Query 018649
Match_columns 352
No_of_seqs 277 out of 1876
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00203 cathepsin L protease; 100.0 1.4E-83 3E-88 613.0 36.9 330 1-349 1-339 (348)
2 KOG1542 Cysteine proteinase Ca 100.0 1.3E-82 2.8E-87 580.6 25.9 297 44-350 67-371 (372)
3 PTZ00021 falcipain-2; Provisio 100.0 6.1E-78 1.3E-82 590.2 32.8 305 41-351 162-489 (489)
4 PTZ00200 cysteine proteinase; 100.0 2.5E-77 5.4E-82 584.1 36.3 305 38-351 116-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 2.7E-69 5.9E-74 511.2 30.3 287 52-350 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 8.1E-58 1.8E-62 419.2 23.0 207 134-347 1-239 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 2.9E-57 6.4E-62 414.3 23.4 210 134-349 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 5.2E-57 1.1E-61 404.7 23.2 207 135-348 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 8.5E-57 1.9E-61 410.5 21.8 205 135-346 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 2.5E-55 5.5E-60 395.1 19.4 213 134-349 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 1.4E-53 3.1E-58 426.8 24.2 212 131-349 378-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 4.6E-53 1E-57 419.1 22.9 207 131-346 202-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 3.8E-50 8.2E-55 350.1 18.5 166 134-344 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 8.2E-47 1.8E-51 340.4 20.4 192 137-331 1-212 (223)
15 PTZ00462 Serine-repeat antigen 100.0 3.6E-45 7.7E-50 375.8 22.2 201 146-351 544-782 (1004)
16 KOG1544 Predicted cysteine pro 100.0 7.8E-43 1.7E-47 315.3 6.4 262 77-346 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 9.1E-31 2E-35 242.7 7.2 195 132-332 97-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 1.3E-23 2.8E-28 204.9 13.7 179 147-331 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 4.7E-17 1E-21 115.6 7.5 57 48-104 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 5.4E-16 1.2E-20 151.7 16.9 179 147-331 56-400 (438)
21 smart00848 Inhibitor_I29 Cathe 99.5 1.2E-14 2.7E-19 102.7 5.0 56 48-103 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.7 1E-07 2.2E-12 88.3 10.0 76 252-329 296-400 (444)
23 KOG4128 Bleomycin hydrolases a 97.4 8E-05 1.7E-09 69.3 2.5 75 147-222 63-167 (457)
24 PF13529 Peptidase_C39_2: Pept 97.2 0.0045 9.8E-08 50.7 11.0 58 250-316 86-144 (144)
25 PF05543 Peptidase_C47: Stapho 96.3 0.044 9.5E-07 47.1 9.9 119 150-317 17-145 (175)
26 PF08127 Propeptide_C1: Peptid 95.6 0.0094 2E-07 38.8 2.2 35 76-112 3-37 (41)
27 PF07172 GRP: Glycine rich pro 92.5 0.057 1.2E-06 42.0 1.2 26 1-27 1-26 (95)
28 PF14399 Transpep_BrtH: NlpC/p 90.3 0.76 1.6E-05 43.4 6.6 55 253-314 78-133 (317)
29 COG4990 Uncharacterized protei 88.9 1 2.2E-05 39.0 5.5 51 247-317 117-168 (195)
30 PF09778 Guanylate_cyc_2: Guan 77.7 7.7 0.00017 34.7 6.5 60 251-314 111-180 (212)
31 cd02549 Peptidase_C39A A sub-f 77.1 7.8 0.00017 31.4 6.1 44 256-316 70-114 (141)
32 cd00044 CysPc Calpains, domain 66.8 21 0.00046 33.8 7.3 27 292-318 235-263 (315)
33 PF15144 DUF4576: Domain of un 55.5 17 0.00037 26.9 3.3 25 1-25 1-25 (88)
34 PF10731 Anophelin: Thrombin i 52.3 22 0.00047 24.9 3.2 19 8-26 4-22 (65)
35 PF01640 Peptidase_C10: Peptid 51.3 76 0.0017 27.7 7.6 51 254-327 141-192 (192)
36 PF11873 DUF3393: Domain of un 45.4 24 0.00052 31.4 3.3 18 8-25 2-19 (204)
37 PF11254 DUF3053: Protein of u 39.6 1.2E+02 0.0026 27.4 6.9 67 4-85 1-73 (229)
38 PF12385 Peptidase_C70: Papain 33.7 87 0.0019 26.7 4.7 38 252-304 97-135 (166)
39 TIGR03044 PS_II_psb27 photosys 29.5 78 0.0017 26.2 3.7 18 41-58 65-82 (135)
40 PRK11901 hypothetical protein; 29.1 37 0.00081 32.3 2.0 29 1-29 31-61 (327)
41 smart00230 CysPc Calpain-like 28.5 1.1E+02 0.0023 29.2 5.1 26 292-317 227-254 (318)
42 COG3763 Uncharacterized protei 27.4 1.2E+02 0.0026 22.1 3.9 21 2-22 2-22 (71)
43 PF13333 rve_2: Integrase core 25.0 1.8E+02 0.004 19.3 4.4 39 55-108 13-51 (52)
44 TIGR02608 delta_60_rpt delta-6 22.4 2.7E+02 0.0058 19.2 5.3 35 295-329 13-53 (55)
45 PF11153 DUF2931: Protein of u 22.1 71 0.0015 28.4 2.5 22 7-28 1-22 (216)
46 PF15240 Pro-rich: Proline-ric 21.8 63 0.0014 28.1 1.9 18 12-29 3-20 (179)
47 PF12273 RCR: Chitin synthesis 21.2 61 0.0013 26.4 1.7 6 48-53 36-41 (130)
48 PLN00115 pollen allergen group 21.1 96 0.0021 25.1 2.7 24 294-321 48-73 (118)
49 COG3017 LolB Outer membrane li 20.6 61 0.0013 28.8 1.6 29 1-29 1-30 (206)
50 PF13677 MotB_plug: Membrane M 20.2 3.1E+02 0.0066 19.0 4.9 15 6-20 23-37 (58)
No 1
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.4e-83 Score=612.98 Aligned_cols=330 Identities=35% Similarity=0.656 Sum_probs=275.7
Q ss_pred CCccchhHHHHHHHHHHHHHHhhccccccccCCCCCCCCChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH
Q 018649 1 MALSSQFKTILISFCISFFIRSSFARDFSIVGYSPEDLTSNDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHID 80 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~ 80 (352)
||+||+.+|.|.++|++++..++.+.+.. -...+..+|++||.+|+|.|.+.+|+.+|++||++|+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~ 70 (348)
T PTZ00203 1 MATSRAALCAVAVVCVVLAAACAPARAIY----------VGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMR 70 (348)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccchhcc----------cccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888777666554 33557778999999999999988899999999999999999
Q ss_pred HhcCCCCcEEEEcccCCCCCHHHHHHHHhCCCCccccccCCCCCcccc--cccCCCCCceecCCCCCCCccccCCCcchH
Q 018649 81 ETNRKIKNYWLGLNEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSY--KDVVDLPKSVDWRKKGAVTHVKNQGSCGSC 158 (352)
Q Consensus 81 ~~N~~~~s~~~g~N~FsDlt~~E~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lP~~~Dwr~~g~v~pVkdQg~cgsC 158 (352)
+||+++.+|++|+|+|+|||+|||++++++.................. ....+||++||||++|+|+||||||.||||
T Consensus 71 ~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSC 150 (348)
T PTZ00203 71 EHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSC 150 (348)
T ss_pred HHhccCCCeEEeccccccCCHHHHHHHhcCCCcccccccccccccccccccccccCCCCCcCCcCCCCCCccccCCCccH
Confidence 999887899999999999999999988764211000000000000111 123479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHh--CCCCCCCCCCcccCCC---cccCC
Q 018649 159 WAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVST--GGLHKEEDYPYIMEEG---TCEMT 233 (352)
Q Consensus 159 wAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~ 233 (352)
||||+++++|+++++++++.+.||+|+|+||+. .+.||+||++..|++|+.++ +|+++|++|||.+.++ .|...
T Consensus 151 WAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~-~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~ 229 (348)
T PTZ00203 151 WAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH-VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNS 229 (348)
T ss_pred HHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-CCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCC
Confidence 999999999999999999999999999999985 57899999999999999864 6799999999998765 58643
Q ss_pred CCCcceEEecceEecCCCCHHHHHHHHh-cCCeEEEEEecccccccccCceeeCCCCC-CCCeEEEEEEeeecCCccEEE
Q 018649 234 KGESEVVTINGYHDVPQNSEDSLLKALA-NQPLSVAIEASGRDFQFYSGGVYDGHCGT-QLDHGVAAVGYGSTRGLDYII 311 (352)
Q Consensus 234 ~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~-~~~Hav~iVGyg~~~g~~ywi 311 (352)
.......++.+|..++. +++.|+.+|+ +|||+|+|++. +|++|++|||+. |.. .++|||+|||||+++|++|||
T Consensus 230 ~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWi 305 (348)
T PTZ00203 230 SELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWV 305 (348)
T ss_pred cccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEE
Confidence 22123467888888854 7889999996 58999999985 899999999985 654 579999999999988899999
Q ss_pred EEcCCCCCCCCCceEEEEccCCCCCCcccccccceeee
Q 018649 312 VKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349 (352)
Q Consensus 312 vkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 349 (352)
||||||++|||+|||||+|+. |.|||+++++...
