Query 018651
Match_columns 352
No_of_seqs 155 out of 1665
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4.5E-54 1.6E-58 386.3 26.9 283 25-343 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.3E-54 4.5E-59 390.7 23.2 277 29-348 3-291 (303)
3 1okc_A ADP, ATP carrier protei 100.0 5E-35 1.7E-39 262.4 20.5 200 122-346 4-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.9E-34 6.4E-39 259.2 16.4 193 128-347 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 33.2 27 0.00094 23.5 2.4 36 310-345 33-68 (81)
6 1pp9_G Ubiquinol-cytochrome C 24.3 47 0.0016 22.4 2.3 37 309-345 32-68 (81)
7 3tgu_G UQCRQ, mitochondrial ub 19.4 83 0.0028 21.2 2.8 39 189-227 32-70 (81)
8 2acm_A Mucin-1; auto-catalytic 18.6 24 0.00083 22.0 -0.0 19 177-195 41-59 (66)
9 1y9i_A Low temperature require 18.5 1.6E+02 0.0055 23.0 4.6 46 208-269 112-157 (178)
10 3f2e_A SIRV coat protein; four 16.9 59 0.002 21.4 1.5 34 173-206 6-43 (100)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.5e-54 Score=386.33 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=239.1
Q ss_pred CchHHHHHHHhHHHHhHhhhhccHHHHHHHHHhCCC---------CCCHHHHHHHHHHhhcccccccchhHhhhcchhhh
Q 018651 25 LDKSKFFFLGAALFSGVSAALYPIVVLKTRQQVLST---------PISSFKMSFQIMCYEGFKGFYRGFGTSLMGTIPAR 95 (352)
Q Consensus 25 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~---------~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~ 95 (352)
++....+++|+++++++.+++||||++|+|+|++.. ..+.++++++|+++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 455678999999999999999999999999998752 36899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhcCCCCCCcccccCCCCCCC
Q 018651 96 ALYMTALEITKSNVGTATVRLGFSDTTATTIANAAAGLSSAMAAQLIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRY 175 (352)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+++|.+||.+++.+...... ...........+++|++|++++.++++|+|+||+|+|.+.... .....|
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~--~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---------~~~~~~ 153 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDR--HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG---------AAQREF 153 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCT--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---------TTTCSC
T ss_pred HHHHHHHHHHHHHhccccCc--ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---------CcCcCC
Confidence 99999999999854321110 0111234577899999999999999999999999999985321 113568
Q ss_pred CcHHHHHHHHHHhcCccccccchhHHHHhhhccchhHHHHHHHHHHHHhhccCCCCCcccccccCCCCCCCCCCCcchHH
Q 018651 176 SNGLDAFRKILVADGPRGLYRGFGISILAYAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVA 255 (352)
Q Consensus 176 ~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
+++++++++|+++||++|||||+.+++++.+|+.+++|.+||.+++.+.+.. ..+..
T Consensus 154 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----------------------~~~~~ 210 (297)
T 1okc_A 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----------------------NVHII 210 (297)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----------------------CSCHH
T ss_pred CCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------CccHH
Confidence 9999999999999999999999999999999999999999999998653210 11256
Q ss_pred HHHHHHHHHHHhHHhhcchHHHHHHHHhhcccc-ccCCCCCCcHHHHHHHHHHhhchhhhhcchhhhhhhhhcchhhhHh
Q 018651 256 VQTLSAAMASGVSALITMPLDTIKTRLQVLDAE-EKGQRRPLTVLQTVRNLVKEGGFAACYRGLGPRWASMSMSATTMIT 334 (352)
Q Consensus 256 ~~~~~g~~ag~~~~~it~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~ 334 (352)
..+++|++||++++++++|+|+||+|||++... .....|. ++++|+++++++||++|||||+.++++|. +.++++|.
