Query 018652
Match_columns 352
No_of_seqs 372 out of 3371
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 2.2E-49 4.7E-54 376.8 40.2 317 2-333 76-394 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 4.9E-49 1.1E-53 361.2 30.0 330 2-341 145-476 (478)
3 TIGR02374 nitri_red_nirB nitri 100.0 2E-40 4.3E-45 337.8 39.2 307 2-326 72-384 (785)
4 PRK14989 nitrite reductase sub 100.0 3.9E-40 8.4E-45 335.5 39.7 309 2-326 77-395 (847)
5 PRK04965 NADH:flavorubredoxin 100.0 2.3E-39 5E-44 306.3 36.2 288 2-310 76-367 (377)
6 COG1251 NirB NAD(P)H-nitrite r 100.0 5.9E-41 1.3E-45 321.0 25.1 307 2-326 77-389 (793)
7 PRK13512 coenzyme A disulfide 100.0 4.1E-38 8.9E-43 302.9 34.0 315 2-336 76-424 (438)
8 COG1249 Lpd Pyruvate/2-oxoglut 100.0 5.5E-38 1.2E-42 297.7 32.8 301 14-343 121-454 (454)
9 PRK09564 coenzyme A disulfide 100.0 6E-38 1.3E-42 303.0 33.4 325 2-339 74-433 (444)
10 TIGR03385 CoA_CoA_reduc CoA-di 100.0 8.5E-38 1.8E-42 300.4 33.2 312 2-326 62-404 (427)
11 PLN02507 glutathione reductase 100.0 4.1E-37 8.9E-42 299.5 33.3 310 3-343 142-483 (499)
12 PRK05249 soluble pyridine nucl 100.0 3.2E-36 6.9E-41 292.2 36.4 314 5-348 114-458 (461)
13 PRK07846 mycothione reductase; 100.0 3.1E-36 6.7E-41 290.4 34.0 303 13-346 115-449 (451)
14 PRK06370 mercuric reductase; V 100.0 4.9E-36 1.1E-40 290.8 34.7 309 12-348 120-458 (463)
15 PRK14694 putative mercuric red 100.0 4.9E-36 1.1E-40 290.9 33.5 315 3-348 115-458 (468)
16 TIGR01424 gluta_reduc_2 glutat 100.0 3.1E-36 6.7E-41 290.6 31.2 307 4-342 109-445 (446)
17 PRK07845 flavoprotein disulfid 100.0 1E-35 2.2E-40 288.4 34.3 308 11-348 122-461 (466)
18 PRK06116 glutathione reductase 100.0 5.4E-36 1.2E-40 289.6 31.7 304 6-342 114-449 (450)
19 PRK06115 dihydrolipoamide dehy 100.0 1.1E-35 2.3E-40 288.1 33.5 307 16-350 124-463 (466)
20 PRK06416 dihydrolipoamide dehy 100.0 1E-35 2.2E-40 288.7 33.2 314 5-349 112-458 (462)
21 PRK06467 dihydrolipoamide dehy 100.0 1.3E-35 2.8E-40 287.8 33.7 313 6-349 114-461 (471)
22 TIGR01421 gluta_reduc_1 glutat 100.0 1.9E-35 4.2E-40 285.0 33.2 299 13-342 117-449 (450)
23 TIGR01423 trypano_reduc trypan 100.0 2.1E-35 4.6E-40 285.9 33.1 291 23-343 148-471 (486)
24 TIGR03452 mycothione_red mycot 100.0 3.2E-35 7E-40 283.6 34.1 303 13-346 118-452 (452)
25 PTZ00058 glutathione reductase 100.0 2.7E-35 5.8E-40 288.2 33.1 306 20-346 196-560 (561)
26 TIGR02053 MerA mercuric reduct 100.0 3.8E-35 8.2E-40 284.7 33.7 306 13-348 114-453 (463)
27 PRK05976 dihydrolipoamide dehy 100.0 4.7E-35 1E-39 284.5 33.9 317 3-347 110-466 (472)
28 PLN02546 glutathione reductase 100.0 1.7E-35 3.7E-40 289.8 30.5 306 5-343 198-532 (558)
29 PRK13748 putative mercuric red 100.0 3.5E-35 7.6E-40 291.5 33.0 314 4-348 208-551 (561)
30 PRK07818 dihydrolipoamide dehy 100.0 8.2E-35 1.8E-39 282.4 33.9 313 6-350 106-463 (466)
31 PRK08010 pyridine nucleotide-d 100.0 3.4E-35 7.3E-40 283.4 30.8 309 5-344 97-438 (441)
32 PTZ00153 lipoamide dehydrogena 100.0 1.4E-34 3E-39 286.8 34.1 306 15-347 262-654 (659)
33 PRK14727 putative mercuric red 100.0 9.7E-35 2.1E-39 282.4 31.8 307 10-347 132-468 (479)
34 PRK06912 acoL dihydrolipoamide 100.0 4E-34 8.7E-39 276.8 34.2 313 5-348 110-453 (458)
35 TIGR01438 TGR thioredoxin and 100.0 1.7E-34 3.8E-39 280.1 31.4 293 23-345 140-470 (484)
36 COG1252 Ndh NADH dehydrogenase 100.0 1.3E-35 2.7E-40 275.1 22.3 237 2-253 75-341 (405)
37 PRK06327 dihydrolipoamide dehy 100.0 2.4E-33 5.2E-38 272.5 34.2 314 5-348 120-470 (475)
38 TIGR01350 lipoamide_DH dihydro 100.0 1.9E-33 4.2E-38 272.8 33.3 316 6-349 110-457 (461)
39 KOG1346 Programmed cell death 100.0 2.5E-35 5.5E-40 264.5 17.0 319 2-326 275-647 (659)
40 PRK06292 dihydrolipoamide dehy 100.0 2.2E-33 4.9E-38 272.2 31.2 301 15-348 120-455 (460)
41 PTZ00318 NADH dehydrogenase-li 100.0 6E-34 1.3E-38 272.9 26.4 237 2-253 79-358 (424)
42 PTZ00052 thioredoxin reductase 100.0 3.8E-33 8.3E-38 271.9 30.1 301 13-343 128-478 (499)
43 PRK07251 pyridine nucleotide-d 100.0 1.2E-32 2.7E-37 265.3 31.0 300 13-343 102-436 (438)
44 TIGR03169 Nterm_to_SelD pyridi 100.0 2.4E-31 5.1E-36 250.6 25.6 222 3-240 72-308 (364)
45 KOG1335 Dihydrolipoamide dehyd 100.0 1.8E-31 4E-36 237.8 22.2 310 11-348 156-500 (506)
46 COG0446 HcaD Uncharacterized N 100.0 1.6E-28 3.5E-33 234.7 27.9 253 2-259 71-327 (415)
47 KOG0405 Pyridine nucleotide-di 100.0 1.2E-28 2.6E-33 217.3 19.6 298 10-337 135-466 (478)
48 TIGR01292 TRX_reduct thioredox 100.0 5.5E-27 1.2E-31 214.8 22.8 209 5-239 77-297 (300)
49 PRK10262 thioredoxin reductase 100.0 3.7E-27 7.9E-32 218.3 19.3 214 5-239 83-311 (321)
50 TIGR03140 AhpF alkyl hydropero 100.0 4.1E-27 8.9E-32 230.7 19.3 214 2-240 285-510 (515)
51 TIGR01316 gltA glutamate synth 99.9 1.2E-26 2.6E-31 223.7 20.8 199 25-239 217-446 (449)
52 KOG2495 NADH-dehydrogenase (ub 99.9 1.4E-26 3E-31 209.8 15.6 223 2-239 126-393 (491)
53 PRK09853 putative selenate red 99.9 1.8E-25 3.8E-30 227.5 23.1 224 17-257 614-856 (1019)
54 PRK15317 alkyl hydroperoxide r 99.9 1.1E-25 2.4E-30 220.9 20.9 214 2-240 284-509 (517)
55 PRK12831 putative oxidoreducta 99.9 1.1E-25 2.3E-30 217.7 19.9 201 24-240 226-458 (464)
56 TIGR03143 AhpF_homolog putativ 99.9 2E-24 4.2E-29 213.4 22.9 211 3-239 78-305 (555)
57 COG0492 TrxB Thioredoxin reduc 99.9 1E-24 2.3E-29 197.8 18.6 207 5-239 81-297 (305)
58 PRK12770 putative glutamate sy 99.9 4.7E-24 1E-28 199.9 21.3 197 24-240 116-347 (352)
59 KOG4716 Thioredoxin reductase 99.9 1.7E-24 3.7E-29 190.5 16.4 294 24-337 159-482 (503)
60 PRK11749 dihydropyrimidine deh 99.9 3.3E-24 7.2E-29 207.6 19.4 199 25-240 224-449 (457)
61 PRK12778 putative bifunctional 99.9 3.7E-24 7.9E-29 218.7 19.7 208 16-240 507-747 (752)
62 PRK12779 putative bifunctional 99.9 2.4E-22 5.3E-27 207.3 25.3 209 15-240 381-624 (944)
63 PRK12810 gltD glutamate syntha 99.9 9.8E-23 2.1E-27 197.8 20.3 205 25-240 227-462 (471)
64 PRK12814 putative NADPH-depend 99.9 1.3E-22 2.8E-27 203.6 20.1 200 25-240 277-498 (652)
65 TIGR01318 gltD_gamma_fam gluta 99.9 3.5E-22 7.5E-27 193.5 21.8 200 25-240 225-463 (467)
66 TIGR03315 Se_ygfK putative sel 99.9 6.4E-22 1.4E-26 202.5 20.6 199 21-241 616-838 (1012)
67 PRK13984 putative oxidoreducta 99.9 1.4E-21 3.1E-26 195.5 21.9 198 25-240 367-599 (604)
68 PRK12769 putative oxidoreducta 99.9 3E-21 6.4E-26 194.5 23.8 200 25-240 411-649 (654)
69 PRK12775 putative trifunctiona 99.9 2.2E-21 4.8E-26 201.9 21.5 199 25-239 516-751 (1006)
70 TIGR01317 GOGAT_sm_gam glutama 99.9 3E-21 6.6E-26 187.7 21.1 205 25-240 227-476 (485)
71 PRK12809 putative oxidoreducta 99.9 2.2E-20 4.9E-25 187.4 19.6 200 25-240 394-632 (639)
72 TIGR01372 soxA sarcosine oxida 99.9 1.1E-19 2.5E-24 189.9 24.3 188 24-239 272-468 (985)
73 COG3634 AhpF Alkyl hydroperoxi 99.8 3.5E-20 7.5E-25 164.0 13.4 185 14-214 301-495 (520)
74 PLN02852 ferredoxin-NADP+ redu 99.8 5.4E-19 1.2E-23 170.0 20.0 206 25-239 113-418 (491)
75 PRK12771 putative glutamate sy 99.8 6.6E-19 1.4E-23 174.8 20.6 198 26-239 222-440 (564)
76 KOG0404 Thioredoxin reductase 99.8 3.4E-19 7.4E-24 148.8 12.0 195 4-210 89-295 (322)
77 KOG2755 Oxidoreductase [Genera 99.8 1.1E-17 2.3E-22 143.1 12.2 198 7-209 73-321 (334)
78 PLN02172 flavin-containing mon 99.7 8.4E-16 1.8E-20 148.2 17.0 211 1-244 130-354 (461)
79 KOG3851 Sulfide:quinone oxidor 99.7 2E-15 4.2E-20 132.7 13.5 225 3-239 110-357 (446)
80 PF07992 Pyr_redox_2: Pyridine 99.6 9E-15 1.9E-19 126.0 10.0 139 73-211 1-200 (201)
81 PF00070 Pyr_redox: Pyridine n 99.6 3.4E-14 7.4E-19 103.7 10.9 80 73-155 1-80 (80)
82 PF00743 FMO-like: Flavin-bind 99.5 2.9E-13 6.3E-18 132.5 15.7 220 1-243 103-397 (531)
83 COG0493 GltD NADPH-dependent g 99.5 3.1E-13 6.8E-18 129.1 11.6 204 26-239 208-447 (457)
84 PF13434 K_oxygenase: L-lysine 99.4 2.2E-12 4.8E-17 119.8 10.1 164 2-170 113-340 (341)
85 COG3486 IucD Lysine/ornithine 99.4 9.5E-11 2.1E-15 107.2 19.8 206 1-210 114-388 (436)
86 PRK06567 putative bifunctional 99.3 2E-11 4.3E-16 124.2 14.5 149 24-176 495-733 (1028)
87 KOG0399 Glutamate synthase [Am 99.3 2.2E-11 4.7E-16 122.0 10.2 203 25-238 1869-2115(2142)
88 PRK05329 anaerobic glycerol-3- 99.2 3.4E-10 7.4E-15 107.7 15.6 159 74-240 218-418 (422)
89 PF13738 Pyr_redox_3: Pyridine 99.1 1.9E-10 4E-15 99.2 7.0 97 2-105 100-201 (203)
90 PF14759 Reductase_C: Reductas 99.0 2.1E-09 4.5E-14 79.0 9.9 79 251-337 1-82 (85)
91 TIGR01292 TRX_reduct thioredox 99.0 6.4E-09 1.4E-13 95.1 13.1 99 73-174 2-115 (300)
92 COG2081 Predicted flavoprotein 98.9 1.9E-08 4.1E-13 92.4 14.0 111 71-183 3-188 (408)
93 PRK09754 phenylpropionate diox 98.8 8E-08 1.7E-12 91.7 12.0 99 71-173 3-114 (396)
94 PF03486 HI0933_like: HI0933-l 98.7 1.1E-07 2.5E-12 90.3 11.6 109 73-182 2-186 (409)
95 TIGR00292 thiazole biosynthesi 98.7 1.5E-06 3.2E-11 77.6 17.7 165 71-240 21-251 (254)
96 TIGR03140 AhpF alkyl hydropero 98.7 2.2E-07 4.8E-12 91.6 13.7 101 70-172 211-324 (515)
97 PF13738 Pyr_redox_3: Pyridine 98.7 1.3E-07 2.8E-12 81.4 10.3 98 75-174 1-143 (203)
98 PRK04176 ribulose-1,5-biphosph 98.7 1E-06 2.2E-11 78.8 16.2 164 71-240 25-252 (257)
99 PRK15317 alkyl hydroperoxide r 98.7 3E-07 6.5E-12 90.7 13.9 100 71-172 211-323 (517)
100 PRK09564 coenzyme A disulfide 98.7 2.6E-07 5.7E-12 89.5 12.4 102 72-175 1-119 (444)
101 KOG1800 Ferredoxin/adrenodoxin 98.6 6.2E-08 1.3E-12 88.0 6.7 66 25-91 107-179 (468)
102 PLN02172 flavin-containing mon 98.6 3.1E-06 6.7E-11 82.1 18.0 103 70-174 9-178 (461)
103 TIGR03169 Nterm_to_SelD pyridi 98.6 2.6E-07 5.6E-12 87.1 10.3 97 73-174 1-110 (364)
104 COG4529 Uncharacterized protei 98.6 2.5E-06 5.4E-11 80.6 16.5 227 3-239 125-459 (474)
105 PRK06847 hypothetical protein; 98.6 8.4E-07 1.8E-11 83.9 13.3 102 70-173 3-165 (375)
106 PTZ00318 NADH dehydrogenase-li 98.6 3.9E-07 8.4E-12 87.7 11.2 100 69-173 8-127 (424)
107 COG2072 TrkA Predicted flavopr 98.5 1.7E-07 3.6E-12 90.4 7.7 100 2-105 102-209 (443)
108 PTZ00188 adrenodoxin reductase 98.5 2.3E-06 5E-11 82.2 15.1 101 126-238 324-439 (506)
109 TIGR02374 nitri_red_nirB nitri 98.5 3.9E-07 8.4E-12 94.1 10.6 98 74-175 1-112 (785)
110 COG1148 HdrA Heterodisulfide r 98.5 3.2E-06 6.9E-11 79.3 15.1 179 24-211 298-524 (622)
111 PRK14989 nitrite reductase sub 98.5 6.4E-07 1.4E-11 92.7 11.4 102 71-176 3-118 (847)
112 COG1252 Ndh NADH dehydrogenase 98.5 6.5E-07 1.4E-11 84.1 9.9 99 70-173 2-113 (405)
113 KOG1399 Flavin-containing mono 98.5 3.5E-07 7.6E-12 87.4 7.8 159 1-180 109-278 (448)
114 PF01134 GIDA: Glucose inhibit 98.5 1.4E-06 3E-11 81.5 11.4 95 73-169 1-150 (392)
115 PRK12779 putative bifunctional 98.5 6.4E-07 1.4E-11 93.7 10.1 93 70-172 305-406 (944)
116 PRK13512 coenzyme A disulfide 98.5 1.3E-06 2.9E-11 84.4 11.2 101 72-174 2-120 (438)
117 PRK12770 putative glutamate sy 98.5 7.2E-07 1.6E-11 83.8 9.1 103 69-172 16-132 (352)
118 PRK07236 hypothetical protein; 98.4 1.8E-06 4E-11 82.1 11.6 102 70-173 5-156 (386)
119 PF01266 DAO: FAD dependent ox 98.4 1.4E-06 3E-11 81.3 10.4 65 114-181 148-212 (358)
120 PRK09853 putative selenate red 98.4 1.6E-06 3.5E-11 89.9 11.4 91 70-172 538-636 (1019)
121 TIGR02032 GG-red-SF geranylger 98.4 4.8E-06 1E-10 75.7 12.9 97 73-171 2-148 (295)
122 PRK04965 NADH:flavorubredoxin 98.4 2.5E-06 5.5E-11 80.8 11.4 98 72-174 3-114 (377)
123 PRK11749 dihydropyrimidine deh 98.4 1.2E-06 2.6E-11 85.2 9.3 90 70-170 139-236 (457)
124 PRK06834 hypothetical protein; 98.4 6.2E-06 1.3E-10 80.8 13.4 100 72-173 4-158 (488)
125 PRK10262 thioredoxin reductase 98.4 8.7E-06 1.9E-10 75.4 13.7 100 70-173 5-119 (321)
126 COG0492 TrxB Thioredoxin reduc 98.4 2.7E-05 5.8E-10 71.2 16.5 98 72-173 4-117 (305)
127 PLN02463 lycopene beta cyclase 98.4 5E-06 1.1E-10 80.2 12.4 98 72-172 29-170 (447)
128 PRK08773 2-octaprenyl-3-methyl 98.3 5.9E-06 1.3E-10 78.7 12.7 100 71-172 6-170 (392)
129 PRK07045 putative monooxygenas 98.3 8.3E-06 1.8E-10 77.6 13.5 102 71-172 5-166 (388)
130 TIGR01316 gltA glutamate synth 98.3 1.8E-06 4E-11 83.7 8.9 92 70-172 132-232 (449)
131 TIGR01424 gluta_reduc_2 glutat 98.3 4.7E-06 1E-10 80.8 11.7 96 72-174 3-145 (446)
132 PRK08163 salicylate hydroxylas 98.3 9.2E-06 2E-10 77.4 12.9 102 70-173 3-168 (396)
133 PRK12831 putative oxidoreducta 98.3 2.2E-06 4.8E-11 83.4 8.7 93 70-172 139-242 (464)
134 TIGR03143 AhpF_homolog putativ 98.3 1.1E-05 2.3E-10 80.4 13.7 98 72-174 5-117 (555)
135 PRK08244 hypothetical protein; 98.3 1E-05 2.2E-10 79.5 13.1 101 72-172 3-160 (493)
136 PLN02852 ferredoxin-NADP+ redu 98.3 3.2E-06 7E-11 82.1 8.8 92 70-172 25-127 (491)
137 PTZ00188 adrenodoxin reductase 98.3 6.9E-06 1.5E-10 79.0 10.7 92 70-172 38-139 (506)
138 PRK07588 hypothetical protein; 98.3 1.2E-05 2.6E-10 76.5 12.4 98 73-173 2-160 (391)
139 PRK07333 2-octaprenyl-6-methox 98.3 1.3E-05 2.7E-10 76.7 12.5 106 73-182 3-176 (403)
140 PRK07845 flavoprotein disulfid 98.2 1.6E-05 3.5E-10 77.5 13.3 101 72-173 2-153 (466)
141 PRK06116 glutathione reductase 98.2 6.9E-06 1.5E-10 79.8 10.7 95 72-175 5-147 (450)
142 PRK12778 putative bifunctional 98.2 4.2E-06 9E-11 86.4 9.5 93 70-172 430-531 (752)
143 COG0654 UbiH 2-polyprenyl-6-me 98.2 1.8E-05 4E-10 75.2 13.1 100 71-172 2-163 (387)
144 PRK10157 putative oxidoreducta 98.2 2.2E-05 4.7E-10 75.7 13.7 107 72-182 6-173 (428)
145 COG0579 Predicted dehydrogenas 98.2 1.8E-05 3.9E-10 75.0 12.6 68 114-183 154-222 (429)
146 TIGR01318 gltD_gamma_fam gluta 98.2 4.5E-06 9.8E-11 81.3 8.7 92 70-172 140-239 (467)
147 PRK05868 hypothetical protein; 98.2 1.8E-05 3.9E-10 74.9 12.2 100 72-173 2-162 (372)
148 TIGR01317 GOGAT_sm_gam glutama 98.2 6.1E-06 1.3E-10 80.7 9.0 92 70-172 142-242 (485)
149 PF04820 Trp_halogenase: Trypt 98.2 2E-05 4.4E-10 76.4 12.4 58 114-172 155-212 (454)
150 PRK05976 dihydrolipoamide dehy 98.2 1.7E-05 3.8E-10 77.4 12.1 100 71-172 4-155 (472)
151 PRK06184 hypothetical protein; 98.2 2.6E-05 5.6E-10 76.9 13.2 99 72-172 4-169 (502)
152 TIGR03315 Se_ygfK putative sel 98.2 8E-06 1.7E-10 85.2 9.9 90 71-172 537-634 (1012)
153 PRK09126 hypothetical protein; 98.2 2.4E-05 5.2E-10 74.5 12.5 100 72-173 4-169 (392)
154 PRK05714 2-octaprenyl-3-methyl 98.2 2.4E-05 5.2E-10 74.9 12.4 99 72-172 3-169 (405)
155 PRK01438 murD UDP-N-acetylmura 98.2 9.2E-06 2E-10 79.6 9.7 82 70-177 15-96 (480)
156 PF01494 FAD_binding_3: FAD bi 98.2 1.7E-05 3.7E-10 73.9 11.1 100 73-172 3-173 (356)
157 TIGR01984 UbiH 2-polyprenyl-6- 98.2 2.6E-05 5.7E-10 73.9 12.5 97 73-171 1-162 (382)
158 PRK07364 2-octaprenyl-6-methox 98.2 2.9E-05 6.3E-10 74.5 12.9 101 71-173 18-183 (415)
159 TIGR01988 Ubi-OHases Ubiquinon 98.2 2.9E-05 6.3E-10 73.6 12.7 98 73-172 1-164 (385)
160 PRK08010 pyridine nucleotide-d 98.1 2.6E-05 5.6E-10 75.6 12.3 98 72-174 4-134 (441)
161 PRK07608 ubiquinone biosynthes 98.1 3.1E-05 6.7E-10 73.6 12.6 98 72-172 6-168 (388)
162 PRK08013 oxidoreductase; Provi 98.1 2.8E-05 6.2E-10 74.3 12.3 99 72-172 4-169 (400)
163 PRK05249 soluble pyridine nucl 98.1 2.6E-05 5.6E-10 76.0 12.2 98 72-174 6-152 (461)
164 PRK12775 putative trifunctiona 98.1 8.7E-06 1.9E-10 86.0 9.4 93 70-172 429-531 (1006)
165 PF00743 FMO-like: Flavin-bind 98.1 4E-05 8.7E-10 75.5 13.4 138 71-208 1-193 (531)
166 PRK09897 hypothetical protein; 98.1 0.00025 5.4E-09 69.9 18.8 83 3-93 128-213 (534)
167 PRK07190 hypothetical protein; 98.1 4.2E-05 9.1E-10 74.9 13.1 98 72-171 6-165 (487)
168 PRK07251 pyridine nucleotide-d 98.1 3.1E-05 6.6E-10 75.0 11.9 98 72-174 4-133 (438)
169 PLN02697 lycopene epsilon cycl 98.1 4.1E-05 8.8E-10 75.3 12.7 98 72-171 109-248 (529)
170 COG1635 THI4 Ribulose 1,5-bisp 98.1 7.2E-05 1.6E-09 63.6 12.3 165 70-240 29-257 (262)
171 PRK06467 dihydrolipoamide dehy 98.1 3.8E-05 8.2E-10 75.0 12.4 97 71-172 4-149 (471)
172 PRK08849 2-octaprenyl-3-methyl 98.1 4.3E-05 9.4E-10 72.6 12.4 101 72-174 4-170 (384)
173 PRK08020 ubiF 2-octaprenyl-3-m 98.1 4.6E-05 9.9E-10 72.5 12.6 100 71-172 5-170 (391)
174 PRK06753 hypothetical protein; 98.1 3.3E-05 7.1E-10 73.0 11.5 99 73-173 2-154 (373)
175 PRK12809 putative oxidoreducta 98.1 1.1E-05 2.3E-10 81.7 8.5 92 70-172 309-408 (639)
176 PRK08850 2-octaprenyl-6-methox 98.1 4.5E-05 9.8E-10 73.0 12.2 100 71-172 4-169 (405)
177 PRK12810 gltD glutamate syntha 98.1 1.4E-05 2.9E-10 78.1 8.6 91 70-171 142-240 (471)
178 PRK08132 FAD-dependent oxidore 98.1 6E-05 1.3E-09 75.1 13.3 103 71-173 23-187 (547)
179 PRK06183 mhpA 3-(3-hydroxyphen 98.1 5.6E-05 1.2E-09 75.1 13.0 101 71-173 10-176 (538)
180 TIGR01790 carotene-cycl lycope 98.1 5.6E-05 1.2E-09 71.9 12.5 97 73-171 1-141 (388)
181 PRK11728 hydroxyglutarate oxid 98.0 7.3E-05 1.6E-09 71.3 12.8 59 119-181 155-213 (393)
182 PRK05192 tRNA uridine 5-carbox 98.0 4.9E-05 1.1E-09 75.2 11.7 96 72-169 5-155 (618)
183 PRK06617 2-octaprenyl-6-methox 98.0 6.9E-05 1.5E-09 70.9 12.1 98 73-173 3-162 (374)
184 PRK06475 salicylate hydroxylas 98.0 9.9E-05 2.1E-09 70.6 13.3 99 72-172 3-168 (400)
185 PRK12814 putative NADPH-depend 98.0 2E-05 4.4E-10 79.9 8.5 92 70-172 192-291 (652)
186 PRK06185 hypothetical protein; 98.0 0.00011 2.4E-09 70.4 13.2 101 71-172 6-170 (407)
187 PRK06416 dihydrolipoamide dehy 98.0 6.7E-05 1.5E-09 73.1 11.9 95 72-172 5-147 (462)
188 PRK07494 2-octaprenyl-6-methox 98.0 8.9E-05 1.9E-09 70.5 12.4 99 71-172 7-168 (388)
189 TIGR01421 gluta_reduc_1 glutat 98.0 6.1E-05 1.3E-09 73.1 11.3 94 72-174 3-144 (450)
190 PRK06370 mercuric reductase; V 98.0 5E-05 1.1E-09 74.1 10.7 95 71-174 5-148 (463)
191 PRK12769 putative oxidoreducta 98.0 2.2E-05 4.7E-10 79.8 8.4 91 70-171 326-424 (654)
192 TIGR03378 glycerol3P_GlpB glyc 98.0 0.00036 7.8E-09 66.3 15.8 152 77-238 230-418 (419)
193 PRK05732 2-octaprenyl-6-methox 98.0 0.00011 2.3E-09 70.1 12.5 106 72-181 4-177 (395)
194 PRK10015 oxidoreductase; Provi 98.0 0.00012 2.7E-09 70.5 12.9 98 72-171 6-164 (429)
195 KOG1399 Flavin-containing mono 98.0 0.00021 4.5E-09 68.6 14.1 136 70-206 5-194 (448)
196 PRK06115 dihydrolipoamide dehy 98.0 8.2E-05 1.8E-09 72.6 11.8 96 72-172 4-149 (466)
197 TIGR00136 gidA glucose-inhibit 97.9 0.00011 2.4E-09 72.6 12.4 98 73-171 2-154 (617)
198 COG0644 FixC Dehydrogenases (f 97.9 0.00014 3E-09 69.5 12.9 108 72-182 4-161 (396)
199 PLN02661 Putative thiazole syn 97.9 0.00034 7.5E-09 64.7 14.7 164 71-240 92-325 (357)
200 PRK09897 hypothetical protein; 97.9 0.00017 3.6E-09 71.1 13.4 99 72-172 2-167 (534)
201 COG2072 TrkA Predicted flavopr 97.9 0.00078 1.7E-08 65.2 17.4 138 70-209 7-186 (443)
202 TIGR01789 lycopene_cycl lycope 97.9 7E-05 1.5E-09 70.7 10.0 94 73-172 1-139 (370)
203 TIGR01372 soxA sarcosine oxida 97.9 0.00016 3.4E-09 76.8 13.6 101 71-173 163-288 (985)
204 TIGR01377 soxA_mon sarcosine o 97.9 0.00017 3.8E-09 68.2 12.7 59 118-180 150-208 (380)
205 TIGR00275 flavoprotein, HI0933 97.9 0.00013 2.8E-09 69.8 11.5 94 75-171 1-160 (400)
206 PRK06126 hypothetical protein; 97.9 0.00018 3.9E-09 71.7 13.0 102 71-172 7-189 (545)
207 TIGR02053 MerA mercuric reduct 97.9 0.00012 2.6E-09 71.4 11.5 94 73-174 2-143 (463)
208 KOG1336 Monodehydroascorbate/f 97.9 7E-05 1.5E-09 70.6 9.2 100 70-173 73-183 (478)
209 PF12831 FAD_oxidored: FAD dep 97.9 1.2E-05 2.7E-10 77.4 4.2 107 73-183 1-159 (428)
210 TIGR01989 COQ6 Ubiquinone bios 97.9 0.00021 4.5E-09 69.2 12.5 101 73-173 2-185 (437)
211 TIGR03219 salicylate_mono sali 97.8 0.0002 4.4E-09 68.7 12.1 98 73-172 2-160 (414)
212 COG3075 GlpB Anaerobic glycero 97.8 0.00016 3.4E-09 65.1 10.2 103 111-214 256-393 (421)
213 PRK08243 4-hydroxybenzoate 3-m 97.8 0.00031 6.6E-09 67.0 13.2 101 72-173 3-165 (392)
214 PRK13748 putative mercuric red 97.8 0.00027 5.9E-09 70.7 13.3 98 72-175 99-248 (561)
215 PRK06996 hypothetical protein; 97.8 0.00021 4.6E-09 68.2 12.0 99 70-170 10-173 (398)
216 PLN02546 glutathione reductase 97.8 0.00013 2.8E-09 72.4 10.6 95 72-174 80-231 (558)
217 PF05834 Lycopene_cycl: Lycope 97.8 0.00023 5E-09 67.4 11.8 97 73-172 1-143 (374)
218 PRK13984 putative oxidoreducta 97.8 6.6E-05 1.4E-09 75.7 8.4 91 70-171 282-380 (604)
219 KOG2495 NADH-dehydrogenase (ub 97.8 0.00015 3.3E-09 67.4 9.8 102 70-173 54-172 (491)
220 PRK11259 solA N-methyltryptoph 97.8 0.00038 8.2E-09 65.8 12.9 47 123-172 159-205 (376)
221 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 3.8E-05 8.2E-10 73.1 5.8 34 73-106 2-35 (433)
222 TIGR01373 soxB sarcosine oxida 97.8 0.00047 1E-08 66.0 13.4 52 118-170 188-239 (407)
223 PRK14694 putative mercuric red 97.8 0.00035 7.5E-09 68.3 12.4 100 71-176 6-157 (468)
224 PRK06481 fumarate reductase fl 97.7 0.00044 9.5E-09 68.2 13.1 107 71-178 61-259 (506)
225 PTZ00058 glutathione reductase 97.7 0.00036 7.9E-09 69.3 12.5 32 72-103 49-80 (561)
226 TIGR01813 flavo_cyto_c flavocy 97.7 0.00041 9E-09 67.1 12.7 64 115-178 132-200 (439)
227 PRK07538 hypothetical protein; 97.7 0.00036 7.8E-09 67.0 12.2 98 73-172 2-166 (413)
228 PRK12771 putative glutamate sy 97.7 9.4E-05 2E-09 73.9 8.4 92 69-172 135-235 (564)
229 TIGR01350 lipoamide_DH dihydro 97.7 0.00029 6.2E-09 68.7 11.5 95 73-173 3-145 (461)
230 PRK06327 dihydrolipoamide dehy 97.7 0.00048 1E-08 67.4 12.8 100 72-172 5-158 (475)
231 PF13454 NAD_binding_9: FAD-NA 97.7 0.00044 9.6E-09 56.9 10.7 93 75-169 1-155 (156)
232 PF07992 Pyr_redox_2: Pyridine 97.7 1.4E-05 3.1E-10 68.4 1.8 73 3-78 77-159 (201)
233 PRK06567 putative bifunctional 97.7 8.4E-05 1.8E-09 76.8 7.5 35 69-103 381-415 (1028)
234 TIGR02360 pbenz_hydroxyl 4-hyd 97.7 0.0005 1.1E-08 65.5 12.3 100 72-172 3-164 (390)
235 COG0493 GltD NADPH-dependent g 97.7 6.5E-05 1.4E-09 72.4 6.2 92 70-172 122-222 (457)
236 PRK06912 acoL dihydrolipoamide 97.7 0.00049 1.1E-08 67.0 12.4 96 73-173 2-146 (458)
237 PLN02507 glutathione reductase 97.7 0.00058 1.3E-08 67.2 12.8 99 72-175 26-183 (499)
238 KOG0404 Thioredoxin reductase 97.7 0.00033 7.2E-09 59.7 9.4 99 71-173 8-126 (322)
239 TIGR03329 Phn_aa_oxid putative 97.7 0.0005 1.1E-08 67.0 12.1 48 119-170 189-236 (460)
240 COG1251 NirB NAD(P)H-nitrite r 97.7 0.0003 6.6E-09 69.7 10.4 104 71-178 3-120 (793)
241 TIGR02023 BchP-ChlP geranylger 97.7 0.00068 1.5E-08 64.5 12.7 97 73-172 2-156 (388)
242 TIGR02028 ChlP geranylgeranyl 97.7 0.00077 1.7E-08 64.4 13.0 99 73-172 2-161 (398)
243 TIGR03364 HpnW_proposed FAD de 97.6 0.00065 1.4E-08 64.0 12.1 31 73-103 2-32 (365)
244 COG0445 GidA Flavin-dependent 97.6 0.00016 3.5E-09 69.3 7.7 98 72-170 5-157 (621)
245 KOG0399 Glutamate synthase [Am 97.6 0.00014 3E-09 74.6 7.5 91 70-171 1784-1882(2142)
246 PRK01747 mnmC bifunctional tRN 97.6 0.00052 1.1E-08 70.0 11.8 32 72-103 261-292 (662)
247 PTZ00383 malate:quinone oxidor 97.6 0.00092 2E-08 65.4 12.9 65 115-182 213-283 (497)
248 PF01946 Thi4: Thi4 family; PD 97.6 0.00078 1.7E-08 57.6 10.6 104 70-173 16-167 (230)
249 PRK14727 putative mercuric red 97.6 0.00065 1.4E-08 66.6 11.6 101 71-176 16-167 (479)
250 PRK11101 glpA sn-glycerol-3-ph 97.6 0.00077 1.7E-08 67.1 12.2 32 72-103 7-38 (546)
251 PRK11445 putative oxidoreducta 97.6 0.0011 2.5E-08 62.1 12.6 96 73-172 3-158 (351)
252 PRK12409 D-amino acid dehydrog 97.6 0.0015 3.2E-08 62.7 13.3 33 72-104 2-34 (410)
253 PRK07818 dihydrolipoamide dehy 97.5 0.00067 1.4E-08 66.2 11.0 32 72-103 5-36 (466)
254 PF00890 FAD_binding_2: FAD bi 97.5 0.00088 1.9E-08 64.3 11.5 59 113-172 141-204 (417)
255 PLN02464 glycerol-3-phosphate 97.5 0.0015 3.3E-08 66.0 13.3 34 70-103 70-103 (627)
256 PRK06292 dihydrolipoamide dehy 97.5 0.00071 1.5E-08 65.9 10.6 32 72-103 4-35 (460)
257 PRK08274 tricarballylate dehyd 97.5 0.0015 3.3E-08 63.7 12.8 105 72-177 5-199 (466)
258 PRK07804 L-aspartate oxidase; 97.5 0.0015 3.2E-08 65.0 12.5 99 72-170 17-209 (541)
259 PLN00093 geranylgeranyl diphos 97.5 0.0019 4.2E-08 62.6 12.9 101 70-171 38-199 (450)
260 TIGR01438 TGR thioredoxin and 97.5 0.0016 3.4E-08 63.9 12.3 97 73-174 4-158 (484)
261 PRK08401 L-aspartate oxidase; 97.5 0.0018 3.9E-08 63.2 12.6 97 72-171 2-175 (466)
262 COG3380 Predicted NAD/FAD-depe 97.5 0.00056 1.2E-08 60.1 7.9 100 73-176 3-165 (331)
263 PRK00711 D-amino acid dehydrog 97.4 0.0024 5.1E-08 61.3 13.2 56 121-179 209-264 (416)
264 PRK07121 hypothetical protein; 97.4 0.0024 5.2E-08 62.8 13.1 61 117-177 181-246 (492)
265 PF14721 AIF_C: Apoptosis-indu 97.4 0.00099 2.2E-08 51.2 7.5 32 287-319 100-131 (133)
266 TIGR02485 CobZ_N-term precorri 97.4 0.0024 5.2E-08 61.7 12.2 63 116-178 126-191 (432)
267 PRK07846 mycothione reductase; 97.4 0.00082 1.8E-08 65.3 8.8 94 73-175 3-144 (451)
268 PRK13977 myosin-cross-reactive 97.4 0.0036 7.8E-08 61.7 13.2 58 114-171 227-293 (576)
269 PLN02985 squalene monooxygenas 97.3 0.0029 6.4E-08 62.4 12.7 33 71-103 43-75 (514)
270 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00068 1.5E-08 61.5 7.4 102 70-171 210-325 (520)
271 TIGR01812 sdhA_frdA_Gneg succi 97.3 0.0031 6.8E-08 63.1 13.0 51 119-170 135-190 (566)
272 COG1148 HdrA Heterodisulfide r 97.3 0.00056 1.2E-08 64.6 7.0 71 71-141 124-206 (622)
273 COG0665 DadA Glycine/D-amino a 97.3 0.0039 8.5E-08 59.0 13.1 34 70-103 3-36 (387)
274 KOG2820 FAD-dependent oxidored 97.3 0.0033 7.1E-08 57.0 11.2 58 115-172 155-213 (399)
275 PRK08294 phenol 2-monooxygenas 97.3 0.0032 6.9E-08 63.8 12.2 103 70-172 31-211 (634)
276 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.0023 5E-08 61.8 10.4 99 71-174 4-150 (454)
277 COG2509 Uncharacterized FAD-de 97.2 0.0033 7.1E-08 59.3 10.8 95 89-184 149-246 (486)
278 PRK09078 sdhA succinate dehydr 97.2 0.0048 1E-07 62.1 12.9 56 116-171 152-212 (598)
279 PTZ00139 Succinate dehydrogena 97.2 0.0048 1E-07 62.3 12.9 56 115-170 168-228 (617)
280 TIGR01811 sdhA_Bsu succinate d 97.2 0.0042 9.1E-08 62.5 12.5 44 127-170 147-195 (603)
281 PRK08275 putative oxidoreducta 97.2 0.0061 1.3E-07 60.9 13.5 57 115-171 139-200 (554)
282 PTZ00052 thioredoxin reductase 97.2 0.0013 2.8E-08 64.8 8.3 31 72-102 6-36 (499)
283 PRK13369 glycerol-3-phosphate 97.2 0.0046 9.9E-08 61.0 12.2 32 72-103 7-38 (502)
284 KOG2311 NAD/FAD-utilizing prot 97.2 0.0013 2.9E-08 62.0 7.7 33 71-103 28-60 (679)
285 PF06039 Mqo: Malate:quinone o 97.2 0.006 1.3E-07 58.0 11.8 89 117-207 185-290 (488)
286 PRK08958 sdhA succinate dehydr 97.2 0.0066 1.4E-07 61.0 13.0 56 116-171 146-206 (588)
287 COG4529 Uncharacterized protei 97.1 0.0061 1.3E-07 58.1 11.8 101 72-173 2-166 (474)
288 PLN02927 antheraxanthin epoxid 97.1 0.0067 1.5E-07 61.2 12.7 36 69-104 79-114 (668)
289 PRK06263 sdhA succinate dehydr 97.1 0.006 1.3E-07 60.8 12.3 55 116-170 137-196 (543)
290 PRK06452 sdhA succinate dehydr 97.1 0.0062 1.3E-07 60.9 12.2 53 116-169 139-196 (566)
291 TIGR00551 nadB L-aspartate oxi 97.1 0.0055 1.2E-07 60.2 11.6 57 114-171 129-189 (488)
292 PF13450 NAD_binding_8: NAD(P) 97.1 0.00088 1.9E-08 46.8 4.3 33 76-108 1-33 (68)
293 PRK07573 sdhA succinate dehydr 97.1 0.0076 1.6E-07 61.1 12.7 51 119-170 176-231 (640)
294 TIGR01423 trypano_reduc trypan 97.1 0.0037 8E-08 61.3 10.1 31 72-102 4-35 (486)
295 PRK06854 adenylylsulfate reduc 97.1 0.0096 2.1E-07 60.1 13.3 32 72-103 12-45 (608)
296 PLN00128 Succinate dehydrogena 97.0 0.0094 2E-07 60.4 12.9 55 117-171 191-250 (635)
297 TIGR03452 mycothione_red mycot 97.0 0.0025 5.5E-08 61.9 8.5 30 72-103 3-32 (452)
298 PRK06175 L-aspartate oxidase; 97.0 0.008 1.7E-07 58.1 11.9 55 115-170 130-188 (433)
299 PRK08255 salicylyl-CoA 5-hydro 97.0 0.0021 4.5E-08 66.7 8.1 33 73-105 2-36 (765)
300 PRK12266 glpD glycerol-3-phosp 97.0 0.009 2E-07 59.0 12.2 33 71-103 6-38 (508)
301 PRK14106 murD UDP-N-acetylmura 97.0 0.0032 7E-08 61.1 9.0 82 70-176 4-85 (450)
302 PRK05945 sdhA succinate dehydr 97.0 0.011 2.4E-07 59.2 12.8 56 115-171 137-197 (575)
303 PRK07057 sdhA succinate dehydr 97.0 0.014 2.9E-07 58.8 13.2 32 72-103 13-44 (591)
304 PRK07803 sdhA succinate dehydr 96.9 0.012 2.7E-07 59.5 12.8 32 72-103 9-40 (626)
305 PRK12835 3-ketosteroid-delta-1 96.9 0.013 2.8E-07 58.9 12.7 59 120-178 220-283 (584)
306 KOG2614 Kynurenine 3-monooxyge 96.9 0.0034 7.3E-08 58.6 7.5 34 71-104 2-35 (420)
307 PRK08205 sdhA succinate dehydr 96.9 0.019 4.1E-07 57.7 13.4 57 115-171 142-206 (583)
308 PRK13339 malate:quinone oxidor 96.8 0.026 5.5E-07 55.3 13.6 62 119-182 190-257 (497)
309 PTZ00153 lipoamide dehydrogena 96.8 0.015 3.3E-07 58.9 12.2 31 73-103 118-148 (659)
310 PRK06069 sdhA succinate dehydr 96.8 0.019 4.1E-07 57.7 12.8 32 72-103 6-40 (577)
311 PRK08641 sdhA succinate dehydr 96.8 0.016 3.4E-07 58.3 12.1 32 72-103 4-35 (589)
312 KOG3851 Sulfide:quinone oxidor 96.7 0.00074 1.6E-08 60.6 1.8 104 70-179 38-153 (446)
