BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018649
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 343 bits (880), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 175/320 (54%), Positives = 227/320 (70%), Gaps = 3/320 (0%)
Query: 31 VGYSPEDLTSNDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYW 90
VGYS +DLTS ++LI LF SWM K YE++DEKL RFEIFKDNL +IDETN+K +YW
Sbjct: 5 VGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYW 64
Query: 91 LGLNEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVK 150
LGLNEFADL ++EF E ++G D A + E+F +D+V+LP++VDWRKKGAVT V+
Sbjct: 65 LGLNEFADLSNDEFNEKYVGSLID-ATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVR 123
Query: 151 NQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIV 210
+QGSCGSCWAFS VA VEGIN+I TG L LSEQEL+DC+ ++GC GG YA +Y V
Sbjct: 124 HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEY-V 181
Query: 211 STGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIE 270
+ G+H YPY ++GTC + +V +G V N+E +LL A+A QP+SV +E
Sbjct: 182 AKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVE 241
Query: 271 ASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
+ GR FQ Y GG+++G CGT++D V AVGYG + G YI++KNSWG WGEKGYIR+KR
Sbjct: 242 SKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR 301
Query: 331 NTGKPEGLCGINKMASYPIK 350
G G+CG+ K + YP K
Sbjct: 302 APGNSPGVCGLYKSSYYPTK 321
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/320 (50%), Positives = 216/320 (67%), Gaps = 6/320 (1%)
Query: 31 VGYSPEDLTSNDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYW 90
VGYS DLTS ++LI LFESWM K K+Y+++DEK+ RFEIFKDNL++IDETN+K +YW
Sbjct: 49 VGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYW 108
Query: 91 LGLNEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVK 150
LGLN FAD+ ++EFKE + G + S+E+ V++P+ VDWR+KGAVT VK
Sbjct: 109 LGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVK 168
Query: 151 NQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIV 210
NQGSCGS WAFS V+ +E I +I TGNL SEQEL+DCD + GCNGG A Q +V
Sbjct: 169 NQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQ-LV 226
Query: 211 STGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIE 270
+ G+H YPY + C + +G V +E +LL ++ANQP+SV +E
Sbjct: 227 AQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLE 286
Query: 271 ASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
A+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI+++NSWG WGE GYIR+KR
Sbjct: 287 AAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKR 342
Query: 331 NTGKPEGLCGINKMASYPIK 350
TG G+CG+ + YP+K
Sbjct: 343 GTGNSYGVCGLYTSSFYPVK 362
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/219 (65%), Positives = 172/219 (78%), Gaps = 1/219 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P SVDWRKKGAVT VK+QG CGSCWAFST+ AVEGINQI T L SLSEQEL+DCD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAF++I GG+ E +YPY +GTC+++K + V+I+G+ +VP+N E
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGST-RGLDYIIV 312
++LLKA+ANQP+SVAI+A G DFQFYS GV+ G CGT+LDHGVA VGYG+T G Y V
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIKK 351
KNSWGP+WGEKGYIRM+R EGLCGI ASYPIKK
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 166/224 (74%), Gaps = 4/224 (1%)
Query: 131 VVDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCD 190
V DLP SVDWR+KGAVT VK+QG CGSCWAFSTV +VEGIN I TG+L SLSEQELIDCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 191 NTYNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESE---VVTINGYHD 247
N+GC GGLMD AF+YI + GGL E YPY GTC + + VV I+G+ D
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 248 VPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTR-G 306
VP NSE+ L +A+ANQP+SVA+EASG+ F FYS GV+ G CGT+LDHGVA VGYG G
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 307 LDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
Y VKNSWGP WGE+GYIR+++++G GLCGI ASYP+K
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/219 (58%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
DLP S+DWR+ GAV VKNQG CGSCWAFSTVAAVEGINQIVTG+L SLSEQ+L+DC T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC-TT 60
Query: 193 YNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N+GC GG M+ AFQ+IV+ GG++ EE YPY ++G C T + VV+I+ Y +VP ++
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTV-NAPVVSIDSYENVPSHN 119
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIV 312
E SL KA+ANQP+SV ++A+GRDFQ Y G++ G C +H + VGYG+ D+ IV
Sbjct: 120 EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIV 179
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIKK 351
KNSWG WGE GYIR +RN P+G CGI + ASYP+KK
Sbjct: 180 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 154/216 (71%), Gaps = 2/216 (0%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+S+DWR KGAVT VKNQG+CGS WAFST+A VEGIN+IVTGNL LSEQEL+DCD ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK-HS 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
GC GG + QY V+ G+H + YPY ++ C T V I GY VP N E
Sbjct: 61 YGCKGGYQTTSLQY-VANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 255 SLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKN 314
S L ALANQPLSV +EA G+ FQ Y GV+DG CGT+LDH V AVGYG++ G +YII+KN
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKN 179
Query: 315 SWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
SWGP WGEKGY+R+KR +G +G CG+ K + YP K
Sbjct: 180 SWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 160/218 (73%), Gaps = 2/218 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP VDWR GAV +K+QG CGSCWAFST+AAVEGIN+I TG+L SLSEQEL+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 194 NN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GC+GG M FQ+I++ GG++ E +YPY EEG C + + + V+I+ Y +VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIV 312
E +L A+A QP+SVA+EA+G +FQ YS G++ G CGT +DH V VGYG+ G+DY IV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
KNSWG WGE+GY+R++RN G G CGI K ASYP+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPVK 217
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 159/218 (72%), Gaps = 2/218 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP VDWR GAV +K+QG CGS WAFST+AAVEGIN+I TG+L SLSEQEL+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 194 NN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GC+GG M FQ+I++ GG++ E +YPY EEG C + + + V+I+ Y +VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIV 312
E +L A+A QP+SVA+EA+G +FQ YS G++ G CGT +DH V VGYG+ G+DY IV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
KNSWG WGE+GY+R++RN G G CGI K ASYP+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPVK 217
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 156/217 (71%), Gaps = 3/217 (1%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP VDWR KGAV +KNQ CGSCWAFS VAAVE IN+I TG L SLSEQEL+DCD T
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD-TA 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
++GCNGG M+ AFQYI++ GG+ +++YPY +G+C+ + VV+ING+ V +N+E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNE 117
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+L A+A+QP+SV +EA+G FQ YS G++ G CGT +HGV VGYG+ G +Y IV+
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVR 177
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WG +GYI M+RN GLCGI ++ SYP K
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 156/216 (72%), Gaps = 6/216 (2%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+S+DWR+KGAVT VKNQ CGSCWAFSTVA +EGIN+I+TG L SLSEQEL+DC+ +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC+GG + QY+V G +H E +YPY ++G C + V I GY VP N E
Sbjct: 61 HGCDGGYQTTSLQYVVDNG-VHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 255 SLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKN 314
SL++A+ANQP+SV ++ GR FQFY GG+Y+G CGT DH V AVGYG T Y+++KN
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT----YLLLKN 175
Query: 315 SWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
SWGP WGEKGYIR+KR +G+ +G CG+ + +PIK
Sbjct: 176 SWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/217 (57%), Positives = 153/217 (70%), Gaps = 10/217 (4%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP+ +DWRKKGAVT VKNQG CGSCWAFSTV+ VE INQI TGNL SLSEQ+L+DC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDC-NKK 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N+GC GG YA+QYI+ GG+ E +YPY +G C K +VV I+GY VP +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAK---KVVRIDGYKGVPHCNE 116
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
++L KA+A+QP VAI+AS + FQ Y G++ G CGT+L+HGV VGY DY IV+
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVR 172
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE+GYIRMKR G GLCGI ++ YP K
Sbjct: 173 NSWGRYWGEQGYIRMKRVGG--CGLCGIARLPYYPTK 207