T Consensus 211 ~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~-~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~ 288 (297)
T 1okc_A 211 VSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYT-GTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLV 288 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCS-SHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeeh
Confidence 788999999999999999999999999997643 2234678 99999999999999999999999999996 57799999
Q ss_pred hHHHHHHHh
Q 018651 335 TYEFLKRHS 343 (352)
Q Consensus 335 ~~~~~~~~~ 343 (352)
+||.+|+++
T Consensus 289 ~ye~~k~~l 297 (297)
T 1okc_A 289 LYDEIKKFV 297 (297)
T ss_dssp HHHTC----
T ss_pred HHHHHHhhC
Confidence 999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-54 Score=390.72 Aligned_cols=277 Identities=19% Similarity=0.246 Sum_probs=246.2
Q ss_pred HHHHHHhHHHHhHhhhhccHHHHHHHHHhCCC------------CCCHHHHHHHHHHhhcccccccchhHhhhcchhhhH
Q 018651 29 KFFFLGAALFSGVSAALYPIVVLKTRQQVLST------------PISSFKMSFQIMCYEGFKGFYRGFGTSLMGTIPARA 96 (352)
Q Consensus 29 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~------------~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~ 96 (352)
..+++|+++++++.+++||||++|+|+|++.. ..+.++++++|+++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 35899999999999999999999999998753 368999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCchhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 018651 97 LYMTALEITKSNVGTATVRLGFSDTTATTIANAAAGLSSAMAAQLIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYS 176 (352)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~ 176 (352)
++|.+||.+|+.+.... + .......+++|++|++++.++++|+|+||+|+|.+.... ....|+
T Consensus 83 i~f~~ye~~k~~~~~~~------~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----------~~~~~~ 145 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS------E-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG----------GGRRYQ 145 (303)
T ss_dssp HTTTHHHHHHHHHSCCC------S-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC----------CSSSCC
T ss_pred HHHHHHHHHHHHHhcCC------c-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC----------CCCCCC
Confidence 99999999999886421 1 245677899999999999999999999999999986421 135789
Q ss_pred cHHHHHHHHHHhcCccccccchhHHHHhhhccchhHHHHHHHHHHHHhhccCCCCCcccccccCCCCCCCCCCCcchHHH
Q 018651 177 NGLDAFRKILVADGPRGLYRGFGISILAYAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAV 256 (352)
Q Consensus 177 ~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
+.++++++|++++|++|||||+.+++++.+++.+++|.+||.+++.+.+... ...+...
T Consensus 146 ~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---------------------~~~~~~~ 204 (303)
T 2lck_A 146 STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---------------------MTDDLPC 204 (303)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---------------------CCSCHHH
T ss_pred CHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------CCCchHH
Confidence 9999999999999999999999999999999999999999999998753210 1123567
Q ss_pred HHHHHHHHHHhHHhhcchHHHHHHHHhhccccccCCCCCCcHHHHHHHHHHhhchhhhhcchhhhhhhhhcchhhhHhhH
Q 018651 257 QTLSAAMASGVSALITMPLDTIKTRLQVLDAEEKGQRRPLTVLQTVRNLVKEGGFAACYRGLGPRWASMSMSATTMITTY 336 (352)
Q Consensus 257 ~~~~g~~ag~~~~~it~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~ 336 (352)
.+++|++||++++++++|+|+||+|||++... .|. ++++|+++++++||++|||||+.++++|.+|.++++|.+|
T Consensus 205 ~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~----~y~-~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~y 279 (303)
T 2lck_A 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG----QYH-SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----SCC-SHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc----ccC-CHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999999999999998642 477 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhh
Q 018651 337 EFLKRHSTKSQE 348 (352)
Q Consensus 337 ~~~~~~~~~~~~ 348 (352)
|.+|+++.+..+
T Consensus 280 e~~k~~l~~~~~ 291 (303)
T 2lck_A 280 EQLKRALMAAYQ 291 (303)
T ss_dssp HHHHSCCCCHHH
T ss_pred HHHHHHHHHhcc
Confidence 999998876554
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5e-35 Score=262.39 Aligned_cols=200 Identities=19% Similarity=0.224 Sum_probs=169.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhcCCCCCCcccccCCCCCCCCcHHHHHHHHHHhcCccccccchhHH
Q 018651 122 TATTIANAAAGLSSAMAAQLIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGIS 201 (352)
Q Consensus 122 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~ 201 (352)
..+.+..+++|++|++++.++++|+|++|+|+|.+..... ......|+++++++++|+++||+++||||+.++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ 76 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-------ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLAN 76 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-------CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-------cccccccccHHHHHHHHHhccchhheecccHHH
Confidence 4567788999999999999999999999999999864321 111346899999999999999999999999999
Q ss_pred HHhhhccchhHHHHHHHHHHHHhhccCCCCCcccccccCCCCCCCCCCCcchHHHHHHHHHHHHHhHHhhcchHHHHHHH
Q 018651 202 ILAYAPSNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAVQTLSAAMASGVSALITMPLDTIKTR 281 (352)
Q Consensus 202 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~it~Pld~ik~r 281 (352)
+++.+++.+++|.+||.+++.+...... ...........+++|++||++++++++|+|+||+|
T Consensus 77 l~~~~~~~~~~f~~ye~~k~~~~~~~~~-----------------~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 139 (297)
T 1okc_A 77 VIRYFPTQALNFAFKDKYKQIFLGGVDR-----------------HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR 139 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCT-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCc-----------------ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 9999999999999999999964321100 00111235678999999999999999999999999
Q ss_pred Hhhccccc-cCCCCCCcHHHHHHHHHHhhchhhhhcchhhhhhhhhcchhhhHhhHHHHHHHhhhh
Q 018651 282 LQVLDAEE-KGQRRPLTVLQTVRNLVKEGGFAACYRGLGPRWASMSMSATTMITTYEFLKRHSTKS 346 (352)
Q Consensus 282 ~q~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (352)
||++.... ....|. ++++|+++++++||++|||||+.++++|.+|.+++.|.+||.+|+.+.+.