313 TIGR01470 cysG_Nterm siroheme 96.7 0.0036 7.9E-08 53.9 6.1 107 70-208 8-120 (205)
314 PRK12843 putative FAD-binding 96.7 0.027 5.7E-07 56.6 12.6 60 118-178 226-290 (578)
315 PRK07395 L-aspartate oxidase; 96.6 0.013 2.9E-07 58.3 10.2 32 71-103 9-40 (553)
316 PRK05335 tRNA (uracil-5-)-meth 96.6 0.003 6.4E-08 60.1 5.1 35 72-106 3-37 (436)
317 KOG2755 Oxidoreductase [Genera 96.6 0.002 4.3E-08 56.4 3.5 92 73-172 1-105 (334)
318 PRK08071 L-aspartate oxidase; 96.6 0.018 3.9E-07 56.9 10.7 31 72-103 4-34 (510)
319 KOG2404 Fumarate reductase, fl 96.6 0.018 3.9E-07 52.1 9.4 52 127-179 159-216 (477)
320 PRK08626 fumarate reductase fl 96.6 0.035 7.5E-07 56.6 12.7 50 119-169 164-218 (657)
321 PRK07843 3-ketosteroid-delta-1 96.5 0.0038 8.3E-08 62.3 5.7 107 70-178 159-277 (557)
322 PLN02815 L-aspartate oxidase 96.5 0.022 4.7E-07 57.3 11.0 31 72-103 30-60 (594)
323 PF02852 Pyr_redox_dim: Pyridi 96.5 0.0063 1.4E-07 46.8 5.6 56 288-343 50-110 (110)
324 PRK06134 putative FAD-binding 96.5 0.037 8.1E-07 55.6 12.6 54 118-172 222-279 (581)
325 COG0578 GlpA Glycerol-3-phosph 96.5 0.027 5.9E-07 55.0 10.9 34 70-103 11-44 (532)
326 KOG2852 Possible oxidoreductas 96.5 0.009 1.9E-07 53.1 6.7 34 70-103 9-48 (380)
327 PRK12842 putative succinate de 96.4 0.0066 1.4E-07 60.9 6.7 104 68-172 154-276 (574)
328 COG2907 Predicted NAD/FAD-bind 96.4 0.021 4.6E-07 52.2 8.9 33 70-103 7-39 (447)
329 PRK09231 fumarate reductase fl 96.4 0.045 9.8E-07 55.0 12.3 31 73-103 6-38 (582)
330 PRK07512 L-aspartate oxidase; 96.4 0.026 5.7E-07 55.8 10.3 55 115-170 138-196 (513)
331 TIGR01176 fum_red_Fp fumarate 96.4 0.052 1.1E-06 54.5 12.5 31 73-103 5-37 (580)
332 TIGR02061 aprA adenosine phosp 96.3 0.076 1.7E-06 53.5 13.4 31 73-103 1-35 (614)
333 KOG1298 Squalene monooxygenase 96.2 0.022 4.9E-07 52.7 8.2 34 70-103 44-77 (509)
334 PF02558 ApbA: Ketopantoate re 96.2 0.011 2.4E-07 48.0 5.6 84 74-178 1-86 (151)
335 PTZ00306 NADH-dependent fumara 96.2 0.058 1.2E-06 58.7 12.4 31 73-103 411-441 (1167)
336 COG0446 HcaD Uncharacterized N 96.2 0.036 7.7E-07 52.7 9.8 96 74-174 1-109 (415)
337 TIGR03385 CoA_CoA_reduc CoA-di 96.1 0.032 6.9E-07 53.8 9.5 88 86-175 2-107 (427)
338 PRK09077 L-aspartate oxidase; 96.1 0.081 1.8E-06 52.7 12.3 31 72-103 9-39 (536)
339 PRK01710 murD UDP-N-acetylmura 96.1 0.029 6.2E-07 54.7 8.9 89 63-177 7-95 (458)
340 PRK02705 murD UDP-N-acetylmura 96.1 0.021 4.6E-07 55.6 8.0 85 73-177 2-86 (459)
341 KOG0029 Amine oxidase [Seconda 96.1 0.009 2E-07 58.5 5.2 39 70-108 14-52 (501)
342 PRK12839 hypothetical protein; 96.0 0.092 2E-06 52.7 12.4 59 119-177 220-283 (572)
343 COG0029 NadB Aspartate oxidase 96.0 0.036 7.8E-07 53.1 8.5 30 73-103 9-38 (518)
344 PRK12837 3-ketosteroid-delta-1 95.9 0.1 2.2E-06 51.6 12.1 32 71-103 7-38 (513)
345 KOG2415 Electron transfer flav 95.9 0.069 1.5E-06 50.1 9.6 104 70-173 75-258 (621)
346 PRK12844 3-ketosteroid-delta-1 95.9 0.14 3.1E-06 51.1 12.8 32 72-103 7-38 (557)
347 PRK11883 protoporphyrinogen ox 95.8 0.013 2.7E-07 56.8 5.1 35 72-106 1-37 (451)
348 PF13434 K_oxygenase: L-lysine 95.8 0.021 4.5E-07 53.4 6.1 102 73-174 4-162 (341)
349 PRK07233 hypothetical protein; 95.7 0.013 2.9E-07 56.3 4.9 35 73-107 1-35 (434)
350 COG3349 Uncharacterized conser 95.7 0.014 3E-07 56.1 4.8 36 72-107 1-36 (485)
351 PRK12834 putative FAD-binding 95.7 0.17 3.6E-06 50.6 12.6 33 72-104 5-37 (549)
352 PRK12845 3-ketosteroid-delta-1 95.7 0.12 2.5E-06 51.8 11.3 59 119-178 223-286 (564)
353 PTZ00367 squalene epoxidase; P 95.7 0.022 4.7E-07 56.9 6.1 34 71-104 33-66 (567)
354 PRK04308 murD UDP-N-acetylmura 95.6 0.037 8.1E-07 53.7 7.6 81 70-178 4-86 (445)
355 KOG1800 Ferredoxin/adrenodoxin 95.6 0.067 1.5E-06 49.6 8.4 91 70-172 19-121 (468)
356 PLN02268 probable polyamine ox 95.6 0.018 4E-07 55.6 5.1 37 72-108 1-37 (435)
357 PRK13800 putative oxidoreducta 95.5 0.02 4.4E-07 60.5 5.6 26 185-210 361-386 (897)
358 PRK02472 murD UDP-N-acetylmura 95.5 0.046 1E-06 53.0 7.7 82 70-176 4-85 (447)
359 PRK13800 putative oxidoreducta 95.5 0.19 4.2E-06 53.2 12.8 32 72-103 14-45 (897)
360 COG0771 MurD UDP-N-acetylmuram 95.5 0.049 1.1E-06 52.3 7.5 82 71-178 7-88 (448)
361 COG1233 Phytoene dehydrogenase 95.5 0.02 4.2E-07 56.3 5.0 36 71-106 3-38 (487)
362 PRK07208 hypothetical protein; 95.5 0.021 4.6E-07 55.9 5.3 37 70-106 3-39 (479)
363 PRK06719 precorrin-2 dehydroge 95.4 0.027 5.9E-07 46.3 5.0 32 70-101 12-43 (157)
364 PF13241 NAD_binding_7: Putati 95.4 0.015 3.3E-07 44.1 3.2 35 70-104 6-40 (103)
365 KOG2844 Dimethylglycine dehydr 95.3 0.13 2.8E-06 51.1 9.6 54 116-171 190-243 (856)
366 PRK00421 murC UDP-N-acetylmura 95.2 0.04 8.7E-07 53.7 6.2 78 69-176 5-83 (461)
367 PRK08275 putative oxidoreducta 95.2 0.026 5.6E-07 56.4 4.9 24 186-209 357-380 (554)
368 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.031 6.8E-07 47.1 4.7 36 73-108 1-36 (180)
369 TIGR03862 flavo_PP4765 unchara 95.2 0.23 5.1E-06 46.9 10.9 97 82-183 55-162 (376)
370 TIGR02733 desat_CrtD C-3',4' d 95.1 0.029 6.2E-07 55.2 5.0 35 72-106 2-36 (492)
371 PRK05708 2-dehydropantoate 2-r 95.1 0.069 1.5E-06 49.1 7.1 33 72-104 3-35 (305)
372 TIGR00562 proto_IX_ox protopor 95.1 0.031 6.8E-07 54.4 5.0 35 72-106 3-41 (462)
373 PRK06249 2-dehydropantoate 2-r 95.0 0.17 3.7E-06 46.6 9.5 33 71-103 5-37 (313)
374 TIGR02734 crtI_fam phytoene de 94.9 0.029 6.2E-07 55.4 4.4 33 74-106 1-33 (502)
375 PLN02612 phytoene desaturase 94.9 0.12 2.6E-06 51.8 8.6 57 113-169 308-364 (567)
376 PRK06718 precorrin-2 dehydroge 94.8 0.051 1.1E-06 46.7 5.1 33 70-102 9-41 (202)
377 TIGR02731 phytoene_desat phyto 94.8 0.039 8.6E-07 53.6 4.9 34 73-106 1-34 (453)
378 PLN02576 protoporphyrinogen ox 94.8 0.046 1E-06 53.8 5.3 38 71-108 12-50 (496)
379 COG1893 ApbA Ketopantoate redu 94.7 0.085 1.8E-06 48.5 6.5 79 73-173 2-81 (307)
380 PRK07804 L-aspartate oxidase; 94.7 0.054 1.2E-06 54.0 5.6 54 185-240 357-411 (541)
381 TIGR02352 thiamin_ThiO glycine 94.7 0.16 3.4E-06 47.0 8.4 58 112-171 136-193 (337)
382 PRK08071 L-aspartate oxidase; 94.6 0.059 1.3E-06 53.2 5.7 55 185-240 332-386 (510)
383 PRK06854 adenylylsulfate reduc 94.6 0.048 1E-06 55.1 5.1 24 187-210 371-407 (608)
384 PRK15116 sulfur acceptor prote 94.6 0.048 1E-06 48.9 4.5 34 70-103 29-63 (268)
385 PRK12416 protoporphyrinogen ox 94.6 0.046 1E-06 53.3 4.8 35 72-106 2-42 (463)
386 PRK00141 murD UDP-N-acetylmura 94.6 0.13 2.7E-06 50.4 7.8 79 70-177 14-92 (473)
387 PRK09077 L-aspartate oxidase; 94.5 0.066 1.4E-06 53.3 5.7 55 185-240 353-407 (536)
388 PRK03369 murD UDP-N-acetylmura 94.5 0.12 2.5E-06 50.9 7.3 79 69-177 10-88 (488)
389 COG0562 Glf UDP-galactopyranos 94.5 0.062 1.4E-06 48.7 4.8 38 73-110 3-40 (374)
390 PRK09231 fumarate reductase fl 94.4 0.07 1.5E-06 53.6 5.8 54 185-239 358-411 (582)
391 COG1232 HemY Protoporphyrinoge 94.4 0.055 1.2E-06 52.0 4.8 35 72-106 1-37 (444)
392 TIGR00551 nadB L-aspartate oxi 94.4 0.075 1.6E-06 52.2 5.9 55 185-240 333-387 (488)
393 COG1053 SdhA Succinate dehydro 94.4 0.25 5.4E-06 49.3 9.4 33 71-103 6-38 (562)
394 TIGR00031 UDP-GALP_mutase UDP- 94.4 0.061 1.3E-06 50.9 4.8 34 73-106 3-36 (377)
395 PF01210 NAD_Gly3P_dh_N: NAD-d 94.3 0.056 1.2E-06 44.4 4.1 32 73-104 1-32 (157)
396 PF03721 UDPG_MGDP_dh_N: UDP-g 94.2 0.098 2.1E-06 44.3 5.4 78 73-170 2-87 (185)
397 PRK12921 2-dehydropantoate 2-r 94.2 0.23 5E-06 45.4 8.3 30 73-102 2-31 (305)
398 TIGR01320 mal_quin_oxido malat 94.1 0.064 1.4E-06 52.6 4.6 31 73-103 2-34 (483)
399 PLN02529 lysine-specific histo 94.1 0.08 1.7E-06 54.3 5.3 35 71-105 160-194 (738)
400 TIGR02732 zeta_caro_desat caro 94.1 0.073 1.6E-06 52.1 4.9 34 73-106 1-34 (474)
401 PLN03000 amine oxidase 94.0 0.14 3E-06 53.3 6.9 36 71-106 184-219 (881)
402 TIGR02731 phytoene_desat phyto 94.0 0.25 5.4E-06 48.0 8.5 57 113-169 213-274 (453)
403 TIGR02730 carot_isom carotene 94.0 0.25 5.5E-06 48.6 8.6 57 113-170 229-285 (493)
404 COG0029 NadB Aspartate oxidase 94.0 0.13 2.7E-06 49.5 6.1 55 186-241 342-396 (518)
405 KOG1335 Dihydrolipoamide dehyd 94.0 0.73 1.6E-05 43.0 10.7 96 70-170 38-184 (506)
406 COG1231 Monoamine oxidase [Ami 94.0 0.085 1.8E-06 50.1 4.9 40 70-109 6-45 (450)
407 PRK08401 L-aspartate oxidase; 94.0 0.1 2.3E-06 50.9 5.8 55 185-240 310-364 (466)
408 TIGR02730 carot_isom carotene 93.9 0.08 1.7E-06 52.1 4.9 34 73-106 2-35 (493)
409 PRK06263 sdhA succinate dehydr 93.9 0.1 2.2E-06 52.1 5.6 51 185-239 348-400 (543)
410 COG1004 Ugd Predicted UDP-gluc 93.9 0.06 1.3E-06 50.3 3.7 32 73-104 2-33 (414)
411 PRK07819 3-hydroxybutyryl-CoA 93.8 0.098 2.1E-06 47.6 4.8 37 72-108 6-42 (286)
412 PTZ00363 rab-GDP dissociation 93.7 0.36 7.7E-06 46.8 8.8 60 113-172 232-291 (443)
413 PRK04690 murD UDP-N-acetylmura 93.7 0.24 5.2E-06 48.4 7.7 81 70-177 7-87 (468)
414 KOG2853 Possible oxidoreductas 93.6 1.6 3.4E-05 40.2 12.0 32 72-103 87-122 (509)
415 PLN02487 zeta-carotene desatur 93.6 0.11 2.4E-06 51.9 5.2 35 72-106 76-110 (569)
416 PF00670 AdoHcyase_NAD: S-aden 93.5 0.18 4E-06 41.4 5.5 39 66-104 18-56 (162)
417 PLN02328 lysine-specific histo 93.5 0.12 2.7E-06 53.4 5.4 36 71-106 238-273 (808)
418 PRK07512 L-aspartate oxidase; 93.5 0.13 2.7E-06 51.0 5.4 55 185-240 341-395 (513)
419 KOG0405 Pyridine nucleotide-di 93.4 0.54 1.2E-05 43.3 8.8 100 72-176 21-170 (478)
420 PRK08229 2-dehydropantoate 2-r 93.4 0.49 1.1E-05 44.1 9.1 32 72-103 3-34 (341)
421 TIGR01082 murC UDP-N-acetylmur 93.4 0.19 4.1E-06 48.9 6.4 74 73-176 1-75 (448)
422 KOG2665 Predicted FAD-dependen 93.4 0.57 1.2E-05 42.6 8.8 66 118-184 201-269 (453)
423 TIGR01176 fum_red_Fp fumarate 93.4 0.11 2.4E-06 52.2 4.9 53 185-239 357-410 (580)
424 KOG4254 Phytoene desaturase [C 93.3 0.66 1.4E-05 44.2 9.4 54 114-168 265-318 (561)
425 PRK05562 precorrin-2 dehydroge 93.3 0.15 3.3E-06 44.3 5.0 34 70-103 24-57 (223)
426 TIGR02734 crtI_fam phytoene de 93.3 0.4 8.6E-06 47.3 8.6 57 113-170 219-275 (502)
427 PLN02568 polyamine oxidase 93.3 0.13 2.9E-06 51.1 5.2 37 70-106 4-45 (539)
428 PF01488 Shikimate_DH: Shikima 93.2 0.2 4.2E-06 40.1 5.3 35 70-104 11-46 (135)
429 COG2081 Predicted flavoprotein 93.1 0.11 2.3E-06 48.7 3.9 37 1-37 128-166 (408)
430 PRK05257 malate:quinone oxidor 93.1 0.12 2.5E-06 50.9 4.4 33 72-104 6-40 (494)
431 TIGR01087 murD UDP-N-acetylmur 93.0 0.3 6.6E-06 47.2 7.2 78 73-176 1-79 (433)
432 PLN02612 phytoene desaturase 93.0 0.15 3.3E-06 51.1 5.2 37 70-106 92-128 (567)
433 PRK06452 sdhA succinate dehydr 93.0 0.15 3.3E-06 51.1 5.2 51 185-239 346-400 (566)
434 PRK14192 bifunctional 5,10-met 92.9 0.24 5.3E-06 44.8 5.9 34 69-102 157-191 (283)
435 TIGR01812 sdhA_frdA_Gneg succi 92.8 0.19 4E-06 50.5 5.5 53 185-239 342-399 (566)
436 PLN02815 L-aspartate oxidase 92.7 0.2 4.4E-06 50.4 5.6 54 185-239 377-430 (594)
437 KOG1346 Programmed cell death 92.6 0.15 3.2E-06 47.9 4.1 53 124-180 268-321 (659)
438 PRK06175 L-aspartate oxidase; 92.6 0.21 4.6E-06 48.3 5.5 53 185-240 331-385 (433)
439 TIGR01811 sdhA_Bsu succinate d 92.5 0.22 4.7E-06 50.3 5.6 51 185-239 370-422 (603)
440 PRK08641 sdhA succinate dehydr 92.4 0.22 4.8E-06 50.1 5.5 52 185-239 355-407 (589)
441 PLN02676 polyamine oxidase 92.3 0.23 4.9E-06 48.8 5.3 38 70-107 25-63 (487)
442 PRK08293 3-hydroxybutyryl-CoA 92.3 0.26 5.7E-06 44.8 5.4 36 72-107 4-39 (287)
443 TIGR03197 MnmC_Cterm tRNA U-34 92.2 0.35 7.5E-06 45.8 6.4 56 113-171 135-190 (381)
444 COG2509 Uncharacterized FAD-de 92.2 0.15 3.2E-06 48.5 3.6 44 187-240 438-481 (486)
445 PRK07066 3-hydroxybutyryl-CoA 92.2 0.24 5.3E-06 45.7 5.0 37 71-107 7-43 (321)
446 PF00732 GMC_oxred_N: GMC oxid 92.1 0.22 4.8E-06 45.3 4.7 36 73-108 2-38 (296)
447 KOG1276 Protoporphyrinogen oxi 92.0 0.23 5E-06 46.8 4.6 38 69-106 9-48 (491)
448 PRK07395 L-aspartate oxidase; 92.0 0.24 5.3E-06 49.4 5.2 54 185-239 347-400 (553)
449 cd01080 NAD_bind_m-THF_DH_Cycl 92.0 0.62 1.3E-05 38.7 6.8 34 70-103 43-77 (168)
450 PRK03803 murD UDP-N-acetylmura 92.0 0.48 1E-05 46.0 7.1 80 69-177 4-86 (448)
451 KOG0685 Flavin-containing amin 91.9 0.27 5.9E-06 47.0 5.1 41 70-110 20-61 (498)
452 COG3573 Predicted oxidoreducta 91.9 1.8 3.8E-05 39.8 9.9 33 71-103 5-37 (552)
453 PRK06069 sdhA succinate dehydr 91.9 0.2 4.2E-06 50.4 4.4 51 185-239 352-411 (577)
454 PRK14573 bifunctional D-alanyl 91.8 0.38 8.2E-06 50.5 6.6 76 71-176 4-80 (809)
455 COG0686 Ald Alanine dehydrogen 91.7 0.85 1.8E-05 41.4 7.6 34 71-104 168-201 (371)
456 PF02254 TrkA_N: TrkA-N domain 91.7 0.71 1.5E-05 35.4 6.6 47 74-133 1-47 (116)
457 PRK09260 3-hydroxybutyryl-CoA 91.7 0.32 6.9E-06 44.2 5.3 36 72-107 2-37 (288)
458 PRK08626 fumarate reductase fl 91.6 0.24 5.3E-06 50.5 4.8 25 185-209 372-397 (657)
459 PRK07573 sdhA succinate dehydr 91.6 0.27 5.8E-06 50.1 5.1 25 186-210 407-431 (640)
460 COG0240 GpsA Glycerol-3-phosph 91.6 0.25 5.3E-06 45.3 4.3 89 72-179 2-91 (329)
461 PF00899 ThiF: ThiF family; I 91.4 0.26 5.6E-06 39.3 3.8 33 71-103 2-35 (135)
462 TIGR02061 aprA adenosine phosp 91.3 0.27 5.8E-06 49.7 4.7 19 192-210 400-418 (614)
463 PRK04148 hypothetical protein; 91.3 0.8 1.7E-05 36.4 6.4 35 70-105 16-50 (134)
464 COG1206 Gid NAD(FAD)-utilizing 91.2 0.23 5E-06 45.3 3.6 34 71-104 3-36 (439)
465 PTZ00363 rab-GDP dissociation 91.1 0.29 6.4E-06 47.4 4.6 38 72-109 5-42 (443)
466 COG0287 TyrA Prephenate dehydr 91.0 0.48 1E-05 42.9 5.5 94 71-191 3-96 (279)
467 COG0569 TrkA K+ transport syst 90.8 0.38 8.3E-06 42.1 4.6 33 72-104 1-33 (225)
468 PF06100 Strep_67kDa_ant: Stre 90.7 5.7 0.00012 38.7 12.6 58 114-171 208-274 (500)
469 TIGR02354 thiF_fam2 thiamine b 90.6 0.49 1.1E-05 40.5 5.0 34 70-103 20-54 (200)
470 PRK05945 sdhA succinate dehydr 90.6 0.45 9.8E-06 47.8 5.5 51 185-239 351-410 (575)
471 COG2085 Predicted dinucleotide 90.5 0.5 1.1E-05 40.5 4.9 91 72-192 2-92 (211)
472 PRK06129 3-hydroxyacyl-CoA deh 90.5 0.36 7.8E-06 44.4 4.4 35 72-106 3-37 (308)
473 COG1648 CysG Siroheme synthase 90.5 0.5 1.1E-05 40.8 4.9 74 70-171 11-84 (210)
474 KOG4716 Thioredoxin reductase 90.4 4.9 0.00011 37.1 11.2 32 70-101 18-49 (503)
475 PRK07803 sdhA succinate dehydr 90.4 0.39 8.5E-06 48.8 4.9 51 185-239 391-444 (626)
476 PRK03806 murD UDP-N-acetylmura 90.0 0.85 1.8E-05 44.1 6.8 79 70-177 5-83 (438)
477 TIGR01320 mal_quin_oxido malat 90.0 1.5 3.3E-05 43.0 8.6 68 113-182 178-250 (483)
478 PRK08205 sdhA succinate dehydr 90.0 0.55 1.2E-05 47.3 5.6 54 185-239 356-415 (583)
479 TIGR02733 desat_CrtD C-3',4' d 90.0 1.3 2.8E-05 43.6 8.1 56 113-169 232-292 (492)
480 TIGR03376 glycerol3P_DH glycer 89.9 0.59 1.3E-05 43.6 5.3 89 73-176 1-99 (342)
481 PRK05257 malate:quinone oxidor 89.8 1.9 4.1E-05 42.5 9.0 67 114-182 184-256 (494)
482 TIGR01816 sdhA_forward succina 89.8 0.5 1.1E-05 47.4 5.1 53 186-239 332-393 (565)
483 PRK15057 UDP-glucose 6-dehydro 89.8 0.34 7.3E-06 46.1 3.7 32 73-105 2-33 (388)
484 cd00401 AdoHcyase S-adenosyl-L 89.8 0.64 1.4E-05 44.4 5.5 36 69-104 200-235 (413)
485 PRK12842 putative succinate de 89.7 0.46 9.9E-06 47.8 4.8 34 71-104 9-42 (574)
486 COG0169 AroE Shikimate 5-dehyd 89.7 1.9 4.2E-05 39.0 8.3 50 70-128 125-175 (283)
487 PF00996 GDI: GDP dissociation 89.7 5.8 0.00013 38.3 11.9 58 114-172 233-290 (438)
488 TIGR02732 zeta_caro_desat caro 89.7 1.6 3.4E-05 42.8 8.4 58 113-170 219-283 (474)
489 PRK05329 anaerobic glycerol-3- 89.6 0.49 1.1E-05 45.5 4.6 32 72-103 3-34 (422)
490 PLN02545 3-hydroxybutyryl-CoA 89.6 0.81 1.8E-05 41.7 6.0 37 71-107 4-40 (295)
491 TIGR00561 pntA NAD(P) transhyd 89.6 1.8 4E-05 42.5 8.6 35 70-104 163-197 (511)
492 PRK02006 murD UDP-N-acetylmura 89.5 1 2.2E-05 44.4 7.0 35 70-104 6-40 (498)
493 PRK04663 murD UDP-N-acetylmura 89.4 1 2.2E-05 43.7 6.7 76 72-177 8-86 (438)
494 PRK06035 3-hydroxyacyl-CoA deh 89.3 0.52 1.1E-05 42.9 4.4 35 72-106 4-38 (291)
495 TIGR02853 spore_dpaA dipicolin 89.2 0.64 1.4E-05 42.3 4.9 35 70-104 150-184 (287)
496 PRK08958 sdhA succinate dehydr 89.2 0.52 1.1E-05 47.5 4.7 54 185-239 357-420 (588)
497 PRK07057 sdhA succinate dehydr 89.2 0.6 1.3E-05 47.1 5.1 54 185-239 361-423 (591)
498 PRK06522 2-dehydropantoate 2-r 89.2 0.55 1.2E-05 42.8 4.5 31 73-103 2-32 (304)
499 TIGR03467 HpnE squalene-associ 89.1 1.3 2.9E-05 42.1 7.3 53 117-170 201-253 (419)
500 PRK05808 3-hydroxybutyryl-CoA 89.1 0.66 1.4E-05 42.0 4.9 36 72-107 4-39 (282)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.2e-49 Score=376.82 Aligned_cols=317 Identities=26% Similarity=0.375 Sum_probs=277.0
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+.+++|+.||++++.|.+++|+.+.||+||||||++|+.+| .++...++++++++..++..+.+.+..+++++|||+|+
T Consensus 76 ~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ 154 (396)
T PRK09754 76 HSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGT 154 (396)
T ss_pred EcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 45678999999999999999989999999999999987544 44555678999999999998888888899999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|+++|.+||++++.++++++.+++...+.+.+.++++||++++++.+++++. ++. ..+.+.+|+++++|
T Consensus 155 ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD 231 (396)
T PRK09754 155 IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQAD 231 (396)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECC
Confidence 999999999999999999999999988778899999999999999999999999999974 222 35778899999999
Q ss_pred EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
.+|+++|.+||+.+++++++..+ ++|.||++++|+.|+|||+|||+..+.+ .|...+.++|++|.+||+.+|+||++
T Consensus 232 ~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g- 308 (396)
T PRK09754 232 VVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLG- 308 (396)
T ss_pred EEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcC-
Confidence 99999999999988888888775 6799999999999999999999987766 67777788999999999999999996
Q ss_pred CCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652 242 QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 319 (352)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 319 (352)
...+++.+||||+++|+.. ++++|.... +...+++.+ .++..||+++|+|+|+++ .+.++++..++++++
T Consensus 309 ~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~ 380 (396)
T PRK09754 309 LPLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIRPIRKWIQ 380 (396)
T ss_pred CCCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHHHHHHHHH
Confidence 4577899999999999865 899997554 445566544 557788889999999997 789999999999999
Q ss_pred CCCCCChhhhcCCC
Q 018652 320 SQPFVDKAKLQQAS 333 (352)
Q Consensus 320 ~~~~~~~~~~~~~~ 333 (352)
.+.++++..+.++.
T Consensus 381 ~~~~~~~~~~~~~~ 394 (396)
T PRK09754 381 SGKTFDAKLLIDEN 394 (396)
T ss_pred CCCCCCHHHhcCcc
Confidence 99999998877764
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.9e-49 Score=361.23 Aligned_cols=330 Identities=45% Similarity=0.774 Sum_probs=301.5
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+++++|+++|..+++|.+.+|+.+.|++|+||||+.+++ +++||.+.++++++++++|++.+...+....+++++|+|+
T Consensus 145 ~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ 223 (478)
T KOG1336|consen 145 ILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGF 223 (478)
T ss_pred EEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchH
Confidence 678999999999999999999999999999999998875 5578988999999999999999988888899999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+++.++++||++++++.+.+++.++++++..|.+.+|+++++|
T Consensus 224 ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 224 IGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred HHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred EEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.|++++|.+|++.+++. +..++ +|+|.||+.|||++|||||+|||+.+|.+.++...+++|++.|+.+|+.+...+..
T Consensus 304 lvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~ 382 (478)
T KOG1336|consen 304 LVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKM 382 (478)
T ss_pred eEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhc
Confidence 99999999999999986 55554 79999999999999999999999999999888877799999999999987777754
Q ss_pred CCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcccEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 319 (352)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 319 (352)
.....++++||||+..|+.. |+++|+...+.++.|+.+ .+|..||++ +..+++.+..+..+....+..+++
T Consensus 383 ~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~ 454 (478)
T KOG1336|consen 383 APQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLAR 454 (478)
T ss_pred cCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHh
Confidence 33334779999999999864 899999988888899876 578999999 888888887888888999999999
Q ss_pred CCCCCChhhhcCCCchHHHHHH
Q 018652 320 SQPFVDKAKLQQASSVEEALEI 341 (352)
Q Consensus 320 ~~~~~~~~~~~~~~~~~e~~~~ 341 (352)
.++.+...++++..+.+.++.+
T Consensus 455 ~~~~v~~~~~~~~~~~~~~~~~ 476 (478)
T KOG1336|consen 455 QGPEVTSLKLLSKSGDSFWLTI 476 (478)
T ss_pred cCCcchhhhhccccchhhHHhh
Confidence 9999999888888888887764
No 3
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2e-40 Score=337.84 Aligned_cols=307 Identities=22% Similarity=0.370 Sum_probs=254.1
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+++++|++||++++.|++.+|+++.||+||||||+.|+. |++||.+.++++++++++++..+++....+++++|||||+
T Consensus 72 ~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~ 150 (785)
T TIGR02374 72 YTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGL 150 (785)
T ss_pred EcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 467899999999999999999999999999999999874 6678888889999999999999888888899999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++++.++++.. ++....+.+++|+++++|
T Consensus 151 ~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D 228 (785)
T TIGR02374 151 LGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEAD 228 (785)
T ss_pred HHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcC
Confidence 999999999999999999999999988889999999999999999999999999999974 344567889999999999
Q ss_pred EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
.||+++|.+|++.++++++++.+ ++|.||++|||+.|+|||+|||+..+...++ .|..|..||+.+|.||++.
T Consensus 229 ~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 229 LIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADHICGV 301 (785)
T ss_pred EEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988999887 7899999999999999999999987654433 5677999999999999965
Q ss_pred CCCCCCCCCeeee-eccCcCCCCcceeeEEeecCcc----cEEEEcC-CCCcEEEEEEECCEEEEEEeecCCHHHhhHHH
Q 018652 242 QTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG----ETIEIGN-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLP 315 (352)
Q Consensus 242 ~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~----~~~~~~~-~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 315 (352)
...+|...+.... +.+++. +..+|.... +.+...+ ....|.++++++++|+|+++ .++..+...+.
T Consensus 302 ~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~~~L~ 373 (785)
T TIGR02374 302 ECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDYGRLL 373 (785)
T ss_pred CCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHHHHHH
Confidence 4355555443211 233321 334443221 1222222 23568899999999999997 67888889999
Q ss_pred HHHhCCCCCCh
Q 018652 316 TLARSQPFVDK 326 (352)
Q Consensus 316 ~~~~~~~~~~~ 326 (352)
.+++++..+..
T Consensus 374 ~li~~~~~l~~ 384 (785)
T TIGR02374 374 DMVLKQADISE 384 (785)
T ss_pred HHHHcCCCCCc
Confidence 99987765543
No 4
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3.9e-40 Score=335.53 Aligned_cols=309 Identities=20% Similarity=0.331 Sum_probs=248.5
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+.+++|++||++.+.|++++|+.++||+||||||++|+ .|++||.+.++++++++++++..+......+++++|||||+
T Consensus 77 ~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~ 155 (847)
T PRK14989 77 LVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGL 155 (847)
T ss_pred EcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCH
Confidence 45778999999999999999989999999999999986 46678887888999999999999888888899999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|+++|.+|+++++.++++++.++++.++.+.+.|++.||++++++.+++|..+.++....+.+++|+++++|
T Consensus 156 iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D 235 (847)
T PRK14989 156 LGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD 235 (847)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence 99999999999999999999999999878999999999999999999999999999997543344557888999999999
Q ss_pred EEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.||+++|.+||+++++++|++.+ +|+|.||++|+|+.|+|||+|||+......++ .+..|..||+.+|.||++
T Consensus 236 ~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 236 FIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred EEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHHHHHHHhcC
Confidence 99999999999999889999875 57899999999999999999999987654432 566799999999999996
Q ss_pred CCCCCCCCCCee-eeeccCcCCCCcceeeEEeecCcc-----cE-EEEcCCCCcEEEEEEE--CCEEEEEEeecCCHHHh
Q 018652 241 AQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVG-----ET-IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEF 311 (352)
Q Consensus 241 ~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~G~~~~-----~~-~~~~~~~~~~~~~~~~--~~~v~g~~~~~~~~~~~ 311 (352)
.. .+|...... -.+.+++. +..+|...+ +. .........|.++.++ +++|+|+++ .++..+.
T Consensus 310 ~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l-vGd~~~~ 380 (847)
T PRK14989 310 SE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL-VGDTSDY 380 (847)
T ss_pred CC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-ECCHHHH
Confidence 43 344432211 11222221 333443221 11 2233333557787775 469999997 6777777
Q ss_pred hHHHHHHhCCCCCCh
Q 018652 312 QLLPTLARSQPFVDK 326 (352)
Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (352)
..+..++.++..+..
T Consensus 381 ~~l~~~~~~~~~l~~ 395 (847)
T PRK14989 381 GNLLQLVLNAIELPE 395 (847)
T ss_pred HHHHHHHHcCCCCcc
Confidence 777777766665544
No 5
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.3e-39 Score=306.27 Aligned_cols=288 Identities=25% Similarity=0.354 Sum_probs=232.2
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+++++|++||++++.|++ ++..+.||+||||||++|+ .|+++|... ++.++++.++..+...+..+++++|||+|+
T Consensus 76 ~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~vvViGgG~ 151 (377)
T PRK04965 76 FPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRVLVVGGGL 151 (377)
T ss_pred ECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 457899999999999887 5667999999999999986 455666433 788899999888888777889999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|++.|.+|+++++.++++++.+++.....+++.+++.||++++++.+++++.++ + ...+.+.+|++++||
T Consensus 152 ~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~g~~i~~D 229 (377)
T PRK04965 152 IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-S-GIRATLDSGRSIEVD 229 (377)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-C-EEEEEEcCCcEEECC
Confidence 99999999999999999999999988877889999999999999999999999999998542 2 235778899999999
Q ss_pred EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
.+|+|+|.+|++.+++.+++..++ ++.||++|+|+.|+|||+|||+..+... .+.|+.|.+||+.+|+||++.
T Consensus 230 ~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 230 AVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred EEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998875 5999999999999999999999875432 336777999999999999964
Q ss_pred CCCCCCCCCeeee-eccCcCCCCcceeeEEeecCcc---cEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHH
Q 018652 242 QTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 310 (352)
Q Consensus 242 ~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 310 (352)
..+|...+..++ +.+++ .+.++|.... .+....+....|.++++++|+++|+++.++....
T Consensus 303 -~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 303 -NTPLKLPAMLVKVKTPEL-------PLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred -CcccccCCccEEEecCce-------eeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 345655443322 23332 2666776543 1222222235678888899999999986554443
No 6
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=5.9e-41 Score=321.01 Aligned_cols=307 Identities=22% Similarity=0.366 Sum_probs=262.2
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+.+.+|+.||++++.|++++|..+.||+|||||||.|+.+ ++||.++++++.+++++|...+....+..++.+|||||.