T Consensus 306 ikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 306 IKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSVH 339 (348)
T ss_pred EEcCCCCCcCcCceEEEEcCC----CcccccceEEEEe
Confidence 999999999999999999984 7899997766543
No 2
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-82 Score=580.64 Aligned_cols=297 Identities=47% Similarity=0.811 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCC-cEEEEcccCCCCCHHHHHHHHhCCCCccccccCCC
Q 018649 44 LIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIK-NYWLGLNEFADLRHEEFKEMFLGLKPDLARRKDQS 122 (352)
Q Consensus 44 ~~~~f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~~~-s~~~g~N~FsDlt~~E~~~~~~~~~~~~~~~~~~~ 122 (352)
..+.|..|+.+|+|+|.+.+|..+|+.+|.+|+..+++++..+. |.+.|+|+|||||+|||++++++.+....+. ...
T Consensus 67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~-~~~ 145 (372)
T KOG1542|consen 67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKL-PGD 145 (372)
T ss_pred hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccC-ccc
Confidence 37789999999999999999999999999999999999988755 9999999999999999999999866531111 111
Q ss_pred CCcccccccCCCCCceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhcCCCCCCCCCCch
Q 018649 123 HEDFSYKDVVDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLM 202 (352)
Q Consensus 123 ~~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc~~~~~~gC~GG~~ 202 (352)
....+......||++||||++|.||||||||+||||||||+++++|+++.|++|++++||||+|+||+. .++||+||.+
T Consensus 146 ~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~GGl~ 224 (372)
T KOG1542|consen 146 AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNGGLM 224 (372)
T ss_pred cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCCCCh
Confidence 111122345689999999999999999999999999999999999999999999999999999999995 6899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccCCC-cccCCCCCcceEEecceEecCCCCHHHHHHHH-hcCCeEEEEEeccccccccc
Q 018649 203 DYAFQYIVSTGGLHKEEDYPYIMEEG-TCEMTKGESEVVTINGYHDVPQNSEDSLLKAL-ANQPLSVAIEASGRDFQFYS 280 (352)
Q Consensus 203 ~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~v~~~~~~~~f~~y~ 280 (352)
..|++|+++.+|+..|++|||++..+ .|..... ...+.|.+|..++ .|+++|...| .+|||+|+|++. .+|+|.
T Consensus 225 ~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~-~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~mQ~Yr 300 (372)
T KOG1542|consen 225 DNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKS-KIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PMQFYR 300 (372)
T ss_pred hHHHHHHHHhCCccccccCCccccCCCccccchh-hceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HHHHhc
Confidence 99999988888999999999999987 8998774 5678999999985 4999999998 679999999975 899999
Q ss_pred CceeeC---CCCCC-CCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccceeeee
Q 018649 281 GGVYDG---HCGTQ-LDHGVAAVGYGSTR-GLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPIK 350 (352)
Q Consensus 281 ~Gi~~~---~~~~~-~~Hav~iVGyg~~~-g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 350 (352)
+||..+ .|... ++|+|+|||||... .++|||||||||++|||+||+|+.||. |.|||+++++-+.+
T Consensus 301 gGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 301 GGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAAV 371 (372)
T ss_pred ccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhhc
Confidence 999988 48775 99999999999987 899999999999999999999999995 88999999876654
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.1e-78 Score=590.19 Aligned_cols=305 Identities=40% Similarity=0.720 Sum_probs=256.6
Q ss_pred hhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEcccCCCCCHHHHHHHHhCCCCc-cccc
Q 018649 41 NDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRK-IKNYWLGLNEFADLRHEEFKEMFLGLKPD-LARR 118 (352)
Q Consensus 41 ~~~~~~~f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~-~~s~~~g~N~FsDlt~~E~~~~~~~~~~~-~~~~ 118 (352)
..+....|++|+.+|+|+|.+.+|+.+|+++|++|+++|++||++ +.+|++|+|+|+|||+|||++++++.... ....
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~ 241 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSN 241 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccc
Confidence 344557899999999999999989999999999999999999976 57999999999999999999988764311 1000
Q ss_pred cC---C--CC----CcccccccCCCCCceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhh
Q 018649 119 KD---Q--SH----EDFSYKDVVDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDC 189 (352)
Q Consensus 119 ~~---~--~~----~~~~~~~~~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc 189 (352)
.. . .. ..+.+.....+|++||||+.|.|+||||||.||||||||+++++|++++++++..+.||+|+|+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 242 GKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred cccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 00 0 00 000111111249999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCchHHHHHHHHHhCCCCCCCCCCcccC-CCcccCCCCCcceEEecceEecCCCCHHHHHHHHh-cCCeEE
Q 018649 190 DNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIME-EGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALA-NQPLSV 267 (352)
Q Consensus 190 ~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v 267 (352)
+. .+.||+||++..|+.|+.+++|+++|++|||.+. ++.|..... ...++|.+|..++ +++|+++|+ .|||+|
T Consensus 322 s~-~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~-~~~~~i~~y~~i~---~~~lk~al~~~GPVsv 396 (489)
T PTZ00021 322 SF-KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRC-KEKYKIKSYVSIP---EDKFKEAIRFLGPISV 396 (489)
T ss_pred cc-CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccc-cccceeeeEEEec---HHHHHHHHHhcCCeEE
Confidence 85 5889999999999999988889999999999987 478975543 3457888888874 478999996 589999
Q ss_pred EEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCC----------ccEEEEEcCCCCCCCCCceEEEEccCCCCCC
Q 018649 268 AIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRG----------LDYIIVKNSWGPKWGEKGYIRMKRNTGKPEG 337 (352)
Q Consensus 268 ~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g----------~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~ 337 (352)
++.+. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||+|+.+...|
T Consensus 397 ~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n 475 (489)
T PTZ00021 397 SIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMK 475 (489)
T ss_pred EEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCC
Confidence 99997 689999999999889878899999999997632 4799999999999999999999998654457
Q ss_pred cccccccceeeeec
Q 018649 338 LCGINKMASYPIKK 351 (352)
Q Consensus 338 ~Cgi~~~~~~p~~~ 351 (352)
+|||++.+.||++.
T Consensus 476 ~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 476 TCSLGTEAYVPLIE 489 (489)
T ss_pred CCCCcccceeEecC
Confidence 99999999999863
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.5e-77 Score=584.12 Aligned_cols=305 Identities=36% Similarity=0.662 Sum_probs=256.1
Q ss_pred CCChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEcccCCCCCHHHHHHHHhCCCCcccc
Q 018649 38 LTSNDKLIDLFESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYWLGLNEFADLRHEEFKEMFLGLKPDLAR 117 (352)
Q Consensus 38 ~~~~~~~~~~f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~~~s~~~g~N~FsDlt~~E~~~~~~~~~~~~~~ 117 (352)
...+.++...|++|+.+|+|.|.+..|+..|+.+|++|++.|++||. +.+|++|+|+|+|||+|||.+++++...+...
T Consensus 116 ~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~ 194 (448)
T PTZ00200 116 PKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKS 194 (448)
T ss_pred ccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCcccc
Confidence 34566778899999999999999889999999999999999999996 46899999999999999999887654321100
Q ss_pred cc--C--------CCCCcccc---------ccc----CCCCCceecCCCCCCCccccCC-CcchHHHHHHHHHHHHHHHH
Q 018649 118 RK--D--------QSHEDFSY---------KDV----VDLPKSVDWRKKGAVTHVKNQG-SCGSCWAFSTVAAVEGINQI 173 (352)
Q Consensus 118 ~~--~--------~~~~~~~~---------~~~----~~lP~~~Dwr~~g~v~pVkdQg-~cgsCwAfA~~~~lE~~~~~ 173 (352)
.. . .....+.. ... ..+|++||||+.|.|+|||||| .||||||||+++++|+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i 274 (448)
T PTZ00200 195 NSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKI 274 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHH
Confidence 00 0 00000000 001 1269999999999999999999 99999999999999999999
Q ss_pred HhCCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCCCcccCCCcccCCCCCcceEEecceEecCCCCH
Q 018649 174 VTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSE 253 (352)
Q Consensus 174 ~~~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~ 253 (352)
+++..+.||+|+|+||+. .+.||+||++..|++|++++ |+++|++|||.+..+.|..... ....|.+|..++ ..
T Consensus 275 ~~~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~~--~~~~i~~y~~~~--~~ 348 (448)
T PTZ00200 275 YRDKSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSST--KKVYIDSYLVAK--GK 348 (448)
T ss_pred hcCCCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCCC--CeeEecceEecC--HH
Confidence 999999999999999985 57899999999999999887 9999999999999999976543 346688887653 35
Q ss_pred HHHHHHHhcCCeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeee--cCCccEEEEEcCCCCCCCCCceEEEEcc
Q 018649 254 DSLLKALANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGS--TRGLDYIIVKNSWGPKWGEKGYIRMKRN 331 (352)
Q Consensus 254 ~~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~WGe~Gy~~i~~~ 331 (352)
+.++.++.+|||+|++.+. ++|+.|++|||+++|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+
T Consensus 349 ~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~ 427 (448)
T PTZ00200 349 DVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427 (448)
T ss_pred HHHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeC
Confidence 6677777889999999997 799999999999889877999999999985 3678999999999999999999999997
Q ss_pred CCCCCCcccccccceeeeec
Q 018649 332 TGKPEGLCGINKMASYPIKK 351 (352)
Q Consensus 332 ~~~~~~~Cgi~~~~~~p~~~ 351 (352)
.. +.|.|||++.+.||++.
