Query 018648
Match_columns 352
No_of_seqs 184 out of 1062
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 1.6E-80 5.4E-85 618.4 32.0 279 1-300 51-371 (438)
2 3twe_A Alpha4H; unknown functi 64.4 9.5 0.00032 21.7 3.5 21 265-285 3-23 (27)
3 4g3b_A Alpha4F3D; alpha helix, 63.0 11 0.00036 21.3 3.5 21 265-285 3-23 (26)
4 2c5i_P Vacuolar protein sortin 47.8 4.8 0.00016 23.9 0.4 10 61-70 1-10 (29)
5 3sbu_A Hypothetical NTF2-like 42.5 25 0.00084 31.8 4.4 40 120-159 206-247 (261)
6 2w6b_A RHO guanine nucleotide 34.3 38 0.0013 23.3 3.2 21 264-284 25-45 (56)
7 3syn_E ATP-binding protein YLX 20.8 50 0.0017 18.0 1.5 19 259-277 3-21 (23)
8 2lll_A Lamin-B2; immunoglobuli 19.2 3.5E+02 0.012 21.9 7.2 80 94-183 33-124 (139)
9 2v2f_A Penicillin binding prot 16.1 68 0.0023 17.9 1.5 14 171-184 7-20 (26)
10 3l4f_A RHO guanine nucleotide 15.8 1.6E+02 0.0055 20.6 3.6 21 264-284 22-42 (61)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=1.6e-80 Score=618.39 Aligned_cols=279 Identities=24% Similarity=0.409 Sum_probs=249.7
Q ss_pred CCccHHHhhhcCCC----------C------HHHHHHHHHHHHhhhhcc-c-------ccCCCCCCcCCCceEEEEecC-
Q 018648 1 MEYSHLLDLADECE----------D------PYMRLVYASSWALSIYFA-Y-------RRAWKPFNPVLGETFEMVNHG- 55 (352)
Q Consensus 1 leY~~lL~~Aa~~~----------d------p~eRm~~V~af~iS~~~~-~-------~r~~KPfNPiLGETfe~~~~~- 55 (352)
|||++||++||..+ | |++||++|++|+||+|+. + .+++|||||||||||+|.+++
T Consensus 51 ~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~ 130 (438)
T 1zhx_A 51 AEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENK 130 (438)
T ss_dssp CSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCT
T ss_pred hhhHHHHhhhhhcccccccccccCCccccCCHHHHHHHHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCc
Confidence 68999999998876 9 999999999999999863 2 578999999999999999854
Q ss_pred -----C-eEEEeeccccCCCeeEEEEEcC--CeEEEEEeeeEEEEEee-EEEEEEeeEEEEEEecCCeEEEEecCCceee
Q 018648 56 -----G-VTFIAEQVSHHPPMSAGHAENE--HFIYDVTSKLRTKFLGN-SIDVYPVGRTRVTLKRDGVVLDLVPPPTKVH 126 (352)
Q Consensus 56 -----g-~~~iaEQVSHHPPIsA~~~e~~--~~~~~~~~~~~~kF~G~-sv~~~~~G~~~i~~~~~ge~y~~~~p~~~v~ 126 (352)
| ++|||||||||||||||||+|+ +|.++|+..+++||+|+ ||+|.+.|.++|+|. ||+|+|++|+++|+
T Consensus 131 ~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g~~~~kskF~G~~Sv~v~~~G~~~l~l~--~E~Y~~t~P~~~v~ 208 (438)
T 1zhx_A 131 EHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVKQFGHTMLDIK--DESYLVTPPPLHIE 208 (438)
T ss_dssp TCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEEEEEEEEEECTTCCEEEEEECCEEEEET--TEEEEEECCCEEEE
T ss_pred cCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEEEEeeeEEEEcCceEEEEEcceEEEEEEC--CcEEEEecCcEEEE
Confidence 6 8999999999999999999997 59999999999999999 999999999999997 89999999999999
Q ss_pred eeecCceeEecCCcEEEEeCCCCCEEEEEEeeCccccCceeEEEEEEECC------CCCceEEEeeEeeceeeeeeCCCC
Q 018648 127 NLIFGRTWIDSPGDMVMTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDA------AEQPKILMTGKWNESMSYQPCDSE 200 (352)
Q Consensus 127 nii~G~~~~e~~G~~~i~~~~tg~~a~i~F~~~~~~g~~~~~v~G~I~~~------~g~~~~~i~G~W~~~i~~~~~~~~ 200 (352)
|||+|++|+|++|+|.|+| +||++|+|+|+++||||++.+.|+|.|++. +|+++++|+|+|++.|++....++
T Consensus 209 gIi~G~~~vE~~G~~~I~~-~tg~~~~l~F~~kg~f~g~~n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~ 287 (438)