T Consensus 77 ~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~-PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGL 155 (793)
T COG1251 77 YTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL-PIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGL 155 (793)
T ss_pred EcCCeeEEeccCcceEEccCCcEeecceeEEecCcccccc-CCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccch
Confidence 5688999999999999999999999999999999999854 489999999999999999999888766777889999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
.|+|+|..|.+.|.+++|++..+.++.+++++.....|++.+++.|++++++....++.. .+.+..+.++||+.+++|
T Consensus 156 LGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad 233 (793)
T COG1251 156 LGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPAD 233 (793)
T ss_pred hhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccce
Confidence 999999999999999999999999999999999999999999999999999998888874 567779999999999999
Q ss_pred EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
.||+++|.+||.++..++|+..++ +|+||++||||+|+|||+|+|+.+....+|.. .-+.+|++.+|.++++.
T Consensus 234 ~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLV------aP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 234 LVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLV------APLYEQAKVLADHLCGG 306 (793)
T ss_pred eEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccceeh------hHHHHHHHHHHHHhccC
Confidence 999999999999999999999986 99999999999999999999999988776654 34899999999999976
Q ss_pred CCCCCCC-CCeeeeeccCcCCCCcceeeEEeecCc----c-cEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHH
Q 018652 242 QTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLP 315 (352)
Q Consensus 242 ~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 315 (352)
....|.. .+ +.....+|.. +-..|+.. . .++........|+++.+++|+|+|+++ .++..+-..+.
T Consensus 307 ~~~~y~gsv~---stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt~d~~~l~ 378 (793)
T COG1251 307 EAEAYEGSVT---STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDTSDGGWLL 378 (793)
T ss_pred cccccccccc---hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-EeecccchHHH
Confidence 5443332 22 2333344422 33344432 1 233333334679999999999999997 78888888999
Q ss_pred HHHhCCCCCCh
Q 018652 316 TLARSQPFVDK 326 (352)
Q Consensus 316 ~~~~~~~~~~~ 326 (352)
.++.++..++.
T Consensus 379 ~li~~~~~~se 389 (793)
T COG1251 379 DLILKGADISE 389 (793)
T ss_pred HHHhcCCCccc
Confidence 99988887766
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.1e-38 Score=302.88 Aligned_cols=315 Identities=21% Similarity=0.298 Sum_probs=233.2
Q ss_pred ccCCceEEEECCCcEEEeCCC---e--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652 2 IYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV 74 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g---~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v 74 (352)
+++++|++||+++++|.+.++ + ++.||+||||||++|+. |.. +.+++++++++.++..+.+.+. .++++
T Consensus 76 ~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 151 (438)
T PRK13512 76 KTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKANQVDKA 151 (438)
T ss_pred EeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence 457899999999999988653 2 47999999999999864 332 2467888888888887776543 46899
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652 75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~ 154 (352)
+|||||++|+|+|..|++.|.+||++++.+++++ .+++++.+.+.+.|++.||++++++.+++++.. .+.+++
T Consensus 152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~ 224 (438)
T PRK13512 152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKS 224 (438)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECC
Confidence 9999999999999999999999999999988876 589999999999999999999999999999631 466778
Q ss_pred CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
|+++++|.+++++|++||++++++.+++.+ +|+|.||+++||+.|+|||+|||+..+....+..........|.++|+.
T Consensus 225 g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~ 304 (438)
T PRK13512 225 GKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI 304 (438)
T ss_pred CCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence 889999999999999999999999998875 5789999999999999999999997543322222223344558999999
Q ss_pred HHHHHhcCCCCCC---CCCCeeeeeccCcCCCCcceeeEEeecCccc-------EEEE---------cCCCCcEEEEEEE
Q 018652 234 CIKALLSAQTHTY---DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIATFWID 294 (352)
Q Consensus 234 aa~~i~~~~~~~~---~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~~~~~~ 294 (352)
+|+||++....++ ..+|+. ..++.. +..+|....+ .... .....-+.++.++
T Consensus 305 ~a~ni~g~~~~~~~~~~~~~~~--~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d 375 (438)
T PRK13512 305 VAEQIAGNDTIEFKGFLGNNIV--KFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD 375 (438)
T ss_pred HHHHhcCCCccccCCcccceEE--EEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEE
Confidence 9999986432222 223332 222211 2233332210 0000 0011225566553
Q ss_pred --CCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCCh-h--hhcCCCchH
Q 018652 295 --SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDK-A--KLQQASSVE 336 (352)
Q Consensus 295 --~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~ 336 (352)
+++|+|+++++.+ +.++. .+..+++.+.++++ . ++..||+++
T Consensus 376 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 376 TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 5899999987765 66665 44556789988887 2 256677655
No 8
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.5e-38 Score=297.69 Aligned_cols=301 Identities=25% Similarity=0.404 Sum_probs=231.1
Q ss_pred CcEEEeCC--CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652 14 KQTLITNS--GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 14 ~~~V~~~~--g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
.++|.+.+ .+++.+|++|||||++|+.+ +.++ +++..++. .+........+++++|||||++|+|+|..++
T Consensus 121 ~~~v~V~~~~~~~~~a~~iiIATGS~p~~~-~~~~--~~~~~~~~----s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~ 193 (454)
T COG1249 121 PHTVEVTGEDKETITADNIIIATGSRPRIP-PGPG--IDGARILD----SSDALFLLELPKSLVIVGGGYIGLEFASVFA 193 (454)
T ss_pred CCEEEEcCCCceEEEeCEEEEcCCCCCcCC-CCCC--CCCCeEEe----chhhcccccCCCEEEEECCCHHHHHHHHHHH
Confidence 56777665 47899999999999999754 4444 33333332 2222222367999999999999999999999
Q ss_pred hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCC
Q 018652 92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGA 169 (352)
Q Consensus 92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~ 169 (352)
++|.+||++++.+++++ .+++++++.+.+.|++.|+++++++.+++++..+++ ..+.+++|+ .+++|.+++|+|+
T Consensus 194 ~LG~~VTiie~~~~iLp-~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 194 ALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HcCCcEEEEecCCCCCC-cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCC
Confidence 99999999999999998 499999999999999999999999999999865444 467777776 7999999999999
Q ss_pred CCCch--hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--C
Q 018652 170 KPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--H 244 (352)
Q Consensus 170 ~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--~ 244 (352)
+||++ -|++.|++.+ +|+|.||+.++|++|+|||+|||+..+. ....|..+|+.+|.||++... .
T Consensus 271 ~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~ 340 (454)
T COG1249 271 KPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPI 340 (454)
T ss_pred ccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcC
Confidence 99998 3889999987 4899999888889999999999988664 223499999999999996222 2
Q ss_pred CCCCCCeeeeeccCcCCCCcceeeEEeecCcccE------EEEc--CC-----------CCcEEEEEEE--CCEEEEEEe
Q 018652 245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIG--NF-----------DPKIATFWID--SGKLKGVLV 303 (352)
Q Consensus 245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~--~~-----------~~~~~~~~~~--~~~v~g~~~ 303 (352)
.+..+|+......+ +.++|....+. +..+ .+ ...|.++..+ +++|+|+++
T Consensus 341 d~~~iP~~ift~Pe---------ia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahi 411 (454)
T COG1249 341 DYRLIPSVVFTDPE---------IASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHI 411 (454)
T ss_pred cccCCCEEEECCCc---------ceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEE
Confidence 46778885433333 44455543211 1111 00 1236666665 489999999
Q ss_pred ecCCHHHhhHHHHH-HhCCCCCChh--hhcCCCchHHHHHHHH
Q 018652 304 ESGSPEEFQLLPTL-ARSQPFVDKA--KLQQASSVEEALEIAR 343 (352)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~e~~~~~~ 343 (352)
++.++.++.....+ ++.+.+.+.. .++.||+++|++..++
T Consensus 412 vg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 412 VGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred ECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence 99999999866655 5888877773 3799999999999874
No 9
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=6e-38 Score=303.03 Aligned_cols=325 Identities=21% Similarity=0.261 Sum_probs=241.8
Q ss_pred ccCCceEEEECCCcEEEeCC---CeEEe--cCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652 2 IYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV 74 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~---g~~~~--yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v 74 (352)
+++++|++||++++.|.+.+ ++.+. ||+||||||++|+ .|.++|.+.++++++++..+..++.+.+. .++++
T Consensus 74 ~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v 152 (444)
T PRK09564 74 KTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNI 152 (444)
T ss_pred EecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEE
Confidence 45789999999999888764 55666 9999999999986 45667776788998988888877766553 46899
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652 75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~ 154 (352)
+|+|+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.++++ ++.+..+.++
T Consensus 153 vVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~- 229 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD- 229 (444)
T ss_pred EEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-
Confidence 9999999999999999999999999999988887668999999999999999999999999999964 3344445554
Q ss_pred CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
+.++++|.+++|+|.+|+++++++++++.+ +|+|.||++++|+.|||||+|||+..+....+.....+.+..|.+||+.
T Consensus 230 ~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~ 309 (444)
T PRK09564 230 KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRM 309 (444)
T ss_pred CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHH
Confidence 447999999999999999999999998864 5789999999999999999999998765544444445577889999999
Q ss_pred HHHHHhcCCCCCCCC--CCeeeeeccCcCCCCcceeeEEeecCccc---------EEEEc---------CCCCcEEEEEE
Q 018652 234 CIKALLSAQTHTYDY--LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWI 293 (352)
Q Consensus 234 aa~~i~~~~~~~~~~--~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~~~~~~ 293 (352)
+|+||++.. ..++. .|.. ...++. .+..+|....+ ..... +....|.++.+
T Consensus 310 ~a~ni~g~~-~~~~~~~~~~~-~~~~~~-------~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~ 380 (444)
T PRK09564 310 VGENLAGRH-VSFKGTLGSAC-IKVLDL-------EAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY 380 (444)
T ss_pred HHHHhcCCC-CCCCCcccceE-EEECCE-------EEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence 999999643 22221 1211 111221 13334433211 01010 01123556555
Q ss_pred --ECCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCChhh--hcCC-CchHHHH
Q 018652 294 --DSGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDKAK--LQQA-SSVEEAL 339 (352)
Q Consensus 294 --~~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~e~~ 339 (352)
++++|+|+++++.+ +.++. .+..+|+++.+++.-. ...+ |+++|+.
T Consensus 381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 36899999986654 54544 5566789998888732 2333 7776554
No 10
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=8.5e-38 Score=300.40 Aligned_cols=312 Identities=22% Similarity=0.325 Sum_probs=240.2
Q ss_pred ccCCceEEEECCCcEEEeCC---CeEEe--cCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh--cCCCeE
Q 018652 2 IYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKV 74 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~---g~~~~--yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~v 74 (352)
+++++|++||++++.|.+.+ ++.+. ||+||||||++|+. |.++|.+.+++++.++..++..++..+ ..++++
T Consensus 62 ~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v 140 (427)
T TIGR03385 62 KTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENV 140 (427)
T ss_pred EecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeE
Confidence 45789999999999887753 35677 99999999999864 567776667888899988888777766 457899
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652 75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~ 154 (352)
+|||+|++|+|+|..|++.|.+|+++++.+.++...+++++...+.+.+++.||++++++.+++++.+ +.+ +.+.+
T Consensus 141 vViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~ 216 (427)
T TIGR03385 141 VIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS 216 (427)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC
Confidence 99999999999999999999999999999887545688899999999999999999999999999743 332 45678
Q ss_pred CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
|+++++|.+|+++|.+|+++++++++++.+ +|+|.||++++|+.|+|||+|||+..+....+.....+.+..|.+||+.
T Consensus 217 g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 296 (427)
T TIGR03385 217 GGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRI 296 (427)
T ss_pred CCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHH
Confidence 889999999999999999999999998875 5789999999999999999999998766544443334577889999999
Q ss_pred HHHHHhcCCCCCCCCCCeee-eeccCcCCCCcceeeEEeecCccc---------EEEEc--C-------CCCcEEEEEEE
Q 018652 234 CIKALLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG--N-------FDPKIATFWID 294 (352)
Q Consensus 234 aa~~i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~--~-------~~~~~~~~~~~ 294 (352)
+|+||.+. ...+...+..+ ...+++. +..+|....+ ..... . ...-+.++.++
T Consensus 297 ~a~ni~g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~ 368 (427)
T TIGR03385 297 AGENIAGN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYE 368 (427)
T ss_pred HHHHhcCC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEE
Confidence 99999864 34444322222 3333321 5555653321 11110 0 01125566664
Q ss_pred --CCEEEEEEeecCC-HHHhhHH-HHHHhCCCCCCh
Q 018652 295 --SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVDK 326 (352)
Q Consensus 295 --~~~v~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~ 326 (352)
+++|+|+++++.+ +.++... ..+|+.+.++++
T Consensus 369 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~ 404 (427)
T TIGR03385 369 KDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKD 404 (427)
T ss_pred CCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHH
Confidence 5999999987777 7776544 556788888887
No 11
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.1e-37 Score=299.50 Aligned_cols=310 Identities=21% Similarity=0.293 Sum_probs=232.2
Q ss_pred cCCceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652 3 YQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 80 (352)
Q Consensus 3 ~~~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG 80 (352)
+..++..+|+...+|++.+|+ .+.||+||||||++|+. |.+||.+ ...+.+++..+ ...+++++|||+|
T Consensus 142 i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG 212 (499)
T PLN02507 142 YEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PNIPGKE-----LAITSDEALSL---EELPKRAVVLGGG 212 (499)
T ss_pred EEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CCCCCcc-----ceechHHhhhh---hhcCCeEEEECCc
Confidence 345677788888888888876 58999999999999864 5555532 11233343333 2347899999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652 81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 160 (352)
Q Consensus 81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 160 (352)
++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+++++..++ . ..+.+.+|+++++
T Consensus 213 ~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~-~-~~v~~~~g~~i~~ 289 (499)
T PLN02507 213 YIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEG-G-IKVITDHGEEFVA 289 (499)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC-e-EEEEECCCcEEEc
Confidence 99999999999999999999999888874 8999999999999999999999999999985433 2 2466778889999
Q ss_pred CEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652 161 DTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237 (352)
Q Consensus 161 D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 237 (352)
|.|++++|++||+.+ +++++++.+ +|+|.||+++||+.|||||+|||+..+. ....|..||+.+|+|
T Consensus 290 D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~n 359 (499)
T PLN02507 290 DVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKT 359 (499)
T ss_pred CEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHH
Confidence 999999999999986 578888875 5779999999999999999999996432 445699999999999
Q ss_pred HhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc--------cEEE------------EcCCCCcEEEEEEE-
Q 018652 238 LLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIE------------IGNFDPKIATFWID- 294 (352)
Q Consensus 238 i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~~------------~~~~~~~~~~~~~~- 294 (352)
|+++... .+..+|+ ..|+++- +..+|.... +... .+....-+.++.++
T Consensus 360 i~g~~~~~~~~~~~p~---~if~~p~------ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~ 430 (499)
T PLN02507 360 VFGGQPTKPDYENVAC---AVFCIPP------LSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDA 430 (499)
T ss_pred HcCCCCCcCCCCCCCe---EEECCCc------cEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEEC
Confidence 9864332 2344454 3444321 233343211 0000 01111235666654
Q ss_pred -CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh--hhcCCCchHHHHHHHH
Q 018652 295 -SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA--KLQQASSVEEALEIAR 343 (352)
Q Consensus 295 -~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~ 343 (352)
+++|+|+++++.++.++... ..+|+.+.++++. .++.||+++|.+..++
T Consensus 431 ~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 431 ETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR 483 (499)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence 58999999988888777654 4567999999883 3789999999998865
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=3.2e-36 Score=292.22 Aligned_cols=314 Identities=18% Similarity=0.312 Sum_probs=234.2
Q ss_pred CceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652 5 DPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI 82 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 82 (352)
.++..++....+|.+.+|+ .+.||+||||||++|+. |+.++...+++++ ++.+......+++++|||+|++
T Consensus 114 g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~ 186 (461)
T PRK05249 114 GRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVDFDHPRIYD------SDSILSLDHLPRSLIIYGAGVI 186 (461)
T ss_pred EEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCCCCCCeEEc------HHHhhchhhcCCeEEEECCCHH
Confidence 3455566666667766764 69999999999999874 4444433344433 2333333446899999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCE
Q 018652 83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 162 (352)
Q Consensus 83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~ 162 (352)
|+|+|..|++.|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+++++..++ . ..+.+.+|+++++|.
T Consensus 187 g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~ 263 (461)
T PRK05249 187 GCEYASIFAALGVKVTLINTRDRLLS-FLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-G-VIVHLKSGKKIKADC 263 (461)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCcCC-cCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-e-EEEEECCCCEEEeCE
Confidence 99999999999999999999999987 48999999999999999999999999999985433 2 245677888999999
Q ss_pred EEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 163 IVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 163 vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+++|+|.+||+++ ++.++++.+ +|++.||+++||+.|+|||+|||+..+. ....|..+|+.+|.+|+
T Consensus 264 vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 264 LLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPS----------LASASMDQGRIAAQHAV 333 (461)
T ss_pred EEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHc
Confidence 9999999999885 567788765 5779999999999999999999996432 34569999999999999
Q ss_pred cCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--------------------cEEEEcCCCCcEEEEEEE--CC
Q 018652 240 SAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------------------ETIEIGNFDPKIATFWID--SG 296 (352)
Q Consensus 240 ~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------------------~~~~~~~~~~~~~~~~~~--~~ 296 (352)
+... ..+..+|.. +|..+- +.++|.... .....+. ..-|.++.++ ++
T Consensus 334 g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~ 403 (461)
T PRK05249 334 GEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGD-NVGMLKILFHRETL 403 (461)
T ss_pred CCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcCCCeEEEEEccccccceeecCC-CCcEEEEEEECCCC
Confidence 5432 234455654 333210 233333221 1111111 1235565554 58
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+|+|+++++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+.+
T Consensus 404 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 458 (461)
T PRK05249 404 EILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLN 458 (461)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhc
Confidence 999999988888887755 455699999988 33 68999999999999876654
No 13
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3.1e-36 Score=290.43 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=225.4
Q ss_pred CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652 13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 92 (352)
Q Consensus 13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~ 92 (352)
++++|.+.+|+.+.||+||||||++|+ .|++++.....+ .+.++...+ ...+++++|||+|++|+|+|..|++
T Consensus 115 ~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~ 187 (451)
T PRK07846 115 GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSA 187 (451)
T ss_pred cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCccE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHH
Confidence 567888888888999999999999996 455666332222 233333332 2357899999999999999999999
Q ss_pred CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+|.+||++++++++++ .+++++.+.+.+.+ +.+|++++++++++++..+ +. ..+.+.+|+++++|.|++++|.+||
T Consensus 188 ~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 188 LGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SG-VTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred cCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CE-EEEEECCCcEeecCEEEEEECCccC
Confidence 9999999999998886 48889888887755 5689999999999998542 22 3466778889999999999999999
Q ss_pred chhh--hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCC
Q 018652 173 VSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTY 246 (352)
Q Consensus 173 ~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~ 246 (352)
++++ ++++++.+ +|+|.||+++||+.|+|||+|||+..+. ....|.+||+.+++||++... ..+
T Consensus 264 ~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~ 333 (451)
T PRK07846 264 GDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDH 333 (451)
T ss_pred ccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCC
Confidence 9884 67788875 6779999999999999999999997532 234599999999999986422 234
Q ss_pred CCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEEEE--CCEEEEEEee
Q 018652 247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFWID--SGKLKGVLVE 304 (352)
Q Consensus 247 ~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~~~--~~~v~g~~~~ 304 (352)
..+|+......+ +..+|....+ .. ..++ ..-|.++.++ +++|+|++++
T Consensus 334 ~~~p~~if~~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~ 403 (451)
T PRK07846 334 RFVPAAVFTHPQ---------IASVGLTENEARAAGLDITVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHII 403 (451)
T ss_pred CCCCeEEECCCC---------cEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEE
Confidence 556765332222 3334433210 00 0111 1235555554 5999999998
Q ss_pred cCCHHHhhHH-HHHHhCCCCCChh-h--hcCCCchHHHHHHHHhcC
Q 018652 305 SGSPEEFQLL-PTLARSQPFVDKA-K--LQQASSVEEALEIARAAL 346 (352)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~~~e~~~~~~~~~ 346 (352)
+.++.++... ..+|+.+.++++- . ...||+++|++..+++.+
T Consensus 404 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 449 (451)
T PRK07846 404 GPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL 449 (451)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence 8888777644 4567999999883 3 368999999999988753
No 14
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.9e-36 Score=290.83 Aligned_cols=309 Identities=21% Similarity=0.270 Sum_probs=226.9
Q ss_pred CCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652 12 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 12 ~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
.+.++|.+ +++++.||+||||||++|+ .|+++|.+..++++.. .+......+++++|||+|++|+|+|..|+
T Consensus 120 ~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~ 191 (463)
T PRK06370 120 ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFR 191 (463)
T ss_pred ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCCCcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHH
Confidence 34567776 4567999999999999986 4666775444444332 22222245799999999999999999999
Q ss_pred hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccCCC
Q 018652 92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAK 170 (352)
Q Consensus 92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~ 170 (352)
+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.+++..+++....+... +++++++|.||+++|.+
T Consensus 192 ~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 192 RFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 999999999999998875 7889999999999999999999999999986433322223333 34579999999999999
Q ss_pred CCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--
Q 018652 171 PTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-- 245 (352)
Q Consensus 171 p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-- 245 (352)
||++ + +++.+++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..||+.+|+||++....+
T Consensus 271 pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~ 340 (463)
T PRK06370 271 PNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVS 340 (463)
T ss_pred cCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 9988 4 677888775 5779999999999999999999986532 33459999999999998642333
Q ss_pred CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CCEEEEEEee
Q 018652 246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SGKLKGVLVE 304 (352)
Q Consensus 246 ~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~~v~g~~~~ 304 (352)
+..+|+.. |..+ .+..+|.... +. ... .+...-+.++.++ +++|+|++++
T Consensus 341 ~~~~p~~~---~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~ 411 (463)
T PRK06370 341 DRIVPYAT---YTDP------PLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATIL 411 (463)
T ss_pred cccCCeEE---EcCC------CcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEE
Confidence 33455532 2211 1333444321 00 000 0011235666664 5899999998
Q ss_pred cCCHHHhhHH-HHHHhCCCCCChhh--hcCCCchHHHHHHHHhcCCc
Q 018652 305 SGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~ 348 (352)
+.++.++... ..+|+.+.++++.. ++.|||++|++..+++++.+
T Consensus 412 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~ 458 (463)
T PRK06370 412 GVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458 (463)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhhh
Confidence 8888887755 45569999999833 68999999999999987643
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.9e-36 Score=290.95 Aligned_cols=315 Identities=18% Similarity=0.282 Sum_probs=231.8
Q ss_pred cCCceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652 3 YQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 80 (352)
Q Consensus 3 ~~~~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG 80 (352)
+..+|+.+|++.++|++.+| .++.||+||||||++|+ .|++||.+...+ +. ..+...+ ...+++++|||+|
T Consensus 115 ~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~--~~-~~~~~~l---~~~~~~vvViG~G 187 (468)
T PRK14694 115 LNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPVPGLAETPY--LT-STSALEL---DHIPERLLVIGAS 187 (468)
T ss_pred EEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCCCCCCCCce--Ec-chhhhch---hcCCCeEEEECCC
Confidence 34578889999999998887 37999999999999986 455666432222 22 1222222 2347899999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652 81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 160 (352)
Q Consensus 81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 160 (352)
++|+|+|..|+++|.+|+++++. ++++ .+++++.+.+++.|++.||++++++.+.+++.+ ++. ..+.+.++ ++++
T Consensus 188 ~~G~E~A~~l~~~g~~Vtlv~~~-~~l~-~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~ 262 (468)
T PRK14694 188 VVALELAQAFARLGSRVTVLARS-RVLS-QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRA 262 (468)
T ss_pred HHHHHHHHHHHHcCCeEEEEECC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEe
Confidence 99999999999999999999874 6666 378999999999999999999999999999754 222 23555444 6999
Q ss_pred CEEEEccCCCCCchhh--hhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652 161 DTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 161 D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 238 (352)
|.|++++|.+||++++ ++++++.++|+|.||++++|+.|+|||+|||+..+. ....|..+|+.+|.||
T Consensus 263 D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i 332 (468)
T PRK14694 263 EQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINM 332 (468)
T ss_pred CEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHh
Confidence 9999999999999874 567777777889999999999999999999997543 3445899999999999
Q ss_pred hcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EEE----------cCCCCcEEEEEEE--CC
Q 018652 239 LSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEI----------GNFDPKIATFWID--SG 296 (352)
Q Consensus 239 ~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~----------~~~~~~~~~~~~~--~~ 296 (352)
++... ..+..+|++.....+ +..+|....+ . ... .....-|.++.++ ++
T Consensus 333 ~~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~ 403 (468)
T PRK14694 333 TGGDASLDLSAMPEVIFTDPQ---------VATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSG 403 (468)
T ss_pred cCCCcccccCCCCeEEECCCC---------eEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCC
Confidence 86432 223445654221111 3344443210 0 000 0011235666553 59
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+|+|+++++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+..
T Consensus 404 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 458 (468)
T PRK14694 404 RLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFTK 458 (468)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhhc
Confidence 999999977788777655 456799999998 33 68999999999999887643
No 16
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.1e-36 Score=290.64 Aligned_cols=307 Identities=18% Similarity=0.251 Sum_probs=226.0
Q ss_pred CCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652 4 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG 83 (352)
Q Consensus 4 ~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 83 (352)
..++..+|++...+. .+|+.+.||+||||||++|. .|++||.+ ...+..+. ......+++++|||+|++|
T Consensus 109 ~g~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~-----~~~~~~~~---~~l~~~~~~vvVIGgG~~g 178 (446)
T TIGR01424 109 EGRARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE-----LGITSNEA---FHLPTLPKSILILGGGYIA 178 (446)
T ss_pred EEEEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc-----ceechHHh---hcccccCCeEEEECCcHHH
Confidence 346777777654443 46778999999999999986 45555532 11122222 2222357899999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652 84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163 (352)
Q Consensus 84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 163 (352)
+|+|..+++.|.+|+++++++++++. +++++...+.+.|+++||++++++.+.+++..+++ ..+.+.+|+++++|.+
T Consensus 179 ~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 179 VEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVV 255 (446)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEE
Confidence 99999999999999999999988874 88999999999999999999999999999754333 3566778889999999
Q ss_pred EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
|+|+|.+||++. ++..+++.+ +|++.||+++||+.|+|||+|||+..+. ....|..||+.+|.||++
T Consensus 256 iva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 256 LFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN----------LTPVAIMEATCFANTEFG 325 (446)
T ss_pred EEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc----------chhHHHHHHHHHHHHHhc
Confidence 999999999875 577788765 5779999999999999999999986432 444699999999999996
Q ss_pred CCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc--------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652 241 AQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET--IEI----------GNFDPKIATFWID--SG 296 (352)
Q Consensus 241 ~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~--~~~----------~~~~~~~~~~~~~--~~ 296 (352)
....+ +..+|+.....++ +...|.... +. ... .....-|.++.++ ++
T Consensus 326 ~~~~~~~~~~~p~~if~~p~---------ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~ 396 (446)
T TIGR01424 326 NNPTKFDHDLIATAVFSQPP---------LGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDD 396 (446)
T ss_pred CCCCccCcCCCCeEEeCCch---------hEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCC
Confidence 44333 3455654332222 233443221 00 000 1111235566553 68
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHH
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIA 342 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~ 342 (352)
+|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..+
T Consensus 397 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 397 KVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 999999988888887755 4567999999983 3 68999999998764
No 17
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1e-35 Score=288.36 Aligned_cols=308 Identities=21% Similarity=0.298 Sum_probs=227.3
Q ss_pred ECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652 11 DIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 88 (352)
Q Consensus 11 d~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~ 88 (352)
++....|.+++|+ ++.||+||||||++|+.+| .++...+.+++..++.+. ...+++++|||+|++|+|+|.
T Consensus 122 ~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p-~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~ 194 (466)
T PRK07845 122 GPHRVKVTTADGGEETLDADVVLIATGASPRILP-TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFAS 194 (466)
T ss_pred CCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHH
Confidence 3344455556675 6999999999999986443 223223445554333221 234689999999999999999
Q ss_pred HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
.|++.|.+||++++.+++++. ++++....+.+.|+++||++++++.+.+++..++ . ..+.+.+|+++++|.|++++|
T Consensus 195 ~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~g~~l~~D~vl~a~G 271 (466)
T PRK07845 195 AYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGD-G-VVVTLTDGRTVEGSHALMAVG 271 (466)
T ss_pred HHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-E-EEEEECCCcEEEecEEEEeec
Confidence 999999999999999999885 7899999999999999999999999999975433 3 246677888999999999999
Q ss_pred CCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC
Q 018652 169 AKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 245 (352)
Q Consensus 169 ~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 245 (352)
++||+.+ +++++++.+ +|+|.||++++|+.|||||+|||+..+. .+..|..||+.++.++++....+
T Consensus 272 ~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~ 341 (466)
T PRK07845 272 SVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSP 341 (466)
T ss_pred CCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCc
Confidence 9999885 578888865 5779999999999999999999997532 45669999999999999643222
Q ss_pred --CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------c--E-----------EEEcCCCCcEEEEEEE--CCEEEEE
Q 018652 246 --YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--T-----------IEIGNFDPKIATFWID--SGKLKGV 301 (352)
Q Consensus 246 --~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~-----------~~~~~~~~~~~~~~~~--~~~v~g~ 301 (352)
+..+|+ ..|..+- +..+|.... + . ...+. ..-|.++.++ +++|+|+
T Consensus 342 ~~~~~~p~---~vf~~p~------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~ 411 (466)
T PRK07845 342 LRLKTVAS---NVFTRPE------IATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGG 411 (466)
T ss_pred CCCCCCCE---EEeCCCc------ceeecCCHHHHHhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEE
Confidence 334554 3332110 222333211 0 0 01111 1235566553 5899999
Q ss_pred EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
++++.++.++... ..+|+++.++++ .. ++.||+++|++..+++.+..
T Consensus 412 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 461 (466)
T PRK07845 412 VVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLMA 461 (466)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhhc
Confidence 9988888877655 456799999988 23 67999999999999887654
No 18
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5.4e-36 Score=289.62 Aligned_cols=304 Identities=22% Similarity=0.323 Sum_probs=226.1
Q ss_pred ceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHH
Q 018652 6 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGME 85 (352)
Q Consensus 6 ~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 85 (352)
+++.+| .++|++ +|+++.||+||||||++|+ .|+++|. ..+.+.. .+......+++++|||+|++|+|
T Consensus 114 ~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~-----~~~~~~~---~~~~~~~~~~~vvViGgG~~g~E 181 (450)
T PRK06116 114 FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA-----EYGITSD---GFFALEELPKRVAVVGAGYIAVE 181 (450)
T ss_pred EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc-----ceeEchh---HhhCccccCCeEEEECCCHHHHH
Confidence 455554 457777 6778999999999999986 4544442 2222222 22222345789999999999999
Q ss_pred HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 86 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 86 ~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
+|..|++.|.+|+++++++.+++ .+++++...+.+.|+++||++++++++.+++..+++.+ .+.+.+|+++++|.||+
T Consensus 182 ~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~ 259 (450)
T PRK06116 182 FAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIW 259 (450)
T ss_pred HHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEE
Confidence 99999999999999999988876 58999999999999999999999999999986544433 56778888999999999
Q ss_pred ccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652 166 GIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 242 (352)
Q Consensus 166 a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 242 (352)
++|.+|+++. ++.++++.+ +|+|.||+++||++|+|||+|||+..+. .+..|..||+.+|+||++..
T Consensus 260 a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 260 AIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE----------LTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred eeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC----------cHHHHHHHHHHHHHHHhCCC
Confidence 9999999985 567788775 5779999999999999999999986432 45569999999999998643
Q ss_pred C-C--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------c--EEE-Ec-----------CCCCcEEEEEEE--CC
Q 018652 243 T-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIE-IG-----------NFDPKIATFWID--SG 296 (352)
Q Consensus 243 ~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~~-~~-----------~~~~~~~~~~~~--~~ 296 (352)
. . .+..+|+. .|+.+- +..+|.... + ... .. +...-+.++.++ ++
T Consensus 330 ~~~~~~~~~~p~~---if~~p~------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~ 400 (450)
T PRK06116 330 PDEKLDYSNIPTV---VFSHPP------IGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEE 400 (450)
T ss_pred CCCcCCcCCCCeE---EeCCCc------cEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCC
Confidence 3 1 34556654 344321 333443221 1 110 00 011235666654 58
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHH
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA 342 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~ 342 (352)
+|+|+++++.++.++... ..+|+.+.++++ .+ ++.||+++|++..+
T Consensus 401 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 401 KVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 999999988888777654 556799999988 33 68999999999875
No 19
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=288.11 Aligned_cols=307 Identities=22% Similarity=0.300 Sum_probs=224.0
Q ss_pred EEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 16 TLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 16 ~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
.|.+.+|+ +++||+||||||++|.. +||...++.+.+. +..+......+++++|||+|++|+|+|..|++.
T Consensus 124 ~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~ 196 (466)
T PRK06115 124 VVKAEDGSETQLEAKDIVIATGSEPTP---LPGVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRL 196 (466)
T ss_pred EEEcCCCceEEEEeCEEEEeCCCCCCC---CCCCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 34455663 69999999999999853 3454455554443 222333234689999999999999999999999
Q ss_pred CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-C--CCCEEEcCEEEEccCCC
Q 018652 94 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAK 170 (352)
Q Consensus 94 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~--~g~~i~~D~vi~a~G~~ 170 (352)
|.+||++++.+++++. ++++....+++.|++.||++++++.+++++..+++....+.. . +++++++|.|++++|++
T Consensus 197 G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 197 GAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 9999999999999885 889999999999999999999999999998543332222222 1 23579999999999999
Q ss_pred CCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCC
Q 018652 171 PTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYD 247 (352)
Q Consensus 171 p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~ 247 (352)
||++. ++..++..+.+++.||++++|+.|+|||+|||+..+. ....|.+||+.+|+||++... ..+.
T Consensus 276 pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~ 345 (466)
T PRK06115 276 PYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYG 345 (466)
T ss_pred cccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99885 4566777765568899999999999999999997532 445699999999999986432 2345
Q ss_pred CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCcEEEEEEE--CCEEEEEEeec
Q 018652 248 YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPKIATFWID--SGKLKGVLVES 305 (352)
Q Consensus 248 ~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~~~~~~~~--~~~v~g~~~~~ 305 (352)
.+|+......+ +..+|.... +.. ..++ ..-|.++.++ +++|+|+++++
T Consensus 346 ~~p~~~~t~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g 415 (466)
T PRK06115 346 LIPGVIYTRPE---------VATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVG 415 (466)
T ss_pred CCCeEEECCcc---------cEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEEC
Confidence 56764332222 333443321 010 0111 1235556554 58999999988
Q ss_pred CCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652 306 GSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA 350 (352)
Q Consensus 306 ~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~ 350 (352)
.++.++... ..+|+.+.++++ .. ++.||+++|.+..+++.+..++
T Consensus 416 ~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~~ 463 (466)
T PRK06115 416 PSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWA 463 (466)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcch
Confidence 888887654 456799999988 33 6799999999999998776654
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1e-35 Score=288.74 Aligned_cols=314 Identities=25% Similarity=0.363 Sum_probs=229.9
Q ss_pred CceEEEECCCcEEEeCC-CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652 5 DPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG 83 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~~-g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 83 (352)
.+++.+|+....|...+ ++.+.||+||||||++|..+ ||...++.. +.+..+...+ ...+++++|||+|++|
T Consensus 112 g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~~~~-v~~~~~~~~~---~~~~~~vvVvGgG~~g 184 (462)
T PRK06416 112 GEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEIDGRV-IWTSDEALNL---DEVPKSLVVIGGGYIG 184 (462)
T ss_pred EEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCCCCe-EEcchHhhCc---cccCCeEEEECCCHHH
Confidence 45666666666665433 46799999999999998643 343334432 2223333322 2356899999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEc
Q 018652 84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDA 160 (352)
Q Consensus 84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~ 160 (352)
+|+|..|+++|.+||++++.+++++. +++++.+.+++.+++.||++++++++++++.+++ . ..+.+.++ +++++
T Consensus 185 ~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~ 261 (462)
T PRK06416 185 VEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEA 261 (462)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEe
Confidence 99999999999999999999998874 8899999999999999999999999999986433 2 24555555 67999
Q ss_pred CEEEEccCCCCCchhh--hhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652 161 DTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 161 D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 238 (352)
|.+|+++|.+|+++++ ++++++.++|++.||+++||+.|+|||+|||+..+. .+..|..||+.+|.||
T Consensus 262 D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~----------~~~~A~~~g~~aa~ni 331 (462)
T PRK06416 262 DYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPM----------LAHKASAEGIIAAEAI 331 (462)
T ss_pred CEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCcc----------hHHHHHHHHHHHHHHH
Confidence 9999999999998874 677887777789999999999999999999996432 5567999999999999
Q ss_pred hcCCCCCC--CCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEE--E
Q 018652 239 LSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWI--D 294 (352)
Q Consensus 239 ~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~--~ 294 (352)
++. ..++ ..+|++ ..++.. +..+|....+ . .. .+. ..-+.++.+ +
T Consensus 332 ~~~-~~~~~~~~~~~~--~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~~~~ 400 (462)
T PRK06416 332 AGN-PHPIDYRGIPAV--TYTHPE-------VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGE-TDGFVKLIFDKK 400 (462)
T ss_pred cCC-CCCCCCCCCCeE--EECCCc-------eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCC-CceEEEEEEECC
Confidence 963 3333 334443 222211 3445543221 0 00 011 122555555 3
Q ss_pred CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652 295 SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE 349 (352)
Q Consensus 295 ~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~ 349 (352)
+++|+|+++++.++.++... ..+|+.+.++++ .. +..||+++|++..+++.+.+.
T Consensus 401 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~ 458 (462)
T PRK06416 401 DGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGK 458 (462)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhccC
Confidence 69999999988888887754 456799999988 33 678999999999998876543
No 21
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=287.83 Aligned_cols=313 Identities=17% Similarity=0.255 Sum_probs=226.0
Q ss_pred ceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652 6 PVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG 83 (352)
Q Consensus 6 ~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 83 (352)
++..+|+....|...+| .++.||+||||||++|+.+|.+++ ..+++.+ ..+... ....+++++|||+|++|
T Consensus 114 ~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~~v~~---~~~~~~---~~~~~~~vvIiGgG~iG 186 (471)
T PRK06467 114 LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDPRIWD---STDALE---LKEVPKRLLVMGGGIIG 186 (471)
T ss_pred EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCCcEEC---hHHhhc---cccCCCeEEEECCCHHH
Confidence 34444443334555566 479999999999999875554443 2334432 222222 22457899999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC--C--CEEE
Q 018652 84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STID 159 (352)
Q Consensus 84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~ 159 (352)
+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|++. |++++++.+++++..+++ + .+.+.+ + ++++
T Consensus 187 ~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~ 262 (471)
T PRK06467 187 LEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQR 262 (471)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEE
Confidence 99999999999999999999999985 8999999999999988 999999999999754332 2 344433 2 4699
Q ss_pred cCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652 160 ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236 (352)
Q Consensus 160 ~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 236 (352)
+|.||+++|++||+++ ++.++++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..+|+.+|.