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/218 (54%), Positives = 152/218 (69%), Gaps = 2/218 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP VDWR GAV +K+QG CG CWAFS +A VEGIN+IVTG L SLSEQELIDC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 194 NN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GCNGG + FQ+I++ GG++ EE+YPY ++G C + + VTI+ Y +VP N+
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIV 312
E +L A+ QP+SVA++A+G F+ YS G++ G CGT +DH V VGYG+ G+DY IV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
KNSW WGE+GY+R+ RN G G CGI M SYP+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGG-AGTCGIATMPSYPVK 217
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 157/217 (72%), Gaps = 10/217 (4%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP+ +DWRKKGAVT VKNQGSCGSCWAFSTV+ VE INQI TGNL SLSEQEL+DCD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N+GC GG +A+QYI++ GG+ + +YPY +G C+ S+VV+I+GY+ VP +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAA---SKVVSIDGYNGVPFCNE 116
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+L +A+A QP +VAI+AS FQ YS G++ G CGT+L+HGV VGY + +Y IV+
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQA----NYWIVR 172
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGEKGYIRM R G GLCGI ++ YP K
Sbjct: 173 NSWGRYWGEKGYIRMLRVGGC--GLCGIARLPYYPTK 207
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 150/217 (69%), Gaps = 10/217 (4%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP+ VDWR KGAV +KNQG CGSCWAFSTV VE INQI TGNL SLSEQ+L+DC
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N+GC GG D A+QYI++ GG+ E +YPY +G C K +VV I+G VPQ +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK---KVVRIDGCKGVPQCNE 116
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
++L A+A+QP VAI+AS + FQ Y GG++ G CGT+L+HGV VGYG DY IV+
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVR 172
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE+GY RMKR G GLCGI ++ YP K
Sbjct: 173 NSWGRHWGEQGYTRMKRVGG--CGLCGIARLPFYPTK 207
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 154/217 (70%), Gaps = 2/217 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP+SVDWR KGAVT VK+QG C SCWAFSTVA VEGIN+I TGNL LSEQEL+DCD
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCD-LQ 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCN G + QY V+ G+H YPYI ++ TC + V NG V N+E
Sbjct: 60 SYGCNRGYQSTSLQY-VAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
SLL A+A+QP+SV +E++GRDFQ Y GG+++G CGT++DH V AVGYG + G YI++K
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWGP WGE GYIR++R +G G+CG+ + + YPIK
Sbjct: 179 NSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 153/218 (70%), Gaps = 2/218 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP VDWR GAV +K+QG CG WAFS +A VEGIN+I +G+L SLSEQELIDC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 194 NN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GC+GG + FQ+I++ GG++ EE+YPY ++G C++ + + VTI+ Y +VP N+
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIV 312
E +L A+ QP+SVA++A+G F+ Y+ G++ G CGT +DH + VGYG+ G+DY IV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 313 KNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
KNSW WGE+GY+R+ RN G G CGI M SYP+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGG-AGTCGIATMPSYPVK 217
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 153/217 (70%), Gaps = 2/217 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP++VDWRKKGAVT V++QGSCGSCWAFS VA VEGIN+I TG L LSEQEL+DC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
++GC GG YA +Y V+ G+H YPY ++GTC + +V +G V N+E
Sbjct: 60 SHGCKGGYPPYALEY-VAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL A+A QP+SV +E+ GR FQ Y GG+++G CGT++DH V AVGYG + G YI++K
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGEKGYIR+KR G G+CG+ K + YP K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 153/217 (70%), Gaps = 2/217 (0%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP++VDWRKKGAVT V++QGSCGSCWAFS VA VEGIN+I TG L LSEQEL+DC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
++GC GG YA +Y V+ G+H YPY ++GTC + +V +G V N+E
Sbjct: 60 SHGCKGGYPPYALEY-VAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL A+A QP+SV +E+ GR FQ Y GG+++G CGT+++H V AVGYG + G YI++K
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIK 178
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGEKGYIR+KR G G+CG+ K + YP K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 155/219 (70%), Gaps = 6/219 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P S+DWR+KGAVT V+NQG CGSCW FS+VAAVEGIN+IVTG L SLSEQEL+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GC GG YA QY+ ++ G+H + YPY + C ++ + V +G VP+N+E
Sbjct: 60 SYGCRGGFPLYALQYVANS-GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+L++ +A QP+S+ +EA GR FQ Y GG++ G CGT +DH VAAVGYG+ DYI++K
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN----DYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIKKK 352
NSWG WGE GYIR+KR +G P+G CG+ + +P K +
Sbjct: 175 NSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTKNR 213
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 144/217 (66%), Gaps = 6/217 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P+ VDWR+KGAVT VKNQGSCGSCWAFS V +EGI +I TGNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCNGG A Q +V+ G+H YPY + C + +G V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL ++ANQP+SV +EA+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 144/217 (66%), Gaps = 6/217 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P+ VDWR+KGAVT VKNQGSCGSCWAFS V +EGI +I TGNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCNGG A Q +V+ G+H YPY + C + +G V ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL ++ANQP+SV ++A+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++K
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 178/310 (57%), Gaps = 17/310 (5%)
Query: 48 FESWMSKFEKVYESLDEKLERFEIFKDNLRHID----ETNRKIKNYWLGLNEFADLRHEE 103
+E W K Y + +++ R I++ NL++I E + + Y L +N D+ EE
Sbjct: 11 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEE 70
Query: 104 FKEMFLGLKPDLARRKDQSHEDFSYKDVVD--LPKSVDWRKKGAVTHVKNQGSCGSCWAF 161
+ GLK L+ + D Y + P SVD+RKKG VT VKNQG CGSCWAF
Sbjct: 71 VVQKMTGLKVPLSHSRSN---DTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAF 127
Query: 162 STVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDY 221
S+V A+EG + TG L +LS Q L+DC + N+GC GG M AFQY+ G+ E+ Y
Sbjct: 128 SSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKNRGIDSEDAY 186
Query: 222 PYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYS 280
PY+ +E +C M + GY ++P+ +E +L +A+A P+SVAI+AS FQFYS
Sbjct: 187 PYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYS 245
Query: 281 GGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGL 338
GV YD C + L+H V AVGYG +G + I+KNSWG WG KGYI M RN
Sbjct: 246 KGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA--- 302
Query: 339 CGINKMASYP 348
CGI +AS+P
Sbjct: 303 CGIANLASFP 312
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 143/216 (66%), Gaps = 6/216 (2%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+ VDWR+KGAVT VKNQGSCGSCWAFS V +EGI +I TGNL SEQEL+DCD +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
GCNGG A Q +V+ G+H YPY + C + +G V ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 255 SLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKN 314
+LL ++ANQP+SV ++A+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++KN
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIKN 175
Query: 315 SWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
SWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 143/217 (65%), Gaps = 6/217 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P+ VDWR+KGAVT VKNQGSCGS WAFS V +EGI +I TGNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCNGG A Q +V+ G+H YPY + C + +G V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL ++ANQP+SV +EA+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 143/217 (65%), Gaps = 6/217 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P+ VDWR+KGAVT VKNQGSCGS WAFS V +EGI +I TGNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCNGG A Q +V+ G+H YPY + C + +G V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL ++ANQP+SV +EA+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 181/311 (58%), Gaps = 22/311 (7%)
Query: 51 WMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIK----NYWLGLNEFADLRHEEFKE 106
W + ++Y ++E+ R +++ N++ I+ N++ + ++ + +N F D+ EEF++
Sbjct: 11 WKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 69
Query: 107 MFLGLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAA 166
+ GL+ R+ E Y + P+SVDWR+KG VT VKNQG CGS WAFS A
Sbjct: 70 VMNGLQNRKPRKGKVFQEPLFY----EAPRSVDWREKGYVTPVKNQGQCGSSWAFSATGA 125
Query: 167 VEGINQIVTGNLASLSEQELIDCDNTYNN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIM 225
