BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018651
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 27/200 (13%)
Query: 141 LIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGI 200
LI P+D RL +QG S+ +V +S +Y L ++ +GPR LY G
Sbjct: 17 LITFPLDTAKVRLQIQG----ESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG--- 69
Query: 201 SILAYAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAVQTLS 260
L + +AS + G + S K + K + A + + L+
Sbjct: 70 --LVAGLQRQMSFASVRI---------GLYDSVKQFYT--------KGSEHAGIGSRLLA 110
Query: 261 AAMASGVSALITMPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKEGGFAACYRGLGP 320
+ ++ + P D +K R Q A G RR + ++ + + +E G ++G P
Sbjct: 111 GSTTGALAVAVAQPTDVVKVRFQA-QARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 321 RWXXXXXXXXXXXXXYEFLK 340
Y+ +K
Sbjct: 170 NVARNAIVNCAELVTYDLIK 189
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 254 VAVQTLSAAMASGVSALITMPLDTIKTRLQVLDAEEKGQRRPLT------VLQTVRNLVK 307
+ V+ L A A+ ++ LIT PLDT K RLQ+ E +G R VL T+ +V+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQI-QGESQGLVRTAASAQYRGVLGTILTMVR 59
Query: 308 EGGFAACYRGLGPRWXXXXXXXXXXXXXYEFLKRHSTKSQE 348
G + Y GL Y+ +K+ TK E
Sbjct: 60 TEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE 100
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 141 LIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGI 200
+I +PVDVV R M N + +Y + +L +GPR Y+GF
Sbjct: 218 VIASPVDVVKTRYM--------------NSALGQYHSAGHCALTMLRKEGPRAFYKGFMP 263
Query: 201 SILAYAPSNAVWWASYSVANRLIWGGF 227
S L N V + +Y R + +
Sbjct: 264 SFLRLGSWNVVMFVTYEQLKRALMAAY 290
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 70/208 (33%), Gaps = 52/208 (25%)
Query: 142 IWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGIS 201
+ P DVV R Q + RY + ++A++ I +G RGL++G +
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGR----------RYQSTVEAYKTIAREEGIRGLWKGTSPN 170
Query: 202 ILAYAPSNAVWWASYSVAN------RLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVA 255
+ A N +Y + L+ CH +
Sbjct: 171 VARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFT----------------------- 207
Query: 256 VQTLSAAMASGVSALITMPLDTIKTRLQ--VLDAEEKGQRRPLTVLQTVRNLVKEGGFAA 313
SA A + +I P+D +KTR L LT+L+ KEG A
Sbjct: 208 ----SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLR------KEGP-RA 256
Query: 314 CYRGLGPRWXXXXXXXXXXXXXYEFLKR 341
Y+G P + YE LKR
Sbjct: 257 FYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 184 KILVADGPRGLYRGFGISILAYAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGC 243
KI +DG RGLY+GF +S+ A ++ Y A ++
Sbjct: 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML-------------------- 201
Query: 244 TSYKPNSKAV-VAVQTLSAAMASGVSALITMPLDTIKTRLQVLDAEEKGQRRPLTVLQTV 302
P+ K V + V + A + V+ L++ P DT++ R+ + + +
Sbjct: 202 ----PDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCW 257
Query: 303 RNLVKEGGFAACYRG 317
R + K+ G A ++G
Sbjct: 258 RKIAKDEGPKAFFKG 272
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 17/128 (13%)
Query: 70 QIMCYEGFKGFYRGFGTSLMGTIPARALYMTALEITKSNVGTATVRLGFSDXXXXXXXXX 129
+I +G +G Y+GF S+ G I RA Y + K +
Sbjct: 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP--------DPKNVHIIVSW 213
Query: 130 XXXXXXXXXXQLIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVAD 189
L+ P D V +R+M+Q K + Y+ +D +RKI +
Sbjct: 214 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG---------ADIMYTGTVDCWRKIAKDE 264
Query: 190 GPRGLYRG 197
GP+ ++G
Sbjct: 265 GPKAFFKG 272
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 259 LSAAMASGVSALITMPLDTIKTRLQVLDAEEK--GQRRPLTVLQTVRNLVKEGGFAACYR 316
L+ +A+ +S P++ +K LQV A ++ +++ ++ V + KE GF + +R
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 317 G 317
G
Sbjct: 72 G 72
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 26/175 (14%)
Query: 145 PVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGISILA 204
P++ V L VQ SK S + +Y +D +I G +RG +++
Sbjct: 27 PIERVKLLLQVQHASKQIS-------AEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79
Query: 205 YAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAVQTLSAAMA 264
Y P+ A+ +A ++ GG H K +G L++ A
Sbjct: 80 YFPTQALNFAFKDKYKQIFLGGVDRH---KQFWRYFAG---------------NLASGGA 121
Query: 265 SGVSAL-ITMPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKEGGFAACYRGL 318
+G ++L PLD +TRL + QR + + + K G Y+G
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution.