T Consensus 263 ~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~----------la~~A~~eG~~aa~ 332 (471)
T PRK06467 263 YDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM----------LAHKGVHEGHVAAE 332 (471)
T ss_pred eCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcc----------cHHHHHHHHHHHHH
Confidence 9999999999999985 467788875 6779999999999999999999986432 44569999999999
Q ss_pred HHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E-------------EEEcCCCCcEEEEEEE-
Q 018652 237 ALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-------------IEIGNFDPKIATFWID- 294 (352)
Q Consensus 237 ~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~-------------~~~~~~~~~~~~~~~~- 294 (352)
+|++... ..+..+|+.. |..+. +..+|....+ . ...+. ..-|.++.++
T Consensus 333 ~i~g~~~~~~~~~~p~~~---~~~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~ 402 (471)
T PRK06467 333 VIAGKKHYFDPKVIPSIA---YTEPE------VAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDC-ADGMTKLIFDK 402 (471)
T ss_pred HHcCCCCCCCCCCCCeEE---ECCCc------eeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCC-CceEEEEEEEC
Confidence 9986432 2234466542 22111 3344443211 0 00111 1235666554
Q ss_pred -CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCcc
Q 018652 295 -SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE 349 (352)
Q Consensus 295 -~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~~ 349 (352)
+++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..|++.+.++
T Consensus 403 ~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~ 461 (471)
T PRK06467 403 ETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGS 461 (471)
T ss_pred CCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCC
Confidence 58999999988888887644 4557899998882 2 679999999999999876654
No 22
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.9e-35 Score=284.99 Aligned_cols=299 Identities=23% Similarity=0.308 Sum_probs=221.1
Q ss_pred CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652 13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 92 (352)
Q Consensus 13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~ 92 (352)
++++|.+ +++.+.||+||||||++|+.++.+||.. ...+ .+.+......+++++|||||++|+|+|..|++
T Consensus 117 ~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~ 187 (450)
T TIGR01421 117 KDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-----LGTD---SDGFFALEELPKRVVIVGAGYIAVELAGVLHG 187 (450)
T ss_pred cCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-----eeEc---HHHhhCccccCCeEEEECCCHHHHHHHHHHHH
Confidence 4556666 5667999999999999986432445432 2112 22333333457999999999999999999999
Q ss_pred CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCC
Q 018652 93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP 171 (352)
Q Consensus 93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p 171 (352)
.|.+||++++.+++++ .+++++.+.+++.|+++||++++++.+++++...++. ..+.+++| +++++|.|++++|++|
T Consensus 188 ~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 188 LGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred cCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCc
Confidence 9999999999999886 4899999999999999999999999999998543332 35667777 5799999999999999
Q ss_pred Cchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CC
Q 018652 172 TVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HT 245 (352)
Q Consensus 172 ~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~ 245 (352)
|+++ ++.++++.+ +|++.||++++|+.|+|||+|||+..+. .+..|..+|+.+|++|+++.. ..
T Consensus 266 n~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~ 335 (450)
T TIGR01421 266 NTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLD 335 (450)
T ss_pred CcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 9985 577888875 5779999999999999999999996432 445699999999999985432 23
Q ss_pred CCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EE-E------------EcCCCCcEEEEEEE--CCEEEEE
Q 018652 246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TI-E------------IGNFDPKIATFWID--SGKLKGV 301 (352)
Q Consensus 246 ~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~------------~~~~~~~~~~~~~~--~~~v~g~ 301 (352)
+..+|+. .|..+- +..+|....+ .. . .+. ..-+.++.++ +++|+|+
T Consensus 336 ~~~~p~~---~f~~p~------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~ 405 (450)
T TIGR01421 336 YNNVPTV---VFSHPP------IGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEK-QKCRMKLVCAGKEEKVVGL 405 (450)
T ss_pred cccCCeE---EeCCCc------eEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCC-CceEEEEEEECCCCEEEEE
Confidence 4556654 333211 2333432210 00 0 011 1225555443 6999999
Q ss_pred EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHH
Q 018652 302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA 342 (352)
Q Consensus 302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~ 342 (352)
++++.++.++... ..+|+.+.++++ .+ ++.||+++|++..+
T Consensus 406 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 406 HGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 9988888888755 456799999988 33 68999999988764
No 23
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.1e-35 Score=285.90 Aligned_cols=291 Identities=21% Similarity=0.288 Sum_probs=215.4
Q ss_pred eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEE
Q 018652 23 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTI 99 (352)
Q Consensus 23 ~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtv 99 (352)
+.+.||+||||||++|. .|+++|.+ .+ .+..+.. .....+++++|||||++|+|+|..+..+ |.+||+
T Consensus 148 ~~~~~d~lIIATGs~p~-~p~i~G~~--~~---~~~~~~~---~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl 218 (486)
T TIGR01423 148 ERLQAEHILLATGSWPQ-MLGIPGIE--HC---ISSNEAF---YLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL 218 (486)
T ss_pred eEEECCEEEEecCCCCC-CCCCCChh--he---echhhhh---ccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence 47999999999999986 45555522 12 2223222 2224579999999999999999877654 999999
Q ss_pred EecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh--hh
Q 018652 100 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE 177 (352)
Q Consensus 100 v~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~ 177 (352)
+++.+++++ .+++++.+.+.+.|+++||++++++.+++++..+++. ..+.+.+|+++++|.+++++|++|++.+ ++
T Consensus 219 i~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~ 296 (486)
T TIGR01423 219 CYRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD 296 (486)
T ss_pred EecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCch
Confidence 999999887 5899999999999999999999999999998543332 3566778889999999999999999886 46
Q ss_pred hcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCeeee
Q 018652 178 RVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYS 254 (352)
Q Consensus 178 ~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~p~~~~ 254 (352)
.++++.+ +|+|.||+++||+.|||||+|||+..+. ....|..||+.+|+||++.... .+..+|+...
T Consensus 297 ~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vf 366 (486)
T TIGR01423 297 KVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVF 366 (486)
T ss_pred hhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEe
Confidence 7788765 5779999999999999999999986432 3345999999999999964332 3344665433
Q ss_pred eccCcCCCCcceeeEEeecCccc-------E--E----------EEcCC-CCcEEEEEEE--CCEEEEEEeecCCHHHhh
Q 018652 255 RVFEYEGSPRKVWWQFFGDNVGE-------T--I----------EIGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQ 312 (352)
Q Consensus 255 ~~~~~~g~~~~~~~~~~G~~~~~-------~--~----------~~~~~-~~~~~~~~~~--~~~v~g~~~~~~~~~~~~ 312 (352)
..++ +..+|....+ . . ..+.. ..-|.++.++ +++|+|+++++.++.++.
T Consensus 367 t~pe---------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI 437 (486)
T TIGR01423 367 SIPP---------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEII 437 (486)
T ss_pred CCCc---------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 2222 2333332210 0 0 00111 1225566553 589999999888888877
Q ss_pred HH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652 313 LL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR 343 (352)
Q Consensus 313 ~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~ 343 (352)
.. ..+|+.+.++++ .. ++.||+++|++..+.
T Consensus 438 ~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 438 QAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred HHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 55 455699999988 33 689999999999886
No 24
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.2e-35 Score=283.58 Aligned_cols=303 Identities=24% Similarity=0.307 Sum_probs=223.9
Q ss_pred CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652 13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 92 (352)
Q Consensus 13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~ 92 (352)
+.++|.+.+|++++||+||||||++|.. |+..+ ..+++. .+..+...+. ..+++++|||+|++|+|+|..|++
T Consensus 118 ~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~~-~~~~~~~~l~---~~~k~vvVIGgG~ig~E~A~~l~~ 190 (452)
T TIGR03452 118 GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVRY-HTNEDIMRLP---ELPESLVIVGGGYIAAEFAHVFSA 190 (452)
T ss_pred cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCEE-EcHHHHHhhh---hcCCcEEEECCCHHHHHHHHHHHh
Confidence 5678888888889999999999999864 43222 234333 3444444433 357899999999999999999999
Q ss_pred CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.|.+|+++++.+++++ .+++++...+.+.+ +.+|++++++.+++++..++ . ..+.+.+|+++++|.+++++|.+||
T Consensus 191 ~G~~Vtli~~~~~ll~-~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 191 LGTRVTIVNRSTKLLR-HLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGD-G-VTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred CCCcEEEEEccCcccc-ccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCC-e-EEEEEcCCCEEEcCEEEEeeccCcC
Confidence 9999999999988876 47899988887755 46899999999999985433 2 3466778889999999999999999
Q ss_pred chh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCC
Q 018652 173 VSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTY 246 (352)
Q Consensus 173 ~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~ 246 (352)
+++ ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..||+.+|+||++... ..+
T Consensus 267 ~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~ 336 (452)
T TIGR03452 267 GDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARVVKHNLLHPNDLRKMPH 336 (452)
T ss_pred CCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHHHHHHhcCCCCcccCCC
Confidence 987 456788875 5779999999999999999999997532 233489999999999986432 234
Q ss_pred CCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--E-----------EEcCCCCcEEEEEEE--CCEEEEEEee
Q 018652 247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I-----------EIGNFDPKIATFWID--SGKLKGVLVE 304 (352)
Q Consensus 247 ~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~-----------~~~~~~~~~~~~~~~--~~~v~g~~~~ 304 (352)
..+|+......+ +..+|....+ . . ..+. ..-|.++.++ +++|+|++++
T Consensus 337 ~~~p~~i~t~p~---------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Klv~d~~t~~ilG~~~v 406 (452)
T TIGR03452 337 DFVPSAVFTHPQ---------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMED-TTGFCKLIADRDTGKLLGAHII 406 (452)
T ss_pred CCCCeEEECCCC---------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCC-CCeEEEEEEECCCCEEEEEEEE
Confidence 456654221111 3334433211 0 0 0011 1235555553 6999999998
Q ss_pred cCCHHHhhHHH-HHHhCCCCCCh-hh--hcCCCchHHHHHHHHhcC
Q 018652 305 SGSPEEFQLLP-TLARSQPFVDK-AK--LQQASSVEEALEIARAAL 346 (352)
Q Consensus 305 ~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~e~~~~~~~~~ 346 (352)
+.++.++.... .+|+.+.++++ .. ++.||+++|++..+++.+
T Consensus 407 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 407 GPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 88888776554 45699999988 33 468999999999998764
No 25
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.7e-35 Score=288.21 Aligned_cols=306 Identities=16% Similarity=0.262 Sum_probs=218.9
Q ss_pred CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 018652 20 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 99 (352)
Q Consensus 20 ~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtv 99 (352)
++|++++||+||||||++|+ .|.++|.+ .+ + +.+ .+.. +..+++++|||+|++|+|+|..|+++|.+||+
T Consensus 196 ~~g~~i~ad~lVIATGS~P~-~P~IpG~~--~v--~-ts~---~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl 265 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPI-FPDVKGKE--FT--I-SSD---DFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYI 265 (561)
T ss_pred CCCcEEECCEEEEecCCCCC-CCCCCCce--eE--E-EHH---HHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence 56778999999999999986 45555532 12 2 222 2222 23489999999999999999999999999999
Q ss_pred EecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCCchhhh-
Q 018652 100 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE- 177 (352)
Q Consensus 100 v~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~~~- 177 (352)
+++++++++ .+++++.+.+.+.|++.||+++++..+.+++..+++.+ .+.+.+ ++++++|.|++++|++||++++.
T Consensus 266 i~~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l 343 (561)
T PTZ00058 266 FARGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL 343 (561)
T ss_pred EEecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCc
Confidence 999998886 58999999999999999999999999999986433333 233334 45799999999999999998763
Q ss_pred -hcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHH
Q 018652 178 -RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQ 232 (352)
Q Consensus 178 -~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~ 232 (352)
..++..++|+|.||+++||+.|+|||+|||+..+.. ..+... .......|..+|+
T Consensus 344 ~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~ 423 (561)
T PTZ00058 344 KALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGR 423 (561)
T ss_pred cccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHH
Confidence 344445568899999999999999999999984321 111111 2446777999999
Q ss_pred HHHHHHhcCCC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-------------E---cCCC
Q 018652 233 HCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-------------I---GNFD 285 (352)
Q Consensus 233 ~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-------------~---~~~~ 285 (352)
.+|.||++... ..+..+|+. .|+.+- +..+|....+ ... . +...
T Consensus 424 ~aa~ni~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (561)
T PTZ00058 424 LLADRLFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKE 494 (561)
T ss_pred HHHHHHhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCC
Confidence 99999986422 234455654 333210 2223322110 000 0 0011
Q ss_pred CcEEEEEEE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcC
Q 018652 286 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAAL 346 (352)
Q Consensus 286 ~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~ 346 (352)
.-+.++.++ +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..++..+
T Consensus 495 ~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 495 KTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 235555553 68999999988888887654 4567999999883 3 689999999998887654
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.8e-35 Score=284.72 Aligned_cols=306 Identities=23% Similarity=0.323 Sum_probs=225.3
Q ss_pred CCcEEEeCCCe-EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652 13 EKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 13 ~~~~V~~~~g~-~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
+.++|.+++|+ .+.||+||||||++|+ .|.+||.+..++++. .+ +......+++++|||+|.+|+|+|..|+
T Consensus 114 ~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~~~~---~~---~~~~~~~~~~vvIIGgG~~g~E~A~~l~ 186 (463)
T TIGR02053 114 DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGYLTS---EE---ALALDRIPESLAVIGGGAIGVELAQAFA 186 (463)
T ss_pred cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCceECc---hh---hhCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 45778887754 6899999999999986 466666544444332 22 2222234689999999999999999999
Q ss_pred hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCCEEEcCEEEEccC
Q 018652 92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIG 168 (352)
Q Consensus 92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~~i~~D~vi~a~G 168 (352)
++|.+||++++.+++++. +++++...+++.+++.||++++++++++++.+++. ..+.+. +++++++|.||+++|
T Consensus 187 ~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G 263 (463)
T TIGR02053 187 RLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATG 263 (463)
T ss_pred HcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeEC
Confidence 999999999999998875 78999999999999999999999999999854322 233332 235799999999999
Q ss_pred CCCCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC
Q 018652 169 AKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 245 (352)
Q Consensus 169 ~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 245 (352)
.+|+++ + ++..+++.+ +|+|.||+++||+.|+|||+|||+..+. .+..|..||+.+|.||++....+
T Consensus 264 ~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~ 333 (463)
T TIGR02053 264 RRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ----------LEYVAAKEGVVAAENALGGANAK 333 (463)
T ss_pred CCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCc
Confidence 999998 4 677788765 5789999999999999999999997532 45569999999999998642333
Q ss_pred --CCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEEE--CCEEEEE
Q 018652 246 --YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGV 301 (352)
Q Consensus 246 --~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~v~g~ 301 (352)
+..+|+. .|... .+..+|....+ . .. .+. ..-+.++.++ +++|+|+
T Consensus 334 ~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~ 403 (463)
T TIGR02053 334 LDLLVIPRV---VFTDP------AVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRD-TRGFIKLVAEPGTGKVLGV 403 (463)
T ss_pred cCcCCCCeE---EeccC------ceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCC-CcEEEEEEEECCCCEEEEE
Confidence 3344543 22211 13444443210 0 00 011 1235566554 5899999
Q ss_pred EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
++++.++.++... ..+|+.+.++++ .. ...||+++|.+..|++.+..
T Consensus 404 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~~ 453 (463)
T TIGR02053 404 QVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFYR 453 (463)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhhc
Confidence 9988888887755 456789988888 33 56899999999999987653
No 27
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.7e-35 Score=284.53 Aligned_cols=317 Identities=22% Similarity=0.317 Sum_probs=227.6
Q ss_pred cCCceEEEECC-------CcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCe
Q 018652 3 YQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 73 (352)
Q Consensus 3 ~~~~V~~id~~-------~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 73 (352)
+..+++.+|+. ...|.+.+| .++.||+||||||++|+.+| +...++.+.+ +..+... ....+++
T Consensus 110 ~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p---~~~~~~~~~~-~~~~~~~---~~~~~~~ 182 (472)
T PRK05976 110 FHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP---GLPFDGEYVI-SSDEALS---LETLPKS 182 (472)
T ss_pred EEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC---CCCCCCceEE-cchHhhC---ccccCCE
Confidence 34567778877 567777777 57999999999999986443 2223343333 2222322 2234789
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652 74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 153 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~ 153 (352)
++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|++.||++++++.+++++...++.+..+.+.
T Consensus 183 vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~ 261 (472)
T PRK05976 183 LVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEH 261 (472)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEe
Confidence 999999999999999999999999999999988874 7899999999999999999999999999974212333344455
Q ss_pred CCC--EEEcCEEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 154 DGS--TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 154 ~g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
+|+ ++++|.+++++|.+|+++. ++..++..++|++.||++++|+.|+|||+|||+..+. .+..|..
T Consensus 262 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~----------~~~~A~~ 331 (472)
T PRK05976 262 NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQ----------LAHVAMA 331 (472)
T ss_pred CCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCcc----------cHHHHHH
Confidence 663 6999999999999999875 3556665566889999999999999999999986431 4556999
Q ss_pred HHHHHHHHHhcCCCCCCC--CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCc
Q 018652 230 SAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPK 287 (352)
Q Consensus 230 ~g~~aa~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~ 287 (352)
+|+.+|++|++....+++ ..|+. ..++.. +..+|.... +.. ..+. ..-
T Consensus 332 ~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g 401 (472)
T PRK05976 332 EGEMAAEHIAGKKPRPFDYAAIPAC--CYTDPE-------VASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGE-SDG 401 (472)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCEE--EECcCc-------eEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCC-Cce
Confidence 999999999864323333 34432 111111 233333221 000 0111 123
Q ss_pred EEEEEEE--CCEEEEEEeecCCHHHhhH-HHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652 288 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP 347 (352)
Q Consensus 288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~ 347 (352)
+.++.++ +++|+|+++++.++.++.. +..+|+.+.++++ .. ++.||+++|.+..+++.+.
T Consensus 402 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 402 FVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466 (472)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence 5555554 5899999998888887765 4556799999988 33 6799999999999987653
No 28
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.7e-35 Score=289.75 Aligned_cols=306 Identities=22% Similarity=0.307 Sum_probs=226.5
Q ss_pred CceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652 5 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM 84 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 84 (352)
.+++.+|+ ++|.+ +|+.+.||+||||||++|. .|.+|| +..+. +++.+......+++++|||+|++|+
T Consensus 198 G~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~-~P~IpG-----~~~v~---~~~~~l~~~~~~k~V~VIGgG~iGv 265 (558)
T PLN02546 198 GRGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF-IPDIPG-----IEHAI---DSDAALDLPSKPEKIAIVGGGYIAL 265 (558)
T ss_pred eEEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-CCCCCC-----hhhcc---CHHHHHhccccCCeEEEECCCHHHH
Confidence 34555555 45665 5778999999999999986 455444 22222 2334444445689999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
|+|..|++.|.+|+++++.+++++ .+++++...+++.|+++||++++++.+.++...+++.+ .+.+.+++...+|.|+
T Consensus 266 E~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Vi 343 (558)
T PLN02546 266 EFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVM 343 (558)
T ss_pred HHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEE
Confidence 999999999999999999998887 58999999999999999999999999999975444433 4555666555699999
Q ss_pred EccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 165 IGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 165 ~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
+++|++||+++ +++++++.+ +|+|.||+++||++|+|||+|||+..+. .+..|..+|+.+|+||++.
T Consensus 344 va~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 344 FATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGN 413 (558)
T ss_pred EeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence 99999999985 578888875 5789999999999999999999997432 4556999999999999964
Q ss_pred CC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--E----------EEcCCCCcEEEEEEE--CCEE
Q 018652 242 QT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I----------EIGNFDPKIATFWID--SGKL 298 (352)
Q Consensus 242 ~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~----------~~~~~~~~~~~~~~~--~~~v 298 (352)
.. ..+..+|+ ..|+++- +..+|....+ . . ..+....-|.++.++ +++|
T Consensus 414 ~~~~~~~~~vp~---~vft~Pe------ia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~I 484 (558)
T PLN02546 414 EPTKPDYRAVPS---AVFSQPP------IGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKV 484 (558)
T ss_pred CCCcCCCCCCCE---EEeCCch------HhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEE
Confidence 32 23455665 3454311 2222322110 0 0 011111236666553 5899
Q ss_pred EEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHH
Q 018652 299 KGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIAR 343 (352)
Q Consensus 299 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~ 343 (352)
+|+++++.++.++... ..+|+.+.++++- . ++.||+++|.+..++
T Consensus 485 LGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 485 LGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR 532 (558)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence 9999988888887755 4567999999883 3 689999999998876
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.5e-35 Score=291.53 Aligned_cols=314 Identities=19% Similarity=0.279 Sum_probs=226.6
Q ss_pred CCceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 4 QDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 4 ~~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
..++..+|+....|.+.+|+ +++||+||||||++|+ .|+++|.+... ++...+ .......+++++|||+|+
T Consensus 208 ~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~--~~~~~~----~~~~~~~~~~vvViGgG~ 280 (561)
T PRK13748 208 HGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIPGLKETP--YWTSTE----ALVSDTIPERLAVIGSSV 280 (561)
T ss_pred EEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCCCCCccc--eEccHH----HhhcccCCCeEEEECCCH
Confidence 34556677766677776663 6999999999999986 45566632211 222211 111223578999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 161 (352)
+|+|+|..|+++|.+|+++++. .+++. +++++++.+++.|++.||++++++.+++++.. ++. ..+.+.++ ++++|
T Consensus 281 ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D 355 (561)
T PRK13748 281 VALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRAD 355 (561)
T ss_pred HHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeC
Confidence 9999999999999999999985 46654 78999999999999999999999999999754 332 24555554 69999
Q ss_pred EEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652 162 TIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 162 ~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 238 (352)
.|++++|.+||+.+ +++++++.+ +|+|.||+++||+.|||||+|||+..+. ....|..+|+.+|.||
T Consensus 356 ~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i 425 (561)
T PRK13748 356 KLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINM 425 (561)
T ss_pred EEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHH
Confidence 99999999999975 577888875 5779999999999999999999997643 3345899999999999
Q ss_pred hcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652 239 LSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SG 296 (352)
Q Consensus 239 ~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~ 296 (352)
++... .++...|+.. .++.. +..+|.... +. ... +....-|.++.++ ++
T Consensus 426 ~g~~~~~~~~~~p~~~--~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~ 496 (561)
T PRK13748 426 TGGDAALDLTAMPAVV--FTDPQ-------VATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSG 496 (561)
T ss_pred cCCCcccCCCCCCeEE--EccCC-------ceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCC
Confidence 86432 1233455432 11111 333443321 00 000 0011336666664 68
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCc
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+|+|+++++..+.++... ..+|+.+.++++. . ++.|||++|.+..+++.+..
T Consensus 497 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 551 (561)
T PRK13748 497 RLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNK 551 (561)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHhhc
Confidence 999999988788777644 4567999999883 2 67999999999999987643
No 30
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.2e-35 Score=282.36 Aligned_cols=313 Identities=25% Similarity=0.366 Sum_probs=225.9
Q ss_pred ceEEEE-----CCCcEEEe--CCC--eEEecCeEEEccCCCCCCCCCCCCCCC-CcEEEecCHHHHHHHHHhhcCCCeEE
Q 018652 6 PVTSID-----IEKQTLIT--NSG--KLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSLEKAKKVV 75 (352)
Q Consensus 6 ~V~~id-----~~~~~V~~--~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~-~~v~~~~~~~~~~~~~~~~~~~~~vv 75 (352)
.|+.|+ .+.++|.+ .+| .+++||+||||||++|+.+ |+.+. ..+++. .+. +. ....+++++
T Consensus 106 ~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~~~~v~~~---~~~--~~-~~~~~~~vv 176 (466)
T PRK07818 106 KITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSLSENVVTY---EEQ--IL-SRELPKSIV 176 (466)
T ss_pred CCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCCCCcEEch---HHH--hc-cccCCCeEE
Confidence 455555 34555444 454 3699999999999998643 34322 233332 211 11 123578999
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--C
Q 018652 76 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--E 153 (352)
Q Consensus 76 VvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~ 153 (352)
|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|+++||++++++.+++++.. ++.+ .+.+ .
T Consensus 177 VIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~ 253 (466)
T PRK07818 177 IAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKK 253 (466)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEec
Confidence 9999999999999999999999999999999885 78999999999999999999999999999754 2222 3333 3
Q ss_pred CC--CEEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHH
Q 018652 154 DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 228 (352)
Q Consensus 154 ~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 228 (352)
+| +++++|.|++++|.+||+++ ++..++..+ +|+|.||+++||+.|+|||+|||+..+. .+..|.
T Consensus 254 ~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~----------l~~~A~ 323 (466)
T PRK07818 254 DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQ----------LAHVAE 323 (466)
T ss_pred CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcc----------cHhHHH
Confidence 56 36999999999999999885 577888764 5779999999999999999999986421 556699
Q ss_pred HHHHHHHHHHhcCCCC---CCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCC
Q 018652 229 QSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFD 285 (352)
Q Consensus 229 ~~g~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~ 285 (352)
.||+.+|.||++.... .+..+|+......+ +.++|....+ . .. .+. .
T Consensus 324 ~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~ 393 (466)
T PRK07818 324 AQGVVAAETIAGAETLELGDYRMMPRATFCQPQ---------VASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGD-P 393 (466)
T ss_pred HHHHHHHHHHcCCCCCccCccCCCCeEEECCCC---------eEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCC-C
Confidence 9999999999964322 34455653211111 3334433210 0 00 111 1
Q ss_pred CcEEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652 286 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA 350 (352)
Q Consensus 286 ~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~ 350 (352)
.-|.++.++ +++|+|+++++.++.++.... .+|+.+.++++ .. ++.||+++|++..+++.+..++
T Consensus 394 ~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~ 463 (466)
T PRK07818 394 TGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGHM 463 (466)
T ss_pred CeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcCc
Confidence 235555554 589999999888888877554 55789999988 33 6899999999999998876653
No 31
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.4e-35 Score=283.35 Aligned_cols=309 Identities=19% Similarity=0.269 Sum_probs=227.9
Q ss_pred CceEEEECCCcEEEeCCCe-EEecCeEEEccCCCCCCCCCCCCCC-CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652 5 DPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYI 82 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~~g~-~~~yd~lViAtG~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 82 (352)
.++..+|++...|.+.++. ++.||+||||||++|. .|+++|.. .+++++. ..+......+++++|||+|++
T Consensus 97 g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~~------~~~~~~~~~~~~v~ViGgG~~ 169 (441)
T PRK08010 97 GQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYDS------TGLLNLKELPGHLGILGGGYI 169 (441)
T ss_pred EEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEECh------hHhhcccccCCeEEEECCCHH
Confidence 4566777777777777775 6999999999999986 46666642 4555432 223333346789999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCE
Q 018652 83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 162 (352)
Q Consensus 83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~ 162 (352)
|+|+|..|++.|.+|+++++++++++. +++++...+.+.|+++||++++++.+++++.. ++.+ .+.++++ ++++|.
T Consensus 170 g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~ 245 (441)
T PRK08010 170 GVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDA 245 (441)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCE
Confidence 999999999999999999999988875 68899999999999999999999999999854 2322 4555555 589999
Q ss_pred EEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 163 IVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 163 vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+++++|.+||+++ +++++++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..+|+.++.+|+
T Consensus 246 vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 246 LLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELL 315 (441)
T ss_pred EEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHc
Confidence 9999999999876 467788765 5789999999999999999999997542 22338889999999998
Q ss_pred cCCCC---CCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-----------EcCCCCcEEEEEEE--
Q 018652 240 SAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-----------IGNFDPKIATFWID-- 294 (352)
Q Consensus 240 ~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-----------~~~~~~~~~~~~~~-- 294 (352)
+.... .+..+|+. .|..+- +..+|....+ ... .++. ..+.++.++
T Consensus 316 g~~~~~~~~~~~~p~~---~~~~p~------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~kli~d~~ 385 (441)
T PRK08010 316 GEGKRSTDDRKNVPYS---VFMTPP------LSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT-RGVLKAIVDNK 385 (441)
T ss_pred CCCCcccCccCCCCEE---EECCCC------ceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC-ceEEEEEEECC
Confidence 63221 23345643 221110 3334433210 000 1111 225666653
Q ss_pred CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh--hhhcCCCchHHHHHHHHh
Q 018652 295 SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIARA 344 (352)
Q Consensus 295 ~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~ 344 (352)
+++|+|+++++.++.++.... .+|.++.++++ ..++.||+++|.+..++.
T Consensus 386 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 386 TQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 699999999888888777554 45689999888 336899999999988764
No 32
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-34 Score=286.75 Aligned_cols=306 Identities=20% Similarity=0.268 Sum_probs=219.5
Q ss_pred cEEEe-CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 15 QTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 15 ~~V~~-~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
++|.+ .+|+++.||+||||||++|+. |+.++.+.+++++. .++..+. ..+++++|||+|++|+|+|..|+++
T Consensus 262 ~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIVGgG~iGvE~A~~l~~~ 334 (659)
T PTZ00153 262 NTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIVGMGIIGLEFMDIYTAL 334 (659)
T ss_pred CeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEECCCHHHHHHHHHHHhC
Confidence 44544 366789999999999999864 44334333445543 3343332 3478999999999999999999999
Q ss_pred CCcEEEEecCCcccccccCHHHHHHHHHHH-HhCCcEEEcCCeEEEEEecCCCcEEEEEcC-------CC--------CE
Q 018652 94 KLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG--------ST 157 (352)
Q Consensus 94 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l-~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-------~g--------~~ 157 (352)
|.+||++++.+++++ .+++++.+.+.+.+ ++.||++++++.+++++..+++....+.+. ++ ++
T Consensus 335 G~eVTLIe~~~~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~ 413 (659)
T PTZ00153 335 GSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE 413 (659)
T ss_pred CCeEEEEeccCcccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE
Confidence 999999999999998 48999999998875 679999999999999986533332234332 11 36
Q ss_pred EEcCEEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCC------CCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 158 IDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 158 i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
+++|.|++++|++||++. ++..++..++|+|.||++|||+ +|+|||+|||+..+. ....|..
T Consensus 414 i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~----------La~~A~~ 483 (659)
T PTZ00153 414 TYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM----------LAHTASH 483 (659)
T ss_pred EEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc----------CHHHHHH
Confidence 999999999999999987 4677887777889999999997 699999999986431 3456999
Q ss_pred HHHHHHHHHhcCC------------CC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------------------
Q 018652 230 SAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------------------- 276 (352)
Q Consensus 230 ~g~~aa~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~------------------- 276 (352)
||+.++++|.+.. .. .|..+|+......+ +.++|....
T Consensus 484 qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~Pe---------iA~VGlTE~eA~~~g~~~~v~v~~~~~~ 554 (659)
T PTZ00153 484 QALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPE---------LAFIGLTEKEAKELYPPDNVGVEISFYK 554 (659)
T ss_pred HHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCc---------eEEeeCCHHHHHhcCCCcceEEEEEEec
Confidence 9999999998642 11 24445552111111 222232111
Q ss_pred ---cEEEEcC---------------------CCCcEEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh
Q 018652 277 ---ETIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK 328 (352)
Q Consensus 277 ---~~~~~~~---------------------~~~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 328 (352)
.....++ ...-+.++.++ +++|+|+++++.++.+++... .+|+.+.++++ ..
T Consensus 555 ~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~ 634 (659)
T PTZ00153 555 ANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAH 634 (659)
T ss_pred ccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 0000000 01235556553 689999999888888887554 45699999988 33
Q ss_pred -hcCCCchHHHHHHHHhcCC
Q 018652 329 -LQQASSVEEALEIARAALP 347 (352)
Q Consensus 329 -~~~~~~~~e~~~~~~~~~~ 347 (352)
++.||+++|.+..+++++.
T Consensus 635 ~~~~hPT~sE~~~~a~~~~~ 654 (659)
T PTZ00153 635 MVHSHPTISEVLDAAFKAIA 654 (659)
T ss_pred CcCCCCChHHHHHHHHHHHH
Confidence 6799999999999998764
No 33
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.7e-35 Score=282.38 Aligned_cols=307 Identities=19% Similarity=0.232 Sum_probs=219.8
Q ss_pred EECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHH
Q 018652 10 IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 87 (352)
Q Consensus 10 id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 87 (352)
++.....|.+.+|+ ++.||+||||||++|+ .|+++|...... +.. .+ .+. ....+++++|||+|++|+|+|
T Consensus 132 ~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~--~~~-~~--~l~-~~~~~k~vvVIGgG~iG~E~A 204 (479)
T PRK14727 132 KDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPGLMDTPY--WTS-TE--ALF-SDELPASLTVIGSSVVAAEIA 204 (479)
T ss_pred ecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCCCcCccce--ecc-hH--Hhc-cccCCCeEEEECCCHHHHHHH
Confidence 34444456666663 6999999999999986 455565322221 211 11 111 123468999999999999999
Q ss_pred HHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652 88 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167 (352)
Q Consensus 88 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 167 (352)
..|+++|.+|+++++. ++++. +++++.+.+++.|++.||++++++.+++++..++ . ..+.+.++ ++++|.+|+++
T Consensus 205 ~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~ 279 (479)
T PRK14727 205 QAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLIST 279 (479)
T ss_pred HHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEcc
Confidence 9999999999999875 56664 7899999999999999999999999999975432 2 24555555 59999999999
Q ss_pred CCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-
Q 018652 168 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT- 243 (352)
Q Consensus 168 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~- 243 (352)
|..||+.+ ++.++++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..+|+.+|.||++...
T Consensus 280 G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~ 349 (479)
T PRK14727 280 GRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNAT 349 (479)
T ss_pred CCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcc
Confidence 99999885 567788765 5779999999999999999999997643 334589999999999986432
Q ss_pred CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE----------EcCCCCcEEEEEEE--CCEEEEEE
Q 018652 244 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE----------IGNFDPKIATFWID--SGKLKGVL 302 (352)
Q Consensus 244 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~----------~~~~~~~~~~~~~~--~~~v~g~~ 302 (352)
.++...|+......+ +..+|....+ . .. .+....-+.++.++ +++|+|++
T Consensus 350 ~~~~~~p~~~~~~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~ 420 (479)
T PRK14727 350 LDLSAMPAVIFTDPQ---------VATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQ 420 (479)
T ss_pred cccccCCcEEEecCc---------eeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEE
Confidence 223445543211111 3334433210 0 00 00011235666654 58999999
Q ss_pred eecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCC
Q 018652 303 VESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALP 347 (352)
Q Consensus 303 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~ 347 (352)
+++.++.++... ..+|+.+.++++. . .+.|||++|++..+++.+.
T Consensus 421 ~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~ 468 (479)
T PRK14727 421 ILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR 468 (479)
T ss_pred EECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh
Confidence 988888777655 4567899999883 3 6899999999999997654
No 34
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4e-34 Score=276.83 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=223.7
Q ss_pred CceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652 5 DPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG 83 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 83 (352)
.++..+|.....|..+++ ++++||+||||||++|+.+| +++.+.+.+++. . ........+++++|||+|++|
T Consensus 110 g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~v~~~---~---~~~~~~~~~~~vvIIGgG~iG 182 (458)
T PRK06912 110 GKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKWIINS---K---HAMSLPSIPSSLLIVGGGVIG 182 (458)
T ss_pred EEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCeEEcc---h---HHhCccccCCcEEEECCCHHH
Confidence 344556655556665555 46999999999999986543 344323333322 2 222333457899999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcC
Q 018652 84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDAD 161 (352)
Q Consensus 84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D 161 (352)
+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+++++..+ .. ..+.. +| +++++|
T Consensus 183 ~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~-v~~~~-~g~~~~i~~D 258 (458)
T PRK06912 183 CEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQ-ALFEY-EGSIQEVNAE 258 (458)
T ss_pred HHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CE-EEEEE-CCceEEEEeC
Confidence 99999999999999999999998875 788999999999999999999999999997532 22 22332 34 369999
Q ss_pred EEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 162 TIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 162 ~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
.+++++|.+|+++. ++..++..+++++.||+++||+.|+|||+|||+..+. .+..|..+|+.+|.+|.
T Consensus 259 ~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~----------la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 259 FVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGIQ----------LAHVAFHEGTTAALHAS 328 (458)
T ss_pred EEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHc
Confidence 99999999999875 4667777766679999999999999999999996432 44569999999999998
Q ss_pred cCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCcEEEEEEE--CC
Q 018652 240 SAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPKIATFWID--SG 296 (352)
Q Consensus 240 ~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~~~~~~~~--~~ 296 (352)
+... ..+..+|.......+ +..+|.... +.. ..+. ..-+.++.++ ++
T Consensus 329 g~~~~~~~~~~p~~v~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~ 398 (458)
T PRK06912 329 GEDVKVNYHAVPRCIYTSPE---------IASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGE-QTGKVKVIVEPKYQ 398 (458)
T ss_pred CCCCCCCcCCCCeEEecCch---------hEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCC-CceEEEEEEECCCC
Confidence 6432 124556653211111 222333211 000 0111 1235666654 58
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+|+|+++++.++.++... ..+|+.+.++++ .. ++.||+++|++..+++.+..
T Consensus 399 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 453 (458)
T PRK06912 399 EIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVG 453 (458)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhc
Confidence 999999988888877654 456789999887 23 68999999999999876544
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.7e-34 Score=280.09 Aligned_cols=293 Identities=21% Similarity=0.247 Sum_probs=211.9
Q ss_pred eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652 23 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 102 (352)
Q Consensus 23 ~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~ 102 (352)
..++||+||||||++|+. |++||... ...+ .+.+......+++++|||||++|+|+|..|+++|.+||++++
T Consensus 140 ~~~~~d~lVIATGs~p~~-p~ipG~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 140 KIYSAERFLIATGERPRY-PGIPGAKE----LCIT---SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred eEEEeCEEEEecCCCCCC-CCCCCccc----eeec---HHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 369999999999999864 55555321 1112 223333334568999999999999999999999999999987
Q ss_pred CCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEcCEEEEccCCCCCchh--hh
Q 018652 103 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FE 177 (352)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~ 177 (352)
+++++ .+++++++.+++.|+++||++++++.+.+++..++ . ..+++.++ +++++|.|++++|++||+++ ++
T Consensus 212 -~~~l~-~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~ 287 (484)
T TIGR01438 212 -SILLR-GFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-K-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE 287 (484)
T ss_pred -ccccc-ccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-e-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcc
Confidence 46665 58999999999999999999999999999875432 2 24555555 37999999999999999986 56
Q ss_pred hcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCeee
Q 018652 178 RVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFY 253 (352)
Q Consensus 178 ~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~p~~~ 253 (352)
+.+++.+ +|+|.||+++||+.|+|||+|||+..... ....|..+|+.+|+||++... ..+..+|+..
T Consensus 288 ~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i 358 (484)
T TIGR01438 288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV 358 (484)
T ss_pred cccceecCcCCeEecCCCcccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeEE
Confidence 7788765 37799999999999999999999963211 345599999999999986432 2355566643
Q ss_pred eeccCcCCCCcceeeEEeecCccc---------EE-E------------EcCC-CCcEEEEEE-E--CCEEEEEEeecCC
Q 018652 254 SRVFEYEGSPRKVWWQFFGDNVGE---------TI-E------------IGNF-DPKIATFWI-D--SGKLKGVLVESGS 307 (352)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~------------~~~~-~~~~~~~~~-~--~~~v~g~~~~~~~ 307 (352)
...++ +..+|....+ .. . .++. ..-|.++.+ + +++|+|+++++.+
T Consensus 359 ~~~p~---------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~ 429 (484)
T TIGR01438 359 FTPLE---------YGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPN 429 (484)
T ss_pred eCCCc---------eeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCC
Confidence 22222 2233322110 00 0 0000 112455543 2 5899999998878
Q ss_pred HHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhc
Q 018652 308 PEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAA 345 (352)
Q Consensus 308 ~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~ 345 (352)
+.++... ..+|+.+.++++ .. ++.||+++|++..++..
T Consensus 430 a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 430 AGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 8877644 456799999888 22 68999999999998855
No 36
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-35 Score=275.05 Aligned_cols=237 Identities=25% Similarity=0.359 Sum_probs=193.5
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--------CC--
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--------KA-- 71 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--------~~-- 71 (352)
+.+++|++||+++++|+++++..++||+||||+|+.+.+ ..+||. .+..+.+++++|+.+++.++. ..
T Consensus 75 ~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~ 152 (405)
T COG1252 75 FVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD 152 (405)
T ss_pred EEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 456899999999999999997789999999999999875 444553 234567889999987766543 12
Q ss_pred ---CeEEEECCChHHHHHHHHHHhCC-------------CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCe
Q 018652 72 ---KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 135 (352)
Q Consensus 72 ---~~vvVvGgG~~g~e~A~~l~~~g-------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~ 135 (352)
..++|+|||++|+|+|.+|+++- .+|+++++.+++++ .+++.+++..++.|++.||++++++.