T 1zhx_A 209 GILVASPFVELEGKSYIQS-STGLLCVIEFSGRGYFSGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK 287 (438)
T ss_dssp CTTTTCCEEEECSEEEEEE-TTSCEEEEEEECSSSSCSSSSEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG
T ss_pred EEEecceeEecCCeEEEEc-CCCCEEEEEEcCCCCcCCCccEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCC
Confidence 9999999999999999999 799999999999999999999999999985 567899999999999999765421
Q ss_pred CCcCCCCceeEeEeeccCCCCCccccceeeeecCCCCCCCCcCCCCCccc--chhHHHHHcCChhHHHHHHHHHHHHHHH
Q 018648 201 GEPLPGTELKEVWRVADAPEDDKYQYTYFTHKLNSFDTAPKKLLPSDSRL--RPDRYALEKGDLSKAGSEKSRLEERQRA 278 (352)
Q Consensus 201 g~~~~~~~~~~lW~~~~~p~~~~~~ft~fa~~Lne~~~~~~~~~ptDSR~--RpD~rale~Gd~d~A~~eK~~LEe~QR~ 278 (352)
.....+|++++.+... + .+ .+ ...++|||||+ |||+|||++||+|.|+++|.+|||+||+
T Consensus 288 ------~~~~~~~~~~~~~~~~------~--~v---~p-~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~ 349 (438)
T 1zhx_A 288 ------EESRLFYDAARIPAEH------L--NV---KP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRE 349 (438)
T ss_dssp ------GGCEEEEETTTSCCCC------C--BC---CC-GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------ccceEEeccCCCCCcc------c--cC---CC-hhhCCCcccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1135699998765421 1 11 11 13568999997 8999999999999999999999999999
Q ss_pred HHHHHHhcCCCceecceeecCC
Q 018648 279 EKRIREAKDDMFTPKWFDLSDE 300 (352)
Q Consensus 279 ~rk~r~~~~~~~~Pr~F~~~~~ 300 (352)
+||+|+++|++|+||||+++++
T Consensus 350 ~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 350 LRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp HHHHHHHHTCCCCCSSEEEEEC
T ss_pred HHHHHHHcCCCcccceEEECCc
Confidence 9999999999999999999876
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=64.40 E-value=9.5 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018648 265 AGSEKSRLEERQRAEKRIREA 285 (352)
Q Consensus 265 A~~eK~~LEe~QR~~rk~r~~ 285 (352)
|.+.-..||+.|...||+|++
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677899999998988875
No 3
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=63.04 E-value=11 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 018648 265 AGSEKSRLEERQRAEKRIREA 285 (352)
Q Consensus 265 A~~eK~~LEe~QR~~rk~r~~ 285 (352)
|.+.-..||+.|...||.|++
T Consensus 3 ade~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXRKK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 555667899999888888864
No 4
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=47.79 E-value=4.8 Score=23.92 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=2.7
Q ss_pred eeccccCCCe
Q 018648 61 AEQVSHHPPM 70 (352)
Q Consensus 61 aEQVSHHPPI 70 (352)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6888887765
No 5
>3sbu_A Hypothetical NTF2-like protein; cystatin-like, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; HET: MLY; 2.15A {Bacteroides fragilis}
Probab=42.53 E-value=25 Score=31.82 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.1
Q ss_pred cCCceeeeeecCceeE-ecCCc-EEEEeCCCCCEEEEEEeeC
Q 018648 120 PPPTKVHNLIFGRTWI-DSPGD-MVMTNLTTGDKVVLYFQPC 159 (352)
Q Consensus 120 ~p~~~v~nii~G~~~~-e~~G~-~~i~~~~tg~~a~i~F~~~ 159 (352)
+|.-.|.||+.|.+|. +-..+ +.|+.-.+|+..++.|+..