+EG TG L SLSEQ L+DC N GCNGGLMDYAFQY+ GGL EE YPY
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEA 185
Query: 226 EEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVY 284
E +C+ S V G+ D+P+ E +L+KA+A P+SVAI+A F FY G+Y
Sbjct: 186 TEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYKEGIY 243
Query: 285 -DGHCGTQ-LDHGVAAVGYG----STRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGL 338
+ C ++ +DHGV VGYG + G Y +VKNSWG +WG GY++M ++
Sbjct: 244 FEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR---RNH 300
Query: 339 CGINKMASYPI 349
CGI ASYP
Sbjct: 301 CGIASAASYPT 311
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 6/217 (2%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
+P+ VDWR+KGAVT VKNQGSCGS WAFS V +EGI +I TGNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 194 NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
+ GCNGG A Q +V+ G+H YPY + C + +G V ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVK 313
+LL ++ANQP+SV ++A+G+DFQ Y GG++ G CG ++DH VAAVGYG +YI++K
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350
NSWG WGE GYIR+KR TG G+CG+ + YP+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 143/220 (65%), Gaps = 5/220 (2%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+LP VDWR +G VT VK+Q CGSCWAFST A+EG + TG L SLSEQEL+DC
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 193 Y-NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N C+GG M+ AFQY++ +GG+ E+ YPY+ + C E +VV I G+ DVP+
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCE-KVVKILGFKDVPRR 124
Query: 252 SEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTR--GLDY 309
SE ++ ALA P+S+AIEA FQFY GV+D CGT LDHGV VGYG+ + D+
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDF 184
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
I+KNSWG WG GY+ M + G+ EG CG+ AS+P+
Sbjct: 185 WIMKNSWGTGWGRDGYMYMAMHKGE-EGQCGLLLDASFPV 223
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 140/317 (44%), Positives = 178/317 (56%), Gaps = 26/317 (8%)
Query: 47 LFESWMSKFE----KVYESLDEKLERFEIFKDNLRHIDETNRKIK----NYWLGLNEFAD 98
LF+ S+F+ K Y S E++ R IFKDN+ I E N K + Y +N+F D
Sbjct: 22 LFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGD 81
Query: 99 LRHEEFKEMFLGLKPDLARRKDQSHEDFSYKDVVD---LPKSVDWRKKGAVTHVKNQGSC 155
+ EEF L +K + E+ V L SVDWR AV+ VK+QG C
Sbjct: 82 MSKEEF----LAYVNRGKAQKPKHPENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQC 136
Query: 156 GSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNN-GCNGGLMDYAFQYIVSTGG 214
GS W+FST AVEG + G L SLSEQ LIDC ++Y N GC+GG MD AF YI G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY-G 195
Query: 215 LHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQ-PLSVAIEASG 273
+ E YPY + C +S V T++GY+D+P E+SL A+ P++VAI+A+
Sbjct: 196 IMSESAYPYEAQGDYCRFDSSQS-VTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT- 253
Query: 274 RDFQFYSGGV-YDGHCG-TQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRN 331
+ QFYSGG+ YD C + L+HGV VGYGS G DY I+KNSWG WGE GY R RN
Sbjct: 254 DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRN 313
Query: 332 TGKPEGLCGINKMASYP 348
G CGI ASYP
Sbjct: 314 YGNN---CGIATAASYP 327
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 186/324 (57%), Gaps = 22/324 (6%)
Query: 38 LTSNDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIK----NYWLGL 93
LT + L + W + ++Y ++E+ R +++ N++ I+ N++ + ++ + +
Sbjct: 2 LTFDHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 94 NEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVKNQG 153
N F D+ EEF+++ G + R+ E Y + P+SVDWR+KG VT VKNQG
Sbjct: 61 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFY----EAPRSVDWREKGYVTPVKNQG 116
Query: 154 SCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY-NNGCNGGLMDYAFQYIVST 212
CGS WAFS A+EG TG L SLSEQ L+DC N GCNGGLMDYAFQY+
Sbjct: 117 QCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 176
Query: 213 GGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEA 271
GGL EE YPY E +C+ S V G+ D+P+ E +L+KA+A P+SVAI+A
Sbjct: 177 GGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGPISVAIDA 234
Query: 272 SGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD--YIIVKNSWGPKWGEKGY 325
F FY G+Y + C ++ +DHGV VGYG ST + Y +VKNSWG +WG GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 326 IRMKRNTGKPEGLCGINKMASYPI 349
++M ++ CGI ASYP
Sbjct: 295 VKMAKDR---RNHCGIASAASYPT 315
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 174/316 (55%), Gaps = 19/316 (6%)
Query: 46 DLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRK----IKNYWLGLNEFADLRH 101
DL+ W + K Y D++ R I++ N++HI E N + + Y LGLN+F D+
Sbjct: 3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 102 EEFKEMFLGLKPDLARRKDQSHEDFSYK-DVVDLPKSVDWRKKGAVTHVKNQGSCGSCWA 160
EEFK +L +++R D Y+ + +P +DWR+ G VT VK+QG+CGS WA
Sbjct: 62 EEFKAKYL---TEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWA 118
Query: 161 FSTVAAVEGINQIVTGNLASLSEQELIDCDNTY-NNGCNGGLMDYAFQYIVSTGGLHKEE 219
FST +EG S SEQ+L+DC + NNGC GGLM+ A+QY+ G L E
Sbjct: 119 FSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFG-LETES 177
Query: 220 DYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKAL-ANQPLSVAIEASGRDFQF 278
YPY EG C K + V + G++ V SE L + A P +VA++ DF
Sbjct: 178 SYPYTAVEGQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES-DFMM 235
Query: 279 YSGGVYDGHCGTQL--DHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPE 336
Y G+Y + L +H V AVGYG+ G DY IVKNSWG WGE+GYIRM RN G
Sbjct: 236 YRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGN-- 293
Query: 337 GLCGINKMASYPIKKK 352
+CGI +AS P+ +
Sbjct: 294 -MCGIASLASLPMVAR 308
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 144/223 (64%), Gaps = 10/223 (4%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P S+DWRKKGAVT VK+QG+CG CWAF A+EGI+ I TG L S+SEQ+++DCD T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD-TXX 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
GG D AF+++++ GG+ + +YPY +GTC++ K I+GY +VP NS
Sbjct: 61 XXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNK--PIAARIDGYTNVP-NSSS 117
Query: 255 SLLKALANQPLSVAIEASGRDFQFYSG-GVYDG-HCG---TQLDHGVAAVGYGST-RGLD 308
+LL A+A QP+SV I S FQ Y+G G++ G C +DH V VGYGS D
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 309 YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIKK 351
Y IVKNSWG +WG GYI ++RNT +P+G+C I+ SYP K
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS 220
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 168/308 (54%), Gaps = 19/308 (6%)
Query: 51 WMSKFEKVYESLDEKLERFEIFKDNLR----HIDETNRKIKNYWLGLNEFADLRHEEFKE 106
W + K Y+ +E+ R I++ NL+ H E + + +Y LG+N D+ EE
Sbjct: 15 WKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMS 74
Query: 107 MFLGLKPDLARRKDQSHEDFSYKDVVD--LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTV 164
+ L R Q + +YK + LP SVDWR+KG VT VK QGSCG+ WAFS V
Sbjct: 75 LMSSL-----RVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAV 129
Query: 165 AAVEGINQIVTGNLASLSEQELIDCDNTY--NNGCNGGLMDYAFQYIVSTGGLHKEEDYP 222
A+E ++ TG L SLS Q L+DC N GCNGG M AFQYI+ G+ + YP
Sbjct: 130 GALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYP 189
Query: 223 YIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYSG 281
Y + C+ + T + Y ++P ED L +A+AN+ P+SV ++A F Y
Sbjct: 190 YKAMDQKCQY-DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 248
Query: 282 GV-YDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCG 340
GV Y+ C ++HGV VGYG G +Y +VKNSWG +GE+GYIRM RN G CG
Sbjct: 249 GVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CG 305
Query: 341 INKMASYP 348
I SYP
Sbjct: 306 IASFPSYP 313
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 157/264 (59%), Gaps = 17/264 (6%)
Query: 93 LNEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVKNQ 152
+N F D+ EEF+++ G + R+ E Y + P+SVDWR+KG VT VKNQ
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFY----EAPRSVDWREKGYVTPVKNQ 57
Query: 153 GSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNN-GCNGGLMDYAFQYIVS 211
G CGSCWAFS A+EG TG L SLSEQ L+DC N GCNGGLMDYAFQY+
Sbjct: 58 GQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 117
Query: 212 TGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIE 270
GGL EE YPY E +C+ S V G+ D+P+ E +L+KA+A P+SVAI+
Sbjct: 118 NGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-EKALMKAVATVGPISVAID 175
Query: 271 ASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD--YIIVKNSWGPKWGEKG 324
A F FY G+Y + C ++ +DHGV VGYG ST + Y +VKNSWG +WG G
Sbjct: 176 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGG 235
Query: 325 YIRMKRNTGKPEGLCGINKMASYP 348
Y++M ++ CGI ASYP
Sbjct: 236 YVKMAKDR---RNHCGIASAASYP 256
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P SVD+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ +E +C M + GY ++P+ +E
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD C + L+H V AVGYG +G + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG KGYI M RN CGI +AS+P