T Consensus 428 ~~-g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 428 NE-GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CC-CCCcCCccccceeeEEe
Confidence 42 35899999999999874
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-69 Score=511.21 Aligned_cols=287 Identities=49% Similarity=0.850 Sum_probs=248.1
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEcccCCCCCHHHHHHHHhCCCCccccccCCCCCcccccc
Q 018649 52 MSKFEKVYESLDEKLERFEIFKDNLRHIDETNRK-IKNYWLGLNEFADLRHEEFKEMFLGLKPDLARRKDQSHEDFSYKD 130 (352)
Q Consensus 52 ~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~-~~s~~~g~N~FsDlt~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (352)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.. ..+|++|+|+|+|++.+|++....+..+.... .........
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~----~~~~~~~~~ 105 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK----RDKFTEKLD 105 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc----ccccccccc
Confidence 6667777776788899999999999999999997 89999999999999999999988776543220 000111223
Q ss_pred cCCCCCceecCCCC-CCCccccCCCcchHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHhhcCCCCCCCCCCchHHHHHH
Q 018649 131 VVDLPKSVDWRKKG-AVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELIDCDNTYNNGCNGGLMDYAFQY 208 (352)
Q Consensus 131 ~~~lP~~~Dwr~~g-~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~-~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~ 208 (352)
..++|++||||+++ .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+...+.||+||.+..|++|
T Consensus 106 ~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~y 185 (325)
T KOG1543|consen 106 GDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFKY 185 (325)
T ss_pred hhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHHH
Confidence 56899999999996 56669999999999999999999999999999 89999999999999756889999999999999
Q ss_pred HHHhCCCCC-CCCCCcccCCCcccCCCCCcceEEecceEecCCCCHHHHHHHHhc-CCeEEEEEecccccccccCceeeC
Q 018649 209 IVSTGGLHK-EEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVYDG 286 (352)
Q Consensus 209 ~~~~~Gi~~-e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~~ 286 (352)
+.++ |+++ +++|||.+..+.|..... .....+.++..++.. +++|+.+|++ |||+|+|++. ++|++|++|||.+
T Consensus 186 i~~~-G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy~~ 261 (325)
T KOG1543|consen 186 IKKN-GGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVYAE 261 (325)
T ss_pred HHHh-CCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeeh-hhhhhccCceEeC
Confidence 9999 5555 999999999999998775 456778888888654 9999999965 7999999999 5999999999999
Q ss_pred CCCC--CCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCceEEEEccCCCCCCccccccccee-eee
Q 018649 287 HCGT--QLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASY-PIK 350 (352)
Q Consensus 287 ~~~~--~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~-p~~ 350 (352)
++.+ .++|||+|||||..++.+|||||||||++|||+|||||.|++ +.|+|+..+.| |+.
T Consensus 262 ~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~----~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 262 EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGV----NKCGIASEASYGPIK 324 (325)
T ss_pred CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCC----CchhhhcccccCCCC
Confidence 8555 599999999999965689999999999999999999999996 67999999998 753
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=8.1e-58 Score=419.24 Aligned_cols=207 Identities=38% Similarity=0.738 Sum_probs=178.4
Q ss_pred CCCceecCCCC----CCCccccCCCcchHHHHHHHHHHHHHHHHHhCC------CCCCCHHHHHhhcCCCCCCCCCCchH
Q 018649 134 LPKSVDWRKKG----AVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGN------LASLSEQELIDCDNTYNNGCNGGLMD 203 (352)
Q Consensus 134 lP~~~Dwr~~g----~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~------~~~lS~q~l~dc~~~~~~gC~GG~~~ 203 (352)
||++||||+.+ +|+||||||.||||||||++++||+++++++++ .+.||+|+|+||+. .++||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999988 999999999999999999999999999998876 68999999999985 57899999999
Q ss_pred HHHHHHHHhCCCCCCCCCCccc-CCCcccCCCCCcceEEecceEec----CCCCHHHHHHHHh-cCCeEEEEEecccccc
Q 018649 204 YAFQYIVSTGGLHKEEDYPYIM-EEGTCEMTKGESEVVTINGYHDV----PQNSEDSLLKALA-NQPLSVAIEASGRDFQ 277 (352)
Q Consensus 204 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~~~~v----~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~ 277 (352)
.+++|++++ |+++|++|||.. ..+.|.........+++..|..+ ...++++||++|. +|||+++|.+. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999999888 999999999998 67789754411223344444433 1357899999995 58999999998 7999
Q ss_pred cccCceeeCC-----CCC---------CCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccc
Q 018649 278 FYSGGVYDGH-----CGT---------QLDHGVAAVGYGSTR--GLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGI 341 (352)
Q Consensus 278 ~y~~Gi~~~~-----~~~---------~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi 341 (352)
+|++|||+.. |.. .++|||+|||||++. |.+|||||||||++|||+|||||+|+. |.|||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cgi 233 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECGI 233 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccCc
Confidence 9999999875 532 479999999999986 899999999999999999999999984 78999
Q ss_pred ccccee
Q 018649 342 NKMASY 347 (352)
Q Consensus 342 ~~~~~~ 347 (352)
++.+.+
T Consensus 234 ~~~~~~ 239 (243)
T cd02621 234 ESQAVF 239 (243)
T ss_pred ccceEe
Confidence 998865
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=2.9e-57 Score=414.27 Aligned_cols=210 Identities=30% Similarity=0.615 Sum_probs=180.7
Q ss_pred CCCceecCCCC---CCCccccCC---CcchHHHHHHHHHHHHHHHHHhCC---CCCCCHHHHHhhcCCCCCCCCCCchHH
Q 018649 134 LPKSVDWRKKG---AVTHVKNQG---SCGSCWAFSTVAAVEGINQIVTGN---LASLSEQELIDCDNTYNNGCNGGLMDY 204 (352)
Q Consensus 134 lP~~~Dwr~~g---~v~pVkdQg---~cgsCwAfA~~~~lE~~~~~~~~~---~~~lS~q~l~dc~~~~~~gC~GG~~~~ 204 (352)
||++||||+.+ +|+|||||| .||||||||++++||+++.++++. .+.||+|+|+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 79999999987 999999998 899999999999999999998753 57899999999985 78999999999
Q ss_pred HHHHHHHhCCCCCCCCCCcccCCCcccCCC--------------CCcceEEecceEecCCCCHHHHHHHH-hcCCeEEEE
Q 018649 205 AFQYIVSTGGLHKEEDYPYIMEEGTCEMTK--------------GESEVVTINGYHDVPQNSEDSLLKAL-ANQPLSVAI 269 (352)
Q Consensus 205 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~v~~ 269 (352)
+++|++++ |+++|++|||......|.... .....+++++|..++ ++++||++| .+|||+|+|
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999988 999999999998776665311 012245677776663 578899998 568999999
Q ss_pred EecccccccccCceeeCC-CCCCCCeEEEEEEeeecC-CccEEEEEcCCCCCCCCCceEEEEccC-CCCCCcccccccce
Q 018649 270 EASGRDFQFYSGGVYDGH-CGTQLDHGVAAVGYGSTR-GLDYIIVKNSWGPKWGEKGYIRMKRNT-GKPEGLCGINKMAS 346 (352)
Q Consensus 270 ~~~~~~f~~y~~Gi~~~~-~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WGe~Gy~~i~~~~-~~~~~~Cgi~~~~~ 346 (352)
.+. ++|+.|++|||+.. |...++|||+|||||+++ |++|||||||||++|||+|||||+|+. .+..|+|||++.+.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 998 59999999999885 445689999999999886 899999999999999999999999995 22247899999999
Q ss_pred eee
Q 018649 347 YPI 349 (352)
Q Consensus 347 ~p~ 349 (352)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=5.2e-57 Score=404.68 Aligned_cols=207 Identities=60% Similarity=1.091 Sum_probs=188.2
Q ss_pred CCceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCC
Q 018649 135 PKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGG 214 (352)
Q Consensus 135 P~~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~G 214 (352)
|++||||+.+.++||+|||.||+|||||++++||++++++++....||+|+|++|....+.+|.||.+..+++++++. |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 889999999999999999999999999999999999999999889999999999986447899999999999998877 9
Q ss_pred CCCCCCCCcccCCCcccCCCCCcceEEecceEecCCCCHHHHHHHHhc-CCeEEEEEecccccccccCceeeCCCC--CC
Q 018649 215 LHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVYDGHCG--TQ 291 (352)
Q Consensus 215 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~~~~~--~~ 291 (352)
+++|++|||......|..... ....+|.+|..++..++++||++|.+ |||++++.+. ++|+.|++|||..++. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~~-~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNSS-KVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCCCC-cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 999999999988888986653 45688999999877778999999965 7999999997 7999999999988644 46
Q ss_pred CCeEEEEEEeeecCCccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccceee
Q 018649 292 LDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYP 348 (352)
Q Consensus 292 ~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p 348 (352)
++|||+|||||++.+.+|||||||||++||++|||||+++. |.|||+..+.||
T Consensus 158 ~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 79999999999998899999999999999999999999984 789999888876