T Consensus 206 lP~~~i~NI~YGQky~~~s~~KIl~~rGi~NG~e~~l~Fkk~ 247 (261)
T 3sbu_A 206 LPADXLSNINYGQQNDDNASHKILALXGIGNGFSNILYFQRX 247 (261)
T ss_dssp CCSSEEEEEESSCCCCTTCSEEEEEEEESSSCCEEEEEEEEE
T ss_pred cCcccceeeeccccccCCCCceEEEEEeecCceeEEEEEeec
Confidence 4888999999999994 44333 5667788999999999865
No 6
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=34.28 E-value=38 Score=23.27 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018648 264 KAGSEKSRLEERQRAEKRIRE 284 (352)
Q Consensus 264 ~A~~eK~~LEe~QR~~rk~r~ 284 (352)
+-...|.-||+.||+++++.+
T Consensus 25 e~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 25 DNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999998776643
No 7
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.76 E-value=50 Score=18.04 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=13.5
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 018648 259 KGDLSKAGSEKSRLEERQR 277 (352)
Q Consensus 259 ~Gd~d~A~~eK~~LEe~QR 277 (352)
-+.+|+|.....++|.+.|
T Consensus 3 mnrydqaatlrakmekrer 21 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRER 21 (26)
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 3567888888888876554
No 8
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=19.17 E-value=3.5e+02 Score=21.90 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=45.0
Q ss_pred eeEEEEEEeeEEEEEEe--------cCCeEEEEecCCceeeeeecCceeEecCCcEEEEeCCCCCE----EEEEEeeCcc
Q 018648 94 GNSIDVYPVGRTRVTLK--------RDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDK----VVLYFQPCGW 161 (352)
Q Consensus 94 G~sv~~~~~G~~~i~~~--------~~ge~y~~~~p~~~v~nii~G~~~~e~~G~~~i~~~~tg~~----a~i~F~~~~~ 161 (352)
|++|.+.+.|...+.|. ...+...|++|..+ .|.-.+.++|-....|.. ..|.++...-
T Consensus 33 GefV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~---------~L~pg~~VtIws~~~g~~~~pp~dlv~~~q~s 103 (139)
T 2lll_A 33 GKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKY---------ILRAGQMVTVWAAGAGVAHSPPSTLVWKGQSS 103 (139)
T ss_dssp CSEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTC---------EECTTCEEEEEEGGGTCCCBTTTEEEETTCSS
T ss_pred CCEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCc---------EECCCCEEEEEeCCCCCCCCCchhEEEecccc
Confidence 56677776654433332 12355888888632 122345667776544432 3566654443
Q ss_pred ccCceeEEEEEEECCCCCceEE
Q 018648 162 FGAGRYEVDGYVYDAAEQPKIL 183 (352)
Q Consensus 162 ~g~~~~~v~G~I~~~~g~~~~~ 183 (352)
|+.+. .+...++|++|+.+..
T Consensus 104 Wg~G~-~~~T~L~n~~GEevAt 124 (139)
T 2lll_A 104 WGTGE-SFRTVLVNADGEEVAM 124 (139)
T ss_dssp SSCCS-EEEEEEECTTSCEEEE
T ss_pred cCCCC-CEEEEEECCCCCEEEE
Confidence 44333 3456788999987654
No 9
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=16.06 E-value=68 Score=17.94 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred EEEECCCCCceEEE
Q 018648 171 GYVYDAAEQPKILM 184 (352)
Q Consensus 171 G~I~~~~g~~~~~i 184 (352)
-.|||++|+.+..|
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 36899999887776
No 10
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=15.77 E-value=1.6e+02 Score=20.60 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018648 264 KAGSEKSRLEERQRAEKRIRE 284 (352)
Q Consensus 264 ~A~~eK~~LEe~QR~~rk~r~ 284 (352)
+....|.-+|+.||+++++++
T Consensus 22 e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 22 DNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999877764
Done!