Sbjct: 180 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 213
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 145/230 (63%), Gaps = 14/230 (6%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
D P+S DW KKG +T VK QG CGS WAFS A+E + I TGNL SLSEQELIDC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 193 YNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGY------- 245
+ GC G +F+++V GG+ E DYPY +G C+ + + + VTI+ Y
Sbjct: 61 -SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSN 118
Query: 246 HDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYD-GHCGTQ--LDHGVAAVGYG 302
+E SL + QP+SV+I+A +DF FYSGG+YD G+C + ++H V VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYG 176
Query: 303 STRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIKKK 352
S G+DY I KNSWG WG GYIR++RNTG G+CG+N ASYPI +K
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEK 226
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P SVD+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ +E +C M + GY ++P+ +E
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 118
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD C + L+H V AVGYG +G + I
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 178
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG KGYI M RN CGI +AS+P
Sbjct: 179 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P SVD+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 62
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ +E +C M + GY ++P+ +E
Sbjct: 63 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 121
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD C + L+H V AVGYG +G + I
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 181
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG KGYI M RN CGI +AS+P
Sbjct: 182 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P S+D+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ ++ +C M + GY ++P+ +E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD +C + L+H V AVGYG +G + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG KGYI M RN CGI +AS+P
Sbjct: 180 IKNSWGESWGNKGYILMARNK---NNACGIANLASFP 213
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P SVD+R+KG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ +E +C M + GY ++P+ +E
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEK 119
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD C + L+H V AVGYG ++G + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWI 179
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG GYI+M RN CGI +AS+P
Sbjct: 180 IKNSWGENWGMGGYIKMARNK---NNACGIANLASFP 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 136/223 (60%), Gaps = 12/223 (5%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LPKSVDWRKKG VT VKNQ CGSCWAFS A+EG TG L SLSEQ L+DC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 194 -NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GCNGG M AFQY+ GGL EE YPY+ + C+ + E+ V G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY-RPENSVAQDTGFTVVAPGK 119
Query: 253 EDSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG----STR 305
E +L+KA+A P+SVA++A FQFY G+Y + C ++ LDHGV VGYG ++
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 306 GLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWGP+WG GY+++ ++ CGI ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDK---NNHCGIATAASYP 219
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 138/215 (64%), Gaps = 8/215 (3%)
Query: 137 SVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNG 196
SVD+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +LS Q L+DC + N+G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDG 60
Query: 197 CNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSL 256
C GG M AFQY+ G+ E+ YPY+ +E +C M + GY ++P+ +E +L
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKAL 119
Query: 257 LKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYIIVK 313
+A+A P+SVAI+AS FQFYS GV YD C + L+H V AVGYG +G + I+K
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 179
Query: 314 NSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
NSWG WG KGYI M RN CGI +AS+P
Sbjct: 180 NSWGENWGNKGYILMARNK---NNACGIANLASFP 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 140/224 (62%), Gaps = 13/224 (5%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+ P+SVDWR+KG VT VKNQG CGSCWAFS A+EG TG L SLSEQ L+DC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 193 YNN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ 119
Query: 252 SEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRG 306
E +L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST
Sbjct: 120 -EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 307 LD--YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+ Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 139/222 (62%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGSCWAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD 308
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 139/222 (62%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGSCWAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD 308
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAY-RAATCRKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GEKGYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCRKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GEKGYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 138/217 (63%), Gaps = 8/217 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P S+D+RKKG VT VKNQG CGSCWAFS+V A+EG + TG L +L+ Q L+DC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-N 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
+GC GG M AFQY+ G+ E+ YPY+ ++ +C M + GY ++P+ +E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEA 119
Query: 255 SLLKALAN-QPLSVAIEASGRDFQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYII 311
+L +A+A P+SVAI+AS FQFYS GV YD +C + L+H V AVGYG G + I
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWI 179
Query: 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+KNSWG WG GYI M RN CGI +AS+P
Sbjct: 180 IKNSWGESWGNAGYILMARNK---NNACGIANLASFP 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 122
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 182
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 138/222 (62%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD 308
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 135/223 (60%), Gaps = 12/223 (5%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LPKSVDWRKKG VT VKNQ CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 194 -NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
N GCNGG M AFQY+ GGL EE YPY+ + C+ + E+ V G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKY-RPENSVAQDTGFTVVAPGK 119
Query: 253 EDSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG----STR 305
E +L+KA+A P+SVA++A FQFY G+Y + C ++ LDHGV VGYG ++
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 306 GLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWGP+WG GY+++ ++ CGI ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDK---NNHCGIATAASYP 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 139/224 (62%), Gaps = 13/224 (5%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+ P+SVDWR+KG VT VKNQG CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 193 YNN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ 119
Query: 252 SEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRG 306
E +L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST
Sbjct: 120 -EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 307 LD--YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+ Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 219
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ TG L +LS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 138/222 (62%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD 308
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 138/222 (62%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG--STRGLD 308
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG ST +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 120
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYG 121
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 181
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ TG L SLS Q L+DC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 194 --NNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
N GCNGG M AFQYI+ G+ + YPY + C+ + T + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDS-KYRAATCSKYTELPYG 119
Query: 252 SEDSLLKALANQ-PLSVAIEASGRDFQFYSGGV-YDGHCGTQLDHGVAAVGYGSTRGLDY 309