pdb|2BTU|B Chain B, Crystal Structure Of Phosphoribosylformylglycinamidine
Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution
Length = 346
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 146 VDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFG 199
V +V ++ +V G ++ SS +SNG RK+L+ DG L R +G
Sbjct: 158 VGIVDKKKIVTGEKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGELSLDRIYG 211
>pdb|2AMP|A Chain A, Crystal Structure Of Porcine Transmissible Gastroenteritis
Virus Mpro In Complex With An Inhibitor N1
pdb|2AMP|B Chain B, Crystal Structure Of Porcine Transmissible Gastroenteritis
Virus Mpro In Complex With An Inhibitor N1
Length = 304
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 37 LFSGVSAALYPIV--VLKTRQQVLSTPISSFK-----MSFQIM-CYEGFKGFYRGFGTSL 88
+F GV +A Y V VLK Q +TP FK SF I+ CYEG G G
Sbjct: 74 VFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRS 133
Query: 89 MGTI 92
GTI
Sbjct: 134 QGTI 137
>pdb|4F49|A Chain A, 2.25a Resolution Structure Of Transmissible
Gastroenteritis Virus Protease Containing A Covalently
Bound Dipeptidyl Inhibitor
pdb|4F49|B Chain B, 2.25a Resolution Structure Of Transmissible
Gastroenteritis Virus Protease Containing A Covalently
Bound Dipeptidyl Inhibitor
pdb|4F49|C Chain C, 2.25a Resolution Structure Of Transmissible
Gastroenteritis Virus Protease Containing A Covalently
Bound Dipeptidyl Inhibitor
pdb|4F49|D Chain D, 2.25a Resolution Structure Of Transmissible
Gastroenteritis Virus Protease Containing A Covalently
Bound Dipeptidyl Inhibitor
Length = 310
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 37 LFSGVSAALYPIV--VLKTRQQVLSTPISSFK-----MSFQIM-CYEGFKGFYRGFGTSL 88
+F GV +A Y V VLK Q +TP FK SF I+ CYEG G G
Sbjct: 79 VFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRS 138
Query: 89 MGTI 92
GTI
Sbjct: 139 QGTI 142
>pdb|1LVO|A Chain A, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|B Chain B, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|C Chain C, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|D Chain D, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|E Chain E, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1LVO|F Chain F, Structure Of Coronavirus Main Proteinase Reveals
Combination Of A Chymotrypsin Fold With An Extra Alpha-
Helical Domain
pdb|1P9U|A Chain A, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
pdb|1P9U|B Chain B, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
pdb|1P9U|C Chain C, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
pdb|1P9U|D Chain D, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
pdb|1P9U|E Chain E, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
pdb|1P9U|F Chain F, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-sars Drugs
Length = 302
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 37 LFSGVSAALYPIV--VLKTRQQVLSTPISSFK-----MSFQIM-CYEGFKGFYRGFGTSL 88
+F GV +A Y V VLK Q +TP FK SF I+ CYEG G G
Sbjct: 72 VFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRS 131
Query: 89 MGTI 92
GTI
Sbjct: 132 QGTI 135
>pdb|2PN2|A Chain A, Crystal Structure Of A Putative Osmotic Stress Induced And
Detoxification Response Protein (Psyc_0566) From
Psychrobacter Arcticus 273-4 At 2.15 A Resolution
Length = 155
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 3 LGAAEDDSASEIHIPAEIDWHMLDKSKFFFLGAALFSGVSAALYPIVVLK 52
+ AA+ SE+HI + + DK++ F AL V+ +++P + K
Sbjct: 98 VXAADPRRVSEVHIAITFNQELDDKTQKIFYNTALTCPVAKSIHPDIFQK 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,202
Number of Sequences: 62578
Number of extensions: 309618
Number of successful extensions: 687
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 21
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)