T Consensus 153 ~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~ 231 (405)
T COG1252 153 RALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTP 231 (405)
T ss_pred cceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCc
Confidence 26999999999999999987542 38999999999998 59999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCCCCC-CCCCEEEeccccccC
Q 018652 136 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFP 211 (352)
Q Consensus 136 v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 211 (352)
|++++++ .|.+++|+ +|++|.+||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+|||+|||+..+
T Consensus 232 Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~ 304 (405)
T COG1252 232 VTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304 (405)
T ss_pred eEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCC
Confidence 9999864 67888888 4999999999999998 67777 477766 589999999997 899999999999887
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCeee
Q 018652 212 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 253 (352)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~p~~~ 253 (352)
.+ .......+.|.+||..+|+||.... ...+..||.+
T Consensus 305 ~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l-~g~~l~~f~y 341 (405)
T COG1252 305 DP----RPVPPTAQAAHQQGEYAAKNIKARL-KGKPLKPFKY 341 (405)
T ss_pred CC----CCCCChhHHHHHHHHHHHHHHHHHh-cCCCCCCCcc
Confidence 64 1112255679999999999997532 2233445543
No 37
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.4e-33 Score=272.49 Aligned_cols=314 Identities=20% Similarity=0.313 Sum_probs=224.9
Q ss_pred CceEEEEC--CCcEEEeC--CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652 5 DPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 80 (352)
Q Consensus 5 ~~V~~id~--~~~~V~~~--~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG 80 (352)
.++..+++ +.++|.+. ++++++||+||||||++|+.+|.++ .++...+. ++.+......+++++|||+|
T Consensus 120 g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG 192 (475)
T PRK06327 120 GRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAG 192 (475)
T ss_pred EEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCC
Confidence 34444552 35667664 3467999999999999986444322 22222221 12222223457999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC--C--C
Q 018652 81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--S 156 (352)
Q Consensus 81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~ 156 (352)
++|+|+|..|++.|.+||++++.+++++. +++++...+.+.|++.||++++++++++++..++ .+ .+.+.+ | +
T Consensus 193 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~ 269 (475)
T PRK06327 193 VIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQ 269 (475)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCcee
Confidence 99999999999999999999999988874 7899999999999999999999999999985433 22 344433 3 4
Q ss_pred EEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 157 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 157 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
++++|.+++++|.+|++++ ++.++++.+ +|++.||++++|+.|+|||+|||+..+. ....|..+|..
T Consensus 270 ~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~ 339 (475)
T PRK06327 270 TLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVA 339 (475)
T ss_pred EEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHH
Confidence 6999999999999999884 466787765 5779999999999999999999987432 44569999999
Q ss_pred HHHHHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEE
Q 018652 234 CIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFW 292 (352)
Q Consensus 234 aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~ 292 (352)
+|++|.+... ..+..+|+......+ +..+|....+ .. ..+. ..-|.++.
T Consensus 340 aa~~i~g~~~~~~~~~~p~~~~~~pe---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv 409 (475)
T PRK06327 340 VAERIAGQKGHIDYNTIPWVIYTSPE---------IAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKII 409 (475)
T ss_pred HHHHHcCCCCCCCCCCCCeEEeCCcc---------eEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEE
Confidence 9999986432 234555654321111 3333432211 00 0111 12355665
Q ss_pred EE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCc
Q 018652 293 ID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 293 ~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
++ +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|.++.|++.+..
T Consensus 410 ~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 470 (475)
T PRK06327 410 ADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDK 470 (475)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhcc
Confidence 54 68999999988888877654 5567999999883 3 67999999999999876543
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.9e-33 Score=272.84 Aligned_cols=316 Identities=21% Similarity=0.288 Sum_probs=226.5
Q ss_pred ceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652 6 PVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM 84 (352)
Q Consensus 6 ~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 84 (352)
++..+++....+...+| .++.||+||||||++|+.+| .+ ...++. .+.+..+.. .....+++++|||+|++|+
T Consensus 110 ~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~~-~~~~~~~~~---~~~~~~~~vvViGgG~~g~ 183 (461)
T TIGR01350 110 EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDGE-VVITSTGAL---NLKEVPESLVIIGGGVIGI 183 (461)
T ss_pred EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCCc-eEEcchHHh---ccccCCCeEEEECCCHHHH
Confidence 34445555455555554 47999999999999987433 33 112332 222333332 2233578999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCE
Q 018652 85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADT 162 (352)
Q Consensus 85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~ 162 (352)
|+|..|++.|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+.+++..+ +.+ .+.+.+| +++++|.
T Consensus 184 e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~i~~D~ 260 (461)
T TIGR01350 184 EFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKGGETETLTGEK 260 (461)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeCCcEEEEEeCE
Confidence 999999999999999999998887 4889999999999999999999999999997543 333 3555666 4799999
Q ss_pred EEEccCCCCCch--hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 163 IVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 163 vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+|+++|.+|++. ++++.++..+ +|++.||++++|+.|+|||+|||+..+. .+..|..+|+.+|++|.
T Consensus 261 vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~ 330 (461)
T TIGR01350 261 VLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPM----------LAHVASHEGIVAAENIA 330 (461)
T ss_pred EEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHc
Confidence 999999999988 5788888876 5779999999999999999999987432 45669999999999998
Q ss_pred cCCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652 240 SAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SG 296 (352)
Q Consensus 240 ~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~ 296 (352)
+..... +...|+......+ +...|.... +. ... .+...-+.++.++ ++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~---------~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~ 401 (461)
T TIGR01350 331 GKEPAPIDYDAVPSCIYTDPE---------VASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTG 401 (461)
T ss_pred CCCCCCCCCCCCCeEEecCCc---------eEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCC
Confidence 643313 3344543211111 222332211 00 000 0011235555554 58
Q ss_pred EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652 297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE 349 (352)
Q Consensus 297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~ 349 (352)
+|+|+++++.++.++... ..+|+.+.++++ .. +..||+++|.+..+++.+...
T Consensus 402 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~ 457 (461)
T TIGR01350 402 EILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALGK 457 (461)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhccC
Confidence 999999888888777654 456799999988 22 678999999999999876543
No 39
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=264.53 Aligned_cols=319 Identities=22% Similarity=0.355 Sum_probs=254.8
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCC---CCCCcEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALISSLEKAKKVVVVG 78 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g---~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG 78 (352)
+.+.+|+.||.+.+.|++.||.+|.||+++||||.+|+.++.+.. +-...+.+++...|.+++...+...++|.|||
T Consensus 275 l~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiG 354 (659)
T KOG1346|consen 275 LRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIG 354 (659)
T ss_pred EeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEc
Confidence 456789999999999999999999999999999999988765422 22456788999999999988888889999999
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652 79 GGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154 (352)
Q Consensus 79 gG~~g~e~A~~l~~----~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~ 154 (352)
+|++|.|+|+.|.+ .|.+|+-+......+..++++-++++-.+.+++.||.++.|..|.++..... . ..+++.|
T Consensus 355 nGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-n-l~lkL~d 432 (659)
T KOG1346|consen 355 NGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-N-LVLKLSD 432 (659)
T ss_pred CcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-c-eEEEecC
Confidence 99999999999976 4678888888777787888899999999999999999999999999875432 2 3688999
Q ss_pred CCEEEcCEEEEccCCCCCchhhhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652 155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 232 (352)
Q Consensus 155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 232 (352)
|.++..|+|++|+|..||+++++..||+.| -|++.||..|+.. .|||++||++.+.+..+|++ |++||.+|.-.|+
T Consensus 433 G~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrR-RVehhdhavvSGR 510 (659)
T KOG1346|consen 433 GSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRR-RVEHHDHAVVSGR 510 (659)
T ss_pred CCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccce-eccccccceeece
Confidence 999999999999999999999999999986 4899999999874 79999999999999888774 5889999999999
Q ss_pred HHHHHHhcCCCCCCCCCCeeeeeccCcCCCCc----ceeeEEee---cCc-----ccE----------------------
Q 018652 233 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFG---DNV-----GET---------------------- 278 (352)
Q Consensus 233 ~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~G---~~~-----~~~---------------------- 278 (352)
.|+.||.+ ...||.....||++.-..-|... ...+.-+| ... .++
T Consensus 511 LAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~ 589 (659)
T KOG1346|consen 511 LAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSD 589 (659)
T ss_pred eccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccCCCCcccccccccccccc
Confidence 99999985 56788888899997543211100 00000000 000 000
Q ss_pred -------E----EEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCCh
Q 018652 279 -------I----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 326 (352)
Q Consensus 279 -------~----~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (352)
+ ..+.-.++-+.||++|++|||+++ .|-=..+...+.+|..+...++
T Consensus 590 ~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~dd 647 (659)
T KOG1346|consen 590 AGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYDD 647 (659)
T ss_pred CCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchhh
Confidence 0 000001366889999999999997 5655688899999988887766
No 40
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.2e-33 Score=272.24 Aligned_cols=301 Identities=23% Similarity=0.343 Sum_probs=217.8
Q ss_pred cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652 15 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 15 ~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
+.+.+ +++++.||+||||||++ .|.+||.. ..++++ ..+. ......+++++|||+|++|+|+|..|+
T Consensus 120 ~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~~~~---~~~~---~~~~~~~k~v~VIGgG~~g~E~A~~l~ 189 (460)
T PRK06292 120 NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLILGDRLLT---SDDA---FELDKLPKSLAVIGGGVIGLELGQALS 189 (460)
T ss_pred CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcccCCCcEEC---chHH---hCccccCCeEEEECCCHHHHHHHHHHH
Confidence 45555 67789999999999998 23334431 223322 2222 222346799999999999999999999
Q ss_pred hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCC
Q 018652 92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGA 169 (352)
Q Consensus 92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~ 169 (352)
++|.+|+++++.+++++ .+++++...+++.++++ |++++++.+.+++..++..+ .+++.++ +++++|.+++++|.
T Consensus 190 ~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 190 RLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HcCCcEEEEecCCCcCc-chhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCC
Confidence 99999999999998887 48899999999999999 99999999999975432122 2323333 57999999999999
Q ss_pred CCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--
Q 018652 170 KPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-- 244 (352)
Q Consensus 170 ~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-- 244 (352)
+|++++ ++.++++.+ +|+|.||+++||+.|+|||+|||+..+. .+..|..||+.+|.||++....
T Consensus 267 ~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~ 336 (460)
T PRK06292 267 RPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGV 336 (460)
T ss_pred ccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCc
Confidence 999984 577888765 5779999999999999999999997532 3456999999999999863222
Q ss_pred CCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEEE--CCEEEEEE
Q 018652 245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGVL 302 (352)
Q Consensus 245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~v~g~~ 302 (352)
.+..+|+. .|... .+..+|....+ . .. .+. ..-+.++.++ +++|+|++
T Consensus 337 ~~~~~p~~---~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~ 406 (460)
T PRK06292 337 RYHPIPSV---VFTDP------QIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGK-NDGFVKVYADKKTGRLLGAH 406 (460)
T ss_pred CCCCCCeE---EECCC------ccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCC-CCeEEEEEEECCCCEEEEEE
Confidence 23445543 23211 03334443211 0 00 111 1235556554 48999999
Q ss_pred eecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 303 VESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 303 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+..
T Consensus 407 ~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 455 (460)
T PRK06292 407 IIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFS 455 (460)
T ss_pred EECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhh
Confidence 988888777644 556799999988 33 67999999999999887643
No 41
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=6e-34 Score=272.88 Aligned_cols=237 Identities=22% Similarity=0.318 Sum_probs=191.3
Q ss_pred ccCCceEEEECCCcEEEe----------CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--
Q 018652 2 IYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 69 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~----------~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-- 69 (352)
+++++|++||++++.|.+ ++|.+++||+||||||+.|.. +.+||.. +.++.++++.++..+++.+.
T Consensus 79 ~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~ 156 (424)
T PTZ00318 79 YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHARGIRKRIVQC 156 (424)
T ss_pred EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHHHHHHHHHHH
Confidence 456799999999999988 567789999999999999864 5566643 34567788888776654321
Q ss_pred ---------------CCCeEEEECCChHHHHHHHHHHh--------------CCCcEEEEecCCcccccccCHHHHHHHH
Q 018652 70 ---------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLFTPSLAQRYE 120 (352)
Q Consensus 70 ---------------~~~~vvVvGgG~~g~e~A~~l~~--------------~g~~Vtvv~~~~~~~~~~~~~~~~~~l~ 120 (352)
..++++|||+|++|+|+|..|++ .+.+|+++++++++++ .+++.+.+.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~ 235 (424)
T PTZ00318 157 IERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQ 235 (424)
T ss_pred HHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHH
Confidence 12489999999999999999875 3689999999999987 58999999999
Q ss_pred HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCC-CCC
Q 018652 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRM 198 (352)
Q Consensus 121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~ 198 (352)
+.|++.||++++++.++++..+ .+.+++|+++++|.+|+++|.+|+ ++++.++++.+ +|+|.||++|| +++
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~ 308 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPI 308 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCC
Confidence 9999999999999999999743 467889999999999999999998 67888888765 68999999999 599
Q ss_pred CCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCeee
Q 018652 199 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 253 (352)
Q Consensus 199 ~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~p~~~ 253 (352)
|||||+|||+..+.... ...+..|++||..+|+||...........||.+
T Consensus 309 ~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 309 PNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred CCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 99999999998754221 125677999999999999753222113456654
No 42
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.8e-33 Score=271.86 Aligned_cols=301 Identities=19% Similarity=0.232 Sum_probs=213.7
Q ss_pred CCcEEEeCC---CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHH
Q 018652 13 EKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 89 (352)
Q Consensus 13 ~~~~V~~~~---g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~ 89 (352)
+.++|.+.+ +..++||+||||||+.|+.++.++|... ...+ .+.+......+++++|||+|++|+|+|..
T Consensus 128 ~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~ 200 (499)
T PTZ00052 128 DEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGF 200 (499)
T ss_pred cCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHH
Confidence 345665532 3579999999999999864333555321 1112 22333333457899999999999999999
Q ss_pred HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 90 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 90 l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
|+++|.+||++++. .+++ .+++++++.+++.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|.
T Consensus 201 l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 201 LNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGR 276 (499)
T ss_pred HHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCC
Confidence 99999999999874 5665 5899999999999999999999999999997543 22 3567778889999999999999
Q ss_pred CCCchhh--hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--
Q 018652 170 KPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-- 244 (352)
Q Consensus 170 ~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-- 244 (352)
+||++++ ++++++.+ +|++.+++. +|+.|+|||+|||+.... ..+..|.++|+.+|+||++....
T Consensus 277 ~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~ 346 (499)
T PTZ00052 277 KPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFI 346 (499)
T ss_pred CCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcC
Confidence 9999875 57788775 466777766 999999999999986321 15567999999999999864322
Q ss_pred CCCCCCeeeeeccCcCCCCcceeeEEeecCcc---------------------------cEEEEcC---------CCCcE
Q 018652 245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------------------------ETIEIGN---------FDPKI 288 (352)
Q Consensus 245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------------------------~~~~~~~---------~~~~~ 288 (352)
.+..+|+....... +..+|.... .....+. ...-|
T Consensus 347 ~~~~~p~~ift~p~---------ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 417 (499)
T PTZ00052 347 DYTFIPTTIFTPIE---------YGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCL 417 (499)
T ss_pred ccccCCeEEecCCc---------ceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCce
Confidence 34445654322111 222221110 0000000 01235
Q ss_pred EEEEEE---CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652 289 ATFWID---SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIAR 343 (352)
Q Consensus 289 ~~~~~~---~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~ 343 (352)
.++.++ +++|+|+++++.++.++...- .+|+++.++++ .. ++.||+++|++..+.
T Consensus 418 ~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 418 AKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLS 478 (499)
T ss_pred EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence 555443 599999999888898887555 45699999888 33 689999999876543
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=265.33 Aligned_cols=300 Identities=18% Similarity=0.229 Sum_probs=214.9
Q ss_pred CCcEEEeCC---CeEEecCeEEEccCCCCCCCCCCCCC-CCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652 13 EKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 88 (352)
Q Consensus 13 ~~~~V~~~~---g~~~~yd~lViAtG~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~ 88 (352)
++++|.+.+ ...+.||+||||||++|+. |++||. ..+++++ +..+......+++++|||+|++|+|+|.
T Consensus 102 ~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~~~~~~~~~~~~~vvIIGgG~~g~e~A~ 174 (438)
T PRK07251 102 SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------STGIQSLETLPERLGIIGGGNIGLEFAG 174 (438)
T ss_pred cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------hHHHhcchhcCCeEEEECCCHHHHHHHH
Confidence 356665543 2469999999999999864 556664 2344443 2233333346789999999999999999
Q ss_pred HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
.|++.|.+|++++++++++++ .++++...+.+.++++||++++++++++++.+ ++.+ .+. .+++++++|.+|+++|
T Consensus 175 ~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~-~~g~~i~~D~viva~G 250 (438)
T PRK07251 175 LYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVV-TEDETYRFDALLYATG 250 (438)
T ss_pred HHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEE-ECCeEEEcCEEEEeeC
Confidence 999999999999999999875 68899999999999999999999999999853 2322 233 4567899999999999
Q ss_pred CCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--
Q 018652 169 AKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-- 243 (352)
Q Consensus 169 ~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-- 243 (352)
.+|+++. ++..++..+ +|++.||+++||+.|+|||+|||+..+. ....|..+|+.++.++.+...
T Consensus 251 ~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~ 320 (438)
T PRK07251 251 RKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYT 320 (438)
T ss_pred CCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCcc
Confidence 9999875 345666654 5789999999999999999999986432 222378889999998886432
Q ss_pred -CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEEEE--CCEEEE
Q 018652 244 -HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFWID--SGKLKG 300 (352)
Q Consensus 244 -~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~~~--~~~v~g 300 (352)
..+..+|+. ..++.. +...|....+ .. ..++. ..+.++.++ +++|+|
T Consensus 321 ~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~kli~d~~~~~ilG 390 (438)
T PRK07251 321 LEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL-RGAFKVVVNTETKEILG 390 (438)
T ss_pred ccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC-cEEEEEEEECCCCEEEE
Confidence 123345543 112111 2333332110 00 01111 125566553 589999
Q ss_pred EEeecCCHHHhhHH-HHHHhCCCCCCh--hhhcCCCchHHHHHHHH
Q 018652 301 VLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR 343 (352)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~ 343 (352)
+++++.++.++... ..+|+.+.+++. ..++.||+++|.+..+-
T Consensus 391 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 391 ATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 99988888887755 455689998888 23689999999988764
No 44
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.4e-31 Score=250.63 Aligned_cols=222 Identities=25% Similarity=0.320 Sum_probs=180.5
Q ss_pred cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHH----HHHhh---cCCCeEE
Q 018652 3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---EKAKKVV 75 (352)
Q Consensus 3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~---~~~~~vv 75 (352)
+.++|++||+++++|.+++|++++||+||||||+.|. .|.+|| ..++++.+++.+++.. +.... ..+++++
T Consensus 72 ~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 149 (364)
T TIGR03169 72 VIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPPGTKRLA 149 (364)
T ss_pred EEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 4568999999999999999988999999999999986 466666 3566777787777655 33322 2457999
Q ss_pred EECCChHHHHHHHHHHh----CC--CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 76 VVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 76 VvGgG~~g~e~A~~l~~----~g--~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
|+|+|++|+|+|..|.+ +| .+|+++ ..+.+++. +++.+...+++.+++.||++++++.+++++.+ .
T Consensus 150 VvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~ 221 (364)
T TIGR03169 150 VVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------A 221 (364)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------e
Confidence 99999999999999975 34 589999 56667663 78889999999999999999999999999632 4
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCC-CCCCEEEeccccccCCccCCcccccccHHHH
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 227 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A 227 (352)
+.+.+|+++++|.+|+++|.+|+ .++...++..+ +|++.||+++|| +.|+|||+|||+..+..... .....|
T Consensus 222 v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~-----~~~~~A 295 (364)
T TIGR03169 222 LILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRP-----KAGVYA 295 (364)
T ss_pred EEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCC-----CchHHH
Confidence 67788999999999999999998 46666777764 588999999998 99999999999986543221 244569
Q ss_pred HHHHHHHHHHHhc
Q 018652 228 RQSAQHCIKALLS 240 (352)
Q Consensus 228 ~~~g~~aa~~i~~ 240 (352)
..||+.+|+||..
T Consensus 296 ~~~g~~~a~ni~~ 308 (364)
T TIGR03169 296 VRQAPILAANLRA 308 (364)
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999974
No 45
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.8e-31 Score=237.77 Aligned_cols=310 Identities=22% Similarity=0.402 Sum_probs=227.3
Q ss_pred ECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652 11 DIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 88 (352)
Q Consensus 11 d~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~ 88 (352)
+|..-++.-.|| ..+.++++||||||.-. +.||..+++-.... +...+...+-+++++|||+|.+|+|++.
T Consensus 156 ~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gs 228 (506)
T KOG1335|consen 156 DPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGS 228 (506)
T ss_pred CCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhh
Confidence 344444555555 46899999999999632 23454444422221 1122222346899999999999999999
Q ss_pred HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEE
Q 018652 89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTI 163 (352)
Q Consensus 89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~v 163 (352)
-..++|.+||+++..+.+.+. ++++++..+++.|.+.|++|.+++++...+++.++.+ .+++.+ + ++++||.+
T Consensus 229 V~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~Dvl 306 (506)
T KOG1335|consen 229 VWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVL 306 (506)
T ss_pred HHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEE
Confidence 999999999999999999885 9999999999999999999999999999998777643 344432 3 47999999
Q ss_pred EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
++++|++|-+.- +++.|++.| ++++.+|..++|.+|+||++|||...|.. ...|..+|..+.+.|.+
T Consensus 307 LVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 307 LVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAG 376 (506)
T ss_pred EEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcchh----------hhhhhhhchhheeeecc
Confidence 999999998764 567788776 67899999999999999999999987652 23388899888888876
Q ss_pred CC-CCCCCCCCeeeeeccCcCCCCcceeeEEeecCcccE------EEEcCC-------------CCcEEEEEE--ECCEE
Q 018652 241 AQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIGNF-------------DPKIATFWI--DSGKL 298 (352)
Q Consensus 241 ~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~~~-------------~~~~~~~~~--~~~~v 298 (352)
+. ...|.-+|- ..|.++- +.|+|..+.++ +..|.+ ...|.+... ++++|
T Consensus 377 ~~~hv~ynciP~---v~ythPE------vawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdki 447 (506)
T KOG1335|consen 377 GHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKI 447 (506)
T ss_pred cCcccccCCCCc---eeecccc------eeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcE
Confidence 54 345665663 3333321 33355443211 111211 123555444 46999
Q ss_pred EEEEeecCCHHHhhHHHHH-HhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652 299 KGVLVESGSPEEFQLLPTL-ARSQPFVDK-AK-LQQASSVEEALEIARAALPV 348 (352)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~ 348 (352)
+|++++++.+.++.+-..+ +..+...++ +. .+.||+++|++++|..+++.
T Consensus 448 LGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 448 LGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD 500 (506)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhhc
Confidence 9999999999998865544 578888888 33 59999999999999988765
No 46
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=234.72 Aligned_cols=253 Identities=30% Similarity=0.376 Sum_probs=214.9
Q ss_pred ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652 2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 81 (352)
+.+++|+.||++++.|.+.+| ++.||+||+|||++|+..+ +...+++++++...+...+.......++++|+|+|+
T Consensus 71 ~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~ 146 (415)
T COG0446 71 RTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGP 146 (415)
T ss_pred eeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEECCcH
Confidence 467889999999999999999 7999999999999987544 555788999999999988887776679999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE-EEcCCCCEEEc
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDA 160 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~ 160 (352)
+|+|+|..++++|++|++++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...+++.+++
T Consensus 147 ~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 147 IGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred HHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 99999999999999999999999998853328899999999999999999999999998643322211 57788889999
Q ss_pred CEEEEccCCCCCchhhhhcC--CcccCCcEEeCCCCCCC-CCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652 161 DTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237 (352)
Q Consensus 161 D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 237 (352)
|.+++++|.+||..+..+.+ +....|++.||+.++|+ .++|||+|||+..+....+.....++|+.|..+++.++.+
T Consensus 227 d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~ 306 (415)
T COG0446 227 DLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN 306 (415)
T ss_pred eEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence 99999999999977777765 44556789999999997 9999999999998776555556678999999999999999
Q ss_pred HhcCCCCCCCCCCeeeeeccCc
Q 018652 238 LLSAQTHTYDYLPYFYSRVFEY 259 (352)
Q Consensus 238 i~~~~~~~~~~~p~~~~~~~~~ 259 (352)
+.+. ......+++.|.+++++
T Consensus 307 ~~~~-~~~~~~~~~~~~~~~~~ 327 (415)
T COG0446 307 IAGA-LRIPGLLGTVISDVGDL 327 (415)
T ss_pred hccc-cccccccCceEEEEcCe
Confidence 9865 33345678888888865
No 47
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.2e-28 Score=217.33 Aligned_cols=298 Identities=23% Similarity=0.319 Sum_probs=211.6
Q ss_pred EECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHH
Q 018652 10 IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 87 (352)
Q Consensus 10 id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 87 (352)
+++.+-.|...||+ .+++.+++||||.+|. .|.+||..+ - .|++.+.+....++|++|+|+|++++|+|
T Consensus 135 ~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~A 205 (478)
T KOG0405|consen 135 VSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFA 205 (478)
T ss_pred cCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh-----c---cccccccchhhcCceEEEEccceEEEEhh
Confidence 34555577777774 3799999999999986 566666432 1 12344444456899999999999999999
Q ss_pred HHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652 88 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167 (352)
Q Consensus 88 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 167 (352)
..++.+|.+++++.|.+.++. .|++.+++.+.+.++.+||+++.++.++++.+..++... +....|....+|.++|++
T Consensus 206 gi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAi 283 (478)
T KOG0405|consen 206 GIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAI 283 (478)
T ss_pred hHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEe
Confidence 999999999999999999995 699999999999999999999999999999887666543 344555555699999999
Q ss_pred CCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-
Q 018652 168 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT- 243 (352)
Q Consensus 168 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~- 243 (352)
|+.||+.- +++.|++.+ .|.|.||++-+||+|+||++||++.-- ..-+.|...|+.++..+.+...
T Consensus 284 GR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~ 353 (478)
T KOG0405|consen 284 GRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD 353 (478)
T ss_pred cCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC
Confidence 99999864 678888876 577999999999999999999998743 2445699999999999987322
Q ss_pred --CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE------------EcCCCCcEEEEEE--ECCEE
Q 018652 244 --HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE------------IGNFDPKIATFWI--DSGKL 298 (352)
Q Consensus 244 --~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~------------~~~~~~~~~~~~~--~~~~v 298 (352)
..|..+|- .+|..+- +-.+|..+.| +.. .+..+.-+.++.. +++++
T Consensus 354 ~kldY~nVp~---vVFshP~------igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKV 424 (478)
T KOG0405|consen 354 TKLDYENVPC---VVFSHPP------IGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKV 424 (478)
T ss_pred CccccccCce---EEEecCC------cccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcE
Confidence 34666774 3333221 1122222211 111 1111122333333 57999
Q ss_pred EEEEeecCCHHHhhHHHH-HHhCCCCCCh--hhhcCCCchHH
Q 018652 299 KGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEE 337 (352)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~e 337 (352)
+|+++++..+.++..-.. +++.+.+-.+ .-+..||+-.|
T Consensus 425 vG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAE 466 (478)
T KOG0405|consen 425 VGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE 466 (478)
T ss_pred EEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHH
Confidence 999998877777654333 3344443222 22455555443
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.96 E-value=5.5e-27 Score=214.80 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=161.1
Q ss_pred CceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652 5 DPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGG 79 (352)
Q Consensus 5 ~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg 79 (352)
++|++|+++++ .|.++++..+.||+||+|||+.|+. |.+||.. ..++++..... .....+++++|||+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~ 149 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD------GPFFKNKEVAVVGG 149 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC------hhhcCCCEEEEECC
Confidence 78999998765 6677778889999999999999863 5555532 13444332211 12346789999999
Q ss_pred ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcC---CC
Q 018652 80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---DG 155 (352)
Q Consensus 80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g 155 (352)
|.+|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++. ||++++++.+.+++.+ +.+..+.+. ++
T Consensus 150 G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g 220 (300)
T TIGR01292 150 GDSAIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTG 220 (300)
T ss_pred ChHHHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCC
Confidence 99999999999999999999998875431 23455667777 9999999999999853 243344432 23
Q ss_pred --CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652 156 --STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 232 (352)
Q Consensus 156 --~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 232 (352)
+++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++|+||++|||+.... ..+..|+.+|+
T Consensus 221 ~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~ 290 (300)
T TIGR01292 221 EEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGC 290 (300)
T ss_pred ceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHH
Confidence 579999999999999999888776 5544 5789999999999999999999997421 15667999999
Q ss_pred HHHHHHh
Q 018652 233 HCIKALL 239 (352)
Q Consensus 233 ~aa~~i~ 239 (352)
.+|++|.
T Consensus 291 ~aa~~i~ 297 (300)
T TIGR01292 291 IAALSAE 297 (300)
T ss_pred HHHHHHH
Confidence 9999986
No 49
>PRK10262 thioredoxin reductase; Provisional
Probab=99.95 E-value=3.7e-27 Score=218.34 Aligned_cols=214 Identities=20% Similarity=0.282 Sum_probs=158.3
Q ss_pred CceEEEECCCcEEEeC-CCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652 5 DPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGG 80 (352)
Q Consensus 5 ~~V~~id~~~~~V~~~-~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG 80 (352)
.+|++|+..++.+++. +...+.||+||||||+.|+. |++||.+ ..+++++... ......+++++|||+|
T Consensus 83 ~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~------~~~~~~g~~vvVvGgG 155 (321)
T PRK10262 83 DHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATC------DGFFYRNQKVAVIGGG 155 (321)
T ss_pred eEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecC------CHHHcCCCEEEEECCC
Confidence 3567788766654332 23368999999999999864 5566632 3345444322 1223468999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-----
Q 018652 81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----- 155 (352)
Q Consensus 81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g----- 155 (352)
++|+|+|..|++.+.+|+++++.+.+. .++...+.+.+.+++.||++++++.++++..+ ++.+..+++.++
T Consensus 156 ~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~ 231 (321)
T PRK10262 156 NTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDN 231 (321)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCe
Confidence 999999999999999999999987642 34667788888999999999999999999853 333445555432
Q ss_pred -CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC-----CCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 156 -STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
+++++|.|++++|.+||..++.. ++..++|+|.||+ +++|++|+|||+|||+..+.. .+..|+.
T Consensus 232 ~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~---------~~~~A~~ 301 (321)
T PRK10262 232 IESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR---------QAITSAG 301 (321)
T ss_pred EEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcc---------eEEEEeh
Confidence 37999999999999999887654 5666678899997 689999999999999975432 1122666
Q ss_pred HHHHHHHHHh
Q 018652 230 SAQHCIKALL 239 (352)
Q Consensus 230 ~g~~aa~~i~ 239 (352)
+|..||..|.
T Consensus 302 ~g~~Aa~~~~ 311 (321)
T PRK10262 302 TGCMAALDAE 311 (321)
T ss_pred hHHHHHHHHH
Confidence 6666666554
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.95 E-value=4.1e-27 Score=230.72 Aligned_cols=214 Identities=26% Similarity=0.386 Sum_probs=163.1
Q ss_pred ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652 2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVV 76 (352)
Q Consensus 2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvV 76 (352)
+.+++|++|+.+. ..+.+++|+.+.||+||+|||++|+. +.++|.. .++++++...+ .....+++++|
T Consensus 285 ~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~~~~~~k~VvV 357 (515)
T TIGR03140 285 MENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------GPFFKGKDVAV 357 (515)
T ss_pred EcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------hhhcCCCEEEE
Confidence 4577899998765 46777788889999999999999864 5556631 24455443221 12346899999
Q ss_pred ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC-
Q 018652 77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED- 154 (352)
Q Consensus 77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~- 154 (352)
||||++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++ .||++++++.++++..+ ++.+..+.+.+
T Consensus 358 iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~ 429 (515)
T TIGR03140 358 IGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR 429 (515)
T ss_pred ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC
Confidence 99999999999999999999999998775532 2345666766 59999999999999743 34555566543
Q ss_pred --C--CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 155 --G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 155 --g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
| +++++|.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+.. .+..|+.
T Consensus 430 ~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~ 499 (515)
T TIGR03140 430 NSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMG 499 (515)
T ss_pred CCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccc---------eEEEEEc
Confidence 2 469999999999999999998776 6654 57899999999999999999999986542 1123777
Q ss_pred HHHHHHHHHhc
Q 018652 230 SAQHCIKALLS 240 (352)
Q Consensus 230 ~g~~aa~~i~~ 240 (352)
+|..||.++..
T Consensus 500 ~G~~Aa~~i~~ 510 (515)
T TIGR03140 500 EGAKAALSAFD 510 (515)
T ss_pred cHHHHHHHHHH
Confidence 77777777653
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=1.2e-26 Score=223.69 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=154.6
Q ss_pred EecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652 25 LKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGWK 94 (352)
Q Consensus 25 ~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g 94 (352)
..||+||||||+ .|+ .+.+||.+.+++++..++.+...+.. ....+++|+|||+|++|+|+|..+.++|
T Consensus 217 ~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G 295 (449)
T TIGR01316 217 SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLG 295 (449)
T ss_pred hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 579999999998 565 45678888888877655443322211 1235789999999999999999999999
Q ss_pred CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------CC----------
Q 018652 95 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG---------- 155 (352)
Q Consensus 95 ~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~g---------- 155 (352)
.+||++.++++... +. .....+.+++.||++++++.++++..++++++..|++. +|
T Consensus 296 ~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~ 370 (449)
T TIGR01316 296 AEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDA 370 (449)
T ss_pred CEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCc
Confidence 99999998764211 11 12233567889999999999999976555666555442 22
Q ss_pred -CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 156 -STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
+++++|.||+++|..|++.+++..+++.+ +|+|.||++++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 371 ~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~----------~v~~Ai~~G~~ 440 (449)
T TIGR01316 371 ECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA----------TVIRAMGQGKR 440 (449)
T ss_pred eEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----------HHHHHHHHHHH
Confidence 26999999999999999988888888875 5789999999999999999999986432 56679999999
Q ss_pred HHHHHh
Q 018652 234 CIKALL 239 (352)
Q Consensus 234 aa~~i~ 239 (352)
||.+|.
T Consensus 441 AA~~I~ 446 (449)
T TIGR01316 441 AAKSIN 446 (449)
T ss_pred HHHHHH
Confidence 999986
No 52
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.94 E-value=1.4e-26 Score=209.81 Aligned_cols=223 Identities=23% Similarity=0.361 Sum_probs=171.8
Q ss_pred ccCCceEEEECCCcEEEeC----CC----eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc----
Q 018652 2 IYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---- 69 (352)
Q Consensus 2 ~~~~~V~~id~~~~~V~~~----~g----~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---- 69 (352)
+++++.+.||++++.|++. ++ -.+.|||||+|+|+.+.. ..+||- .++.+.++..+|+++++..+.
T Consensus 126 y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dAqeIR~~~~~~le 203 (491)
T KOG2495|consen 126 YLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDAQEIRRKVIDNLE 203 (491)
T ss_pred EEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHHHHHHHHHHHHHH
Confidence 4678899999999988753 44 368999999999999875 444553 344466788888887754321
Q ss_pred -------------CCCeEEEECCChHHHHHHHHHHhC--------------CCcEEEEecCCcccccccCHHHHHHHHHH
Q 018652 70 -------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLFTPSLAQRYEQL 122 (352)
Q Consensus 70 -------------~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~ 122 (352)
.--++||||||++|+|+|.+|... -.+||+++..+++++ +|+..+.++.+++
T Consensus 204 ~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~ 282 (491)
T KOG2495|consen 204 KAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQ 282 (491)
T ss_pred HhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHH
Confidence 112699999999999999998643 367999999999997 6999999999999
Q ss_pred HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcc---cCCcEEeCCCCCC-
Q 018652 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQVDGQFRT- 196 (352)
Q Consensus 123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~---~~g~i~vd~~~~t- 196 (352)
+.+.||++.+++.|+.++.. . ..+...+| +++++-+++|+||..|. ++.+.+.-.. ++.++.||++||.
T Consensus 283 f~~~~I~~~~~t~Vk~V~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~ 357 (491)
T KOG2495|consen 283 FVRDGIDLDTGTMVKKVTEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVK 357 (491)
T ss_pred hhhccceeecccEEEeecCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeecc
Confidence 99999999999999998632 1 23444566 47999999999999886 3333332222 1458999999997
Q ss_pred CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 197 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+.+||||+|||+..+.. .+..+.|.+||.++|+++-
T Consensus 358 G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 358 GVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred CcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 88999999999954432 2255679999999999884
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.94 E-value=1.8e-25 Score=227.47 Aligned_cols=224 Identities=24% Similarity=0.317 Sum_probs=160.4
Q ss_pred EEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEe-cCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC-C
Q 018652 17 LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW-K 94 (352)
Q Consensus 17 V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~-g 94 (352)
+.+++.+...||+||||||+++...+.++|.+ +++++. ..+.+..........+++|+|||||++|+|+|..+.+. |
T Consensus 614 i~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgG 692 (1019)
T PRK09853 614 LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPG 692 (1019)
T ss_pred EEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCC
Confidence 34445555679999999999864444455543 444432 11122212223345689999999999999999998887 4
Q ss_pred -CcEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC--------------CCcEEEEEcCCCCEE
Q 018652 95 -LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--------------DGRVAAVKLEDGSTI 158 (352)
Q Consensus 95 -~~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--------------~~~~~~v~~~~g~~i 158 (352)
.+|+++.++.. .++. . ...+.+.+ +.||+++.++.+.++..+. +++...+...+++++
T Consensus 693 akeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I 766 (1019)
T PRK09853 693 VEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTL 766 (1019)
T ss_pred CceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEE
Confidence 48999998763 3331 2 23344443 4799999998888886311 111122333444689
Q ss_pred EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652 159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237 (352)
Q Consensus 159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 237 (352)
++|.||+|+|.+|+++++++.|++.+ +|++.||++++|+.|+|||+|||+..+. .+..|+.+|+.||++
T Consensus 767 ~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~AA~n 836 (1019)
T PRK09853 767 EADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARRAADA 836 (1019)
T ss_pred EeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHHHHHH
Confidence 99999999999999999998888765 5789999999999999999999986543 455799999999999
Q ss_pred HhcCCCCCCCCCCeeeeecc
Q 018652 238 LLSAQTHTYDYLPYFYSRVF 257 (352)
Q Consensus 238 i~~~~~~~~~~~p~~~~~~~ 257 (352)
|++.....+...|++|+..+
T Consensus 837 I~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 837 ILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HhhhcCCCcccccccccccc
Confidence 99766667777787777644
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.94 E-value=1.1e-25 Score=220.88 Aligned_cols=214 Identities=22% Similarity=0.328 Sum_probs=162.9
Q ss_pred ccCCceEEEECC--CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652 2 IYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVV 76 (352)
Q Consensus 2 ~~~~~V~~id~~--~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvV 76 (352)
+++++|++|+++ ...|.+++|+.+.||+||+|||++|+. +.+||.. ..++++....+ .....+++|+|
T Consensus 284 ~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~~------~~~~~gk~VvV 356 (517)
T PRK15317 284 MNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHCD------GPLFKGKRVAV 356 (517)
T ss_pred EcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeeccC------chhcCCCEEEE
Confidence 457889999886 457777888889999999999999864 4555531 23455442211 12346899999
Q ss_pred ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcC--
Q 018652 77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE-- 153 (352)
Q Consensus 77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~-- 153 (352)
||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+.+ .||++++++.+.++..+ ++.+..+.+.
T Consensus 357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~ 428 (517)
T PRK15317 357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR 428 (517)
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC
Confidence 99999999999999999999999998876532 1345556665 59999999999999853 4555556554
Q ss_pred -CCC--EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 154 -DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 154 -~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
+|+ ++++|.+++++|.+|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+.. .+..|+.