ED L +A+AN+ P+SV ++A F Y GV Y+ C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +GE+GYIRM RN G CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 21/315 (6%)
Query: 48 FESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIK----NYWLGLNEFADLRHEE 103
+E++ + + + Y + E+ R +IF+ L +E N K + +Y LG+N F D+ EE
Sbjct: 22 WENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEE 81
Query: 104 FKEMFLGL--KPDLARR--KDQSHEDFSYKDVVDLPKSVDWRKKGAVTHVKNQGSCGSCW 159
K GL DL + ++ ED V P S DWR +G V+ VKNQGSCGS W
Sbjct: 82 MKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSW 141
Query: 160 AFSTVAAVEGINQIVTGNL--ASLSEQELIDC-DNTYNNGCNGGLMDYAFQYIVSTGGLH 216
AFS+ A+E +I G +S+SEQ+L+DC N GC+GG M+ AF Y+ GG+
Sbjct: 142 AFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNAL--GCSGGWMNDAFTYVAQNGGID 199
Query: 217 KEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQ-PLSVAIEASGRD 275
E YPY M +G C + ++GY + E+ L +A + P++VA +A
Sbjct: 200 SEGAYPYEMADGNCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD-DP 257
Query: 276 FQFYSGGV-YDGHCGT-QLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTG 333
F YSGGV Y+ C T + H V VGYG+ G DY +VKNSWG WG GY ++ RN
Sbjct: 258 FGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNAN 317
Query: 334 KPEGLCGINKMASYP 348
CGI +AS P
Sbjct: 318 N---HCGIAGVASVP 329
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CG+ +AFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDVGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY--DGHCGTQLDHGVAAVGYG-STRGLDY 309
+L+KA+A P+SVAI+A F FY G+Y + L+H + VGYG + Y
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
+VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 215
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 13/222 (5%)
Query: 135 PKSVDWRKKGA-VTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTY 193
P S+DWRKKG V+ VKNQGSCGSCW FST A+E I TG + SL+EQ+L+DC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 194 NN-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
NN GC GGL AF+YI G+ E+ YPY ++ C+ + + + + ++ N
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKF-QPDKAIAFVKDVANITMND 120
Query: 253 EDSLLKALA-NQPLSVAIEASGRDFQFYSGGVYDG----HCGTQLDHGVAAVGYGSTRGL 307
E+++++A+A P+S A E + DF Y G+Y +++H V AVGYG G+
Sbjct: 121 EEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGI 179
Query: 308 DYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
Y IVKNSWGP+WG GY ++R + +CG+ ASYPI
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYPI 217
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 134/221 (60%), Gaps = 15/221 (6%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P +VDWR+KGAVT VK+QG CGSCWAFST+ +EG Q+ L SLSEQ L+ CD T +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD-TID 60
Query: 195 NGCNGGLMDYAFQYIVST--GGLHKEEDYPYIM---EEGTCEMTKGESEVVTINGYHDVP 249
GC GGLMD AF +IV++ G + E YPY+ E+ C+M G I + D+P
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQM-NGHEIGAAITDHVDLP 119
Query: 250 QNSEDSLLKALA-NQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLD 308
Q+ ED++ LA N PL++A++A+ F Y+GG+ QLDHGV VGY
Sbjct: 120 QD-EDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPP 176
Query: 309 YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
Y I+KNSW WGE GYIR+++ T + C +N+ S +
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEKGTNQ----CLMNQAVSSAV 213
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 7/204 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P +VDWR +GAVT VK+QG CGSCWAFS + VE + L +LSEQ L+ CD T +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 195 NGCNGGLMDYAFQYIV--STGGLHKEEDYPYIMEEGTCE--MTKGESEVVTINGYHDVPQ 250
+GC+GGLM+ AF++IV + G ++ E+ YPY EG T G + TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 251 NSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYI 310
+ N P++VA++AS + Y+GGV QLDHGV VGY + + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYW 178
Query: 311 IVKNSWGPKWGEKGYIRMKRNTGK 334
I+KNSW +WGE+GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 111/172 (64%), Gaps = 6/172 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGSCWAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG 302
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 7/204 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P +VDWR +GAVT VK+QG CGSCWAFS + VE + L +LSEQ L+ CD T +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 195 NGCNGGLMDYAFQYIV--STGGLHKEEDYPYIMEEGTCE--MTKGESEVVTINGYHDVPQ 250
+GC+GGLM+ AF++IV + G ++ E+ YPY EG T G + TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 251 NSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYI 310
+ N P++VA++AS + Y+GGV LDHGV VGY + + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYW 178
Query: 311 IVKNSWGPKWGEKGYIRMKRNTGK 334
I+KNSW +WGE+GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 7/204 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P +VDWR +GAVT VK+QG CGSCWAFS + VE + L +L+EQ L+ CD T +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 195 NGCNGGLMDYAFQYIV--STGGLHKEEDYPYIMEEGTCE--MTKGESEVVTINGYHDVPQ 250
+GC+GGLM+ AF++IV + G ++ E+ YPY EG T G + TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 251 NSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYI 310
+ N P++VA++AS + Y+GGV QLDHGV VGY + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 311 IVKNSWGPKWGEKGYIRMKRNTGK 334
I+KNSW +WGE+GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 7/204 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P +VDWR +GAVT VK+QG CGSCWAFS + VE + L +L+EQ L+ CD T +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 195 NGCNGGLMDYAFQYIV--STGGLHKEEDYPYIMEEGTCE--MTKGESEVVTINGYHDVPQ 250
+GC+GGLM+ AF++IV + G ++ E+ YPY EG T G + TI G+ ++PQ
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 251 NSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYI 310
+ N P++VA++AS + Y+GGV QLDHGV VGY + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 311 IVKNSWGPKWGEKGYIRMKRNTGK 334
I+KNSW +WGE+GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 110/172 (63%), Gaps = 6/172 (3%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P+SVDWR+KG VT VKNQG CGS WAFS A+EG TG L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 195 N-GCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253
N GCNGGLMDYAFQY+ GGL EE YPY E +C+ S V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDTGFVDIPKQ-E 119
Query: 254 DSLLKALAN-QPLSVAIEASGRDFQFYSGGVY-DGHCGTQ-LDHGVAAVGYG 302
+L+KA+A P+SVAI+A F FY G+Y + C ++ +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 120/224 (53%), Gaps = 16/224 (7%)
Query: 137 SVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNG 196
+ DWR G VT VK+Q CGSCWAFS+V +VE I L SEQEL+DC + NNG
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDC-SVKNNG 81
Query: 197 CNGGLMDYAFQYIVSTGGLHKEEDYPYIME-EGTCEMTKGESEVVTINGYHDVPQNSEDS 255
C GG + AF ++ GGL ++DYPY+ TC + + +E TI Y +P +
Sbjct: 82 CYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRC-NERYTIKSYVSIPDDKFKE 140
Query: 256 LLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGY----------GSTR 305
L+ L P+S++I AS DF FY GG YDG CG +H V VGY G
Sbjct: 141 ALRYLG--PISISIAAS-DDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRME 197
Query: 306 GLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
Y I+KNSWG WGE GYI ++ + + C I A P+
Sbjct: 198 KFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 125/223 (56%), Gaps = 14/223 (6%)
Query: 137 SVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNG 196
+ DWR VT VK+Q +CGSCWAFS++ +VE I L +LSEQEL+DC + N G
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC-SFKNYG 79
Query: 197 CNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSL 256
CNGGL++ AF+ ++ GG+ + DYPY+ + +E I Y VP N
Sbjct: 80 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEA 139
Query: 257 LKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLD-------- 308
L+ L P+S+++ S DF FY G++DG CG QL+H V VG+G ++
Sbjct: 140 LRFLG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEK 196
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
Y I+KNSWG +WGE+G+I ++ + CG+ A P+
Sbjct: 197 HYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 14/223 (6%)
Query: 137 SVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNG 196
+ DWR VT VK+Q +CGS WAFS++ +VE I L +LSEQEL+DC + N G
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDC-SFKNYG 78
Query: 197 CNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSL 256
CNGGL++ AF+ ++ GG+ + DYPY+ + +E I Y VP N
Sbjct: 79 CNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEA 138
Query: 257 LKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLD-------- 308
L+ L P+S+++ S DF FY G++DG CG QL+H V VG+G ++
Sbjct: 139 LRFLG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEK 195
Query: 309 --YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
Y I+KNSWG +WGE+G+I ++ + CG+ A P+
Sbjct: 196 HYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 120/220 (54%), Gaps = 14/220 (6%)
