Query 018650
Match_columns 352
No_of_seqs 182 out of 682
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 03:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 62.2 28 0.002 29.7 11.0 16 48-63 16-31 (447)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 15.4 1.4E+02 0.01 20.7 5.6 40 245-292 42-81 (103)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 8.5 5.6E+02 0.041 21.9 14.5 33 231-263 298-330 (383)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 7.0 2.2E+02 0.016 16.1 3.0 12 52-63 1-12 (34)
5 d1q90b_ f.21.1.2 (B:) Cytochro 5.8 2E+02 0.014 23.2 3.4 26 49-74 105-133 (212)
6 d1t01a1 a.24.9.1 (A:1-125) Vin 5.6 67 0.0048 24.0 0.3 9 344-352 67-75 (125)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.0 3.2E+02 0.023 15.6 3.0 20 215-234 18-37 (37)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.6 3.6E+02 0.026 14.1 2.6 10 212-221 7-16 (26)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 3.6 3.3E+02 0.024 14.9 2.2 21 80-100 10-30 (34)
10 d1cola_ f.1.1.1 (A:) Colicin A 3.1 4.2E+02 0.03 21.0 3.3 45 56-100 136-183 (197)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=62.15 E-value=28 Score=29.72 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=9.2
Q ss_pred cccccchhHHHHHHHH
Q 018650 48 FTYLLEPLWWVGMAIM 63 (352)
Q Consensus 48 ~~~l~~p~W~~G~~l~ 63 (352)
.+..|+.+|.+-..++
T Consensus 16 ~~~~~~~~w~i~~~~~ 31 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIF 31 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH
Confidence 3556677787644443
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.44 E-value=1.4e+02 Score=20.74 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhh
Q 018650 245 VSPIYYVMFTSLTILASVIMFKDWDGQTAASIISEICGFVVVLSGTIL 292 (352)
Q Consensus 245 v~Pi~~v~~t~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~lii~Gv~l 292 (352)
...+|+++-|..+ +=|+|..+.++. .-+++.+.++.|+.+
T Consensus 42 ~~aly~~~vT~tT-----vGYGDi~P~t~~---gr~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 42 PRALWWSVETATT-----VGYGDLYPVTLW---GRCVAVVVMVAGITS 81 (103)
T ss_dssp HHHHHHHHHHHTT-----CCCSSSCCCSHH---HHHHHHHHHHHHHHH
T ss_pred hhhhhhheeeecc-----cccCccccCChh---HHHHHHHHHHHHHHH
Confidence 3445555444433 337887666553 333444445555543
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.50 E-value=5.6e+02 Score=21.93 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHHhhcccCccccchhHHHHHHHHHHHHHHH
Q 018650 231 NYLNKALDTFNTAVVSPIYYVMFTSLTILASVI 263 (352)
Q Consensus 231 ~~ln~aL~~~~a~~v~Pi~~v~~t~~~i~~G~i 263 (352)
.++.+-++.-|+.-+.|+=-+.=...++..|..
T Consensus 298 ~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 298 TMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 455556888899999999766655555555553
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.97 E-value=2.2e+02 Score=16.15 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.3
Q ss_pred cchhHHHHHHHH
Q 018650 52 LEPLWWVGMAIM 63 (352)
Q Consensus 52 ~~p~W~~G~~l~ 63 (352)
|-|+|++|.+.-
T Consensus 1 riPLWlv~tv~G 12 (34)
T d2axtj1 1 RIPLWIVATVAG 12 (34)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCcEEEeeehhh
Confidence 358998887543
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.75 E-value=2e+02 Score=23.20 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=17.2
Q ss_pred ccccch---hHHHHHHHHHHHHHHHHHHH
Q 018650 49 TYLLEP---LWWVGMAIMIVGEVANFVAY 74 (352)
Q Consensus 49 ~~l~~p---~W~~G~~l~~~g~~~~~~Al 74 (352)
..+|+| .|+.|++++.+-....|..|
T Consensus 105 gsyk~pre~~W~~Gv~l~~l~m~~aftGY 133 (212)
T d1q90b_ 105 GGFKRPRELTWVTGVIMAVCTVSFGVTGY 133 (212)
T ss_dssp TTTSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCcccceehHhHHHHHHHHHHHHhhh
Confidence 345666 59999998876555555444
No 6
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.65 E-value=67 Score=24.05 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=5.8
Q ss_pred hhHHhhhcC
Q 018650 344 EDFCRQEMY 352 (352)
Q Consensus 344 ~~~~~~~~~ 352 (352)
++++|||||
T Consensus 67 d~~lk~eM~ 75 (125)
T d1t01a1 67 DQILKRDMP 75 (125)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 356777774
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.97 E-value=3.2e+02 Score=15.58 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018650 215 TWFFMLVVAICVIMQMNYLN 234 (352)
Q Consensus 215 ~y~~l~~~v~~~l~Q~~~ln 234 (352)
.|-++.+.+.++++-.+|+|
T Consensus 18 y~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34555566666777767665
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.62 E-value=3.6e+02 Score=14.14 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=4.9
Q ss_pred chHHHHHHHH
Q 018650 212 YPDTWFFMLV 221 (352)
Q Consensus 212 ~~~~y~~l~~ 221 (352)
-|.+|.++..
T Consensus 7 iw~fw~ffal 16 (26)
T d1rzhh2 7 IYSFWIFLAG 16 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3555555433
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.58 E-value=3.3e+02 Score=14.94 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=12.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 018650 80 VLVTPLGALSIIVSAVLAHFI 100 (352)
Q Consensus 80 slv~Pl~a~~lv~~~~la~~~ 100 (352)
..|+.+.+.+++++++-.++.
T Consensus 10 vmvagits~glv~aa~atwfv 30 (34)
T d2p7tc1 10 VMVAGITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccchhhhHHHHHHHHhh
Confidence 455666677777766644443
No 10
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=3.07 E-value=4.2e+02 Score=20.97 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHH---HhhhhhHHHHHHHHHHHHH
Q 018650 56 WWVGMAIMIVGEVANFVAYAFAPAVL---VTPLGALSIIVSAVLAHFI 100 (352)
Q Consensus 56 W~~G~~l~~~g~~~~~~Al~~ap~sl---v~Pl~a~~lv~~~~la~~~ 100 (352)
|.+|.+...+....-.+.++..+.++ ++|+|.++++...+.+.++
T Consensus 136 ~~~~~~At~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v~alI 183 (197)
T d1cola_ 136 WVLSGIASSVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVVGALI 183 (197)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHh
Done!