T Consensus 429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k---------~~~~A~~ 498 (517)
T PRK15317 429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYK---------QIIIAMG 498 (517)
T ss_pred CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCC---------EEEEhhh
Confidence 333 59999999999999999998776 6554 57899999999999999999999986543 2233777
Q ss_pred HHHHHHHHHhc
Q 018652 230 SAQHCIKALLS 240 (352)
Q Consensus 230 ~g~~aa~~i~~ 240 (352)
+|..||.++..
T Consensus 499 eG~~Aa~~~~~ 509 (517)
T PRK15317 499 EGAKAALSAFD 509 (517)
T ss_pred hHHHHHHHHHH
Confidence 77777776653
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=1.1e-25 Score=217.65 Aligned_cols=201 Identities=22% Similarity=0.310 Sum_probs=152.5
Q ss_pred EEecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHH--------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652 24 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGMEVAAAAVGWK 94 (352)
Q Consensus 24 ~~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvGgG~~g~e~A~~l~~~g 94 (352)
.+.||+||||||+ .|+. ++++|.+.+++++..++.+...+.. ....+++|+|||||++|+++|..|.++|
T Consensus 226 ~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~G 304 (464)
T PRK12831 226 EEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLG 304 (464)
T ss_pred ccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcC
Confidence 3679999999998 5764 5678888889887655544322211 1246799999999999999999999999
Q ss_pred CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC------------------CCC
Q 018652 95 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------------------DGS 156 (352)
Q Consensus 95 ~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~------------------~g~ 156 (352)
.+||++.+.... .++... ..+ +.+++.||++++++.+.++..++++++..+++. +|+
T Consensus 305 a~Vtlv~r~~~~---~m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~ 379 (464)
T PRK12831 305 AEVHIVYRRSEE---ELPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS 379 (464)
T ss_pred CEEEEEeecCcc---cCCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence 999999886531 112111 122 335778999999999999976556666555431 222
Q ss_pred --EEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHH
Q 018652 157 --TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 231 (352)
Q Consensus 157 --~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 231 (352)
++++|.||+++|..|++.++.+ .+++.+ +|.+.||++ ++||.|+|||+|||+..+. .+..|+.+|
T Consensus 380 ~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~----------~v~~Ai~~G 449 (464)
T PRK12831 380 EFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA----------TVILAMGAG 449 (464)
T ss_pred eEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch----------HHHHHHHHH
Confidence 6999999999999999888776 677765 578999987 9999999999999986432 456699999
Q ss_pred HHHHHHHhc
Q 018652 232 QHCIKALLS 240 (352)
Q Consensus 232 ~~aa~~i~~ 240 (352)
+.||.+|..
T Consensus 450 ~~AA~~I~~ 458 (464)
T PRK12831 450 KKAAKAIDE 458 (464)
T ss_pred HHHHHHHHH
Confidence 999999864
No 56
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.93 E-value=2e-24 Score=213.41 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=155.2
Q ss_pred cCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEE
Q 018652 3 YQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVV 77 (352)
Q Consensus 3 ~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVv 77 (352)
++++|++++.+++ .|.+.++ .+.||+||||||++|+. |+++|.. ..+++++..... ....+++++||
T Consensus 78 ~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~~~g~~VvVI 149 (555)
T TIGR03143 78 LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EFFTGMDVFVI 149 (555)
T ss_pred eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hhcCCCEEEEE
Confidence 4678889987663 5666666 58999999999999875 5566632 345655533221 23468999999
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCC
Q 018652 78 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LED 154 (352)
Q Consensus 78 GgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~ 154 (352)
|||++|+|+|..|++.|.+|+++++.+.+.. .+.. ..+.++..||++++++.++++..+ +.+..+. ..+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~~--~~v~~v~~~~~~~ 221 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATGD--DGLRYAKFVNNVT 221 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEcC--CcEEEEEEEECCC
Confidence 9999999999999999999999999876432 2222 233345569999999999999742 3333332 345
Q ss_pred CCEE----EcCE----EEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652 155 GSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 225 (352)
Q Consensus 155 g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 225 (352)
|+.. ++|. |++++|.+|++.+++. +++.+ +|+|.||++++|+.|+|||+|||+.... ..+.
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~ 291 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVV 291 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---------chhe
Confidence 6532 3676 9999999999998765 46555 5789999999999999999999975321 1345
Q ss_pred HHHHHHHHHHHHHh
Q 018652 226 HARQSAQHCIKALL 239 (352)
Q Consensus 226 ~A~~~g~~aa~~i~ 239 (352)
.|..+|+.||.+|.
T Consensus 292 ~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 292 TAVADGAIAATSAE 305 (555)
T ss_pred eHHhhHHHHHHHHH
Confidence 58889998888874
No 57
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-24 Score=197.78 Aligned_cols=207 Identities=25% Similarity=0.343 Sum_probs=162.5
Q ss_pred CceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCC---CCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652 5 DPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGG 79 (352)
Q Consensus 5 ~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg 79 (352)
.+|.+++... +.|.++++. +.+++||||||..++. |.+|+. .-.+++++.. | .. +..+++|+||||
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---c---dg-~~~~k~v~ViGg 151 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---C---DG-FFKGKDVVVIGG 151 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---c---Cc-cccCCeEEEEcC
Confidence 5678888764 688888887 9999999999999875 444432 1257887743 2 22 457889999999
Q ss_pred ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCC---
Q 018652 80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG--- 155 (352)
Q Consensus 80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--- 155 (352)
|.+++|-|.+|.+.+.+||+++|++.+.+ .+.+.+.++++ +|++++++.+.++..++ +..+++++.
T Consensus 152 G~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~~~ 221 (305)
T COG0492 152 GDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVKGE 221 (305)
T ss_pred CHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecCCc
Confidence 99999999999999999999999986543 23455556655 89999999999998532 456666653
Q ss_pred -CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 018652 156 -STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 234 (352)
Q Consensus 156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~a 234 (352)
+.+++|-+++++|..|++++++..+...++|.|.+|+.++||+|+|||||||+....+ ++..|..+|..|
T Consensus 222 ~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~r---------qi~ta~~~G~~A 292 (305)
T COG0492 222 EKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNGR---------QIATAAGDGAIA 292 (305)
T ss_pred eEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCccc---------EEeehhhhHHHH
Confidence 2689999999999999999999888755578999999999999999999999987653 223366666666
Q ss_pred HHHHh
Q 018652 235 IKALL 239 (352)
Q Consensus 235 a~~i~ 239 (352)
|.++.
T Consensus 293 a~~a~ 297 (305)
T COG0492 293 ALSAE 297 (305)
T ss_pred HHHHH
Confidence 66554
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=4.7e-24 Score=199.89 Aligned_cols=197 Identities=27% Similarity=0.342 Sum_probs=146.3
Q ss_pred EEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHHh-----------hcCCCeEEEECCChHHHHHHHHHH
Q 018652 24 LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS-----------LEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 24 ~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
.+.||+||||||+. |+ .|.+||.+.+++++.. .....+... ...+++++|||+|++|+|+|..|.
T Consensus 116 ~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~ 192 (352)
T PRK12770 116 VKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAV 192 (352)
T ss_pred HhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHH
Confidence 37899999999995 54 5667777677776532 222222110 112689999999999999999999
Q ss_pred hCCCc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc------------------
Q 018652 92 GWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------------------ 152 (352)
Q Consensus 92 ~~g~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~------------------ 152 (352)
+.|.+ |+++++.+.... + ......+.|+++||++++++.+++++.. +.+..+++
T Consensus 193 ~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 265 (352)
T PRK12770 193 LLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVP 265 (352)
T ss_pred HcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCcee
Confidence 99987 999987653211 1 1134456689999999999999998743 33333332
Q ss_pred --CCCCEEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHH
Q 018652 153 --EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 228 (352)
Q Consensus 153 --~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 228 (352)
.+++++++|.+|+++|++|++.+..+ +++..+ +|++.||++++|+.|+|||+|||+..+. .+..|+
T Consensus 266 ~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~ 335 (352)
T PRK12770 266 IPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAI 335 (352)
T ss_pred cCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcc----------hHHHHH
Confidence 22347999999999999999887766 777665 5789999999999999999999987432 456799
Q ss_pred HHHHHHHHHHhc
Q 018652 229 QSAQHCIKALLS 240 (352)
Q Consensus 229 ~~g~~aa~~i~~ 240 (352)
.+|+.+|.+|..
T Consensus 336 ~~g~~aa~~i~~ 347 (352)
T PRK12770 336 KSGLRAAQSIHE 347 (352)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 59
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=190.49 Aligned_cols=294 Identities=22% Similarity=0.302 Sum_probs=199.1
Q ss_pred EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.++++.+|||||.+|++ |.+||.. .+.- .++++......+.+.+|||+|++++|+|..|...|.+||+..|+
T Consensus 159 ~~ta~~fvIatG~RPrY-p~IpG~~----Ey~I---TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPRY-PDIPGAK----EYGI---TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCCC-CCCCCce----eeee---cccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 58999999999999985 6655532 2221 13445555567788999999999999999999999999999886
Q ss_pred CcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCCCchh--h
Q 018652 104 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSP--F 176 (352)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~--~ 176 (352)
- ++ |.|+.++++.+.+.|+++||+|...+.+.+++..+++.. .|.. ..++ +-++|.|+||+|+.+.++- |
T Consensus 231 I-~L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L 307 (503)
T KOG4716|consen 231 I-LL-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL 307 (503)
T ss_pred e-ec-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCC
Confidence 3 33 569999999999999999999999888888887666653 2222 2222 4579999999999998763 5
Q ss_pred hhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCee
Q 018652 177 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYF 252 (352)
Q Consensus 177 ~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~p~~ 252 (352)
...|+..+ .|.|++|+.-+|++|+|||+||+.... .|.-+.|++.|+.+|+.|.++... .|..+|..
T Consensus 308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TT 378 (503)
T KOG4716|consen 308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVATT 378 (503)
T ss_pred CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCcee
Confidence 67777763 578999999999999999999998753 234456999999999999876543 46666653
Q ss_pred eeeccCcC--CCCcceeeEEeecCcc----------cEEEEcC-CCCcEEEE---EEECCEEEEEEeecCCHHHhhHHHH
Q 018652 253 YSRVFEYE--GSPRKVWWQFFGDNVG----------ETIEIGN-FDPKIATF---WIDSGKLKGVLVESGSPEEFQLLPT 316 (352)
Q Consensus 253 ~~~~~~~~--g~~~~~~~~~~G~~~~----------~~~~~~~-~~~~~~~~---~~~~~~v~g~~~~~~~~~~~~~~~~ 316 (352)
...-++|. |....-.++-+|..+- |..+-.. .+.=|.+. -.++.+|+|.+.+++.+.+...-.+
T Consensus 379 VFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfa 458 (503)
T KOG4716|consen 379 VFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFA 458 (503)
T ss_pred eecchhccccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHH
Confidence 33333331 1110000111221110 2221111 11112222 1246899999998889988764433
Q ss_pred -HHhCCCCCChhh--hcCCCchHH
Q 018652 317 -LARSQPFVDKAK--LQQASSVEE 337 (352)
Q Consensus 317 -~~~~~~~~~~~~--~~~~~~~~e 337 (352)
+.+.+.+...-+ +..||+-.|
T Consensus 459 aAlk~glt~~~l~ntigIHPt~aE 482 (503)
T KOG4716|consen 459 AALKCGLTKKDLDNTIGIHPTTAE 482 (503)
T ss_pred HHHHhcccHHHHhhcccccccchh
Confidence 345565554422 455665544
No 60
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.92 E-value=3.3e-24 Score=207.63 Aligned_cols=199 Identities=26% Similarity=0.341 Sum_probs=145.6
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHH---HhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEE
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTII 100 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv 100 (352)
+.||+||||||+.....+.++|.+.+++++..++....... ..+..+++|+|||+|++|+|+|..|.+.|. +|+++
T Consensus 224 ~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv 303 (457)
T PRK11749 224 AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIV 303 (457)
T ss_pred hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence 78999999999963234456777777776643222221110 112368999999999999999999999997 89999
Q ss_pred ecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-------------------CCCCEEEc
Q 018652 101 FPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-------------------EDGSTIDA 160 (352)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-------------------~~g~~i~~ 160 (352)
.+... .++. . ....+.+++.||++++++.+.++..+++ .+..|.+ .+++++++
T Consensus 304 ~~~~~~~~~~--~----~~~~~~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~ 376 (457)
T PRK11749 304 YRRGREEMPA--S----EEEVEHAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA 376 (457)
T ss_pred eecCcccCCC--C----HHHHHHHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC
Confidence 98654 2321 1 1234567889999999999999975432 2222332 12347999
Q ss_pred CEEEEccCCCCCchhhh-hcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652 161 DTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237 (352)
Q Consensus 161 D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 237 (352)
|.||+++|.+|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+. .+..|+.+|+.+|.+
T Consensus 377 D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A~~~G~~aA~~ 446 (457)
T PRK11749 377 DLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWAVGDGKDAAEA 446 (457)
T ss_pred CEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHHHHHHHHHHHH
Confidence 99999999999977764 4566654 57899998 89999999999999995321 556799999999999
Q ss_pred Hhc
Q 018652 238 LLS 240 (352)
Q Consensus 238 i~~ 240 (352)
|..
T Consensus 447 I~~ 449 (457)
T PRK11749 447 IHE 449 (457)
T ss_pred HHH
Confidence 864
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.92 E-value=3.7e-24 Score=218.67 Aligned_cols=208 Identities=24% Similarity=0.355 Sum_probs=155.0
Q ss_pred EEEeCCCeEEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHH--------hhcCCCeEEEECCChHHHHH
Q 018652 16 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGMEV 86 (352)
Q Consensus 16 ~V~~~~g~~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvGgG~~g~e~ 86 (352)
.|++++.....||+||||||+. |+ .+.+||.+.+++++..++.....+.. ....+++|+|||||++|+++
T Consensus 507 ~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 585 (752)
T PRK12778 507 TITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS 585 (752)
T ss_pred cCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence 3444444456799999999994 65 45678888889887655443322211 12357899999999999999
Q ss_pred HHHHHhCCCc-EEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------CC
Q 018652 87 AAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG 155 (352)
Q Consensus 87 A~~l~~~g~~-Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~g 155 (352)
|..+.++|.+ ||++++++. .++ .... .+ +.+++.||++++++.+.++..++++.+..+++. +|
T Consensus 586 A~~~~r~Ga~~Vtlv~r~~~~~~~----~~~~-e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G 659 (752)
T PRK12778 586 ARTAKRLGAERVTIVYRRSEEEMP----ARLE-EV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASG 659 (752)
T ss_pred HHHHHHcCCCeEEEeeecCcccCC----CCHH-HH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCC
Confidence 9999999987 999998753 222 1111 12 346788999999999999976555666555441 22
Q ss_pred -----------CEEEcCEEEEccCCCCCchhhhhc-CCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccc
Q 018652 156 -----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 222 (352)
Q Consensus 156 -----------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~ 222 (352)
+++++|.||+++|.+|+..++... +++.+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 660 ~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~---------- 729 (752)
T PRK12778 660 RRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA---------- 729 (752)
T ss_pred CCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH----------
Confidence 259999999999999998776553 67665 5789999999999999999999986432
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 018652 223 HVDHARQSAQHCIKALLS 240 (352)
Q Consensus 223 ~~~~A~~~g~~aa~~i~~ 240 (352)
.+..|+.+|+.||.+|..
T Consensus 730 ~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 730 TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445699999999999864
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.91 E-value=2.4e-22 Score=207.26 Aligned_cols=209 Identities=21% Similarity=0.290 Sum_probs=152.7
Q ss_pred cEEEeCCCeEEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHHh----------hcCCCeEEEECCChHH
Q 018652 15 QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVVVGGGYIG 83 (352)
Q Consensus 15 ~~V~~~~g~~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----------~~~~~~vvVvGgG~~g 83 (352)
+.+++++.....||+|+||||+. |+ .+.+||.+.+|+++..++.+....... ...+++|+|||||++|
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 45666666667899999999995 65 456789889999876555443222111 1257899999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEc---------
Q 018652 84 MEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKL--------- 152 (352)
Q Consensus 84 ~e~A~~l~~~g~~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~--------- 152 (352)
+++|..+.++|.+|+++.+++. .++ .....+... .+.||+++.+..+++|..+++ +.+..+++
T Consensus 460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d 533 (944)
T PRK12779 460 MDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPD 533 (944)
T ss_pred HHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecccc
Confidence 9999999999999999988753 222 222334343 467999999999999975422 34443322
Q ss_pred C--------CC--CEEEcCEEEEccCCCCCchhhh-hcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCccc
Q 018652 153 E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTA 219 (352)
Q Consensus 153 ~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~ 219 (352)
. +| .++++|.||+|+|+.|+..+.. ..+++.+ +|.|.||+ .++||.|+|||+|||+..+.
T Consensus 534 ~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~------- 606 (944)
T PRK12779 534 KSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS------- 606 (944)
T ss_pred CcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-------
Confidence 1 22 3699999999999999965432 3467655 57899996 68999999999999986432
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 018652 220 RVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 220 ~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.+..|+.+|+.||.+|..
T Consensus 607 ---~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 607 ---TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 445599999999999975
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.90 E-value=9.8e-23 Score=197.84 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=146.9
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHH--HHHH------hhcCCCeEEEECCChHHHHHHHHHHhCCC-
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL- 95 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~- 95 (352)
..||+||+|||+.+...+.++|.+.+|+++..++.... .+.. ....+++|+|||+|++|+|+|..+.++|.
T Consensus 227 ~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~ 306 (471)
T PRK12810 227 AEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK 306 (471)
T ss_pred hhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 47999999999983334557787788887743222111 1111 12357899999999999999999888886
Q ss_pred cEEEEecCCcccccccCH----HH-HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-----CCC---------C
Q 018652 96 DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDG---------S 156 (352)
Q Consensus 96 ~Vtvv~~~~~~~~~~~~~----~~-~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-----~~g---------~ 156 (352)
+|+++++.+.+....... .. .....+.+++.||++++++.+++|.. +++++..|++ .+| +
T Consensus 307 ~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~ 385 (471)
T PRK12810 307 SVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEF 385 (471)
T ss_pred eEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceE
Confidence 788776554332211110 01 11134557788999999999999974 3566655443 222 4
Q ss_pred EEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeC-CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652 157 TIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233 (352)
Q Consensus 157 ~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 233 (352)
++++|.||+++|.+|+. .+++.++++.+ +|.+.+| ++++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 386 ~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~~~Av~~G~~ 455 (471)
T PRK12810 386 VLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LVVWAIAEGRQ 455 (471)
T ss_pred EEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hHHHHHHHHHH
Confidence 79999999999999985 47888888776 5789998 799999999999999997432 45569999999
Q ss_pred HHHHHhc
Q 018652 234 CIKALLS 240 (352)
Q Consensus 234 aa~~i~~ 240 (352)
||.+|..
T Consensus 456 AA~~i~~ 462 (471)
T PRK12810 456 AARAIDA 462 (471)
T ss_pred HHHHHHH
Confidence 9999864
No 64
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.90 E-value=1.3e-22 Score=203.60 Aligned_cols=200 Identities=27% Similarity=0.366 Sum_probs=145.1
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 103 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~ 103 (352)
..||+||||||+.+...+.+||.+.++++...++............+++|+|||+|++|+|+|..+.++|. +|+++.++
T Consensus 277 ~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 277 KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35999999999986444567787778876432221111111124568999999999999999999999986 59999987
Q ss_pred Cc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc-EEEEEcC---------------CCC--EEEcCEEE
Q 018652 104 NH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DGS--TIDADTIV 164 (352)
Q Consensus 104 ~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~-~~~v~~~---------------~g~--~i~~D~vi 164 (352)
.+ .++. .. ..+.+. .+.||++++++.+.++...+++. +..+.+. +|+ .+++|.||
T Consensus 357 ~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI 430 (652)
T PRK12814 357 TREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVI 430 (652)
T ss_pred CcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEE
Confidence 64 3332 22 233343 45799999999999987532221 2222111 222 59999999
Q ss_pred EccCCCCCchhhhhcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 165 IGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 165 ~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
+++|..|++.+++..++..+ +|++.||+ .++|+.|+|||+|||+..+. .+..|+.+|+.||.+|..
T Consensus 431 ~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 431 SAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKRAAHAIDL 498 (652)
T ss_pred ECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHHHHHHHHH
Confidence 99999999999888888876 57899997 68999999999999986542 456799999999998853
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.90 E-value=3.5e-22 Score=193.48 Aligned_cols=200 Identities=24% Similarity=0.303 Sum_probs=148.2
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH--HHHHHh---------hcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~---------~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
..||.||+|||+.+...+.++|.+.+|+++..++... ..+... ...+++++|+|+|++|+++|..+.++
T Consensus 225 ~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~ 304 (467)
T TIGR01318 225 EDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRL 304 (467)
T ss_pred hcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHc
Confidence 4799999999998754456788888998865322211 111110 12468999999999999999999999
Q ss_pred CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------C--------
Q 018652 94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------D-------- 154 (352)
Q Consensus 94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~-------- 154 (352)
|. +||++++++.. ++. ... ..+.+++.||++++++.+.++..++++++..+++. +
T Consensus 305 Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 378 (467)
T TIGR01318 305 GAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPV 378 (467)
T ss_pred CCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceec
Confidence 95 79999987643 331 222 22446788999999999999975545655544431 1
Q ss_pred -C--CEEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeC----CCCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652 155 -G--STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 225 (352)
Q Consensus 155 -g--~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 225 (352)
| +++++|.||+++|++|+. .+++..+++.+ +|++.|| ++++|+.|+|||+|||+..+. .+.
T Consensus 379 ~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~ 448 (467)
T TIGR01318 379 AGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVV 448 (467)
T ss_pred CCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHH
Confidence 2 369999999999999984 56777777765 5789999 678999999999999986532 445
Q ss_pred HHHHHHHHHHHHHhc
Q 018652 226 HARQSAQHCIKALLS 240 (352)
Q Consensus 226 ~A~~~g~~aa~~i~~ 240 (352)
.|+.+|+.+|.+|..
T Consensus 449 ~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 449 TAVAEGRQAAQGILD 463 (467)
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999999999863
No 66
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.89 E-value=6.4e-22 Score=202.54 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=142.0
Q ss_pred CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHH---hhcCCCeEEEECCChHHHHHHHHHHhC-CC-
Q 018652 21 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAAVGW-KL- 95 (352)
Q Consensus 21 ~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~vvVvGgG~~g~e~A~~l~~~-g~- 95 (352)
+.+...||+||||||+++...+.++|.. +++. ...+....+.. ....+++|+|||||++|+++|..+.+. |.
T Consensus 616 ~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~ 692 (1012)
T TIGR03315 616 ELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVE 692 (1012)
T ss_pred hhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCc
Confidence 3345679999999999864444445532 3332 22332333221 234689999999999999999998876 74
Q ss_pred cEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE--------------EcCCCC--EE
Q 018652 96 DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--------------KLEDGS--TI 158 (352)
Q Consensus 96 ~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v--------------~~~~g~--~i 158 (352)
+|+++.++.. .++. .. ..+.+.+ +.||+++.+..+.++. + +.+... ...+|+ ++
T Consensus 693 kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I 763 (1012)
T TIGR03315 693 KVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGTGETVDL 763 (1012)
T ss_pred eEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecCCCeEEE
Confidence 7999998763 3331 22 2344443 5799999988888876 1 221111 112233 68
Q ss_pred EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652 159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236 (352)
Q Consensus 159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 236 (352)
++|.||+|+|.+|++.++++++++.+ +|++.||++ ++|+.|+|||+|||+..+. .+..|+.+|+.||.
T Consensus 764 ~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaqGr~AA~ 833 (1012)
T TIGR03315 764 PADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIADGRKAAN 833 (1012)
T ss_pred EeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHHHHHHHH
Confidence 99999999999999999988888865 578999985 8999999999999986543 45679999999999
Q ss_pred HHhcC
Q 018652 237 ALLSA 241 (352)
Q Consensus 237 ~i~~~ 241 (352)
+|++.
T Consensus 834 nIl~~ 838 (1012)
T TIGR03315 834 AILSR 838 (1012)
T ss_pred HHhcc
Confidence 99854
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=99.89 E-value=1.4e-21 Score=195.52 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=139.5
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh-------cCCCeEEEECCChHHHHHHHHHHhCCC--
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAAAAVGWKL-- 95 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-------~~~~~vvVvGgG~~g~e~A~~l~~~g~-- 95 (352)
..||+||||||+.+.+.+.++|.+.++++.. .+....+...+ ..+++|+|||||++|+|+|..+.+++.
T Consensus 367 ~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~ 444 (604)
T PRK13984 367 EKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKME 444 (604)
T ss_pred hcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccc
Confidence 5799999999997434456778777777653 22233332221 236899999999999999999998753
Q ss_pred ----cEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--------C---------
Q 018652 96 ----DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------D--------- 154 (352)
Q Consensus 96 ----~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--------~--------- 154 (352)
+|+++.... ... .++.... .+.+ +.+.||+++++..+.++.. +++.+..+++. +
T Consensus 445 ~g~~~V~v~~~~r-~~~-~~~~~~~-e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~ 519 (604)
T PRK13984 445 YGEVNVKVTSLER-TFE-EMPADME-EIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDE 519 (604)
T ss_pred cCceEEEEecccc-Ccc-cCCCCHH-HHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecC
Confidence 688864321 111 1222222 2333 3467999999998888864 34555544431 1
Q ss_pred --CCEEEcCEEEEccCCCCCchhhhh---cCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 155 --GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 155 --g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
++++++|.||+++|++|++.++.. .++..++|+|.||++++|++|+|||+|||+..+. ...|+.
T Consensus 520 g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~ 588 (604)
T PRK13984 520 SDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVA 588 (604)
T ss_pred CceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHH
Confidence 236999999999999999887753 2355556889999999999999999999997542 245899
Q ss_pred HHHHHHHHHhc
Q 018652 230 SAQHCIKALLS 240 (352)
Q Consensus 230 ~g~~aa~~i~~ 240 (352)
+|+.||.+|..
T Consensus 589 ~G~~AA~~I~~ 599 (604)
T PRK13984 589 DGYWAAEGIDM 599 (604)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=3e-21 Score=194.46 Aligned_cols=200 Identities=22% Similarity=0.298 Sum_probs=147.0
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHH--HHHHHHHh---------hcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALISS---------LEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~---------~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
..||+|++|||+.....+.+++.+.+|++....+. ....+... ...+++|+|||||++|+++|..+.++
T Consensus 411 ~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ 490 (654)
T PRK12769 411 EDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRH 490 (654)
T ss_pred hcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence 46999999999975434556787788887532111 01111100 12568999999999999999999999
Q ss_pred CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---------CCC-------
Q 018652 94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---------EDG------- 155 (352)
Q Consensus 94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---------~~g------- 155 (352)
|. +|+++.+++.. ++ ..+ ...+.+++.||++++++.++++..++++++..|++ .+|
T Consensus 491 ga~~Vt~i~~~~~~~~~-~~~-----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~ 564 (654)
T PRK12769 491 GASNVTCAYRRDEANMP-GSK-----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPI 564 (654)
T ss_pred CCCeEEEeEecCCCCCC-CCH-----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeC
Confidence 86 69999887543 32 121 22345788999999999999997555566655553 122
Q ss_pred --C--EEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeCC----CCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652 156 --S--TIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 225 (352)
Q Consensus 156 --~--~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 225 (352)
+ ++++|.||+++|+.|+. .+++.++++.+ +|.|.+|+ +++|+.|+|||+||++..+. .+.
T Consensus 565 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv 634 (654)
T PRK12769 565 PGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVV 634 (654)
T ss_pred CCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHH
Confidence 2 59999999999999985 56778888876 57799985 48999999999999987543 455
Q ss_pred HHHHHHHHHHHHHhc
Q 018652 226 HARQSAQHCIKALLS 240 (352)
Q Consensus 226 ~A~~~g~~aa~~i~~ 240 (352)
.|+.+|+.||++|..
T Consensus 635 ~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 635 TAMAEGRHAAQGIID 649 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999999999864
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.88 E-value=2.2e-21 Score=201.86 Aligned_cols=199 Identities=20% Similarity=0.307 Sum_probs=146.2
Q ss_pred EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652 25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGWK 94 (352)
Q Consensus 25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g 94 (352)
..||+||||||+. |+ .+++||.+.+++++..++.....+.. ....+++|+|||||++|+++|..+.++|
T Consensus 516 ~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlG 594 (1006)
T PRK12775 516 KGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLG 594 (1006)
T ss_pred cCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 4699999999995 65 45678888889877654443322211 1236799999999999999999999999
Q ss_pred Cc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------------CC-
Q 018652 95 LD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------------DG- 155 (352)
Q Consensus 95 ~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------------~g- 155 (352)
.+ |+++.+....- ++.. ... .+.+++.||++++++.+.++..++++++..+++. +|
T Consensus 595 a~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~ 669 (1006)
T PRK12775 595 APTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGE 669 (1006)
T ss_pred CCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCc
Confidence 75 78887654221 1111 111 2346788999999999999976556766555431 12
Q ss_pred -CEEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCC-----CCCCCCCCEEEeccccccCCccCCcccccccHHHH
Q 018652 156 -STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 227 (352)
Q Consensus 156 -~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A 227 (352)
.++++|.||+++|..|++.++.. .++..+ +|.|.+|+ .++||.|+|||+|||+..+. .+..|
T Consensus 670 ~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~----------~vv~A 739 (1006)
T PRK12775 670 FKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA----------TVILA 739 (1006)
T ss_pred eEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc----------HHHHH
Confidence 25999999999999999876654 366654 57799986 78999999999999986432 44568
Q ss_pred HHHHHHHHHHHh
Q 018652 228 RQSAQHCIKALL 239 (352)
Q Consensus 228 ~~~g~~aa~~i~ 239 (352)
+.+|+.||.+|.
T Consensus 740 i~~Gr~AA~~I~ 751 (1006)
T PRK12775 740 MGAGRRAARSIA 751 (1006)
T ss_pred HHHHHHHHHHHH
Confidence 899999998875
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.88 E-value=3e-21 Score=187.66 Aligned_cols=205 Identities=21% Similarity=0.314 Sum_probs=143.3
Q ss_pred EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHH-HHHHH---------HhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVAD-ADALI---------SSLEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~-~~~~~---------~~~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
..||+|++|||+. |+ .++++|.+.+|+++...+.. ..... .....+++|+|||+|++|+++|..+.++
T Consensus 227 ~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ 305 (485)
T TIGR01317 227 EQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRH 305 (485)
T ss_pred hhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHc
Confidence 5799999999998 55 45678888889987533221 11110 1113679999999999999998888777
Q ss_pred C-CcEEEEecCCcccccccC----H------HHHHHHHHHHHhCCcEE-EcCCeEEEEEecCCCcEEEEEc--------C
Q 018652 94 K-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL--------E 153 (352)
Q Consensus 94 g-~~Vtvv~~~~~~~~~~~~----~------~~~~~l~~~l~~~gV~~-~~~~~v~~i~~~~~~~~~~v~~--------~ 153 (352)
| .+|+++++.+.++..... + +.....++..+..|+.+ ++++.+.+|..++++.+..+++ +
T Consensus 306 ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 385 (485)
T TIGR01317 306 GAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQ 385 (485)
T ss_pred CCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCC
Confidence 6 579999887655432110 1 12223344444457654 4577788886543455555542 1
Q ss_pred CC-----------CEEEcCEEEEccCCC-CCchhhhhcCCccc-CCcEEe-CCCCCCCCCCEEEeccccccCCccCCccc
Q 018652 154 DG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTA 219 (352)
Q Consensus 154 ~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Iya~GD~a~~~~~~~~~~~ 219 (352)
+| +++++|.||+++|.. |++.+++.++++.+ +|.+.+ |++++|+.|+|||+|||+..+.
T Consensus 386 ~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~------- 458 (485)
T TIGR01317 386 DGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQS------- 458 (485)
T ss_pred CCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcH-------
Confidence 33 269999999999996 88888888888855 577754 5789999999999999986432
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 018652 220 RVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 220 ~~~~~~~A~~~g~~aa~~i~~ 240 (352)
....|+.+|+.||.+|..
T Consensus 459 ---~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 459 ---LIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 345589999999998853
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.86 E-value=2.2e-20 Score=187.40 Aligned_cols=200 Identities=21% Similarity=0.302 Sum_probs=145.1
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGW 93 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~ 93 (352)
..||+|++|||+.+...+.+++.+.+|+++...+... ..+.. ....+++++|+|+|.+++++|..+.++
T Consensus 394 ~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~ 473 (639)
T PRK12809 394 SEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRL 473 (639)
T ss_pred hcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence 5799999999998654456778778887763211110 11110 012578999999999999999999898
Q ss_pred CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---C------CC-------
Q 018652 94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E------DG------- 155 (352)
Q Consensus 94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~------~g------- 155 (352)
|. +||++.++++. ++. ... .+. .+++.||++++++.+++|..++++++..+++ . +|
T Consensus 474 Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 547 (639)
T PRK12809 474 NAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPV 547 (639)
T ss_pred CCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceec
Confidence 85 79999987544 331 222 222 3567899999999999997555566654432 1 12
Q ss_pred ----CEEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeCC----CCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652 156 ----STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 225 (352)
Q Consensus 156 ----~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 225 (352)
.++++|.||+++|+.|+. .++++++++.+ +|.|.+|+ +++|+.|+|||+|||+..+. .+.
T Consensus 548 ~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~----------~vv 617 (639)
T PRK12809 548 AGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD----------LVV 617 (639)
T ss_pred CCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch----------HHH
Confidence 268999999999999974 56777788765 57788885 48999999999999986542 455
Q ss_pred HHHHHHHHHHHHHhc
Q 018652 226 HARQSAQHCIKALLS 240 (352)
Q Consensus 226 ~A~~~g~~aa~~i~~ 240 (352)
.|+.+|+.||++|..
T Consensus 618 ~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 618 TAMAAGRQAARDMLT 632 (639)
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999999999874
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.85 E-value=1.1e-19 Score=189.92 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=140.8
Q ss_pred EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEec
Q 018652 24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFP 102 (352)
Q Consensus 24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~ 102 (352)
.+.||+||||||+.++. ++++|.+.+++++.........- .....+++++|+|+|++|+|+|..|++.|. .|+++++
T Consensus 272 ~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~ 349 (985)
T TIGR01372 272 RIRAKRVVLATGAHERP-LVFANNDRPGVMLAGAARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDA 349 (985)
T ss_pred EEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEchHHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcc
Confidence 58999999999999864 55788889999886544332111 112368999999999999999999999995 4788876
Q ss_pred CCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC----CCCEEEcCEEEEccCCCCCchhhhh
Q 018652 103 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFER 178 (352)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~ 178 (352)
.+.+ ...+.+.+++.||++++++.+.++.. ++.+..|++. ++++++||.|+++.|.+||++++..
T Consensus 350 ~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~ 418 (985)
T TIGR01372 350 RADV---------SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ 418 (985)
T ss_pred Ccch---------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh
Confidence 6433 22456778999999999999999974 3344445543 4568999999999999999999888
Q ss_pred cCCccc--C--CcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 179 VGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 179 ~gl~~~--~--g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
++.... . +... -.|+.|+||++|||+... ....|..+|+.||..++
T Consensus 419 lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 419 RGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred cCCCeeeccccCcee----cCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence 775432 1 1111 137799999999998653 34558888888888775
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.5e-20 Score=164.04 Aligned_cols=185 Identities=25% Similarity=0.367 Sum_probs=147.3
Q ss_pred CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHH
Q 018652 14 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 90 (352)
Q Consensus 14 ~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l 90 (352)
..+|++++|..+..+.+|||||++.+. ..+||++ -+|+-|+. .+..-+.++|+|+|||||++|+|.|..|
T Consensus 301 l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCP------HCDGPLF~gK~VAVIGGGNSGvEAAIDL 373 (520)
T COG3634 301 LIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDL 373 (520)
T ss_pred cEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCC------CCCCcccCCceEEEECCCcchHHHHHhH
Confidence 358999999999999999999999875 4467753 46777754 3444577899999999999999999999
Q ss_pred HhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC--EEEcCEEE
Q 018652 91 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIV 164 (352)
Q Consensus 91 ~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i~~D~vi 164 (352)
+..-..||+++-.+.+.. .+.+++.+++ .++++++|...++|..+ ..++..+...+ |+ .++-+-|+
T Consensus 374 AGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvF 445 (520)
T COG3634 374 AGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVF 445 (520)
T ss_pred Hhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeE
Confidence 998889999976654432 2345555555 47999999999999843 34555555533 33 57888999
Q ss_pred EccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCcc
Q 018652 165 IGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 214 (352)
Q Consensus 165 ~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~ 214 (352)
+-+|..||++||+.. ++.+ +|-|.||.+..||+|+|||+|||+..++.+
T Consensus 446 VqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 446 VQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred EEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence 999999999999987 5544 678999999999999999999999887653
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.82 E-value=5.4e-19 Score=170.03 Aligned_cols=206 Identities=19% Similarity=0.268 Sum_probs=136.9
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHH-------HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC----
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---- 93 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---- 93 (352)
..||+||||||+.+...+.+||.+.+|++...++.. +..+...+..+++++|||+|++|+++|..|.+.
T Consensus 113 ~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l 192 (491)
T PLN02852 113 DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDEL 192 (491)
T ss_pred hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccc
Confidence 479999999999864456678988999987654421 111111234689999999999999999998875
Q ss_pred ----------------CC-cEEEEecCCcccccccCHHH-------------------------------------HHHH
Q 018652 94 ----------------KL-DTTIIFPENHLLQRLFTPSL-------------------------------------AQRY 119 (352)
Q Consensus 94 ----------------g~-~Vtvv~~~~~~~~~~~~~~~-------------------------------------~~~l 119 (352)
+. +|+++.|+...-..+..+++ .+.+
T Consensus 193 ~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l 272 (491)
T PLN02852 193 ASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELL 272 (491)
T ss_pred ccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHH
Confidence 54 59999887532111111111 1112
Q ss_pred HHHHHh---------CCcEEEcCCeEEEEEec--CCCcEEEEEcC-----------------CCC--EEEcCEEEEccCC
Q 018652 120 EQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE-----------------DGS--TIDADTIVIGIGA 169 (352)
Q Consensus 120 ~~~l~~---------~gV~~~~~~~v~~i~~~--~~~~~~~v~~~-----------------~g~--~i~~D~vi~a~G~ 169 (352)
.+...+ ++|.|++....++|..+ +++++..+++. +|+ .++||.||.++|+
T Consensus 273 ~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~ 352 (491)
T PLN02852 273 SKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGY 352 (491)
T ss_pred HHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecC
Confidence 222122 57999999999999742 22566665542 232 5899999999999
Q ss_pred C--CCchh-h-hhcCCcc-cCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 170 K--PTVSP-F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 170 ~--p~~~~-~-~~~gl~~-~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+ |...+ + ...++.. ++|.|.+|+.++|+.|+|||+|||...+... +..++..|+.++.+|+
T Consensus 353 ~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gv---------I~t~~~dA~~ta~~i~ 418 (491)
T PLN02852 353 KSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGI---------IGTNLTCAEETVASIA 418 (491)
T ss_pred CCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCe---------eeecHhhHHHHHHHHH
Confidence 8 55443 2 2234443 3688999988899999999999999865432 2235566666666665
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.82 E-value=6.6e-19 Score=174.80 Aligned_cols=198 Identities=26% Similarity=0.334 Sum_probs=139.4
Q ss_pred ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652 26 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN 104 (352)
Q Consensus 26 ~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~ 104 (352)
.||++++|||+.+.....+++....++...-.+............+++++|+|+|..+++.+..+.+++ .+|+++.+.+
T Consensus 222 ~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 222 EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred hCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 589999999997543344566556665543221111110111235789999999999999999999988 6799988765
Q ss_pred cc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE----EEEEc----CC-------C--CEEEcCEEEEc
Q 018652 105 HL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----ED-------G--STIDADTIVIG 166 (352)
Q Consensus 105 ~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~----~~v~~----~~-------g--~~i~~D~vi~a 166 (352)
.. ++. . ...+.+ ..+.||+++++..+.++...+++.. ..+.. .+ | .++++|.||++
T Consensus 302 ~~~~~~-~----~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A 375 (564)
T PRK12771 302 REDMPA-H----DEEIEE-ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLA 375 (564)
T ss_pred cccCCC-C----HHHHHH-HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEEC
Confidence 32 221 1 122333 4568999999999999975444432 12221 12 2 37999999999
Q ss_pred cCCCCCchhhhh-cCCcccCCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 167 IGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 167 ~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+|..|++.++++ .++..++|++.+|+ .++|+.|+|||+|||+..+. .+..|+.+|+.+|.+|.