Query: 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYN 194
P DWR KGAVT VK+QG CGSCWAFS VEG + G L SLSEQEL+DCD +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-D 60
Query: 195 NGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSED 254
C GGL A+ I + GGL E+DY Y +C+ + E V I ++ QN E
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFS-AEKAKVYIQDSVELSQN-EQ 118
Query: 255 SLLKALANQ-PLSVAIEASGRDFQFYSGGV---YDGHCGTQL-DHGVAAVGYGSTRGLDY 309
L LA + P+SVAI A G QFY G+ C L DH V VGYG + +
Sbjct: 119 KLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPF 176
Query: 310 IIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349
+KNSWG WGEKGY + R +G CG+N MAS +
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGSGA----CGVNTMASSAV 212
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 24/291 (8%)
Query: 45 IDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYWLGLNEFADLRHEEF 104
I FE + F K Y + +++ + F ++++++ I N +DL +EF
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAI-------NHLSDLSLDEF 57
Query: 105 KEMFLGLKPDLARRKDQ---SHEDFSYKDVVDLPKSVDWRKKGAVTHVKNQGSCGSCWAF 161
K FL K Q + E + + P +D R+ VT ++ QG CGS WAF
Sbjct: 58 KNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAF 117
Query: 162 STVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDY 221
S VAA E L+EQEL+DC + + GC+G + +YI G+ +E Y
Sbjct: 118 SGVAATESAYLAYRDQSLDLAEQELVDCASQH--GCHGDTIPRGIEYI-QHNGVVQESYY 174
Query: 222 PYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSG 281
Y+ E +C + ++ I+ Y + + + + +ALA ++A+ +D +
Sbjct: 175 RYVAREQSCR--RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRH 232
Query: 282 GVYDGHCGTQLD-------HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGY 325
YDG Q D H V VGY + +G+DY IV+NSW WG+ GY
Sbjct: 233 --YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 132 VDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDN 191
V++P +D R VT ++ QG CGSCWAFS VAA E LSEQEL+DC +
Sbjct: 9 VNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCAS 68
Query: 192 TYNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQN 251
+GC+G + +YI G+ +E YPY+ E C + S+ I+ Y +
Sbjct: 69 --QHGCHGDTIPRGIEYI-QQNGVVEERSYPYVAREQRCR--RPNSQHYGISNYCQIYPP 123
Query: 252 SEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-------HGVAAVGYGST 304
+ +AL ++A+ +D + + YDG Q D H V VGYGST
Sbjct: 124 DVKQIREALTQTHTAIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIVGYGST 181
Query: 305 RGLDYIIVKNSWGPKWGEKGY 325
+G DY IV+NSW WG+ GY
Sbjct: 182 QGDDYWIVRNSWDTTWGDSGY 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 129/252 (51%), Gaps = 44/252 (17%)
Query: 129 KDVVDLPKSVDWRKKGA---VTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLAS--LSE 183
+ ++ LP S DWR V+ V+NQ SCGSC++F+++ +E +I+T N + LS
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 184 QELIDCDNTYNNGCNGGLMDYAFQYIVSTG-----GLHKEEDYPYIMEEGTCEMTKG--- 235
QE++ C Y GC GG F Y+++ GL +E +PY + C+M +
Sbjct: 262 QEVVSCSQ-YAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFR 315
Query: 236 --ESEVVTINGYHDVPQNSEDSLLKA--LANQPLSVAIEASGRDFQFYSGGVYDGHCGTQ 291
SE + G++ ++L+K + + P++VA E DF Y G+Y H G +
Sbjct: 316 YYSSEYHYVGGFYG---GCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIYH-HTGLR 370
Query: 292 --------LDHGVAAVGYG--STRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
+H V VGYG S G+DY IVKNSWG WGE GY R++R T + C I
Sbjct: 371 DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAI 426
Query: 342 NKM--ASYPIKK 351
+ A+ PI K
Sbjct: 427 ESIAVAATPIPK 438
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 130/263 (49%), Gaps = 38/263 (14%)
Query: 115 LARRKDQSHEDFSYKDVVDLPKSVDWRK-KGA--VTHVKNQGSCGSCWAFSTVAAVEGIN 171
+ R K D + ++ LP+S DWR +G V+ V+NQ SCGSC++F+++ +E
Sbjct: 187 ILRPKPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARI 246
Query: 172 QIVTGNLAS--LSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTG-----GLHKEEDYPYI 224
+I+T N + LS QE++ C + Y GC+GG F Y+++ G+ +E +PY
Sbjct: 247 RILTNNSQTPILSPQEVVSC-SPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYT 300
Query: 225 MEEGTCE----MTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYS 280
+ C+ + S G N L+ + + P++VA E DF Y
Sbjct: 301 ATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHYH 359
Query: 281 GGVYDGHCGTQ--------LDHGVAAVGYG--STRGLDYIIVKNSWGPKWGEKGYIRMKR 330
G+Y H G +H V VGYG GLDY IVKNSWG +WGE GY R++R
Sbjct: 360 SGIYH-HTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRR 418
Query: 331 NTGKPEGLCGINK--MASYPIKK 351
T + C I MA+ PI K
Sbjct: 419 GTDE----CAIESIAMAAIPIPK 437
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+ P +D R+ VT ++ QG CGSCWAFS VAA E L+EQEL+DC +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 193 YNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
+ GC+G + +YI G+ +E Y Y+ E +C + ++ I+ Y + +
Sbjct: 69 H--GCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPN 123
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-------HGVAAVGYGSTR 305
+ + +ALA ++A+ +D + YDG Q D H V VGY + +
Sbjct: 124 VNKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 306 GLDYIIVKNSWGPKWGEKGY 325
G+DY IV+NSW WG+ GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 14/200 (7%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+ P +D R+ VT ++ QG CGSCWAFS VAA E L+EQEL+DC +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 193 YNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
+ GC+G + +YI G+ +E Y Y+ E +C + ++ I+ Y + +
Sbjct: 69 H--GCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPN 123
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-------HGVAAVGYGSTR 305
+ + +ALA ++A+ +D + YDG Q D H V VGY + +
Sbjct: 124 ANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 306 GLDYIIVKNSWGPKWGEKGY 325
G+DY IV+NSW WG+ GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 133 DLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT 192
+ P +D R+ VT ++ QG CGS WAFS VAA E L+EQEL+DC +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 193 YNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNS 252
+ GC+G + +YI G+ +E Y Y+ E +C + ++ I+ Y + +
Sbjct: 69 H--GCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSCR--RPNAQRFGISNYCQIYPPN 123
Query: 253 EDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-------HGVAAVGYGSTR 305
+ + +ALA ++A+ +D + YDG Q D H V VGY + +
Sbjct: 124 ANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ 181
Query: 306 GLDYIIVKNSWGPKWGEKGY 325
G+DY IV+NSW WG+ GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 117/250 (46%), Gaps = 34/250 (13%)
Query: 110 GLKPDLARRKDQSHEDFSYKDVVDLPKSVDWRKKGAVTHV---KNQ---GSCGSCWAF-S 162
GL P + HE Y DLPKS DWR V + +NQ CGSCWA S
Sbjct: 15 GLAPLGRTTYPRPHE---YLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHAS 71
Query: 163 TVAAVEGINQIVTGNLAS--LSEQELIDCDNTYNNGCNGG----LMDYAFQYIVSTGGLH 216
T A + IN G S LS Q +IDC N C GG + DYA Q+ + +
Sbjct: 72 TSAMADRINIKRKGAWPSTLLSVQNVIDCGNA--GSCEGGNDLSVWDYAHQHGIPDETCN 129
Query: 217 ----KEEDYPYIMEEGTCEMTKGESEVVTINGY-------HDVPQNSEDSLLKALANQPL 265
K+++ + GTC K E I Y + E + + AN P+
Sbjct: 130 NYQAKDQECDKFNQCGTCNEFK---ECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPI 186
Query: 266 SVAIEASGRDFQFYSGGVYDGHCGTQ-LDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKG 324
S I A+ R Y+GG+Y + T ++H V+ G+G + G +Y IV+NSWG WGE+G
Sbjct: 187 SCGIMATER-LANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERG 245
Query: 325 YIRMKRNTGK 334
++R+ +T K
Sbjct: 246 WLRIVTSTYK 255
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 109/226 (48%), Gaps = 31/226 (13%)
Query: 134 LPKSVDWRKKGAVTH---VKNQ---GSCGSCWAF-STVAAVEGINQIVTGNLAS--LSEQ 184
LPKS DWR V + +NQ CGSCWA ST A + IN G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 185 ELIDCDNTYNNGCNGG----LMDYAFQYIVSTGGLH----KEEDYPYIMEEGTCEMTKGE 236
+IDC N C GG + DYA Q+ + + K+++ + GTC K
Sbjct: 61 NVIDCGNA--GSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFK-- 116
Query: 237 SEVVTINGY-------HDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCG 289
E I Y + E + + AN P+S I A+ R Y+GG+Y +
Sbjct: 117 -ECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER-LANYTGGIYAEYQD 174
Query: 290 TQ-LDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGK 334
T ++H V+ G+G + G +Y IV+NSWG WGE+G++R+ +T K
Sbjct: 175 TTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK 220
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELID 188
LP S D W + + +Q +CGSCWA + +A+ + G +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 189 CDNTYNNGCNGGLMDYAFQYIVSTGGLHKE-EDYPYI-------------------MEEG 228
C + +GCNGG D A+ Y STG + + YP+ +
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 191
Query: 229 TCEMTKGESEVVTIN--GYHDVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYD 285
C+ T + + +N + ED ++ L + P VA + DF Y+ GVY
Sbjct: 192 KCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVYH 250