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=8.5e-57 Score=410.47 Aligned_cols=205 Identities=35% Similarity=0.692 Sum_probs=173.7
Q ss_pred CCceecCCC--CCC--CccccCCCcchHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHhhcCCCCCCCCCCchHHHHHH
Q 018649 135 PKSVDWRKK--GAV--THVKNQGSCGSCWAFSTVAAVEGINQIVTG--NLASLSEQELIDCDNTYNNGCNGGLMDYAFQY 208 (352)
Q Consensus 135 P~~~Dwr~~--g~v--~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~--~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~ 208 (352)
|++||||+. +++ +||+|||.||||||||++++||+++.++++ +.+.||+|+|+||+...+.||+||++..+++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999986 454 599999999999999999999999999887 77899999999998644789999999999999
Q ss_pred HHHhCCCCCCCCCCcccCCCc------------------ccCCCC---CcceEEecceEecCCCCHHHHHHHHh-cCCeE
Q 018649 209 IVSTGGLHKEEDYPYIMEEGT------------------CEMTKG---ESEVVTINGYHDVPQNSEDSLLKALA-NQPLS 266 (352)
Q Consensus 209 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~ 266 (352)
++++ |+++|++|||...... |..... .....++..+..+. .++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9988 9999999999876543 332111 11123455555553 47889999995 68999
Q ss_pred EEEEecccccccccCceeeCCCCC-CCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccc
Q 018649 267 VAIEASGRDFQFYSGGVYDGHCGT-QLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMA 345 (352)
Q Consensus 267 v~~~~~~~~f~~y~~Gi~~~~~~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~ 345 (352)
++|.+. ++|+.|++|||+..+.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.+
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~~ 233 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESEV 233 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccce
Confidence 999996 79999999999876554 468999999999988999999999999999999999999984 789999876
Q ss_pred e
Q 018649 346 S 346 (352)
Q Consensus 346 ~ 346 (352)
+
T Consensus 234 ~ 234 (236)
T cd02620 234 V 234 (236)
T ss_pred e
Confidence 5
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=2.5e-55 Score=395.11 Aligned_cols=213 Identities=48% Similarity=0.875 Sum_probs=183.2
Q ss_pred CCCceecCCC-CCCCccccCCCcchHHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHH
Q 018649 134 LPKSVDWRKK-GAVTHVKNQGSCGSCWAFSTVAAVEGINQIVT-GNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVS 211 (352)
Q Consensus 134 lP~~~Dwr~~-g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~-~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~ 211 (352)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...+.||+|+|++|....+.+|+||++..+++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 688999999999999634679999999999999999
Q ss_pred hCCCCCCCCCCcccCC-CcccCCCCCcceEEecceEecCCCCHHHHHHHHhc-CCeEEEEEecccccccccCceeeCC-C
Q 018649 212 TGGLHKEEDYPYIMEE-GTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVYDGH-C 288 (352)
Q Consensus 212 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~~~-~ 288 (352)
..|+++|++|||.... ..|..........++..|..+...++++||++|.+ |||++++.+..++|+.|++|||..+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 3499999999999877 67886643222468888988877789999999965 8999999999446999999999985 5
Q ss_pred CC-CCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccceeee
Q 018649 289 GT-QLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349 (352)
Q Consensus 289 ~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 349 (352)
.. .++|||+|||||++.+++|||||||||++||++||+||+|+.+ ++|||++.++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 53 6899999999999999999999999999999999999999953 5999999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.4e-53 Score=426.75 Aligned_cols=212 Identities=30% Similarity=0.577 Sum_probs=176.4
Q ss_pred cCCCCCceecCCC----CCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCC----------CCCCHHHHHhhcCCCCCC
Q 018649 131 VVDLPKSVDWRKK----GAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNL----------ASLSEQELIDCDNTYNNG 196 (352)
Q Consensus 131 ~~~lP~~~Dwr~~----g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~----------~~lS~q~l~dc~~~~~~g 196 (352)
..+||++||||+. +.++||+|||.||||||||++++||++++|++++. ..||+|+|+||+. .++|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999984 67999999999999999999999999999986431 2799999999985 5889
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCCCcccCCCcccCCCCC--------------------------------------cc
Q 018649 197 CNGGLMDYAFQYIVSTGGLHKEEDYPYIMEEGTCEMTKGE--------------------------------------SE 238 (352)
Q Consensus 197 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~ 238 (352)
|+||++..|++|++++ ||++|++|||.+..+.|...... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999888 99999999999887788642110 01
Q ss_pred eEEecceEecC-------CCCHHHHHHHHh-cCCeEEEEEecccccccccCceeeCC-------CCC-------------
Q 018649 239 VVTINGYHDVP-------QNSEDSLLKALA-NQPLSVAIEASGRDFQFYSGGVYDGH-------CGT------------- 290 (352)
Q Consensus 239 ~~~i~~~~~v~-------~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~-------~~~------------- 290 (352)
++.++.|..+. ..++++|+++|. +|||+|+|++. ++|++|++|||+.+ |..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 22344444442 246889999995 68999999997 68999999999852 531
Q ss_pred --CCCeEEEEEEeeec--CCc--cEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccceeee
Q 018649 291 --QLDHGVAAVGYGST--RGL--DYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASYPI 349 (352)
Q Consensus 291 --~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 349 (352)
.++|||+|||||.+ +|. +|||||||||++||++|||||+|+. |.|||++.++|+.
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~ 675 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIE 675 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEe
Confidence 36999999999975 453 7999999999999999999999995 7899999998865
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.6e-53 Score=419.09 Aligned_cols=207 Identities=21% Similarity=0.470 Sum_probs=174.7
Q ss_pred cCCCCCceecCCCC---CCCccccCCC---cchHHHHHHHHHHHHHHHHHhC------CCCCCCHHHHHhhcCCCCCCCC
Q 018649 131 VVDLPKSVDWRKKG---AVTHVKNQGS---CGSCWAFSTVAAVEGINQIVTG------NLASLSEQELIDCDNTYNNGCN 198 (352)
Q Consensus 131 ~~~lP~~~Dwr~~g---~v~pVkdQg~---cgsCwAfA~~~~lE~~~~~~~~------~~~~lS~q~l~dc~~~~~~gC~ 198 (352)
..+||++||||+.| +|+||||||. ||||||||++++||++++++++ ..+.||+|+|+||+. .++||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 35799999999987 7999999999 9999999999999999999873 468899999999985 578999
Q ss_pred CCchHHHHHHHHHhCCCCCCCCC--CcccCCC---cccCCCCCcceE------EecceEecCCCCHHHHHHHHh-cCCeE
Q 018649 199 GGLMDYAFQYIVSTGGLHKEEDY--PYIMEEG---TCEMTKGESEVV------TINGYHDVPQNSEDSLLKALA-NQPLS 266 (352)
Q Consensus 199 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~------~i~~~~~v~~~~~~~i~~~l~-~gPV~ 266 (352)
||++..|++|++++ |+++|++| ||.+.++ .|..... ...+ .+.+|..+. .++++|+.+|. +|||+
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVs 357 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVP 357 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeE
Confidence 99999999999888 99999999 9987655 4875432 2222 344454443 47888999995 68999
Q ss_pred EEEEecccccccccCceeeCC---------C-----------CCCCCeEEEEEEeeec-CCccEEEEEcCCCC--CCCCC
Q 018649 267 VAIEASGRDFQFYSGGVYDGH---------C-----------GTQLDHGVAAVGYGST-RGLDYIIVKNSWGP--KWGEK 323 (352)
Q Consensus 267 v~~~~~~~~f~~y~~Gi~~~~---------~-----------~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~--~WGe~ 323 (352)
|+|++. .+|+.|++|||.+. | ...++|||+|||||.+ +|.+|||||||||+ +|||+
T Consensus 358 VaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 358 ASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccC
Confidence 999998 68999999998621 1 1247999999999974 78899999999999 99999
Q ss_pred ceEEEEccCCCCCCcccccccce
Q 018649 324 GYIRMKRNTGKPEGLCGINKMAS 346 (352)
Q Consensus 324 Gy~~i~~~~~~~~~~Cgi~~~~~ 346 (352)
|||||+||. |+|||++.++
T Consensus 437 GYfRI~RG~----N~CGIes~~v 455 (548)
T PTZ00364 437 GTRKIARGV----NAYNIESEVV 455 (548)
T ss_pred CeEEEEcCC----Ccccccceee
Confidence 999999995 7899999877
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.8e-50 Score=350.10 Aligned_cols=166 Identities=62% Similarity=1.120 Sum_probs=148.4
Q ss_pred CCCceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhC
Q 018649 134 LPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTG 213 (352)
Q Consensus 134 lP~~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~ 213 (352)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|....+.||+||.+..|++|+++++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999864466999999999999998876
Q ss_pred CCCCCCCCCcccCCCcccCCCCCcceEEecceEecCCCCHHHHHHHHhcCCeEEEEEecccccccccCceeeCC-CCCC-
Q 018649 214 GLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALANQPLSVAIEASGRDFQFYSGGVYDGH-CGTQ- 291 (352)
Q Consensus 214 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~-~~~~- 291 (352)
|+++|++|||.. ++.+.+. +|+.|++|||+.+ |...
