Query 018650
Match_columns 352
No_of_seqs 182 out of 682
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 5.5E-09 1.9E-13 85.4 11.2 99 12-126 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.8 5.3E-09 1.8E-13 88.9 7.3 100 12-127 5-105 (137)
3 2i68_A Protein EMRE; transmemb 97.7 0.00012 4.2E-09 61.8 8.0 70 222-297 36-105 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00076 2.6E-08 54.6 11.7 69 223-297 37-105 (110)
5 3o7q_A L-fucose-proton symport 14.0 6.7E+02 0.023 22.5 13.9 18 165-182 83-100 (438)
6 3eff_K Voltage-gated potassium 10.9 2.5E+02 0.0086 22.2 4.1 27 242-273 39-65 (139)
7 2zxe_G FXYD10, phospholemman-l 9.8 2.8E+02 0.0096 20.3 3.5 25 273-297 18-42 (74)
8 2jp3_A FXYD domain-containing 8.2 2.5E+02 0.0086 20.2 2.6 25 273-297 16-40 (67)
9 3arc_J Photosystem II reaction 6.7 4.5E+02 0.015 16.9 3.0 12 52-63 7-18 (40)
10 2jo1_A Phospholemman; FXYD1, N 6.7 3.7E+02 0.013 19.5 3.0 25 273-297 15-39 (72)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.95 E-value=5.5e-09 Score=85.37 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhHHHhhh-hhHHH
Q 018650 12 VLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALSI 90 (352)
Q Consensus 12 ~LAl~ss~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~l 90 (352)
++.+++.++.+.|+...|++. + ..+.+.++.+.+.+++++.+...|+...|++.+.|+ .++++
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~-------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE-------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 455677888999999999851 1 112355678888889999999999999999999999 89999
Q ss_pred HHHHHHHHHHhcCcCCccchhhHHHHhhhhheeeee
Q 018650 91 IVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIH 126 (352)
Q Consensus 91 v~~~~la~~~L~E~~~~~~~~G~~li~~G~~~~v~~ 126 (352)
+++.+++.+++||++++.+++|+.+++.|+.++...
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999887543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.83 E-value=5.3e-09 Score=88.87 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhcCcccCCcccccccchhHHHHHHHHHHHHHHHHHHHhhchhHHHhhh-hhHHH
Q 018650 12 VLALLSSFFIGSSFIIKKKGLRRAAAASGVRAGVGGFTYLLEPLWWVGMAIMIVGEVANFVAYAFAPAVLVTPL-GALSI 90 (352)
Q Consensus 12 ~LAl~ss~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~l~~p~W~~G~~l~~~g~~~~~~Al~~ap~slv~Pl-~a~~l 90 (352)
++.+++.++.+.|+.+.|++. + ..+.|.++.|++++++++.++..++...|++.+.|+ .++++
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~---g-------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p 68 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE---G-------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---c-------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 455667788999999999862 1 012345678999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhcCcCCccchhhHHHHhhhhheeeeec
Q 018650 91 IVSAVLAHFILHEKLPQLGILGCVMCIAGSIIIVIHA 127 (352)
Q Consensus 91 v~~~~la~~~L~E~~~~~~~~G~~li~~G~~~~v~~~ 127 (352)
+++.+++.+++||+++..+++|++++++|+.++....
T Consensus 69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998875433
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.66 E-value=0.00012 Score=61.80 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhhccCC
Q 018650 222 VAICVIMQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTK 297 (352)
Q Consensus 222 ~v~~~l~Q~~~ln~aL~~~~a~~v~Pi~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~lii~Gv~lLs~~~ 297 (352)
.+++...-..++++++++.|.+.++|+....-++++++.|.++|+|..+. ...+|.++++.|++++.+.+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~------~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhcCC
Confidence 33444445678899999999999999977778899999999999996553 45688899999999997654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.60 E-value=0.00076 Score=54.57 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhhccCC
Q 018650 223 AICVIMQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTILLHTTK 297 (352)
Q Consensus 223 v~~~l~Q~~~ln~aL~~~~a~~v~Pi~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~lii~Gv~lLs~~~ 297 (352)
+.+...-..++++++++.|.+.++|+....-++.+.+.|.++|+|..+ + .-.+|..+++.|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s--~----~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--L----PAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC--H----HHHHHHHHHHHHHHHHhcCC
Confidence 334444457889999999999999998788889999999999999654 4 45788899999999998754
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.04 E-value=6.7e+02 Score=22.46 Aligned_cols=18 Identities=0% Similarity=-0.121 Sum_probs=10.6
Q ss_pred hhcccCCCcchHHHHHHH
Q 018650 165 HFAPRCGNTNALVFIGIC 182 (352)
Q Consensus 165 ~~~~r~g~~~~~~~~~i~ 182 (352)
+...|+|+|+.+....+.
T Consensus 83 ~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 455677777765554433
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=10.86 E-value=2.5e+02 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=15.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcccCCCCH
Q 018650 242 TAVVSPIYYVMFTSLTILASVIMFKDWDGQTA 273 (352)
Q Consensus 242 a~~v~Pi~~v~~t~~~i~~G~i~f~E~~~~~~ 273 (352)
.+....+|+++-|..++. |+|..+.++
T Consensus 39 ~~~~~a~yf~~~T~tTvG-----yGd~~P~t~ 65 (139)
T 3eff_K 39 ITYPRALWWSVETATTVG-----YGDLYPVTL 65 (139)
T ss_dssp CCHHHHHHHHHHHHTTCC-----CSSSCCCSS
T ss_pred CCHHHHHHHHheeeeccc-----CCCCcCCCc
Confidence 345566666655554433 788766554
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.76 E-value=2.8e+02 Score=20.33 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 018650 273 AASIISEICGFVVVLSGTILLHTTK 297 (352)
Q Consensus 273 ~~~~~~~~~G~~lii~Gv~lLs~~~ 297 (352)
...+.+++++.++.+.|+.++-..|
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HheeccchhHHHHHHHHHHHHHcCc
Confidence 3567788899999999997766554
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.21 E-value=2.5e+02 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 018650 273 AASIISEICGFVVVLSGTILLHTTK 297 (352)
Q Consensus 273 ~~~~~~~~~G~~lii~Gv~lLs~~~ 297 (352)
.....+++++.++.+.|+.++-..|
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HheecchhhHHHHHHHHHHHHHcCc
Confidence 3566788888888999996665543
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=6.67 E-value=4.5e+02 Score=16.89 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.9
Q ss_pred cchhHHHHHHHH
Q 018650 52 LEPLWWVGMAIM 63 (352)
Q Consensus 52 ~~p~W~~G~~l~ 63 (352)
|-|+|++|.+.=
T Consensus 7 RiPLWlvgtv~G 18 (40)
T 3arc_J 7 RIPLWIVATVAG 18 (40)
T ss_dssp SSCHHHHHHHHH
T ss_pred cccEEeeeeehh
Confidence 469999887643
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=6.66 E-value=3.7e+02 Score=19.52 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 018650 273 AASIISEICGFVVVLSGTILLHTTK 297 (352)
Q Consensus 273 ~~~~~~~~~G~~lii~Gv~lLs~~~ 297 (352)
.....+++++.++.+.|+.++-..+
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCc
Confidence 4567788888888888886665544
Done!