Query: 286 GHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
G L H V VG+G++ G+ Y + NSW +WG GY ++R + + CGI
Sbjct: 251 HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 303
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELID 188
LP S D W + + +Q +CGSCWA + +A+ + G +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 189 CDNTYNNGCNGGLMDYAFQYIVSTGGLHKE-EDYPYI-------------------MEEG 228
C + +GCNGG D A+ Y STG + + YP+ +
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 190
Query: 229 TCEMTKGESEVVTIN--GYHDVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYD 285
C T + + +N + ED ++ L + P VA + DF Y+ GVY
Sbjct: 191 KCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVYH 249
Query: 286 GHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
G L H V VG+G++ G+ Y + NSW +WG GY ++R + + CGI
Sbjct: 250 HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 302
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELID 188
LP S D W + + +Q +CGSCWA + +A+ + G +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 189 CDNTYNNGCNGGLMDYAFQYIVSTGGLHKE-EDYPYI-------------------MEEG 228
C + +GCNGG D A+ Y STG + + YP+ +
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTP 213
Query: 229 TCEMTKGESEVVTIN--GYHDVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYD 285
C T + + +N + ED ++ L + P VA + DF Y+ GVY
Sbjct: 214 KCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGVYH 272
Query: 286 GHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
G L H V VG+G++ G+ Y + NSW +WG GY ++R + + CGI
Sbjct: 273 HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 325
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 98/240 (40%), Gaps = 44/240 (18%)
Query: 132 VDLPKSVDWRKK----GAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNL--ASLSEQE 185
V++P S D RKK ++ +++Q CGSCWAF V A+ + I +G LS +
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 186 LIDCDNTYNNGCNGGLMDYAFQYIVSTG---GLHKE-----EDYPYIMEEGTCEMTKGES 237
L+ C + GC GG++ A+ Y V G G KE E YP+ E TKG+
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCE---HHTKGKY 117
Query: 238 EVV------------TINGYHDVP--------------QNSEDSLLKALANQPLSVAIEA 271
T + P +N E ++ K + A
Sbjct: 118 PPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFT 177
Query: 272 SGRDFQFYSGGVYDGHCGTQL-DHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
DF Y G+Y G L H + +G+G Y ++ NSW WGE GY R+ R
Sbjct: 178 VYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 44/253 (17%)
Query: 128 YKDVVDLPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASL-- 181
+ + + LP S D W + + +++QGSCGSCWAF V A+ I T S+
Sbjct: 58 FTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEV 117
Query: 182 -SEQELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------G 228
+E L C + +GCNGG A+ + + +GGL++ PY + G
Sbjct: 118 SAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNG 177
Query: 229 TCEMTKGESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAI 269
+ GE + + GY + V + +D + + N P+ A
Sbjct: 178 SRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF 237
Query: 270 EASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRM 328
DF Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++
Sbjct: 238 SVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 296
Query: 329 KRNTGKPEGLCGI 341
R + CGI
Sbjct: 297 LRG----QDHCGI 305
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 44/253 (17%)
Query: 128 YKDVVDLPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG---NLAS 180
+ + ++LP+S D W + +++QGSCGSCWAF V A+ I T N+
Sbjct: 1 FSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEV 60
Query: 181 LSEQELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIME------EG 228
+E L C +GCNGG A+ + + +GG++ PY + G
Sbjct: 61 SAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNG 120
Query: 229 TCEMTKGESEVVTIN-----------------GY--HDVPQNSEDSLLKALANQPLSVAI 269
GE + N GY + V + ++ + + N P+ A
Sbjct: 121 ARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAF 180
Query: 270 EASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRM 328
DF Y GVY G + H + +G+G G+ Y +V NSW WG+ G+ ++
Sbjct: 181 TVF-SDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 239
Query: 329 KRNTGKPEGLCGI 341
R E CGI
Sbjct: 240 LRG----ENHCGI 248
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 132 VDLPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASL---SEQ 184
+ LP S D W + + +++QGSCGSCWAF V A+ I T S+ +E
Sbjct: 1 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 60
Query: 185 ELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------GTCEM 232
L C + +GCNGG A+ + + +GGL++ PY + G+
Sbjct: 61 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 120
Query: 233 TKGESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAIEASG 273
GE + + GY + V + +D + + N P+ A
Sbjct: 121 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY- 179
Query: 274 RDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
DF Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 180 SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 237
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 44/247 (17%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASL---SEQEL 186
LP S D W + + +++QGSCGSCWAF V A+ I T S+ +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 187 IDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------GTCEMTK 234
C + +GCNGG A+ + + +GGL++ PY + G+
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 235 GESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAIEASGRD 275
GE + + GY + V + +D + + N P+ A D
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 180
Query: 276 FQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGK 334
F Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 237
Query: 335 PEGLCGI 341
+ CGI
Sbjct: 238 -QDHCGI 243
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 40/236 (16%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASL---SEQEL 186
LP S D W + + +++QGSCGSCWAF V A+ I T S+ +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 187 IDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------GTCEMTK 234
C + +GCNGG A+ + + +GGL++ PY + G+
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 235 GESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAIEASGRD 275
GE + + GY + V + +D + + N P+ A D
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 179
Query: 276 FQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
F Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 105/257 (40%), Gaps = 44/257 (17%)
Query: 124 EDFSYKDVVDLPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG--- 176
E + + ++LP+S D W + +++QGSCGS WAF V A+ I T
Sbjct: 53 ERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRV 112
Query: 177 NLASLSEQELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIME---- 226
N+ +E L C +GCNGG A+ + + +GG++ PY +
Sbjct: 113 NVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEH 172
Query: 227 --EGTCEMTKGESEVVTIN-----------------GY--HDVPQNSEDSLLKALANQPL 265
G GE + N GY + V + ++ + + N P+
Sbjct: 173 HVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPV 232
Query: 266 SVAIEASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKG 324
A DF Y GVY G + H + +G+G G+ Y +V NSW WG+ G
Sbjct: 233 EGAFTVF-SDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNG 291
Query: 325 YIRMKRNTGKPEGLCGI 341
+ ++ R E CGI
Sbjct: 292 FFKILRG----ENHCGI 304
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 101/247 (40%), Gaps = 44/247 (17%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG---NLASLSEQEL 186
LP+S D W + +++QGSCGSCWAF V A+ I T N+ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 187 IDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIME------EGTCEMTK 234
C +GCNGG A+ + + +GG++ PY + G
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 235 GESEVVTIN-----------------GY--HDVPQNSEDSLLKALANQPLSVAIEASGRD 275
GE + N GY + V + ++ + + N P+ A D
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-SD 179
Query: 276 FQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGK 334
F Y GVY G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 236
Query: 335 PEGLCGI 341
E CGI
Sbjct: 237 -ENHCGI 242
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 128 YKDVVDLPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASL-- 181
+ + + LP S D W + + +++QGSCGS WAF V A+ I T S+
Sbjct: 1 FTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEV 60
Query: 182 -SEQELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------G 228
+E L C + +GCNGG A+ + + +GGL++ PY + G
Sbjct: 61 SAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNG 120
Query: 229 TCEMTKGESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAI 269
GE + + GY + V + +D + + N P+ A
Sbjct: 121 ARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAF 180