T Consensus 376 ~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 376 IGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKAARNID 440 (564)
T ss_pred cCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHHHHHHH
Confidence 999999888875 56764578899998 78899999999999986432 55669999999998884
No 76
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.4e-19 Score=148.81 Aligned_cols=195 Identities=20% Similarity=0.307 Sum_probs=141.6
Q ss_pred CCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHh--hcCCCeEEEECC
Q 018652 4 QDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKVVVVGG 79 (352)
Q Consensus 4 ~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~vvVvGg 79 (352)
..+|.++|...+ .+.++. +.+.+|.+|+|||+..+++. .||. -++.++-+.+..|.-+... +..+|..+||||
T Consensus 89 tEtVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG 165 (322)
T KOG0404|consen 89 TETVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG 165 (322)
T ss_pred eeehhhccccCCCeEEEecC-CceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence 345677776554 566644 46899999999999987643 3443 1222444455555444433 357899999999
Q ss_pred ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH-HHHHhCCcEEEcCCeEEEEEecCCCc-----EEEEEcC
Q 018652 80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGR-----VAAVKLE 153 (352)
Q Consensus 80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~-~~l~~~gV~~~~~~~v~~i~~~~~~~-----~~~v~~~ 153 (352)
|.++||-|.+|.+.+.+|++++|++++.. +..++ +..+.-+|+++.|+.+.+...+ ... +..+.+.
T Consensus 166 GDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tg 237 (322)
T KOG0404|consen 166 GDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTG 237 (322)
T ss_pred cHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEecccC
Confidence 99999999999999999999999986643 23333 4455568999999988776533 222 2233333
Q ss_pred CCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCC-CCCCCCCCEEEecccccc
Q 018652 154 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAF 210 (352)
Q Consensus 154 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~ 210 (352)
+-+.++.+-++.++|..|++.+++. .++.| +|.|++-+ .-.||+|++||+||+...
T Consensus 238 e~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 238 EETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred cccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence 3457999999999999999999987 56655 67788764 677899999999999865
No 77
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=143.05 Aligned_cols=198 Identities=27% Similarity=0.348 Sum_probs=144.7
Q ss_pred eEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHH
Q 018652 7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV 86 (352)
Q Consensus 7 V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 86 (352)
|..+|..++.+.+.+|.++.|++|++|||++|...- .+ --+-+..+|+.+..+.++..+.+.|.|.|+|.|-+++|+
T Consensus 73 v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El 149 (334)
T KOG2755|consen 73 VVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMEL 149 (334)
T ss_pred hhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHH
Confidence 778899999999999999999999999999986432 22 235677788888888888889999999999999999999
Q ss_pred HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCC------------cEEEcCCe-------------------
Q 018652 87 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------VKFVKGAS------------------- 135 (352)
Q Consensus 87 A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~g------------V~~~~~~~------------------- 135 (352)
+..+.. .+|++....+.+...+++|.+.+.+...++..+ ++...++.
T Consensus 150 ~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~ 227 (334)
T KOG2755|consen 150 TYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQ 227 (334)
T ss_pred HHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccc
Confidence 999864 679998888888888888888877776651111 11111110
Q ss_pred ----------------EEEEE-ecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcc-cCCcEEeCCCCC
Q 018652 136 ----------------IKNLE-AGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFR 195 (352)
Q Consensus 136 ----------------v~~i~-~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~-~~g~i~vd~~~~ 195 (352)
+..+. +.+...+.......| .++.||.+++++|..||.+++-...+.. ++|++.||+.|+
T Consensus 228 g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~ 307 (334)
T KOG2755|consen 228 GISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAME 307 (334)
T ss_pred cchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhcc
Confidence 00000 000000111111111 3688999999999999998765444443 468999999999
Q ss_pred CCCCCEEEeccccc
Q 018652 196 TRMPGIFAIGDVAA 209 (352)
Q Consensus 196 t~~~~Iya~GD~a~ 209 (352)
|+.|++||+||++.
T Consensus 308 tslpdvFa~gDvct 321 (334)
T KOG2755|consen 308 TSLPDVFAAGDVCT 321 (334)
T ss_pred ccccceeeecceec
Confidence 99999999999987
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.69 E-value=8.4e-16 Score=148.20 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=135.8
Q ss_pred CccCCceEEEECCCc--EEEeCCC--e--EEecCeEEEccC--CCCCCCCCCCCC-CCCcE-EEecCHHHHHHHHHhhcC
Q 018652 1 MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGSLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEK 70 (352)
Q Consensus 1 ~~~~~~V~~id~~~~--~V~~~~g--~--~~~yd~lViAtG--~~~~~~~~~~g~-~~~~v-~~~~~~~~~~~~~~~~~~ 70 (352)
++++++|++|++.+. .|++.++ . +..||+||+||| +.|+ .|.++|. ..+|. .+..++.+.. ...
T Consensus 130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~ 203 (461)
T PLN02172 130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFK 203 (461)
T ss_pred EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccC
Confidence 357899999998654 5665432 2 467999999999 5665 4666664 23442 1111111111 237
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 150 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v 150 (352)
+|+|+|||+|.+|+++|..|++.+.+|+++.++..+.. . ..+.....++..+..|..+.. ++ .|
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V 267 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SI 267 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc----------c-ccCcCCCCceEECCcccceec--CC---eE
Confidence 89999999999999999999999999999998753211 0 011112234455666666642 22 47
Q ss_pred EcCCCCEEEcCEEEEccCCCCCchhhhhcC-CcccCCcEE-eCCC-CCCC-CCCEEEeccccccCCccCCcccccccHHH
Q 018652 151 KLEDGSTIDADTIVIGIGAKPTVSPFERVG-LNSSVGGIQ-VDGQ-FRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDH 226 (352)
Q Consensus 151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g-l~~~~g~i~-vd~~-~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~ 226 (352)
.+.||+.+++|.||+|||++|+.+++...+ +..+++.+. .-++ +-.. .|+++.+|=..... .+..
T Consensus 268 ~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~-----------~f~~ 336 (461)
T PLN02172 268 VFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGI-----------QFVM 336 (461)
T ss_pred EECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecccccc-----------Cchh
Confidence 899999999999999999999999987532 222222211 1111 1122 48999999542211 3344
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 018652 227 ARQSAQHCIKALLSAQTH 244 (352)
Q Consensus 227 A~~~g~~aa~~i~~~~~~ 244 (352)
...||+.+|+.+.|....
T Consensus 337 ~E~Qa~~~a~v~sG~~~L 354 (461)
T PLN02172 337 FEIQSKWVAAVLSGRVTL 354 (461)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 778999999988765443
No 79
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.65 E-value=2e-15 Score=132.74 Aligned_cols=225 Identities=18% Similarity=0.266 Sum_probs=154.7
Q ss_pred cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCC----CCCCcEEEecCHHHHHHHHHhh---cCCCeEE
Q 018652 3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALISSL---EKAKKVV 75 (352)
Q Consensus 3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~~~---~~~~~vv 75 (352)
++.+|++++|++++|.+.+|++|+||+||||+|..-+ ...++| .+.|++.+..+....+...+.+ +.+.-+.
T Consensus 110 i~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIf 188 (446)
T KOG3851|consen 110 IKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIF 188 (446)
T ss_pred HHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEE
Confidence 4578999999999999999999999999999999854 455555 3467887777766665554443 3333322
Q ss_pred --------EECCChHHHHHHH-HHHhCCC--cEEEEecCCcccccccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652 76 --------VVGGGYIGMEVAA-AAVGWKL--DTTIIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 143 (352)
Q Consensus 76 --------VvGgG~~g~e~A~-~l~~~g~--~Vtvv~~~~~~~~~~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~ 143 (352)
.-|+-.-.|-++. +++++|. ++.++.--. ++..|+ +..++.+++..++++|++.....+.++..++
T Consensus 189 TfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~ 266 (446)
T KOG3851|consen 189 TFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTND 266 (446)
T ss_pred ecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccc
Confidence 2344444555544 4666664 345543321 223343 4678889999999999999998899987543
Q ss_pred CCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC-CCCC-CCCCEEEeccccccCCccCCccc
Q 018652 144 DGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAAFPLKMYDRTA 219 (352)
Q Consensus 144 ~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Iya~GD~a~~~~~~~~~~~ 219 (352)
...+....-+-| ++++++++-+....++. +.+..+.+.+..|++.||. .+|. ..||||++|||...|..+
T Consensus 267 ~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK----- 340 (446)
T KOG3851|consen 267 RKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK----- 340 (446)
T ss_pred hhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchh-----
Confidence 222211111224 37899999999998886 6777888877789999996 7775 899999999999988753
Q ss_pred ccccHHHHHHHHHHHHHHHh
Q 018652 220 RVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 220 ~~~~~~~A~~~g~~aa~~i~ 239 (352)
.......|...+-+|+.
T Consensus 341 ---TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 341 ---TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ---hHHHHHhcCchhhhhHH
Confidence 22223345555566664
No 80
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=9e-15 Score=125.96 Aligned_cols=139 Identities=26% Similarity=0.418 Sum_probs=99.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--cccCH-----------HHH--H--HHHHHHHhCCcEEEcCCe
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS 135 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--~~~~~-----------~~~--~--~l~~~l~~~gV~~~~~~~ 135 (352)
+|+|||||+.|+.+|..|++.+.+++++++.+.... ..+.. ... . .+.+.+...+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653110 00000 001 1 333445778999999999
Q ss_pred EEEEEecCCC------cEEEEEcCCCCEEEcCEEEEccCCCCCchh----------------------------------
Q 018652 136 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSP---------------------------------- 175 (352)
Q Consensus 136 v~~i~~~~~~------~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~---------------------------------- 175 (352)
+.+++..... .+......++.++++|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 160 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT 160 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence 9999864331 112234556678999999999998855221
Q ss_pred --h-hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccC
Q 018652 176 --F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 211 (352)
Q Consensus 176 --~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~ 211 (352)
+ +..+++.+ +|++.||+++||+.|+|||+|||+..+
T Consensus 161 ~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 161 EFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred cccccccccccccccccccccccccccccccccccccccC
Confidence 0 33455654 688999999999999999999999864
No 81
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.57 E-value=3.4e-14 Score=103.67 Aligned_cols=80 Identities=39% Similarity=0.653 Sum_probs=74.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~ 152 (352)
+++|||||++|+|+|..|++.|.+||++++++.++ +.++++....+.+.+++.||++++++.++++++++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 68999999999999999999999999999999999 4699999999999999999999999999999987666 65 888
Q ss_pred CCC
Q 018652 153 EDG 155 (352)
Q Consensus 153 ~~g 155 (352)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 876
No 82
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.51 E-value=2.9e-13 Score=132.46 Aligned_cols=220 Identities=22% Similarity=0.284 Sum_probs=114.0
Q ss_pred CccCCceEEEECCC-------cEEEeCC-Ce--EEecCeEEEccCCCCC-CCCC--CCCC-CCCc-EEEecCHHHHHHHH
Q 018652 1 MIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS-RFPE--KIGG-YLPG-VHYIRDVADADALI 65 (352)
Q Consensus 1 ~~~~~~V~~id~~~-------~~V~~~~-g~--~~~yd~lViAtG~~~~-~~~~--~~g~-~~~~-v~~~~~~~~~~~~~ 65 (352)
+.++++|++|++.. ..|++++ |+ +-.||+||+|||.... ..|. +||. ..+| +.+.+++.+.
T Consensus 103 I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~---- 178 (531)
T PF00743_consen 103 IRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDP---- 178 (531)
T ss_dssp EETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TG----
T ss_pred EEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcCh----
Confidence 46899999997532 4676654 43 3579999999997521 1232 3342 1233 2232222221
Q ss_pred HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-cccccc----------------------CHHHHHHHH-H
Q 018652 66 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF----------------------TPSLAQRYE-Q 121 (352)
Q Consensus 66 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~~~~~----------------------~~~~~~~l~-~ 121 (352)
...++|+|+|||+|.+|+++|..|++...+|++..|+.. ++++.. +..+.+.+. +
T Consensus 179 -~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~ 257 (531)
T PF00743_consen 179 -EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEK 257 (531)
T ss_dssp -GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------------------------------
T ss_pred -hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccccccccccc
Confidence 234799999999999999999999999999998887732 222211 111111111 0
Q ss_pred --------------------------------HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEE-EcCEEEEccC
Q 018652 122 --------------------------------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIG 168 (352)
Q Consensus 122 --------------------------------~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i-~~D~vi~a~G 168 (352)
.+....|++. ..|.+++. ..|.++||+.+ ++|.||+|||
T Consensus 258 ~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~------~~v~F~DGs~~e~vD~II~~TG 329 (531)
T PF00743_consen 258 KLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTG 329 (531)
T ss_dssp -----------------------------------------E--E-EEEE-S------SEEEETTSEEEEE-SEEEE---
T ss_pred cccccccccccccccccccccccccccccccccccccccccc--cccccccc------cccccccccccccccccccccc
Confidence 0111112222 11334432 15778999875 6999999999
Q ss_pred CCCCchhhhhcCCcccCCcEEeCCCCC---CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 018652 169 AKPTVSPFERVGLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 243 (352)
Q Consensus 169 ~~p~~~~~~~~gl~~~~g~i~vd~~~~---t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 243 (352)
++...+++.+.-+...++.+..-.++- -..|++..+|=+... .. .+..+..||+.+|+.+.|...
T Consensus 330 Y~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-g~---------~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 330 YKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-GS---------IFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-S----------HHHHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cc---------ccccccccccccccccccccc
Confidence 999988887765544333332223221 245889999865321 11 344578899999998876443
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=129.07 Aligned_cols=204 Identities=27% Similarity=0.313 Sum_probs=138.7
Q ss_pred ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh---------cCCCeEEEECCChHHHHHHHHHHhCCC-
Q 018652 26 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGMEVAAAAVGWKL- 95 (352)
Q Consensus 26 ~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---------~~~~~vvVvGgG~~g~e~A~~l~~~g~- 95 (352)
.||++++|||+.-.+...++|.+.++++..-++.......... ..+++++|||+|.++++++....++|.
T Consensus 208 e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~ 287 (457)
T COG0493 208 EYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAK 287 (457)
T ss_pred hhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCe
Confidence 6799999999864444567787788876543322221111111 133899999999999999999999997
Q ss_pred cEEEEecCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-------------------CC
Q 018652 96 DTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------------------DG 155 (352)
Q Consensus 96 ~Vtvv~~~~~~~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-------------------~g 155 (352)
+|+.+.+...-.... .+..-.....+...++|+...+.....++..+++|++..+.+. .|
T Consensus 288 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~g 367 (457)
T COG0493 288 SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIG 367 (457)
T ss_pred EEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccC
Confidence 677775322110100 1112233455666788899999888889887777877655331 12
Q ss_pred C--EEEcCEEEEccCCCCCchhh--hhcCCccc-CCcEEeCCCC-CCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652 156 S--TIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229 (352)
Q Consensus 156 ~--~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~ 229 (352)
+ .+++|.|+.++|+.++.... ...++..+ .|.+.+++.+ +|+.|++||.||+..... .+-.|+.
T Consensus 368 s~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~----------~vv~ai~ 437 (457)
T COG0493 368 TEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA----------LVVWAIA 437 (457)
T ss_pred ceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh----------hhhhHHh
Confidence 2 57899999999998874331 22244444 6889999988 999999999999998532 3334888
Q ss_pred HHHHHHHHHh
Q 018652 230 SAQHCIKALL 239 (352)
Q Consensus 230 ~g~~aa~~i~ 239 (352)
+|+.+|+.|.
T Consensus 438 eGr~aak~i~ 447 (457)
T COG0493 438 EGREAAKAID 447 (457)
T ss_pred hchHHHHhhh
Confidence 8888887764
No 84
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.37 E-value=2.2e-12 Score=119.79 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=94.8
Q ss_pred ccCCceEEEECCC------cEEEeC----CCeEEecCeEEEccCCCCCCCCCCCCC-C-CCcEEEecCHHHHHHHHHhhc
Q 018652 2 IYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTASRFPEKIGG-Y-LPGVHYIRDVADADALISSLE 69 (352)
Q Consensus 2 ~~~~~V~~id~~~------~~V~~~----~g~~~~yd~lViAtG~~~~~~~~~~g~-~-~~~v~~~~~~~~~~~~~~~~~ 69 (352)
.++++|++|++.. ..|.+. +++.+.++.||||||..|. +|..... . .+.+++..++.... ....
T Consensus 113 ~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~---~~~~ 188 (341)
T PF13434_consen 113 RYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRI---DQSL 188 (341)
T ss_dssp EESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHH---T---
T ss_pred EECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhcc---cccc
Confidence 5788999998655 367763 4568999999999999886 4543221 1 25677654433221 1245
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcccc--------cccCHHH------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ--------RLFTPSL------------------------ 115 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~--------~~~~~~~------------------------ 115 (352)
..++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+ ..+.|+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 78999999999999999999998875 7999999854422 1233332
Q ss_pred -------HHHHHHH------HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEEEEccCCC
Q 018652 116 -------AQRYEQL------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAK 170 (352)
Q Consensus 116 -------~~~l~~~------l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~ 170 (352)
.+.+.+. ..+..++++.+++|++++..+++.+ .+.+.+ + .++++|.||+|||++
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 2222111 1233578999999999987764433 344433 2 368999999999975
No 85
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.36 E-value=9.5e-11 Score=107.17 Aligned_cols=206 Identities=18% Similarity=0.271 Sum_probs=130.4
Q ss_pred CccCCceE---EEECCCc---EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeE
Q 018652 1 MIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 74 (352)
Q Consensus 1 ~~~~~~V~---~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v 74 (352)
++++++|+ ++|.+.. .+.+.++.++.+..|||++|.+|.-+|......-+.+++..++ ..-+..+...++|
T Consensus 114 ~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~---~~~~~~~~~~~~V 190 (436)
T COG3486 114 LRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEY---LERHPELLQKRSV 190 (436)
T ss_pred cccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCccceeehHHH---HHhhHHhhcCceE
Confidence 36789999 5554443 3667788899999999999999864332222212345553221 1112223345559
Q ss_pred EEECCChHHHHHHHHHHhC----CCcEEEEecCCccccc--------ccCHHHHHHH-----------------------
Q 018652 75 VVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR--------LFTPSLAQRY----------------------- 119 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~~~--------~~~~~~~~~l----------------------- 119 (352)
.|||+|.+|.|+-..|... ..++.++.|+..+++. .+.|+..+++
T Consensus 191 ~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~ 270 (436)
T COG3486 191 TVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGIS 270 (436)
T ss_pred EEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccC
Confidence 9999999999999988653 3468889998655431 1222222211
Q ss_pred -------HHHH-------HhCCcEEEcCCeEEEEEecCCCcEEEEEc-----CCCCEEEcCEEEEccCCCCCch-hhhhc
Q 018652 120 -------EQLY-------QQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDGSTIDADTIVIGIGAKPTVS-PFERV 179 (352)
Q Consensus 120 -------~~~l-------~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-~~~~~ 179 (352)
-+.| .+.++.+..++.+..++...+|. ..+.+ ...++++.|.||+|||++...+ +++.+
T Consensus 271 ~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l 349 (436)
T COG3486 271 FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGL 349 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhH
Confidence 1111 23568899999999998766664 23333 2234789999999999985444 66554
Q ss_pred C--Cc-ccCCcEEeCCCCCCC----C-CCEEEecccccc
Q 018652 180 G--LN-SSVGGIQVDGQFRTR----M-PGIFAIGDVAAF 210 (352)
Q Consensus 180 g--l~-~~~g~i~vd~~~~t~----~-~~Iya~GD~a~~ 210 (352)
. |. +++|...|+..++.. . -.||+.|-+...
T Consensus 350 ~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 350 ADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred HHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 3 23 346789998866542 1 259999876543
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.33 E-value=2e-11 Score=124.16 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=97.9
Q ss_pred EEecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHHh--------hcCCCeEEEECCChHHHHHHHHHHh--
Q 018652 24 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG-- 92 (352)
Q Consensus 24 ~~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--------~~~~~~vvVvGgG~~g~e~A~~l~~-- 92 (352)
...||+|+||||+ .|+. +.+||.+.++++...++......... +..+++|+|||||++|+++|.....
T Consensus 495 ~~gyDAV~IATGA~kpr~-L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~ 573 (1028)
T PRK06567 495 DLGFDHIAFCIGAGQPKV-LDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYY 573 (1028)
T ss_pred hcCCCEEEEeCCCCCCCC-CCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhc
Confidence 3679999999999 5764 56788878888765332211111100 1236799999999999999984332
Q ss_pred -------------------------------------------------CCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 018652 93 -------------------------------------------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123 (352)
Q Consensus 93 -------------------------------------------------~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l 123 (352)
.| .|+++.|+..--.... +...+.+++.
T Consensus 574 ~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~-~~~~eEv~~A- 650 (1028)
T PRK06567 574 KKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAY-KLNHEELIYA- 650 (1028)
T ss_pred cchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCC-CCCHHHHHHH-
Confidence 22 2888877652211111 0012334443
Q ss_pred HhCCcEEEcCCeEEEEEecCCCcEEEEEcC--------------C-C---------------CEEEcCEEEEccCCCCCc
Q 018652 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------D-G---------------STIDADTIVIGIGAKPTV 173 (352)
Q Consensus 124 ~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~ 173 (352)
.+.||++..+....+|..++++++..+++. + + .+++||.||+|+|..||+
T Consensus 651 ~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~ 730 (1028)
T PRK06567 651 LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNT 730 (1028)
T ss_pred HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcc
Confidence 567999999999999976656766655442 1 1 368999999999999998
Q ss_pred hhh
Q 018652 174 SPF 176 (352)
Q Consensus 174 ~~~ 176 (352)
.+.
T Consensus 731 ~~~ 733 (1028)
T PRK06567 731 QFD 733 (1028)
T ss_pred ccc
Confidence 763
No 87
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.26 E-value=2.2e-11 Score=121.97 Aligned_cols=203 Identities=22% Similarity=0.347 Sum_probs=116.3
Q ss_pred EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHH--HHHHHh-------hcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652 25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA--DALISS-------LEKAKKVVVVGGGYIGMEVAAAAVGWK 94 (352)
Q Consensus 25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~-------~~~~~~vvVvGgG~~g~e~A~~l~~~g 94 (352)
-.+|.+|+|+|+. |+.+ ++||.+++|++..-.+... ..+.+. ..++|+|+|||||.+|-++...-.++|
T Consensus 1869 ~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg 1947 (2142)
T KOG0399|consen 1869 KENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHG 1947 (2142)
T ss_pred hccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhc
Confidence 4689999999996 5444 5688889998653222211 111110 136799999999999999998888888
Q ss_pred CcEEE-Ee--cCC-------cccc---cccCHHHHHHHHHHHHhCCcEEE---------------cCCeEE--EEEecCC
Q 018652 95 LDTTI-IF--PEN-------HLLQ---RLFTPSLAQRYEQLYQQNGVKFV---------------KGASIK--NLEAGSD 144 (352)
Q Consensus 95 ~~Vtv-v~--~~~-------~~~~---~~~~~~~~~~l~~~l~~~gV~~~---------------~~~~v~--~i~~~~~ 144 (352)
++-.. ++ +.+ .++| +.|--++...-.+.+-...-+-+ ++-+.. ++++++.
T Consensus 1948 ~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~ 2027 (2142)
T KOG0399|consen 1948 CKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDK 2027 (2142)
T ss_pred cceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCC
Confidence 65332 22 111 1121 11111111111111111111100 111111 2223333
Q ss_pred CcEEEEEcCCC-CEEEcCEEEEccCCC-CCchhhhhcCCccc-CCcEEeC-CCCCCCCCCEEEeccccccCCccCCcccc
Q 018652 145 GRVAAVKLEDG-STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTAR 220 (352)
Q Consensus 145 ~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~ 220 (352)
|+..-++..+. +.++||++|++.|+. |.....++++++.+ ++.|.+- +.+.|++++|||+|||.......
T Consensus 2028 g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslv------ 2101 (2142)
T KOG0399|consen 2028 GRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLV------ 2101 (2142)
T ss_pred CceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEE------
Confidence 33322333332 468999999999986 55456778888876 5556653 56889999999999998765432
Q ss_pred cccHHHHHHHHHHHHHHH
Q 018652 221 VEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 221 ~~~~~~A~~~g~~aa~~i 238 (352)
+ | |++.|+.+|+.+
T Consensus 2102 v--w--ai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2102 V--W--AIQEGRQAARQV 2115 (2142)
T ss_pred E--E--EehhhhHHHHHH
Confidence 3 3 556666666654
No 88
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.22 E-value=3.4e-10 Score=107.70 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=111.9
Q ss_pred EEEECCChHHHHHH-HHHH----hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652 74 VVVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148 (352)
Q Consensus 74 vvVvGgG~~g~e~A-~~l~----~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~ 148 (352)
=.|++.+.+|+|.+ ..+. ++|.+|+++...+..++. .++.+.+.+.+++.|+++++++.|.+++.. ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence 36789999999999 6564 479999999888777653 378888999999999999999999999854 34555
Q ss_pred EEEcCCCC--EEEcCEEEEccCCCCCchhh-----------------------------------hhcCCcccCCcEEeC
Q 018652 149 AVKLEDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVD 191 (352)
Q Consensus 149 ~v~~~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~vd 191 (352)
.+...+|+ .+++|.+|+|+|..+...+. ...|+..|+....+|
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 55555553 58999999999987654331 122333333333344
Q ss_pred CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 192 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 192 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
...++..+|+||+|++...+++..-.. .-..|...|-.|+++|..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE 418 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence 444456899999999998776532111 112367777777777763
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.09 E-value=1.9e-10 Score=99.22 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=62.9
Q ss_pred ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCC--CCCCCCCCCC-CCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652 2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYIRDVADADALISSLEKAKKVVV 76 (352)
Q Consensus 2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~--~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV 76 (352)
+++++|++++.++ ..|++++++.+.+|+||+|||. .|+ .|.+++ ... ...+..++.+. ....+++|+|
T Consensus 100 ~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~~~~~~~-----~~~~~k~V~V 172 (203)
T PF13738_consen 100 RFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHSADWRDP-----EDFKGKRVVV 172 (203)
T ss_dssp ETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEGGG-STT-----GGCTTSEEEE
T ss_pred ccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEehhhcCCh-----hhcCCCcEEE
Confidence 5789999998655 5899999988999999999996 554 455566 323 33333222111 1246799999
Q ss_pred ECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652 77 VGGGYIGMEVAAAAVGWKLDTTIIFPENH 105 (352)
Q Consensus 77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~ 105 (352)
||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus 173 VG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 173 VGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp E--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred EcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 99999999999999999999999999863
No 90
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=99.05 E-value=2.1e-09 Score=78.98 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=64.4
Q ss_pred eeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCChh
Q 018652 251 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 327 (352)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (352)
||||+||+.. +|++|.... +.+.+|+.+ .+|..+|+++|+++|++. .|.+.++..++++|+.+..+++.
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 8999999864 999998653 678888876 789999999999999997 89999999999999999999999
Q ss_pred hhcCCCchHH
Q 018652 328 KLQQASSVEE 337 (352)
Q Consensus 328 ~~~~~~~~~e 337 (352)
.+.++..-..
T Consensus 73 ~l~d~~~~L~ 82 (85)
T PF14759_consen 73 RLADPSVDLR 82 (85)
T ss_dssp HHHSTTSHHH
T ss_pred HhcCCCCChH
Confidence 8888776443
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.99 E-value=6.4e-09 Score=95.05 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=79.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASIK 137 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~~v~ 137 (352)
+++|||||+.|+++|..|++.|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ ..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 689999999999999999999999999997641 1 111 12357788888999999999998 7899
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
+++..+ ....+.+.+++++.+|.+|+|+|..|+..
T Consensus 81 ~v~~~~--~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSD--RPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecC--CeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 998642 22356777888999999999999988643
No 92
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.94 E-value=1.9e-08 Score=92.43 Aligned_cols=111 Identities=15% Similarity=0.246 Sum_probs=87.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---------------------------------------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------------------------------------------- 105 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~--------------------------------------------- 105 (352)
...|+|||||+.|+-+|..+++.|.+|++++..+.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 35799999999999999999999999999998722
Q ss_pred --------------------cccc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 106 --------------------LLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 106 --------------------~~~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
+++. .-...+.+.+...+++.||+++++++|.+|+.++ ....+.+.+|+++.||.+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEE
Confidence 1221 1123566778888999999999999999998653 4457889999899999999
Q ss_pred EccCC--CCCc-------hhhhhcCCcc
Q 018652 165 IGIGA--KPTV-------SPFERVGLNS 183 (352)
Q Consensus 165 ~a~G~--~p~~-------~~~~~~gl~~ 183 (352)
+|+|- -|.+ +++++.|++.
T Consensus 161 lAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 161 LATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 99994 4532 3577777664
No 93
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.75 E-value=8e-08 Score=91.68 Aligned_cols=99 Identities=26% Similarity=0.396 Sum_probs=73.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcc-ccc-ccCHHHH---------HHHHHHHHhCCcEEEcCCeEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL-LQR-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK 137 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~-~~~-~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~ 137 (352)
.++++|||||+.|+.+|..|++.+. +|+++++.+.+ ..+ .+...+. ..-.+.+.+.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999999876 79999876532 111 1111110 001344677899999999999
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
.++.. .+ .+.+++|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence 99753 22 5667888899999999999999863
No 94
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.72 E-value=1.1e-07 Score=90.26 Aligned_cols=109 Identities=19% Similarity=0.338 Sum_probs=71.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc----------------------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------- 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------------------------- 106 (352)
+|+|||||++|+-+|..+++.|.+|+|+++++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999988221
Q ss_pred --------------------cccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 107 --------------------LQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 107 --------------------~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
.|.. -..++.+.+.+.+++.||+++++++|.++... ++....|.+++++.+.||.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 1111 12345577788889999999999999999865 4455678887778999999999
Q ss_pred ccCCCCCc---------hhhhhcCCc
Q 018652 166 GIGAKPTV---------SPFERVGLN 182 (352)
Q Consensus 166 a~G~~p~~---------~~~~~~gl~ 182 (352)
|+|..... .+++++|..
T Consensus 161 AtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 161 ATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred ecCCCCccccCCCcHHHHHHHHCCCc
Confidence 99976432 346666654
No 95
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.71 E-value=1.5e-06 Score=77.59 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=103.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------ccc---------------------------cCH
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------QRL---------------------------FTP 113 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------~~~---------------------------~~~ 113 (352)
..+|+|||+|+.|+-+|..|++.|.+|.++++...+. +.. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5679999999999999999999999999999875431 000 112
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC-cEEEEEcC-----------CCCEEEcCEEEEccCCCCCc-hhh-hhc
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPF-ERV 179 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~~~-~~~ 179 (352)
++.+.+.+...+.|++++.++.+.++...++. ++..+... +...++++.||.|+|..... .++ +..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 34455666677889999999999998754332 46666543 12478999999999976532 232 232
Q ss_pred CCcccC------CcEEeCC--CC---CC--CCCCEEEeccccccC--CccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 180 GLNSSV------GGIQVDG--QF---RT--RMPGIFAIGDVAAFP--LKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 180 gl~~~~------g~i~vd~--~~---~t--~~~~Iya~GD~a~~~--~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
++.... +....+. .+ .| -+|++|++|=.+.-. .+..|+ .+..-...|+.+|+.++.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp-----~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGP-----IFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCc-----hHHHHHHhhHHHHHHHHH
Confidence 322110 0111110 00 12 379999999876532 222222 222223468888887763
No 96
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.71 E-value=2.2e-07 Score=91.62 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=80.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI 136 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~~-----------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v 136 (352)
...+|+|||||+.|+.+|..+++.|.+|+++... ..+. +...++++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3478999999999999999999999999999642 1111 11234567788888899999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+++..++ ...+.+++|+.+.+|.+|+|+|..|.
T Consensus 291 ~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 291 KKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence 99975432 23567788889999999999999875
No 97
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.69 E-value=1.3e-07 Score=81.39 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=67.7
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEecCCcccc--------------c----------------------------cc
Q 018652 75 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF 111 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~--------------~----------------------------~~ 111 (352)
+|||+|+.|+-+|..|.+.|.+ ++++++++.+.. . ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998733200 0 01
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC--CCCch
Q 018652 112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS 174 (352)
Q Consensus 112 ~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 174 (352)
.+++.+++++..++.++++.++++|+++..++++ ..|++++++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245577888889999999999999999987555 5788999988999999999997 55543
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.69 E-value=1e-06 Score=78.81 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=102.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 113 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------------------------------------~~~~ 113 (352)
...|+|||+|+.|+-+|..|++.|.+|.++++...+-.. .-..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 467999999999999999999999999999977543110 0112
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCch-hh-hhcC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERVG 180 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~g 180 (352)
.+...+.+...+.|++++.++.+..+...+++++..+... +...+.++.||.|+|...... .+ +...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 3445566667888999999999999875444455554432 224799999999999765421 12 2111
Q ss_pred ---Cccc-CCc--------EEeCCCCCCCCCCEEEeccccccCC--ccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 181 ---LNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAAFPL--KMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 181 ---l~~~-~g~--------i~vd~~~~t~~~~Iya~GD~a~~~~--~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.... .+. ..|+..-+ -.|++|++|=.+.... +..|+ .+..-...|+.+|+.++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~-----~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGP-----IFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCc-----hhHhHHHhHHHHHHHHHH
Confidence 1110 011 11222111 3699999998876322 22222 222223467888877764
No 99
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.68 E-value=3e-07 Score=90.75 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=81.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 137 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~ 137 (352)
..+++|||||+.|+.+|.++++.|.+|+++.+. ... .+...++++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 358999999999999999999999999999753 111 1112356788889999999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
++...+ ....+.+.+|+++.+|.+|+|+|.+|.
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 998643 233667788889999999999999875
No 100
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.65 E-value=2.6e-07 Score=89.49 Aligned_cols=102 Identities=24% Similarity=0.432 Sum_probs=72.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc------ccccc----C--HHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------LQRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK 137 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~------~~~~~----~--~~~~~~l~~~l~~~gV~~~~~~~v~ 137 (352)
++++|||||+.|+.+|..|++++ .+|+|+++++.+ ++... . .++.....+.+++.||+++.++.+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 489999988753 11111 1 1122233466788999999999999
Q ss_pred EEEecCCCcEEEEEc-CCCCEEE--cCEEEEccCCCCCchh
Q 018652 138 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSP 175 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~~ 175 (352)
+++.++ .. ..+.. .+++.++ +|.+|+|||.+|+...
T Consensus 81 ~id~~~-~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKN-KT-ITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCC-CE-EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 998542 22 23322 2356666 9999999999987543
No 101
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.64 E-value=6.2e-08 Score=87.97 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=49.0
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH-------HHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652 25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DALISSLEKAKKVVVVGGGYIGMEVAAAAV 91 (352)
Q Consensus 25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~-------~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 91 (352)
-.||.+|||+|+.-.+-..+||++++||+..+.+-.. +.+.-.+ .+.+|+|||.|++++++|..|.
T Consensus 107 ~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 107 DNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred hcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhhhhh
Confidence 3799999999997655567899999999876543321 1111122 3789999999999999999875
No 102
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.60 E-value=3.1e-06 Score=82.09 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------- 109 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------------------------------------- 109 (352)
..++|+|||+|++|+-+|..|.+.|.+|+++++++.+-..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 4688999999999999999999999999999976422100
Q ss_pred ----c---------------cCHHHHHHHHHHHHhCCcE--EEcCCeEEEEEecCCCcEEEEEcCCC--C--EEEcCEEE
Q 018652 110 ----L---------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIV 164 (352)
Q Consensus 110 ----~---------------~~~~~~~~l~~~l~~~gV~--~~~~~~v~~i~~~~~~~~~~v~~~~g--~--~i~~D~vi 164 (352)
. -..++.+++++..+..|+. +.++++|+++++.+ +. ..|.+.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence 0 0135667788888888988 88999999998642 32 34554432 2 46799999
Q ss_pred EccC--CCCCch
Q 018652 165 IGIG--AKPTVS 174 (352)
Q Consensus 165 ~a~G--~~p~~~ 174 (352)
+|+| ..|+.+
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 466644
No 103
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.60 E-value=2.6e-07 Score=87.12 Aligned_cols=97 Identities=20% Similarity=0.329 Sum_probs=72.5
Q ss_pred eEEEECCChHHHHHHHHHHhC---CCcEEEEecCCccc-cccc---------CHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL-QRLF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL 139 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~~-~~~~---------~~~~~~~l~~~l~~~gV~~~~~~~v~~i 139 (352)
+|+|||||+.|+.+|..|+++ +.+|+|+++++... ...+ ..++...+.+.+++.||+++.+ .++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999643 68899999876431 1111 1123333556677889999875 78999
Q ss_pred EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
+... + .|.+.+|+++++|.+|+|+|.+|+..
T Consensus 80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence 7542 2 57788898899999999999998754
No 104
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=2.5e-06 Score=80.55 Aligned_cols=227 Identities=20% Similarity=0.284 Sum_probs=130.8
Q ss_pred cCCceEEEECC----CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcE-EEecCHHHHHHHHHhhcCCCeEEEE
Q 018652 3 YQDPVTSIDIE----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVV 77 (352)
Q Consensus 3 ~~~~V~~id~~----~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~vvVv 77 (352)
.+++++++.+. ...+++.+|....+|-+|+|||..+...+. -..+.++- -++.+...... +..+....+|+|+
T Consensus 125 ~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~ 202 (474)
T COG4529 125 IREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIV 202 (474)
T ss_pred EeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEe
Confidence 45566666655 236777889989999999999987543222 11222221 12333332322 2234556679999
Q ss_pred CCChHHHHHHHHHHhCCC--cEEEEecCCccccc----------------------------------------------
Q 018652 78 GGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR---------------------------------------------- 109 (352)
Q Consensus 78 GgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~~---------------------------------------------- 109 (352)
|+|.+.++....|+++|+ +||++.|.. +.++
T Consensus 203 GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~ 281 (474)
T COG4529 203 GSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVV 281 (474)
T ss_pred cCCchhHHHHHHHhccCCccceEEEeccc-cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999875 589998872 1000
Q ss_pred -----------------------------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-
Q 018652 110 -----------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE- 153 (352)
Q Consensus 110 -----------------------------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~- 153 (352)
-+.+.+...+.+.+.+.-++++- .++..|.....+........
T Consensus 282 D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~a-g~~~~i~~~~eg~~v~~r~rg 360 (474)
T COG4529 282 DGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVA-GRVVSIDREGEGRAVTYRERG 360 (474)
T ss_pred HhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheec-CceeecccccCCceEEeeccc
Confidence 01112222222222222334443 34566655444432222222
Q ss_pred -CC-CEEEcCEEEEccCCCCCch-----hhh---hcCCcc-c--CCcEEeCCCCCC------CCCCEEEeccccccCCcc
Q 018652 154 -DG-STIDADTIVIGIGAKPTVS-----PFE---RVGLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFPLKM 214 (352)
Q Consensus 154 -~g-~~i~~D~vi~a~G~~p~~~-----~~~---~~gl~~-~--~g~i~vd~~~~t------~~~~Iya~GD~a~~~~~~ 214 (352)
+. +.+++|.||-|+|..+... ++. +.|+.. + ..|+.|++..+. ..++.|++|-.+......