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCc
Confidence 899999999975 4445444 6999999999884 7653
Q ss_pred CCeEEEEEEeeec-CCccEEEEEcCCCCCCCCCceEEEEccCCCCCCccccccc
Q 018649 292 LDHGVAAVGYGST-RGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKM 344 (352)
Q Consensus 292 ~~Hav~iVGyg~~-~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~ 344 (352)
++|+|+|||||.+ +|++|||||||||++|||+|||||.|+. .|.|||+..
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~---~~~c~i~~~ 169 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK---NNECGIEAS 169 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC---CCccCceee
Confidence 7999999999987 8889999999999999999999999984 268999644
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=8.2e-47 Score=340.44 Aligned_cols=192 Identities=36% Similarity=0.551 Sum_probs=166.1
Q ss_pred ceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHhhcCCC----CCCCCCCchHHHHH-HH
Q 018649 137 SVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTG--NLASLSEQELIDCDNTY----NNGCNGGLMDYAFQ-YI 209 (352)
Q Consensus 137 ~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~--~~~~lS~q~l~dc~~~~----~~gC~GG~~~~a~~-~~ 209 (352)
.+|||+.+ ++||+|||.||+|||||+++++|+++++++. ..++||+|+|++|.... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 78999999999998643 37999999999998 77
Q ss_pred HHhCCCCCCCCCCcccCCCcccCC---CCCcceEEecceEecCCCCHHHHHHHHhc-CCeEEEEEecccccccccCceee
Q 018649 210 VSTGGLHKEEDYPYIMEEGTCEMT---KGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVYD 285 (352)
Q Consensus 210 ~~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~ 285 (352)
+.+ |+++|++|||......|... .......++..|..+...++++||++|.+ |||++++.+. +.|..|++|++.
T Consensus 80 ~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 ALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred HHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 776 99999999999887766532 12234578889988877778999999965 7999999998 789999999863
Q ss_pred -----C-CCC-CCCCeEEEEEEeeecC--CccEEEEEcCCCCCCCCCceEEEEcc
Q 018649 286 -----G-HCG-TQLDHGVAAVGYGSTR--GLDYIIVKNSWGPKWGEKGYIRMKRN 331 (352)
Q Consensus 286 -----~-~~~-~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WGe~Gy~~i~~~ 331 (352)
. .+. ..++|||+|||||++. +++|||||||||++||++||+||+++
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehh
Confidence 2 222 3579999999999986 88999999999999999999999998
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=375.78 Aligned_cols=201 Identities=24% Similarity=0.432 Sum_probs=161.3
Q ss_pred CCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhcCC-CCCCCCCCc-hHHHHHHHHHhCCCCCCCCCCc
Q 018649 146 VTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELIDCDNT-YNNGCNGGL-MDYAFQYIVSTGGLHKEEDYPY 223 (352)
Q Consensus 146 v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~dc~~~-~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY 223 (352)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+.. .+.||.||+ +..++.|+++++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999853 468999997 5556699988867899999999
Q ss_pred cc--CCCcccCCCC-----------------CcceEEecceEecCCC----C----HHHHHHHHhc-CCeEEEEEecccc
Q 018649 224 IM--EEGTCEMTKG-----------------ESEVVTINGYHDVPQN----S----EDSLLKALAN-QPLSVAIEASGRD 275 (352)
Q Consensus 224 ~~--~~~~C~~~~~-----------------~~~~~~i~~~~~v~~~----~----~~~i~~~l~~-gPV~v~~~~~~~~ 275 (352)
.. ..+.|+.... ....+.+.+|..+... + ++.|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567874321 0112344566655331 1 3688999965 8999999985 6
Q ss_pred ccccc-CceeeC-CCCC-CCCeEEEEEEeeec-----CCccEEEEEcCCCCCCCCCceEEEEccCCCCCCccccccccee
Q 018649 276 FQFYS-GGVYDG-HCGT-QLDHGVAAVGYGST-----RGLDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMASY 347 (352)
Q Consensus 276 f~~y~-~Gi~~~-~~~~-~~~Hav~iVGyg~~-----~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~ 347 (352)
|+.|. +|||.. .|+. .++|||+|||||.+ .|++|||||||||+.|||+|||||.|+. .+.|||.....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchheee
Confidence 88884 898654 5874 57999999999974 2578999999999999999999999842 488999888888
Q ss_pred eeec
Q 018649 348 PIKK 351 (352)
Q Consensus 348 p~~~ 351 (352)
|+++
T Consensus 779 ~~fn 782 (1004)
T PTZ00462 779 VIFN 782 (1004)
T ss_pred eeEe
Confidence 8764
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=7.8e-43 Score=315.25 Aligned_cols=262 Identities=27% Similarity=0.500 Sum_probs=199.9
Q ss_pred HHHHHhcCCCCcEEEEcc-cCCCCCHHHHHHHHhCCCCccc-cccCCCCCcccccccCCCCCceecCCC--CCCCccccC
Q 018649 77 RHIDETNRKIKNYWLGLN-EFADLRHEEFKEMFLGLKPDLA-RRKDQSHEDFSYKDVVDLPKSVDWRKK--GAVTHVKNQ 152 (352)
Q Consensus 77 ~~I~~~N~~~~s~~~g~N-~FsDlt~~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~pVkdQ 152 (352)
++|++.|..+.+|+.+.- +|-.||.++=.+.-+|..++.. -..+..... ......+||+.||-|++ +++.||.||
T Consensus 151 d~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~-~l~p~~~LPE~F~As~KWp~liH~plDQ 229 (470)
T KOG1544|consen 151 DMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYT-VLNPGEVLPEAFEASEKWPNLIHEPLDQ 229 (470)
T ss_pred HHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhh-ccCcccccchhhhhhhcCCccccCcccc
Confidence 478999988889988864 8999998875444444332211 111111000 11123689999998876 789999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhCC--CCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCCCcccCC---
Q 018649 153 GSCGSCWAFSTVAAVEGINQIVTGN--LASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDYPYIMEE--- 227 (352)
Q Consensus 153 g~cgsCwAfA~~~~lE~~~~~~~~~--~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--- 227 (352)
|+|++.|||+++++...+++|.+.. ...||+|+|++|.....+||+||....|+-|+.+. |++...||||...+
T Consensus 230 gnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~ 308 (470)
T KOG1544|consen 230 GNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAGP 308 (470)
T ss_pred CCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCCC
Confidence 9999999999999999999887643 37899999999987678899999999999999888 99999999997532
Q ss_pred -CcccC------------------CCCCc-ceEEecceEecCCCCHHHHHHHH-hcCCeEEEEEecccccccccCceeeC
Q 018649 228 -GTCEM------------------TKGES-EVVTINGYHDVPQNSEDSLLKAL-ANQPLSVAIEASGRDFQFYSGGVYDG 286 (352)
Q Consensus 228 -~~C~~------------------~~~~~-~~~~i~~~~~v~~~~~~~i~~~l-~~gPV~v~~~~~~~~f~~y~~Gi~~~ 286 (352)
+.|.. ...+. ..++.+.=+.| ..++++|+++| .+|||-+.|.|- ++|..|++|||.+
T Consensus 309 ~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrV-SSnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY~H 386 (470)
T KOG1544|consen 309 APPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRV-SSNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIYSH 386 (470)
T ss_pred CCCceeeccccCcccccccCcCCCcccccCceeeecCCeec-cCCHHHHHHHHHhCCChhhhhhhh-hhhhhhccceeec
Confidence 23432 21111 23344433344 45788888887 789999999887 9999999999987
Q ss_pred CCCC---------CCCeEEEEEEeeecC---C--ccEEEEEcCCCCCCCCCceEEEEccCCCCCCcccccccce
Q 018649 287 HCGT---------QLDHGVAAVGYGSTR---G--LDYIIVKNSWGPKWGEKGYIRMKRNTGKPEGLCGINKMAS 346 (352)
Q Consensus 287 ~~~~---------~~~Hav~iVGyg~~~---g--~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~ 346 (352)
...+ .+.|+|.|.|||++. | .+|||..||||+.|||+|||||-||+ |.|.|+++.+
T Consensus 387 ~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv----NecdIEsfvI 456 (470)
T KOG1544|consen 387 TPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV----NECDIESFVI 456 (470)
T ss_pred cccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc----cchhhhHhhh
Confidence 4221 468999999999873 3 57999999999999999999999997 7899998754
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-31 Score=242.68 Aligned_cols=195 Identities=27% Similarity=0.419 Sum_probs=132.9
Q ss_pred CCCCCceecCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHh-----hcCCCCCC-CCCCchHHH
Q 018649 132 VDLPKSVDWRKKGAVTHVKNQGSCGSCWAFSTVAAVEGINQIVTGNLASLSEQELID-----CDNTYNNG-CNGGLMDYA 205 (352)
Q Consensus 132 ~~lP~~~Dwr~~g~v~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~~~~~lS~q~l~d-----c~~~~~~g-C~GG~~~~a 205 (352)
..+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ...+|+..+.. |......+ -+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 35899999999999999999999999999999999999876433 34455554433 22211222 247788888
Q ss_pred HHHHHHhCCCCCCCCCCcccCCCcccCCCCCcceEEecceEecCC----CCHHHHHHHHh-cCCeEEE--EEeccccccc
Q 018649 206 FQYIVSTGGLHKEEDYPYIMEEGTCEMTKGESEVVTINGYHDVPQ----NSEDSLLKALA-NQPLSVA--IEASGRDFQF 278 (352)
Q Consensus 206 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~----~~~~~i~~~l~-~gPV~v~--~~~~~~~f~~ 278 (352)
..|+.+..|.+.|.+-||....-.|....+. ..++..-..++. -+...|+.++. .|-+... +++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~--~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPV--TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCch--hhccccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 8888888899999999998776666543321 112222222211 12334666663 3544433 4443 2322
Q ss_pred ccCceeeCCCCCCCCeEEEEEEeeec----------CCccEEEEEcCCCCCCCCCceEEEEccC
Q 018649 279 YSGGVYDGHCGTQLDHGVAAVGYGST----------RGLDYIIVKNSWGPKWGEKGYIRMKRNT 332 (352)
Q Consensus 279 y~~Gi~~~~~~~~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WGe~Gy~~i~~~~ 332 (352)
..-+.|........+|||+||||+|. .|.+.||||||||++||++|||||++..