Query: 270 EASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRM 328
DF Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++
Sbjct: 181 SVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 239
Query: 329 KRNTGKPEGLCGI 341
R + CGI
Sbjct: 240 LRG----QDHCGI 248
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 27/168 (16%)
Query: 134 LPKSVDWRKKGA---VTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLAS--LSEQELID 188
LP S DWR V+ V+NQ SCGSC++F+++ +E +I+T N + LS QE++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 189 CDNTYNNGCNGGLMDYAFQYIVSTG-----GLHKEEDYPYIMEEGTCEMTKG-----ESE 238
C Y GC GG F Y+++ GL +E +PY + C+M + SE
Sbjct: 61 CSQ-YAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 114
Query: 239 VVTINGYHDVPQNSEDSLLK--ALANQPLSVAIEASGRDFQFYSGGVY 284
+ G++ ++L+K + + P++VA E DF Y G+Y
Sbjct: 115 YHYVGGFYG---GCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIY 158
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.2 bits (139), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 293 DHGVAAVGYG--STRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKM--ASYP 348
+H V VGYG S G+DY IVKNSWG WGE GY R++R T + C I + A+ P
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAIESIAVAATP 65
Query: 349 IKK 351
I K
Sbjct: 66 IPK 68
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 42/237 (17%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLAS--LSEQELI 187
LP+S D W + +++QGSCGSCWAF V A+ I + + +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 188 --------------DCDNTYNNGCNGGLMDYAF--------QYIVSTGGLHKEEDYPYIM 225
+ +N GL+ Y + H P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 226 EEG-------TCE----MTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIEASGR 274
EG TCE + E + + Y V N ++ + + N P+ A
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSY-SVANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 275 DFQFYSGGVYDGHCGTQL-DHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKR 330
DF Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 46 DLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYWLGLNEFADLRHEEFK 105
D F S+ + + K Y + +EK R+ IFK+NL +I N++ +Y L +N F DL +EF+
Sbjct: 23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFR 82
Query: 106 EMFLGLKPD 114
+LG K
Sbjct: 83 RKYLGFKKS 91
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 149 VKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDC-DNTYNNGCNGGLMDYAF- 206
V++QG+C + W F++ +E I + +S + +C + + C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 207 QYIVSTGGLHKEEDYPY------------------IMEEGTCEMTKGESEVVTINGY--- 245
Q I G L E +YPY + + G K E + GY
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 246 -HDVPQNSEDSLLKALANQPLS-----VAIEASGRDFQFYSGGVYDGHCGTQL-DHGVAA 298
+ ++ D+ +K + + ++ I+A +SG CG DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 299 VGYGSTRGLD-----YIIVKNSWGPKWGEKGYIRM 328
VGYG+ + Y IV+NSWGP WG++GY ++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 149 VKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDC-DNTYNNGCNGGLMDYAF- 206
V++QG+C + W F++ +E I + +S + +C + + C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 207 QYIVSTGGLHKEEDYPY------------------IMEEGTCEMTKGESEVVTINGY--- 245
Q I G L E +YPY + + G K E + GY
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 246 -HDVPQNSEDSLLKALANQPLS-----VAIEASGRDFQFYSGGVYDGHCGTQL-DHGVAA 298
+ ++ D+ +K + + ++ I+A +SG CG DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 299 VGYGSTRGLD-----YIIVKNSWGPKWGEKGYIRM 328
VGYG+ + Y IV+NSWGP WG++GY ++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 33/181 (18%)
Query: 182 SEQELIDCDNTYNNGCNGGLMDYAFQYI----VSTGGLHKEE--DYPYIMEE------GT 229
+E L C + +GCNGG A+ + + +GGL++ PY + G+
Sbjct: 7 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 66
Query: 230 CEMTKGESEV-----VTINGY--------------HDVPQNSEDSLLKALANQPLSVAIE 270
GE + + GY + V + +D + + N P+ A
Sbjct: 67 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 126
Query: 271 ASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMK 329
DF Y GVY G + H + +G+G G Y +V NSW WG+ G+ ++
Sbjct: 127 VY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKIL 185
Query: 330 R 330
R
Sbjct: 186 R 186
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 246 HDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGST 304
+ V N ++ + + N P+ A DF Y GVY G + H + +G+G
Sbjct: 103 YSVANNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE 161
Query: 305 RGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
G Y +V NSW WG+ G+ ++ R + CGI
Sbjct: 162 NGTPYWLVGNSWNTDWGDNGFFKILRG----QDHCGI 194
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 246 HDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLD-HGVAAVGYGST 304
+ V N ++ + + N P+ A DF Y GVY G + H + +G+G
Sbjct: 151 YSVANNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE 209
Query: 305 RGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341
G Y +V NSW WG+ G+ ++ R + CGI
Sbjct: 210 NGTPYWLVGNSWNTDWGDNGFFKILRG----QDHCGI 242
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAV 167
LP+S D W + +++QGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAV 167
LP S D W + + +++QGSCGSCWAF V A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 134 LPKSVD----WRKKGAVTHVKNQGSCGSCWAFSTVAAV 167
LP+S D W + +++QGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 309 YIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348
Y +VKNSWG +WG GY++M ++ CGI ASYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 40
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 49 ESWM---SKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIK----NYWLGLNEFADLRH 101
E W+ SKF+K YE+ +E L R I+ ++ I+E NRK + + +G+N ADL
Sbjct: 8 EEWVEYKSKFDKNYEA-EEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 102 EEF 104
EEF
Sbjct: 67 EEF 69
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 142 KKGAVTHVKNQGSCGSCWAFSTVAAVE 168
K+ +T VKNQ G+CW +S+ + +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|2QVT|A Chain A, Structure Of Melampsora Lini Avirulence Protein, Avrl567-D
Length = 150
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 204 YAFQYIVSTGGLHKEEDYPYIM---EEGTCEMTKGESEVVTINGYHDVPQNSE 253
YA IVS GG+H ED P + EG + + VT++G +V ++E
Sbjct: 10 YAVLSIVSLGGIHAMEDVPAELTGVSEGYTRFYRSPTASVTLSGLVNVKWDNE 62
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 38 LTSNDK-LIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYWLGL 93
+TS K +I+ FESW +FE+ D +LE + L DET R+I N+ L L
Sbjct: 77 VTSEAKNVIETFESWGFEFEE-----DLRLEGGHTKRRVLHRTDETGREIFNFLLKL 128
>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
(Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
Length = 157
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 239 VVTINGYHDVPQNSEDSLLKALANQPLSVAI-EASGRDF-----QFYSGGVYD 285
VVT+ GY +P+NSE +L + +VA+ G DF QF++ + D
Sbjct: 68 VVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQD 120
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 248 VPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGL 307
V N E+S+ K N+P ++ +++ Y+GG H + + + A+ + RGL
Sbjct: 221 VVANYEESI-KMPINEPAPGKKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGL 279
Query: 308 DYIIVKNSWGPKWGEK---GYIRMKRNTGKPEGL 338
+++ V +++ + EK I++K N E L
Sbjct: 280 EFLSVPSTYYKQLREKLKTAKIKVKENIDALEEL 313
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 269 IEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRM 328
+ +G+ + +G Y+G C D +A G G+T D N G + GY R
Sbjct: 302 FQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHY---GYCRK 358
Query: 329 KRNT 332
++NT
Sbjct: 359 EQNT 362
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 97/252 (38%), Gaps = 49/252 (19%)
Query: 110 GLKPDLARRKDQSHEDFSYKD----VVDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVA 165
G PD+A +D FSY + LP VD V +QG GSC A + A
Sbjct: 34 GYIPDIADIRD-----FSYTPEKSVIAALPPKVDLTPP---FQVYDQGRIGSCTANALAA 85
Query: 166 AV--EGIN-----QIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKE 218
A+ E I+ + + L + I+ Y++G M ++ G+ E
Sbjct: 86 AIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGA----MIRDGIKVLHKLGVCPE 141
Query: 219 EDYPY---IMEEGTCEMTKGE--SEVVTINGYHDVPQNSEDSLLKALANQPLSV-AIEAS 272
+++PY + T E G S+ + Y D QN + + +A + A A
Sbjct: 142 KEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDA-QNYKITEYSRVAQDIDHLKACLAV 200
Query: 273 GRDFQFYSGGVYDGHCG-----------TQLD-----HGVAAVGYGSTRGLDYIIVKNSW 316
G F F VY+ G T+ D H V VGY + + ++NSW
Sbjct: 201 GSPFVF-GFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDDE--IRHFRIRNSW 257
Query: 317 GPKWGEKGYIRM 328
G GE GY M
Sbjct: 258 GNNVGEDGYFWM 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,805,658
Number of Sequences: 62578
Number of extensions: 482805
Number of successful extensions: 1557
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 144
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)