T Consensus 140 lq~~~~~~~~~~~~~-~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 140 LAADVGKGAAQREFT-GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCCCSSTTTCSCS-SHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccccCCCcCcCCC-CHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99986432 234577 99999999999999999999999999999999999999999999987653
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=259.23 Aligned_cols=193 Identities=21% Similarity=0.356 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHhhcCCCCCCcccccCCCCCCCCcHHHHHHHHHHhcCccccccchhHHHHhhhc
Q 018651 128 NAAAGLSSAMAAQLIWTPVDVVSQRLMVQGYSKNNSKTIVPNVSSCRYSNGLDAFRKILVADGPRGLYRGFGISILAYAP 207 (352)
Q Consensus 128 ~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~ 207 (352)
.+++|++|++++.++++|+|++|+|+|.+....... .......|+++++++++|+++||+++||||+.+++++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 79 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV----RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMS 79 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH----HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc----ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHH
Confidence 578999999999999999999999999986421000 0011246899999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhccCCCCCcccccccCCCCCCCCCCCcchHHHHHHHHHHHHHhHHhhcchHHHHHHHHhhccc
Q 018651 208 SNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAVQTLSAAMASGVSALITMPLDTIKTRLQVLDA 287 (352)
Q Consensus 208 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~it~Pld~ik~r~q~~~~ 287 (352)
+.+++|.+||.+++.+.+... ..+....+++|++||++++++++|+|+||+|||++..
T Consensus 80 ~~~i~f~~ye~~k~~~~~~~~----------------------~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~ 137 (303)
T 2lck_A 80 FASVRIGLYDSVKQFYTKGSE----------------------HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137 (303)
T ss_dssp HHHHTTTHHHHHHHHHSCCCS----------------------SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHhcCCc----------------------CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccc
Confidence 999999999999998743200 1236788999999999999999999999999999876
Q ss_pred cccCCCCCCcHHHHHHHHHHhhchhhhhcchhhhhhhhhcchhhhHhhHHHHHHHhhhhh
Q 018651 288 EEKGQRRPLTVLQTVRNLVKEGGFAACYRGLGPRWASMSMSATTMITTYEFLKRHSTKSQ 347 (352)
Q Consensus 288 ~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (352)
......|. ++++|+++++++||++|||||+.++++|.+|..++.|.+||.+|+.+.+..
T Consensus 138 ~~~~~~~~-~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 138 AGGGRRYQ-STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp CCCSSSCC-CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred cCCCCCCC-CHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43445688 999999999999999999999999999999999999999999999987643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=33.16 E-value=27 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.102 Sum_probs=29.3
Q ss_pred chhhhhcchhhhhhhhhcchhhhHhhHHHHHHHhhh
Q 018651 310 GFAACYRGLGPRWASMSMSATTMITTYEFLKRHSTK 345 (352)
Q Consensus 310 G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (352)
|+...+|-+..+++.++|..++...+|+...+....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 566777777888999999999999999888876543
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=24.29 E-value=47 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=30.0
Q ss_pred hchhhhhcchhhhhhhhhcchhhhHhhHHHHHHHhhh
Q 018651 309 GGFAACYRGLGPRWASMSMSATTMITTYEFLKRHSTK 345 (352)
Q Consensus 309 eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (352)
.|+...+|-+.-+++.++|..++...+|+...+....
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 3567777888888889999999999999888876543
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.43 E-value=83 Score=21.16 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=31.0
Q ss_pred cCccccccchhHHHHhhhccchhHHHHHHHHHHHHhhcc
Q 018651 189 DGPRGLYRGFGISILAYAPSNAVWWASYSVANRLIWGGF 227 (352)
Q Consensus 189 ~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 227 (352)
+|+...+|-+...++..+|..++.+.+|++.++......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666788889999999999999999998876543
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.59 E-value=24 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHhcCccccc
Q 018651 177 NGLDAFRKILVADGPRGLY 195 (352)
Q Consensus 177 ~~~~~~~~i~~~~G~~gly 195 (352)
++.+.+.+||+++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5678889999999998876
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.48 E-value=1.6e+02 Score=23.04 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHhhccCCCCCcccccccCCCCCCCCCCCcchHHHHHHHHHHHHHhHH
Q 018651 208 SNAVWWASYSVANRLIWGGFGCHISQKDENSASSGCTSYKPNSKAVVAVQTLSAAMASGVSA 269 (352)
Q Consensus 208 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~ 269 (352)
.....|..||..|-...++......+ ..-.++.++++|.+|+++..
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~g----------------g~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGI----------------AVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSS----------------CCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCC----------------CCcchHHHHHHHHHHHHHHH
Confidence 55667778888876655544322111 12237888888888887653
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.85 E-value=59 Score=21.42 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCCcHHHHHHHHHHhcCc----cccccchhHHHHhhh
Q 018651 173 CRYSNGLDAFRKILVADGP----RGLYRGFGISILAYA 206 (352)
Q Consensus 173 ~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~~~ 206 (352)
+++.++-+-+..+..+-|+ +.+|+||+..+.|.+
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 5677777777888888886 457888887776553
Done!