T Consensus 251 ~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 251 ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 23344444344678999999999987 3567999999999999999999999974
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.90 E-value=1.3e-23 Score=204.86 Aligned_cols=179 Identities=24% Similarity=0.321 Sum_probs=127.6
Q ss_pred CccccCCCcchHHHHHHHHHHHHHHHHH-hCCCCCCCHHHHHh----------------hcC-C----------CCCCCC
Q 018649 147 THVKNQGSCGSCWAFSTVAAVEGINQIV-TGNLASLSEQELID----------------CDN-T----------YNNGCN 198 (352)
Q Consensus 147 ~pVkdQg~cgsCwAfA~~~~lE~~~~~~-~~~~~~lS~q~l~d----------------c~~-~----------~~~gC~ 198 (352)
.||+||+.-|.||.||+...|++.+..+ ..+.+.||+.+++. +.. + .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999988774 44579999988754 210 0 244578
Q ss_pred CCchHHHHHHHHHhCCCCCCCCCCcccC--C-------------------------C----------------------c
Q 018649 199 GGLMDYAFQYIVSTGGLHKEEDYPYIME--E-------------------------G----------------------T 229 (352)
Q Consensus 199 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~--~-------------------------~----------------------~ 229 (352)
||....++..+.+. |+++.+.||-+.. . + .
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887 9999999984310 0 0 0
Q ss_pred ccCCCC-------------------------------------------C---cc---eEE-----------ecceEecC
Q 018649 230 CEMTKG-------------------------------------------E---SE---VVT-----------INGYHDVP 249 (352)
Q Consensus 230 C~~~~~-------------------------------------------~---~~---~~~-----------i~~~~~v~ 249 (352)
|--.++ + .+ .+. ...|.++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nv- 292 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNV- 292 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEec-
Confidence 000000 0 00 000 0011222
Q ss_pred CCCHHHHH----HHHhcC-CeEEEEEecccccccccCceeeCC---------------------C-CCCCCeEEEEEEee
Q 018649 250 QNSEDSLL----KALANQ-PLSVAIEASGRDFQFYSGGVYDGH---------------------C-GTQLDHGVAAVGYG 302 (352)
Q Consensus 250 ~~~~~~i~----~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~---------------------~-~~~~~Hav~iVGyg 302 (352)
..+.++ ++|..| ||.+++++. .|..|++||++.. | .+..+|||+|||||
T Consensus 293 --p~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 293 --PMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 244454 566666 999999997 5679999999653 1 23468999999999
Q ss_pred ec-CCc-cEEEEEcCCCCCCCCCceEEEEcc
Q 018649 303 ST-RGL-DYIIVKNSWGPKWGEKGYIRMKRN 331 (352)
Q Consensus 303 ~~-~g~-~ywivkNSWG~~WGe~Gy~~i~~~ 331 (352)
.+ +|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 86 475 699999999999999999999875
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.70 E-value=4.7e-17 Score=115.64 Aligned_cols=57 Identities=49% Similarity=0.851 Sum_probs=50.9
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhc-CCCCcEEEEcccCCCCCHHHH
Q 018649 48 FESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETN-RKIKNYWLGLNEFADLRHEEF 104 (352)
Q Consensus 48 f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N-~~~~s~~~g~N~FsDlt~~E~ 104 (352)
|++|+++|+|.|.+..|+..|+.+|++|++.|++|| ....+|++|+|+|+|||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999999 568899999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.69 E-value=5.4e-16 Score=151.66 Aligned_cols=179 Identities=24% Similarity=0.363 Sum_probs=107.0
Q ss_pred CccccCCCcchHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHH----------------hhcCC-----------CCCCCC
Q 018649 147 THVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELI----------------DCDNT-----------YNNGCN 198 (352)
Q Consensus 147 ~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~-~~~~lS~q~l~----------------dc~~~-----------~~~gC~ 198 (352)
.||.||..-|.||.||+...++..+..+.+ +.+.||+.++. ++... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 399999999999999999999999888765 56999999875 22211 123568
Q ss_pred CCchHHHHHHHHHhCCCCCCCCCCcccCC---------------------------------------------------
Q 018649 199 GGLMDYAFQYIVSTGGLHKEEDYPYIMEE--------------------------------------------------- 227 (352)
Q Consensus 199 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--------------------------------------------------- 227 (352)
||....+...+++. |+|+.+.||-....
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 99999999843100
Q ss_pred --CcccCC------CCCcc---------------------------------------eEEec-----------ceEecC
Q 018649 228 --GTCEMT------KGESE---------------------------------------VVTIN-----------GYHDVP 249 (352)
Q Consensus 228 --~~C~~~------~~~~~---------------------------------------~~~i~-----------~~~~v~ 249 (352)
+.++.. ..... .+.+. .|.++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNv- 293 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNV- 293 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEecc-
Confidence 000000 00000 00000 01111
Q ss_pred CCCHHHH----HHHHhcC-CeEEEEEecccccccccCceeeCCCC----------------------CCCCeEEEEEEee
Q 018649 250 QNSEDSL----LKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCG----------------------TQLDHGVAAVGYG 302 (352)
Q Consensus 250 ~~~~~~i----~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~----------------------~~~~Hav~iVGyg 302 (352)
..+.| ..+|..| ||..+.++. .. ...+.||.+...- +..+|||+|||.+
T Consensus 294 --pid~lk~~~i~~Lk~G~~VwfgcDV~-k~-~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 294 --PIDELKDAAIKSLKAGYPVWFGCDVG-KF-FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-TT-EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred --CHHHHHHHHHHHHHcCCcEEEeccCC-cc-ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 23444 4456678 999999997 44 4668898864320 1247999999999
Q ss_pred ec-CCc-cEEEEEcCCCCCCCCCceEEEEcc
Q 018649 303 ST-RGL-DYIIVKNSWGPKWGEKGYIRMKRN 331 (352)
Q Consensus 303 ~~-~g~-~ywivkNSWG~~WGe~Gy~~i~~~ 331 (352)
.+ +|+ .+|+|+||||++.|.+||+.++..
