352)
Q Consensus 57 ~~~iaEQVSHHPPIsA~~ 74 (352)
+-.+|||.-|||=|+..|
T Consensus 49 vA~~Ae~~~HHPdi~~~y 66 (101)
T COG2154 49 VAEIAEKLNHHPDIEVVY 66 (101)
T ss_pred HHHHHHHhCCCCCeEEEe
Confidence 456899999999998854
No 17
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=20.40 E-value=1.7e+02 Score=18.75 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHH
Q 018648 254 RYALEKGDLSKAGSEKSRLEERQR 277 (352)
Q Consensus 254 ~rale~Gd~d~A~~eK~~LEe~QR 277 (352)
..|.++-|++.|..-+.+|...+.
T Consensus 12 ~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 12 EEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHc
Confidence 468899999999999999987654
Done!