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 74 665 599999999999999999999853
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.52 E-value=1.2e-14 Score=102.72 Aligned_cols=56 Identities=57% Similarity=0.972 Sum_probs=52.5
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEcccCCCCCHHH
Q 018649 48 FESWMSKFEKVYESLDEKLERFEIFKDNLRHIDETNRK-IKNYWLGLNEFADLRHEE 103 (352)
Q Consensus 48 f~~~~~~y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~-~~s~~~g~N~FsDlt~~E 103 (352)
|++|+.+|+|.|.+..|+..|+.+|.+|++.|+.||+. ..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 68899999999999999999999999999999999986 479999999999999876
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.69 E-value=1e-07 Score=88.29 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=53.9
Q ss_pred CHHHHHHH----HhcC-CeEEEEEecccccccccCceeeCC----C---C-----C----------CCCeEEEEEEeeec
Q 018649 252 SEDSLLKA----LANQ-PLSVAIEASGRDFQFYSGGVYDGH----C---G-----T----------QLDHGVAAVGYGST 304 (352)
Q Consensus 252 ~~~~i~~~----l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~----~---~-----~----------~~~Hav~iVGyg~~ 304 (352)
+.+.++++ +..| +|-.+.++. -+..-+.||.+.. . + + -..|||+|.|.+.+
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d 373 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLD 373 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccc
Confidence 34555554 3456 888888875 5666677765421 0 0 0 13699999999866
Q ss_pred -CC-ccEEEEEcCCCCCCCCCceEEEE
Q 018649 305 -RG-LDYIIVKNSWGPKWGEKGYIRMK 329 (352)
Q Consensus 305 -~g-~~ywivkNSWG~~WGe~Gy~~i~ 329 (352)
+| .--|.|.||||.+=|.+|||-++
T Consensus 374 ~~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 374 ETGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred cCCCceeeEeecccccccCCCceEeeh
Confidence 44 34799999999999999999876
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.42 E-value=8e-05 Score=69.26 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=54.9
Q ss_pred CccccCCCcchHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHh--------------------hcCC---------CCCC
Q 018649 147 THVKNQGSCGSCWAFSTVAAVEGINQIVTG-NLASLSEQELID--------------------CDNT---------YNNG 196 (352)
Q Consensus 147 ~pVkdQg~cgsCwAfA~~~~lE~~~~~~~~-~~~~lS~q~l~d--------------------c~~~---------~~~g 196 (352)
+||.||..-|-||.|+.+..+--.+..+-+ ..+.||..+|+- |..- .+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999887655544433 237788887641 2110 1344
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCCC
Q 018649 197 CNGGLMDYAFQYIVSTGGLHKEEDYP 222 (352)
Q Consensus 197 C~GG~~~~a~~~~~~~~Gi~~e~~yP 222 (352)
-+||.-..-++.+++. |+.+..|||
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~ 167 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYL 167 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhcc
Confidence 5789888888888777 999999986
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.24 E-value=0.0045 Score=50.75 Aligned_cols=58 Identities=29% Similarity=0.540 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhcC-CeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCCccEEEEEcCC
Q 018649 250 QNSEDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSW 316 (352)
Q Consensus 250 ~~~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 316 (352)
..+.+.|+++|..| ||++.+....... .+..+. ....+|.|+|+||+++. +++|-.+|
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 45678999999887 9999987431111 111111 12468999999999853 78888877
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.31 E-value=0.044 Score=47.06 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=66.9
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHH--------HhCCCCCCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCCCCCCCC
Q 018649 150 KNQGSCGSCWAFSTVAAVEGINQI--------VTGNLASLSEQELIDCDNTYNNGCNGGLMDYAFQYIVSTGGLHKEEDY 221 (352)
Q Consensus 150 kdQg~cgsCwAfA~~~~lE~~~~~--------~~~~~~~lS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y 221 (352)
..||.-+-|-+||.+++|-..... -+.....+|+++|..++- .+...++|.+.. |...
T Consensus 17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~---- 82 (175)
T PF05543_consen 17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNP---- 82 (175)
T ss_dssp ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEE----
T ss_pred eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccch----
Confidence 358999999999999988765221 111235677777766642 356777776655 3211
Q ss_pred CcccCCCcccCCCCCcceEEecceEecCCCCHHHHHHHHhc-CCeEEEEEecccccccccCceeeCCCCCCCCeEEEEEE
Q 018649 222 PYIMEEGTCEMTKGESEVVTINGYHDVPQNSEDSLLKALAN-QPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVG 300 (352)
Q Consensus 222 PY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVG 300 (352)
.+.. ...+.+++++.+.+ .|+.+...... + ..+...+|||+|||
T Consensus 83 ----------------------~~~n-~~~s~~eV~~~~~~nk~i~i~~~~v~-------~-----~~~~~~gHAlavvG 127 (175)
T PF05543_consen 83 ----------------------QYNN-RMPSFDEVKKLIDNNKGIAILADRVE-------Q-----TNGPHAGHALAVVG 127 (175)
T ss_dssp ----------------------EEEC-S---HHHHHHHHHTT-EEEEEEEETT-------S-----CTTB--EEEEEEEE
T ss_pred ----------------------hHhc-CCCCHHHHHHHHHcCCCeEEEecccc-------c-----CCCCccceeEEEEe
Confidence 0110 11256888888865 48887665431 1 12235689999999
Q ss_pred eeec-CCccEEEEEcCCC
Q 018649 301 YGST-RGLDYIIVKNSWG 317 (352)
Q Consensus 301 yg~~-~g~~ywivkNSWG 317 (352)
|-.- +|.++.++=|=|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 9774 5688999988874
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=95.59 E-value=0.0094 Score=38.76 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCcEEEEcccCCCCCHHHHHHHHhCCC
Q 018649 76 LRHIDETNRKIKNYWLGLNEFADLRHEEFKEMFLGLK 112 (352)
Q Consensus 76 ~~~I~~~N~~~~s~~~g~N~FsDlt~~E~~~~~~~~~ 112 (352)
-++|+..|+.+.+|++|.| |.+.+.++++.+ +|..
T Consensus 3 de~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3578889988999999999 899998887664 4443
No 27
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=92.53 E-value=0.057 Score=41.97 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=17.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhhcccc
Q 018649 1 MALSSQFKTILISFCISFFIRSSFARD 27 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (352)
|| ||.++.|.|+|.++|++++..|++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhhH
Confidence 89 888886666665666665555543
No 28
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=90.28 E-value=0.76 Score=43.40 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=35.9
Q ss_pred HHHHHHHHhcC-CeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCCccEEEEEc
Q 018649 253 EDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKN 314 (352)
Q Consensus 253 ~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 314 (352)
.+.|+++|.+| ||.+.+++. +..|...-|. .....|.|+|+||++++ ..+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC
Confidence 45788888887 999998765 3333332221 12458999999999753 24556533
No 29
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.90 E-value=1 Score=38.97 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=37.5
Q ss_pred ecCCCCHHHHHHHHhcC-CeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCCccEEEEEcCCC
Q 018649 247 DVPQNSEDSLLKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWG 317 (352)
Q Consensus 247 ~v~~~~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 317 (352)
.++..+..+|+..|.+| ||.+-... |.. ..-|+|+|+|||+. ++..-++||
T Consensus 117 d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 117 DLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred cCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 44567899999999776 99876543 221 22499999999984 666777885
No 30
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=77.75 E-value=7.7 Score=34.68 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhcC-CeEEEEEecccccc--cccCceeeC---C--C--CCCCCeEEEEEEeeecCCccEEEEEc
Q 018649 251 NSEDSLLKALANQ-PLSVAIEASGRDFQ--FYSGGVYDG---H--C--GTQLDHGVAAVGYGSTRGLDYIIVKN 314 (352)
Q Consensus 251 ~~~~~i~~~l~~g-PV~v~~~~~~~~f~--~y~~Gi~~~---~--~--~~~~~Hav~iVGyg~~~g~~ywivkN 314 (352)
-+.++|...|..| |+++-++.. -+. .-+...... . + ....+|-|+|+||+... +-+++||
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~--~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAAT--KEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCC--CeEEEeC
Confidence 3678999999776 777766654 111 012222221 1 1 12468999999998764 3466665
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=77.13 E-value=7.8 Score=31.44 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=29.5
Q ss_pred HHHHHhcC-CeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCCccEEEEEcCC
Q 018649 256 LLKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSW 316 (352)
Q Consensus 256 i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 316 (352)
+++.+..+ ||++.+... + .....+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~~---~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDRK---GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcCC---CCEEEECCC
Confidence 77778776 999887641 0 11245799999999821 346667776
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=66.81 E-value=21 Score=33.78 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=23.7
Q ss_pred CCeEEEEEEeeecC--CccEEEEEcCCCC
Q 018649 292 LDHGVAAVGYGSTR--GLDYIIVKNSWGP 318 (352)
Q Consensus 292 ~~Hav~iVGyg~~~--g~~ywivkNSWG~ 318 (352)
.+||=.|++....+ |.....+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 58999999998766 7889999999994
No 33
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=55.51 E-value=17 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCccchhHHHHHHHHHHHHHHhhcc
Q 018649 1 MALSSQFKTILISFCISFFIRSSFA 25 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (352)
||.|--.+++++=|++++++|-+--
T Consensus 1 MAvSvLrltivlGLlvLIltC~Ad~ 25 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILTCHADD 25 (88)
T ss_pred CchHHHHHHHHHHHHHHHhhhccCC
Confidence 8999999999988899888887643
No 34
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=52.30 E-value=22 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 018649 8 KTILISFCISFFIRSSFAR 26 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ 26 (352)
|.|||.|+|+.+++++-++
T Consensus 4 Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSA 22 (65)
T ss_pred hhhHHHHHHHHHHHHHhcC
Confidence 4566667666666555544
No 35
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=51.27 E-value=76 Score=27.73 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=30.6
Q ss_pred HHHHHHHhcC-CeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeecCCccEEEEEcCCCCCCCCCceEE
Q 018649 254 DSLLKALANQ-PLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGSTRGLDYIIVKNSWGPKWGEKGYIR 327 (352)
Q Consensus 254 ~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~ 327 (352)
+.|+..|.++ ||.+.-.-. + .+||.+|=||..+ .||-+==.||-. .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~--------~----------~GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK--------S----------GGHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET--------T----------EEEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC--------C----------CCeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 5678888665 998664322 1 1799999999654 577653333311 468875
No 36
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=45.38 E-value=24 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 018649 8 KTILISFCISFFIRSSFA 25 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (352)
|.++++++++++.+|+..
T Consensus 2 k~l~~~~~~~lL~~Cs~~ 19 (204)
T PF11873_consen 2 KKLLLLLIALLLSGCSSE 19 (204)
T ss_pred cCHHHHHHHHHHHHhCCC
Confidence 445556666666667643
No 37
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=39.61 E-value=1.2e+02 Score=27.43 Aligned_cols=67 Identities=7% Similarity=0.166 Sum_probs=48.8
Q ss_pred cchhHHHHHHHHHHHHHHhhccccccccCCCCCCCCChhHHHHHHHHHHHHh-----CCccCC-HHHHHHHHHHHHHHHH
Q 018649 4 SSQFKTILISFCISFFIRSSFARDFSIVGYSPEDLTSNDKLIDLFESWMSKF-----EKVYES-LDEKLERFEIFKDNLR 77 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~y-----~k~Y~~-~~E~~~R~~~F~~n~~ 77 (352)
||-+..+++++.++.+++|- ..|++-++.|.+|...- +-.-.+ .+++.+.|..|...+.
T Consensus 1 ~r~~~p~~al~~~l~LagCg---------------dKEpeQR~AFi~fLQ~~i~~~~g~~vp~Lte~qKk~FG~Ya~dYa 65 (229)
T PF11254_consen 1 SRWFRPLLALLMVLQLAGCG---------------DKEPEQRKAFIDFLQNRIMRSPGVRVPTLTEDQKKAFGDYASDYA 65 (229)
T ss_pred CchHHHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHhCchHhHHH
Confidence 56677777777777777775 36788999999998641 112222 2455789999999999
Q ss_pred HHHHhcCC
Q 018649 78 HIDETNRK 85 (352)
Q Consensus 78 ~I~~~N~~ 85 (352)
.|..++.+
T Consensus 66 vl~~F~~~ 73 (229)
T PF11254_consen 66 VLTDFSQQ 73 (229)
T ss_pred HHHHHHHH
Confidence 99988875
No 38
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=33.73 E-value=87 Score=26.73 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=26.6
Q ss_pred CHHHHHHHH-hcCCeEEEEEecccccccccCceeeCCCCCCCCeEEEEEEeeec
Q 018649 252 SEDSLLKAL-ANQPLSVAIEASGRDFQFYSGGVYDGHCGTQLDHGVAAVGYGST 304 (352)
Q Consensus 252 ~~~~i~~~l-~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~Hav~iVGyg~~ 304 (352)
..+.+...| .+||+-++....++ ....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeecCC
Confidence 457888888 56899998554321 123699999998654
No 39
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=29.54 E-value=78 Score=26.18 Aligned_cols=18 Identities=11% Similarity=0.427 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHhCCc
Q 018649 41 NDKLIDLFESWMSKFEKV 58 (352)
Q Consensus 41 ~~~~~~~f~~~~~~y~k~ 58 (352)
.++.+++-.+|..+|.+.
T Consensus 65 ~~~ar~~indyvsrYRr~ 82 (135)
T TIGR03044 65 QAEARQLINDYISRYRRR 82 (135)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 334444555566665544
No 40
>PRK11901 hypothetical protein; Reviewed
Probab=29.12 E-value=37 Score=32.30 Aligned_cols=29 Identities=24% Similarity=0.133 Sum_probs=19.4
Q ss_pred CCccch--hHHHHHHHHHHHHHHhhcccccc
Q 018649 1 MALSSQ--FKTILISFCISFFIRSSFARDFS 29 (352)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 29 (352)
++.||+ |-+|.||+|+||++++.+|=-.|
T Consensus 31 ~~vSRQh~MiGiGilVLlLLIi~IgSALksP 61 (327)
T PRK11901 31 LAVSRQHMMIGIGILVLLLLIIAIGSALKSP 61 (327)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 356776 55667777777777777775444
No 41
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=28.47 E-value=1.1e+02 Score=29.19 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCeEEEEEEeeecCCcc--EEEEEcCCC
Q 018649 292 LDHGVAAVGYGSTRGLD--YIIVKNSWG 317 (352)
Q Consensus 292 ~~Hav~iVGyg~~~g~~--ywivkNSWG 317 (352)
.+||=.|++...-++.+ -..+||-||
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg 254 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWG 254 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCC
Confidence 58999999987665555 899999999
No 42
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.39 E-value=1.2e+02 Score=22.11 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=9.8
Q ss_pred CccchhHHHHHHHHHHHHHHh
Q 018649 2 ALSSQFKTILISFCISFFIRS 22 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (352)
.+....+.+++.|+++++.+-
T Consensus 2 ~l~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGF 22 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555543
No 43
>PF13333 rve_2: Integrase core domain
Probab=25.02 E-value=1.8e+02 Score=19.31 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=25.0
Q ss_pred hCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEcccCCCCCHHHHHHHH
Q 018649 55 FEKVYESLDEKLERFEIFKDNLRHIDETNRKIKNYWLGLNEFADLRHEEFKEMF 108 (352)
Q Consensus 55 y~k~Y~~~~E~~~R~~~F~~n~~~I~~~N~~~~s~~~g~N~FsDlt~~E~~~~~ 108 (352)
|.+.|.+.+|. +..| .++|+-+|.+. ++ .|||.|+++..
T Consensus 13 ~~~~~~t~eel--~~~I----~~YI~~yN~~R------l~---~lsP~eyr~~~ 51 (52)
T PF13333_consen 13 YRQKFKTREEL--KQAI----DEYIDYYNNER------LK---GLSPVEYRNQY 51 (52)
T ss_pred CCcccchHHHH--HHHH----HHHHHHhccCC------CC---CcCHHHHHHhh
Confidence 66677765553 3333 33788888764 22 89999998754
No 44
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.42 E-value=2.7e+02 Score=19.16 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEEeeecC--CccEEEEE-cCCC---CCCCCCceEEEE
Q 018649 295 GVAAVGYGSTR--GLDYIIVK-NSWG---PKWGEKGYIRMK 329 (352)
Q Consensus 295 av~iVGyg~~~--g~~ywivk-NSWG---~~WGe~Gy~~i~ 329 (352)
-++++|+.... ...+-++| |+=| ++||.+|..++.
T Consensus 13 kIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d 53 (55)
T TIGR02608 13 KILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFD 53 (55)
T ss_pred cEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEe
Confidence 36677776531 22344444 6666 589999998875
No 45
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.12 E-value=71 Score=28.44 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhhccccc
Q 018649 7 FKTILISFCISFFIRSSFARDF 28 (352)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (352)
|+.|+++++++++++|+.....
T Consensus 1 mk~i~~l~l~lll~~C~~~~~~ 22 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPNE 22 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCcc
Confidence 5666666677777777744433
No 46
>PF15240 Pro-rich: Proline-rich
Probab=21.78 E-value=63 Score=28.06 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcccccc
Q 018649 12 ISFCISFFIRSSFARDFS 29 (352)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (352)
+|||+.+|++-++|++..
T Consensus 3 lVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTD 20 (179)
T ss_pred hHHHHHHHHHhhhccccc
Confidence 345555555566666555
No 47
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.22 E-value=61 Score=26.39 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=3.0
Q ss_pred HHHHHH
Q 018649 48 FESWMS 53 (352)
Q Consensus 48 f~~~~~ 53 (352)
...|+.
T Consensus 36 gt~w~~ 41 (130)
T PF12273_consen 36 GTRWMA 41 (130)
T ss_pred CceecC
Confidence 345555
No 48
>PLN00115 pollen allergen group 3; Provisional
Probab=21.07 E-value=96 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.8
Q ss_pred eEEEEEEeeecCCccEEE--EEcCCCCCCC
Q 018649 294 HGVAAVGYGSTRGLDYII--VKNSWGPKWG 321 (352)
Q Consensus 294 Hav~iVGyg~~~g~~ywi--vkNSWG~~WG 321 (352)
++|-|=+-| ...|+ .+-|||..|-
T Consensus 48 ~~V~Ik~~g----~~~W~~~M~rswGavW~ 73 (118)
T PLN00115 48 SEVEIKEKG----AKDWVDDLKESSTNTWT 73 (118)
T ss_pred EEEEEeecC----CCcccCccccCccceeE
Confidence 445444432 34698 9999999997
No 49
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.56 E-value=61 Score=28.77 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=16.1
Q ss_pred CCccchhHHHHHHH-HHHHHHHhhcccccc
Q 018649 1 MALSSQFKTILISF-CISFFIRSSFARDFS 29 (352)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 29 (352)
|...+.++.+++.+ +.++++|++.|..-+
T Consensus 1 ~~~~~~~~~~l~~~As~LL~aC~~~~~~~~ 30 (206)
T COG3017 1 MPMMKRLLFLLLALASLLLTACTLTASRPP 30 (206)
T ss_pred CchHHHHHHHHHHHHHHHHHhccCcCCCCC
Confidence 44556677677666 555555444444333
No 50
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=20.18 E-value=3.1e+02 Score=18.95 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHH
Q 018649 6 QFKTILISFCISFFI 20 (352)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (352)
++-++++.||+++++
T Consensus 23 DlmTLLl~fFVlL~s 37 (58)
T PF13677_consen 23 DLMTLLLAFFVLLFS 37 (58)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
Done!