T Consensus 361 ~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~e 440 (474)
T COG4529 361 KQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWE 440 (474)
T ss_pred cCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhh
Confidence 12 3689999999999876432 333 334432 2 467888887664 468899999888654211
Q ss_pred CCcccccccHHHHHHHHHHHHHHHh
Q 018652 215 YDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 215 ~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
+..+..-..|+..+|..++
T Consensus 441 ------i~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 441 ------IDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred ------hccChHHHHHHHHHHHHHh
Confidence 2233334566666666666
No 105
>PRK06847 hypothetical protein; Provisional
Probab=98.58 E-value=8.4e-07 Score=83.91 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=78.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------- 108 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------------- 108 (352)
+.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 357899999999999999999999999999997632100
Q ss_pred ----cc----------------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 109 ----RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 109 ----~~----------------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
.. ..+.+.+.+.+.+.+.|++++.++++++++..++ . ..+.+.+|+++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-G-VTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-E-EEEEEcCCCEEEcCEEEECcC
Confidence 00 0124455666777778999999999999985433 2 357788999999999999999
Q ss_pred CCCCc
Q 018652 169 AKPTV 173 (352)
Q Consensus 169 ~~p~~ 173 (352)
..+..
T Consensus 161 ~~s~~ 165 (375)
T PRK06847 161 LYSKV 165 (375)
T ss_pred CCcch
Confidence 87754
No 106
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.58 E-value=3.9e-07 Score=87.73 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=72.5
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKN 138 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~gV~~~~~~~v~~ 138 (352)
...+++||||||+.|+.+|..|.+.+.+||+|++++...-... ...+...+.+.++..+++++. .+|++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~ 86 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYD 86 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEE
Confidence 3567899999999999999999877789999998875422111 112333355667778899876 47999
Q ss_pred EEecCCCcEEEEEc----------CCCCEEEcCEEEEccCCCCCc
Q 018652 139 LEAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 139 i~~~~~~~~~~v~~----------~~g~~i~~D~vi~a~G~~p~~ 173 (352)
|+..+ + .|.+ .+|+++++|.+|+|+|.+|+.
T Consensus 87 Id~~~--~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 87 VDFEE--K--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EEcCC--C--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 98542 2 2333 456789999999999999864
No 107
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.55 E-value=1.7e-07 Score=90.42 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=67.7
Q ss_pred ccCCceEEEECCC----cEEEeCCCeE--EecCeEEEccCCC--CCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCe
Q 018652 2 IYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 73 (352)
Q Consensus 2 ~~~~~V~~id~~~----~~V~~~~g~~--~~yd~lViAtG~~--~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 73 (352)
.++..|..++.++ .+|+++++.. +.+|+||+|||.. |+ .|.++|.+......+++ .+........+|+
T Consensus 102 ~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f~g~~~HS---~~~~~~~~~~GKr 177 (443)
T COG2072 102 RFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEFKGRILHS---ADWPNPEDLRGKR 177 (443)
T ss_pred EcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCCCceEEch---hcCCCccccCCCe
Confidence 3455566565443 3788888765 4599999999974 32 45445533222112211 1111112347999
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652 74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 105 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~ 105 (352)
|+|||+|.+|+++|..|.+.|.+||++.|++.
T Consensus 178 V~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred EEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 99999999999999999999999999998864
No 108
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.55 E-value=2.3e-06 Score=82.17 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCC--EEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC
Q 018652 126 NGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG 192 (352)
Q Consensus 126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~ 192 (352)
+.+.+++.....+|.. .++++..+++. .|+ .++||+|+-++|++... +. +++.+ ..+.. .
T Consensus 324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~--g~pFd-~~~~n-~ 396 (506)
T PTZ00188 324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FA--ENLYN-QSVQM-F 396 (506)
T ss_pred eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CC--CCCcc-ccCCC-C
Confidence 3467777788888874 24566666665 333 68999999999998642 22 22333 12221 1
Q ss_pred CCCC--CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652 193 QFRT--RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 193 ~~~t--~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 238 (352)
..+. ..|++|++|-+-..|....|. +...|...+..+.+.+
T Consensus 397 ~grv~~~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 397 KEDIGQHKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCcccCCCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 1222 369999999998877654443 2233555555554444
No 109
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.54 E-value=3.9e-07 Score=94.07 Aligned_cols=98 Identities=20% Similarity=0.459 Sum_probs=74.1
Q ss_pred EEEECCChHHHHHHHHHHhCC---CcEEEEecCCccc-cc-----ccC-----HHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652 74 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL-QR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL 139 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~~~-~~-----~~~-----~~~~~~l~~~l~~~gV~~~~~~~v~~i 139 (352)
++|||+|+.|+.+|..|++++ .+|||+++.+++. .+ .+. +++.....+.+++.||++++++.|+.|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988754 6899999887642 11 111 111122346678899999999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652 140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175 (352)
Q Consensus 140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 175 (352)
+.. .+ .|.+.+|+++++|.+|+|||..|+...
T Consensus 81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 854 22 567788989999999999999987543
No 110
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.53 E-value=3.2e-06 Score=79.34 Aligned_cols=179 Identities=25% Similarity=0.402 Sum_probs=107.6
Q ss_pred EEecCeEEEccCCCCCCCCCCC--C-CCCCcEEEecCHHHHHHHHHh-------------hcCCCeEEEE---CCCh---
Q 018652 24 LLKYGSLIVATGCTASRFPEKI--G-GYLPGVHYIRDVADADALISS-------------LEKAKKVVVV---GGGY--- 81 (352)
Q Consensus 24 ~~~yd~lViAtG~~~~~~~~~~--g-~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~vvVv---GgG~--- 81 (352)
++..-.+|+|||-.++...... | ...+++.+- .+.+++... ...+++|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 4667789999998765322111 1 113444322 223333210 1245677765 5433
Q ss_pred -----------HHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652 82 -----------IGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148 (352)
Q Consensus 82 -----------~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~ 148 (352)
.++--|....++ ..+|+++...- |.++....+++.+.-++.||+++.+. +.+|...+++. .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDi----RafG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDI----RAFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEe----eccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence 122223333333 35678776654 34566666777776668999999875 66666555555 2
Q ss_pred EEEcCC---C--CEEEcCEEEEccCCCCCch---hhhhcCCccc-CCcEEeC-CCCC---CCCCCEEEeccccccC
Q 018652 149 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAAFP 211 (352)
Q Consensus 149 ~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~~---t~~~~Iya~GD~a~~~ 211 (352)
.|..+| | .++++|+|++++|..|... +.+-+||..+ +|++... +.++ |+.++||.+|-|..+.
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk 524 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK 524 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc
Confidence 343333 3 3789999999999998542 4566788765 6777754 5554 5889999999776543
No 111
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.52 E-value=6.4e-07 Score=92.72 Aligned_cols=102 Identities=19% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCcEEEEecCCccc------ccccC----HHHHHHHHHHHHhCCcEEEcCCeE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI 136 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~------~~~~~----~~~~~~l~~~l~~~gV~~~~~~~v 136 (352)
.++++|||+|+.|+.+|..|+++ +.+||++.+.+++. +..+. .++.....+++++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 46899998887642 11111 122222345678899999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
..++.. .+ .|.+.+|+++++|.+|+|||.+|....+
T Consensus 83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence 999753 22 5667888899999999999999875433
No 112
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.50 E-value=6.5e-07 Score=84.08 Aligned_cols=99 Identities=23% Similarity=0.437 Sum_probs=76.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccc----------cCHHHHHHHHHHHHhCC-cEEEcCCeE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNG-VKFVKGASI 136 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~----------~~~~~~~~l~~~l~~~g-V~~~~~~~v 136 (352)
..+++||+|||+.|+.+|..|.+.- .+||+|++.+..+-.. -..++...+.+.+++.+ |+++.+ +|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EE
Confidence 3578999999999999999999874 8899999886532211 12344456777888565 999875 58
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
+.|+.+ ++ .|.+.++..++||.+|+++|..+++
T Consensus 81 ~~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 81 TDIDRD--AK--KVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred EEEccc--CC--EEEeCCCccccccEEEEecCCcCCc
Confidence 999754 22 6778887789999999999999875
No 113
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=3.5e-07 Score=87.43 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=96.8
Q ss_pred CccCCceEEEECCC---cEEEeCCC----eEEecCeEEEccCCCC-CCCCCCCCC---CCCcEEEecCHHHHHHHHHhhc
Q 018652 1 MIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPEKIGG---YLPGVHYIRDVADADALISSLE 69 (352)
Q Consensus 1 ~~~~~~V~~id~~~---~~V~~~~g----~~~~yd~lViAtG~~~-~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~ 69 (352)
+.++++|..+++.. ..|.+.+. ...-||.|++|||... .++|.+++. ..+|- .+ +..+.-.....
T Consensus 109 i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~-~i---HS~~Yk~~e~f 184 (448)
T KOG1399|consen 109 INFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGK-II---HSHDYKSPEKF 184 (448)
T ss_pred eEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCc-ce---ehhhccCcccc
Confidence 45778888888654 36766543 4678999999999883 235555442 22331 11 11111122234
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+|+|+|||.|.+|++++..+++...+|++..+ ...... .. ...+ -.++..+.. +..++. ++ .
T Consensus 185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~-------~~~~-~~~~~~~~~--i~~~~e--~~---~ 247 (448)
T KOG1399|consen 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EP-------PEIL-GENLWQVPS--IKSFTE--DG---S 247 (448)
T ss_pred cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cc-------ccee-ecceEEccc--cccccC--cc---e
Confidence 689999999999999999999988888887654 100000 00 0000 112222222 444432 22 3
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 180 (352)
+.+.++....+|.+|+|||+.-..++++..+
T Consensus 248 ~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 248 VFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred EEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 4556777889999999999998777776553
No 114
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.48 E-value=1.4e-06 Score=81.51 Aligned_cols=95 Identities=25% Similarity=0.443 Sum_probs=70.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc-----------------------------------------c---
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L--- 107 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~-----------------------------------------~--- 107 (352)
+|+|||||..|+|.|..+++.|.+|.++... +.+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999533 110 0
Q ss_pred --c------cccC-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 108 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 108 --~------~~~~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
+ .+.+ ..+...+++.+++ .+++++ ..+|+++.. +++++..|.+.+|+.+.+|.||++||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 0122 2455667777777 589987 467999975 468899999999999999999999999
No 115
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.47 E-value=6.4e-07 Score=93.68 Aligned_cols=93 Identities=24% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|++.|++|||+++.+++.. ..++.++.+...+.+++.||++++|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 479999999999999999999999999999998764422 113556666777788999999998864311
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 172 (352)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 3556665556899999999984 54
No 116
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.46 E-value=1.3e-06 Score=84.44 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccccc--ccCHHH-------HHHH----HHHHHhCCcEEEcCCeE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--LFTPSL-------AQRY----EQLYQQNGVKFVKGASI 136 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~--~~~~~~-------~~~l----~~~l~~~gV~~~~~~~v 136 (352)
++|+|||||+.|+.+|..|+++ +.+|+|+++++.+.-. .++.-. ...+ .+..++.||+++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 5789999988643210 011110 1111 23335679999999999
Q ss_pred EEEEecCCCcEEEEEcCC-CC--EEEcCEEEEccCCCCCch
Q 018652 137 KNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~~ 174 (352)
++|+.+ .+...+...+ ++ ++++|.+|+|||.+|+..
T Consensus 82 ~~Id~~--~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAINDE--RQTVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEECC--CCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 999854 2322333222 22 468999999999998743
No 117
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.46 E-value=7.2e-07 Score=83.76 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=70.0
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE 140 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~ 140 (352)
..+++++|||+|+.|+++|..|++.|.+|+++++.+.+.... .+.+......+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 467899999999999999999999999999999887653211 122333334455677799999998876553
Q ss_pred e---cCCCcE--EEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652 141 A---GSDGRV--AAVKLEDGSTIDADTIVIGIGAK-PT 172 (352)
Q Consensus 141 ~---~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~-p~ 172 (352)
. ..+... ..+..+ +..+.+|.||+|+|.. |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred ccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence 2 111111 011111 1247899999999984 54
No 118
>PRK07236 hypothetical protein; Provisional
Probab=98.44 E-value=1.8e-06 Score=82.06 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHHHHHH------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------ 120 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~~~~~~~l~------------------------ 120 (352)
...+|+|||||+.|+.+|..|++.|.+|+|+++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999987643211 02222222222
Q ss_pred -------------------HHHHh--CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 121 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 121 -------------------~~l~~--~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
+.|.+ .+++++.++++++++..++ . ..+.+.+|+++.+|+||.|-|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-R-VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-e-EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 1356889999999986533 3 35788999999999999999987643
No 119
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.43 E-value=1.4e-06 Score=81.31 Aligned_cols=65 Identities=31% Similarity=0.508 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 181 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 181 (352)
.+.+.+.+.+++.|++++.+++|+++... ++.+..|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus 148 ~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 148 RLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred chhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 45566667778899999999999999864 5566669999997 999999999998654 35555544
No 120
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.42 E-value=1.6e-06 Score=89.94 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||||+.|+.+|..|+++|.+|+++++.+.+... .++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 4689999999999999999999999999999987654221 123444455557788899999999866 222
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+.+.+...+|.||+|||..+.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 223334669999999999754
No 121
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.40 E-value=4.8e-06 Score=75.72 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=73.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------- 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------------- 108 (352)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998743210
Q ss_pred -----cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccCCCC
Q 018652 109 -----RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 109 -----~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p 171 (352)
......+.+.+.+.+.+.|++++.+++++++...++ .+ .+.+. ++.++++|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 001224556677778889999999999999875433 22 33333 345799999999999865
No 122
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.40 E-value=2.5e-06 Score=80.83 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=70.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc-ccc-ccC---------HHHHH-HHHHHHHhCCcEEEcCCeEE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL-LQR-LFT---------PSLAQ-RYEQLYQQNGVKFVKGASIK 137 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~-~~~-~~~---------~~~~~-~l~~~l~~~gV~~~~~~~v~ 137 (352)
++++|||+|+.|+.+|..|++++ .+||++.+++.. ..+ .+. .++.. ...+.+++.||+++.++.|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998864 579999876532 111 111 11111 13355677899999999999
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
+++.. + + .+.+ +++.+.+|.+|+|||.+|...
T Consensus 83 ~id~~-~-~--~v~~-~~~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDAE-A-Q--VVKS-QGNQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEECC-C-C--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence 99853 2 2 3443 567899999999999998643
No 123
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.39 E-value=1.2e-06 Score=85.16 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||||+.|+++|..|+++|.+|+++++.+.+.. . ..+.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 467999999999999999999999999999998865421 1 13556777777888999999999876521
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
.+.+++.. +.+|.||+|+|..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12233333 7899999999985
No 124
>PRK06834 hypothetical protein; Provisional
Probab=98.36 E-value=6.2e-06 Score=80.76 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=75.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---ccc--------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL-------------------------------------- 110 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---~~~-------------------------------------- 110 (352)
..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+. ++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999763210 000
Q ss_pred ---c-----------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 111 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 111 ---~-----------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
+ -+.+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|+||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 0 0123344556667789999999999999865443 24667788889999999999998753
No 125
>PRK10262 thioredoxin reductase; Provisional
Probab=98.36 E-value=8.7e-06 Score=75.42 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC---cc--------cc----cccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKGA 134 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~---~~--------~~----~~~~~~~~~~l~~~l~~~gV~~~~~~ 134 (352)
..++|+|||||+.|+.+|..|+++|.++++++... .+ ++ ....+.+.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46789999999999999999999999999886321 11 01 1123345677778788888888765
Q ss_pred eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
.+..++.. ++. ..+..++ ..+.+|.||+|+|..|+.
T Consensus 84 ~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence 46677643 222 2344333 368999999999999864
No 126
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.7e-05 Score=71.20 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=75.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCc-EEEEecCC-c--------------ccccccCHHHHHHHHHHHHhCCcEEEcCCe
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN-H--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 135 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~-~--------------~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~ 135 (352)
..|+|||+|+.|+..|-++.+.+.+ +.+++... . +-....++++.+.+.+..+..++++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4699999999999999999999988 44444421 0 011135667788888888888999987 66
Q ss_pred EEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 136 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 136 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
+.+++..++ ...|++.+++ +.++.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777775432 5688888888 9999999999998763
No 127
>PLN02463 lycopene beta cyclase
Probab=98.36 E-value=5e-06 Score=80.22 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=73.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-ccc----------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---------------------------------------- 110 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~~---------------------------------------- 110 (352)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999999764211 100
Q ss_pred ---cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 111 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 111 ---~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
....+.+.+.+.+.+.|++++ ..+|++++..+++ ..|.+++|+++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011223455566677899997 4689999854332 4678889989999999999998764
No 128
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.35 E-value=5.9e-06 Score=78.71 Aligned_cols=100 Identities=27% Similarity=0.392 Sum_probs=75.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------c-c-----------------c----------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-Q-----------------R---------- 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------~-~-----------------~---------- 109 (352)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+ + + .
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 457999999999999999999999999999975310 0 0 0
Q ss_pred ---------cc---------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 110 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 110 ---------~~---------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
.+ ...+.+.+.+.+++.|++++.++++++++.+++ .+ .+++++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEE
Confidence 00 012334455666778999999999999985433 33 57778888999999999
Q ss_pred ccCCCCC
Q 018652 166 GIGAKPT 172 (352)
Q Consensus 166 a~G~~p~ 172 (352)
|.|..+.
T Consensus 164 AdG~~S~ 170 (392)
T PRK08773 164 ADGAAST 170 (392)
T ss_pred ecCCCch
Confidence 9999875
No 129
>PRK07045 putative monooxygenase; Reviewed
Probab=98.34 E-value=8.3e-06 Score=77.60 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 108 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------ 108 (352)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999996632100
Q ss_pred ---cc-------cC-------HHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 109 ---RL-------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 109 ---~~-------~~-------~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
.. .+ ..+.+.+.+.+. ..|++++++++++.++..+++.+..|++++|+++.+|+||.|.|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 00 00 012233344443 3479999999999998766665557888899999999999999987
Q ss_pred CC
Q 018652 171 PT 172 (352)
Q Consensus 171 p~ 172 (352)
..
T Consensus 165 S~ 166 (388)
T PRK07045 165 SM 166 (388)
T ss_pred hH
Confidence 64
No 130
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.33 E-value=1.8e-06 Score=83.66 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~-~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. + ..+++++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 45789999999999999999999999999999876541 1 114556666677788899999999874410
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 172 (352)
.+.+.+. ...+|.||+|+|. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 2333333 3579999999997 565
No 131
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.33 E-value=4.7e-06 Score=80.85 Aligned_cols=96 Identities=24% Similarity=0.384 Sum_probs=68.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc------------------------------C---------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF------------------------------T--------- 112 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~------------------------------~--------- 112 (352)
..++|||+|+.|+.+|..++++|.+|+++++. .+-..+. .
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 36899999999999999999999999999974 1111000 0
Q ss_pred --------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 113 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 113 --------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
..+.+.+++.+++.||+++.+ ++..++.. .+ .+. .+|+.+++|.+|+|||.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~---~v-~v~-~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPN---TV-EVL-QDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCC---EE-EEe-cCCeEEEcCEEEEecCCcCCCC
Confidence 123345566678899999876 45555421 22 232 4677899999999999998644
No 132
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=9.2e-06 Score=77.44 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------c------------c-----
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L----- 110 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------~------------~----- 110 (352)
...+|+|||||..|+-+|..|++.|.+|+|+++.+.+.. . .
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 356899999999999999999999999999997633200 0 0
Q ss_pred --------cC----------------HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 111 --------FT----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 111 --------~~----------------~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
++ ..+.+.+.+.+.+. +++++.++.+++++.+++ . ..+.+.+|+++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-G-VTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-c-eEEEEcCCCEEecCEEEE
Confidence 00 01123334444444 499999999999985433 3 357778888999999999
Q ss_pred ccCCCCCc
Q 018652 166 GIGAKPTV 173 (352)
Q Consensus 166 a~G~~p~~ 173 (352)
|.|.....
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99987643
No 133
>PRK12831 putative oxidoreductase; Provisional
Probab=98.30 E-value=2.2e-06 Score=83.37 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCH-HHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE 140 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~-~~~~~l~~~l~~~gV~~~~~~~v~~i~ 140 (352)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +. .++. .+.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46799999999999999999999999999999765431 11 0122 2555666778889999999985521
Q ss_pred ecCCCcEEEEEcCCC-CEEEcCEEEEccCC-CCC
Q 018652 141 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 172 (352)
Q Consensus 141 ~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 172 (352)
.+.+++. +.+.+|.||+|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 24579999999998 565
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.30 E-value=1.1e-05 Score=80.41 Aligned_cols=98 Identities=29% Similarity=0.423 Sum_probs=74.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------c---cccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASI 136 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------~---~~~~~~~~~~l~~~l~~~gV~~~~~~~v 136 (352)
..|+|||||+.|+.+|..|++.|.+|+++++.. +. + ...++.+.+.+.+.+++.|++++ ++.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 579999999999999999999999999999753 21 0 01124566777788888999986 6678
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
..++.. +....+.+.++ .+.+|.+|+|+|..|...
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 888753 23335666555 589999999999998643
No 135
>PRK08244 hypothetical protein; Provisional
Probab=98.29 E-value=1e-05 Score=79.54 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=74.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------c----
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------R---- 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------------------------~---- 109 (352)
..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.. .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 4699999999999999999999999999997622100 0
Q ss_pred -------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCC
Q 018652 110 -------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 172 (352)
Q Consensus 110 -------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~ 172 (352)
.++ ..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 000 1344556666778899999999999998654443223333356 47999999999999875
No 136
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.27 E-value=3.2e-06 Score=82.07 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=67.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHh--CCCcEEEEecCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN 138 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~~~~~~---------~~~~~~~~l~~~l~~~gV~~~~~~~v~~ 138 (352)
.+++|+|||+|+.|+.+|..|++ .|++|+|+++.+.+.... ....+...+.+.+++.+|+++.|..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46799999999999999999987 799999999987653210 1123445566777888999998754411
Q ss_pred EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+++-+ ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 23343333 469999999999763
No 137
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.26 E-value=6.9e-06 Score=78.96 Aligned_cols=92 Identities=12% Similarity=0.189 Sum_probs=62.8
Q ss_pred CCCeEEEECCChHHHHHHHHHH-hCCCcEEEEecCCcccccc---cC------HHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL 139 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~-~~g~~Vtvv~~~~~~~~~~---~~------~~~~~~l~~~l~~~gV~~~~~~~v~~i 139 (352)
.+++|+|||+|+.|+.+|..|. +.|++|+++++.+.+..-. .. ..+...+...+...+++++.|..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 5789999999999999999764 6799999999987663210 11 24455566666677888875433211
Q ss_pred EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+..++= .-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2379999999998864
No 138
>PRK07588 hypothetical protein; Provisional
Probab=98.25 E-value=1.2e-05 Score=76.54 Aligned_cols=98 Identities=23% Similarity=0.241 Sum_probs=71.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------c----------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R---------------------------------- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------~---------------------------------- 109 (352)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 699999999999999999999999999997632200 0
Q ss_pred -cc---------C--------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 110 -LF---------T--------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 110 -~~---------~--------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.+ + ..+.+.+.+.+ ..++++++++++++++..++ .+ .+.+++|+.+.+|+||-|.|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD-GV-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC-eE-EEEECCCCEEEeCEEEECCCCCc
Confidence 00 0 01112222222 34799999999999986533 33 57888999999999999999876
Q ss_pred Cc
Q 018652 172 TV 173 (352)
Q Consensus 172 ~~ 173 (352)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 54
No 139
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.25 E-value=1.3e-05 Score=76.68 Aligned_cols=106 Identities=25% Similarity=0.383 Sum_probs=78.0
Q ss_pred eEEEECCChHHHHHHHHHHhCC--CcEEEEecCCccc----------------------------c--------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL----------------------------Q-------------- 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~----------------------------~-------------- 108 (352)
+|+|||||+.|+-+|..|++.| .+|+++++.+... .
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 8999999752100 0
Q ss_pred ----------c--------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 109 ----------R--------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 109 ----------~--------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
. .....+.+.+.+.+.+.|++++.++++++++..++ . ..+.+++|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-G-VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEE
Confidence 0 00123345566667778999999999999975433 2 35777888899999999
Q ss_pred EccCCCCCchhhhhcCCc
Q 018652 165 IGIGAKPTVSPFERVGLN 182 (352)
Q Consensus 165 ~a~G~~p~~~~~~~~gl~ 182 (352)
.|.|.... +.+.+++.
T Consensus 161 ~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 161 AADGARSK--LRELAGIK 176 (403)
T ss_pred EcCCCChH--HHHHcCCC
Confidence 99998764 34444543
No 140
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.25 E-value=1.6e-05 Score=77.51 Aligned_cols=101 Identities=28% Similarity=0.478 Sum_probs=68.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----cccccc-----------------------C-----------H
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LLQRLF-----------------------T-----------P 113 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----~~~~~~-----------------------~-----------~ 113 (352)
++++|||+|+.|+++|..++++|.+|+++++..- +...+. . +
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999997630 000000 0 0
Q ss_pred H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCc
Q 018652 114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV 173 (352)
Q Consensus 114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~ 173 (352)
. ..+.+.+.+++.||+++.+. +..++...+.....|.+.+|+ ++.+|.||+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0 12234456777899999875 333221112233356666775 79999999999999863
No 141
>PRK06116 glutathione reductase; Validated
Probab=98.24 E-value=6.9e-06 Score=79.76 Aligned_cols=95 Identities=25% Similarity=0.451 Sum_probs=66.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----cc------------------------C--------H-
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF------------------------T--------P- 113 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~------------------------~--------~- 113 (352)
..++|||+|+.|+.+|..++++|.+|+++++. .+-.. +. . +
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 46999999999999999999999999999975 21000 00 0 0
Q ss_pred ----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652 114 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175 (352)
Q Consensus 114 ----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 175 (352)
.+.+.+.+.+++.||+++.+. ++.++. . .|++ +|+++.+|.+|+|||.+|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~---~---~v~~-~g~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA---H---TVEV-NGERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC---C---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence 011223445677899999874 444432 1 3444 6778999999999999987543
No 142
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.24 E-value=4.2e-06 Score=86.37 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=69.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---c----c-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q----R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---~----~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. . . .++.++.....+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46799999999999999999999999999999764331 1 0 13455666666778899999999875411
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 172 (352)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 465
No 143
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.23 E-value=1.8e-05 Score=75.24 Aligned_cols=100 Identities=29% Similarity=0.354 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC-cccc----------------------------------------c
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ----------------------------------------R 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~----------------------------------------~ 109 (352)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+ .+.+ .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3579999999999999999999999999999861 1100 0
Q ss_pred -------------------ccCHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccC
Q 018652 110 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG 168 (352)
Q Consensus 110 -------------------~~~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G 168 (352)
..-..+.+.+.+.+.+.+ |+++.++.|+.++.++ +.+. +++. +|+++.||++|-|-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence 001234566667777666 9999999999998654 3333 6677 999999999999999
Q ss_pred CCCC
Q 018652 169 AKPT 172 (352)
Q Consensus 169 ~~p~ 172 (352)
....
T Consensus 160 ~~S~ 163 (387)
T COG0654 160 ANSA 163 (387)
T ss_pred CchH
Confidence 7653
No 144
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.23 E-value=2.2e-05 Score=75.74 Aligned_cols=107 Identities=23% Similarity=0.381 Sum_probs=76.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------ccc-------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------RLF------------- 111 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------~~~------------- 111 (352)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.. +..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 5799999999999999999999999999997632100 000
Q ss_pred ---------------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 112 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 112 ---------------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
-..+.+++.+..++.|++++.++.|+++... ++.+..+. .+|.++.+|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0011234556667789999999999998754 44444444 466789999999999985
Q ss_pred CCchhhhhcCCc
Q 018652 171 PTVSPFERVGLN 182 (352)
Q Consensus 171 p~~~~~~~~gl~ 182 (352)
. .+.+.+++.
T Consensus 164 s--~l~~~lgl~ 173 (428)
T PRK10157 164 S--ILAEKLGMA 173 (428)
T ss_pred H--HHHHHcCCC
Confidence 3 445555543
No 145
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.22 E-value=1.8e-05 Score=75.03 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE-EEcCEEEEccCCCCCchhhhhcCCcc
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 183 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~ 183 (352)
++...+.+.+.++|++++++++|+.|++.+++ +..+.+.+|++ ++|+.||.|.|.... .+++.+|++.
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 34556666778889999999999999987665 55778888876 999999999998775 5677777665
No 146
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.21 E-value=4.5e-06 Score=81.29 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=69.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~-~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|++|+.+|..|+++|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46789999999999999999999999999999876542 1 1135566666778889999999999865221
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12479999999999874
No 147
>PRK05868 hypothetical protein; Validated
Probab=98.20 E-value=1.8e-05 Score=74.88 Aligned_cols=100 Identities=22% Similarity=0.218 Sum_probs=71.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------- 108 (352)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999997632100
Q ss_pred --cccC-H----H--------HHHHHHHHHH---hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 109 --RLFT-P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 109 --~~~~-~----~--------~~~~l~~~l~---~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
.... . . ....+.+.|. ..|+++++++++++++.+ ++. ..+.+++|+++++|+||-|-|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDS-VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCe-EEEEECCCCeEEeCEEEECCCCC
Confidence 0000 0 0 0112233332 358999999999999754 333 36788999999999999999987
Q ss_pred CCc
Q 018652 171 PTV 173 (352)
Q Consensus 171 p~~ 173 (352)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 643
No 148
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.19 E-value=6.1e-06 Score=80.73 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=68.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++++|||+|+.|+++|..|++.|.+|+++++.+++. +. .+++++.....+.+++.||++++++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 35799999999999999999999999999999877542 11 13456666666778999999999987631 0
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 172 (352)
+.. ++....+|.|++|+|.. |.
T Consensus 220 --------~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 220 --------ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred --------cCH-HHHHhhCCEEEEccCCCCCC
Confidence 100 11235799999999997 44
No 149
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=2e-05 Score=76.39 Aligned_cols=58 Identities=31% Similarity=0.579 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+.|.+...+.||+++.++ |+.+...+++.+..|++++|+++++|++|=|+|++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 455677777888999999885 7777767788888999999999999999999998753
No 150
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.18 E-value=1.7e-05 Score=77.43 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc--------------------------c-------CHH---
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------F-------TPS--- 114 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~--------------------------~-------~~~--- 114 (352)
..+++|||+|+.|+.+|..++++|.+|+++++.. +-..+ + ..+
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 4579999999999999999999999999999752 10000 0 001
Q ss_pred -----------HHHHHHHHHHhCCcEEEcCCeEEEEEec---CCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652 115 -----------LAQRYEQLYQQNGVKFVKGASIKNLEAG---SDGRVAAVKLEDG--STIDADTIVIGIGAKPT 172 (352)
Q Consensus 115 -----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~---~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 172 (352)
+.....+.+++.||+++.+. ++.++.. ++.....|.+.+| +++.+|.+|+|||.+|.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 11223345677899999874 4555422 1112345666777 47999999999999986
No 151
>PRK06184 hypothetical protein; Provisional
Probab=98.18 E-value=2.6e-05 Score=76.88 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=73.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c--
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-- 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------------~-- 109 (352)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.. .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 5699999999999999999999999999997622100 0
Q ss_pred ---------------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCCEEEcCEEE
Q 018652 110 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 164 (352)
Q Consensus 110 ---------------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi 164 (352)
.++ ..+.+.+.+.+.+.|++++.++++++++.++++. .+.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence 000 1223456667778899999999999998654443 3334 556789999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
.|.|....
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99998763
No 152
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.17 E-value=8e-06 Score=85.19 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 142 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~ 142 (352)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+... .++.+......+.+.+.||+++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence 578999999999999999999999999999987643211 123444555556778889999987421
Q ss_pred CCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 143 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 143 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+.+.+...+|.||+|+|..+.
T Consensus 611 ------d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 ------DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred ------ceEhhhhhcccccEEEECCCCCCC
Confidence 112233344679999999998754
No 153
>PRK09126 hypothetical protein; Provisional
Probab=98.17 E-value=2.4e-05 Score=74.47 Aligned_cols=100 Identities=23% Similarity=0.343 Sum_probs=72.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c------------------------c-----------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q------------------------R----------- 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~------------------------~----------- 109 (352)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+- . .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999764210 0 0
Q ss_pred --------ccC---------------HHHHHHHHHHH-HhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 110 --------LFT---------------PSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 110 --------~~~---------------~~~~~~l~~~l-~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
.++ ..+.+.+.+.+ +..|++++.++++++++..++ . ..|.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-G-AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-e-EEEEEcCCCEEEeCEEEE
Confidence 000 00112222222 346899999999999975433 3 357778899999999999
Q ss_pred ccCCCCCc
Q 018652 166 GIGAKPTV 173 (352)
Q Consensus 166 a~G~~p~~ 173 (352)
|.|..+..
T Consensus 162 AdG~~S~v 169 (392)
T PRK09126 162 ADSRFSAT 169 (392)
T ss_pred eCCCCchh
Confidence 99987753
No 154
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.16 E-value=2.4e-05 Score=74.87 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=73.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----------c--------------c------cc-----c------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------L--------------L------QR-----L------ 110 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----------~--------------~------~~-----~------ 110 (352)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+. . + .. .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 4699999999999999999999999999997541 0 0 00 0
Q ss_pred ------------cC---------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652 111 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163 (352)
Q Consensus 111 ------------~~---------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 163 (352)
++ ..+.+.+.+.+++.|++++.++++.+++..+++ ..|.+.+|+++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 011223445556678999999999999865443 3577888989999999
Q ss_pred EEccCCCCC
Q 018652 164 VIGIGAKPT 172 (352)
Q Consensus 164 i~a~G~~p~ 172 (352)
|.|.|....
T Consensus 161 VgAdG~~S~ 169 (405)
T PRK05714 161 VAADGANSA 169 (405)
T ss_pred EEecCCCch
Confidence 999998664
No 155
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.16 E-value=9.2e-06 Score=79.55 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=65.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|+|+|.+|+++|..|+++|.+|+++++.+. .....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 578999999999999999999999999999986642 223345666888999998875332
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
....+|+||+++|..|+.+++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHH
Confidence 1246899999999999988743
No 156
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.16 E-value=1.7e-05 Score=73.92 Aligned_cols=100 Identities=29% Similarity=0.378 Sum_probs=71.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------------------c---
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q--- 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-----------------------------------------~--- 108 (352)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999999872110 0
Q ss_pred -----------cc------------c-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcC
Q 018652 109 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD 161 (352)
Q Consensus 109 -----------~~------------~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D 161 (352)
.. + -..+.+.+.+.+++.|++++.++++..++.+.++....+... +|+ ++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 00 0 124566777788888999999999999886654432233333 343 68999
Q ss_pred EEEEccCCCCC
Q 018652 162 TIVIGIGAKPT 172 (352)
Q Consensus 162 ~vi~a~G~~p~ 172 (352)
+||-|-|....
T Consensus 163 lvVgADG~~S~ 173 (356)
T PF01494_consen 163 LVVGADGAHSK 173 (356)
T ss_dssp EEEE-SGTT-H
T ss_pred eeecccCcccc
Confidence 99999998864
No 157
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.16 E-value=2.6e-05 Score=73.90 Aligned_cols=97 Identities=21% Similarity=0.328 Sum_probs=71.7
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCccccc--------cc--------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LF-------------------------------- 111 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~--------~~-------------------------------- 111 (352)
.|+|||||+.|+-+|..|++.| .+|+++++.+.+... .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999876321000 00
Q ss_pred -----------------------CHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652 112 -----------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167 (352)
Q Consensus 112 -----------------------~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 167 (352)
...+.+.+.+.+.+ .|++++.+++++++...+++ ..+.+++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 01123344455555 49999999999999755433 35677888889999999999
Q ss_pred CCCC
Q 018652 168 GAKP 171 (352)
Q Consensus 168 G~~p 171 (352)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9764
No 158
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.16 E-value=2.9e-05 Score=74.48 Aligned_cols=101 Identities=24% Similarity=0.355 Sum_probs=70.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----cc-------------------------------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR------------------------------------- 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----~~------------------------------------- 109 (352)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+- .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999999763210 00
Q ss_pred -----cc---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCC--C-CEEEcCEEEE
Q 018652 110 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI 165 (352)
Q Consensus 110 -----~~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g-~~i~~D~vi~ 165 (352)
.+ ...+.+.+.+.+.+. ++++++++++++++.++++. .+.+.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEE
Confidence 00 011223333434443 79999999999997554332 455543 2 3699999999
Q ss_pred ccCCCCCc
Q 018652 166 GIGAKPTV 173 (352)
Q Consensus 166 a~G~~p~~ 173 (352)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987653
No 159
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.16 E-value=2.9e-05 Score=73.55 Aligned_cols=98 Identities=27% Similarity=0.342 Sum_probs=72.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------c--cc--------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LF-------------------------------- 111 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~--~~-------------------------------- 111 (352)
.|+|||+|+.|+-+|..|++.|.+|+|+++.+.+-. + .+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999998742100 0 00
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652 112 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 166 (352)
Q Consensus 112 ------------------------~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 166 (352)
...+.+.+.+.+.+.| ++++.++++++++..+ +.+ .+.+++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence 0112233444556666 9999999999997643 333 577889989999999999
Q ss_pred cCCCCC
Q 018652 167 IGAKPT 172 (352)
Q Consensus 167 ~G~~p~ 172 (352)
.|....
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 998654
No 160
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=2.6e-05 Score=75.56 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=65.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-cc-----ccCH-----------HHH----------HHH----H
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR-----LFTP-----------SLA----------QRY----E 120 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~-----~~~~-----------~~~----------~~l----~ 120 (352)
..++|||||+.|+.+|..|+++|.+|+++++.+..+ .. +.+. ++. +.+ .
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF 83 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence 479999999999999999999999999999864311 00 0110 010 111 1
Q ss_pred HHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCch
Q 018652 121 QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 121 ~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 174 (352)
+.+.+ .|++++.+ .+..++. + ...|.+.+|+ ++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~gv~~~~g-~~~~i~~---~-~~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 84 HNLADMPNIDVIDG-QAEFINN---H-SLRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHhhcCCcEEEEE-EEEEecC---C-EEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 22333 38998876 3445532 2 2355666775 699999999999998644
No 161
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.14 E-value=3.1e-05 Score=73.59 Aligned_cols=98 Identities=28% Similarity=0.363 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------cc-c------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-F------------------ 111 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------~~-~------------------ 111 (352)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.. .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999997643210 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652 112 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 166 (352)
Q Consensus 112 ------------------------~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 166 (352)
...+.+.+.+.+++.| ++++ +++++++...++ . ..+.+.+|+++.+|.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-A-ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-e-EEEEECCCCEEEeeEEEEe
Confidence 1123344555567776 9998 889999875433 3 3577888888999999999
Q ss_pred cCCCCC
Q 018652 167 IGAKPT 172 (352)
Q Consensus 167 ~G~~p~ 172 (352)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 998754
No 162
>PRK08013 oxidoreductase; Provisional
Probab=98.14 E-value=2.8e-05 Score=74.29 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=72.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------c--------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R-------------- 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------~-------------- 109 (352)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999997632100 0
Q ss_pred --------c-cC---------------HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 110 --------L-FT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 110 --------~-~~---------------~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
. +. ..+.+.+.+.+.+. |++++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 0 00 01122333444443 7999999999999765443 35677899999999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
-|-|....
T Consensus 162 gADG~~S~ 169 (400)
T PRK08013 162 GADGANSW 169 (400)
T ss_pred EeCCCCcH
Confidence 99998764
No 163
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.13 E-value=2.6e-05 Score=75.98 Aligned_cols=98 Identities=23% Similarity=0.336 Sum_probs=67.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCH-------------------------------H-
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTP-------------------------------S- 114 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~~-------------------------------~- 114 (352)
..++|||+|+.|+.+|..|++.|.+|+++++.+.+... ..+. .
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 57999999999999999999999999999986432110 0110 0
Q ss_pred ----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCch
Q 018652 115 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 115 ----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 174 (352)
..+.+.+.+++.||+++.+. +..++ .. ...+...+|+ ++.+|.+|+|||.+|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~-~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PH-TVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CC-EEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 11223445677899998774 33333 12 2345556664 699999999999998643
No 164
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.13 E-value=8.7e-06 Score=86.00 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|+++|.+|+|+++.+.+... .++.++.....+.+++.||++++++.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg---- 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG---- 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC----
Confidence 4579999999999999999999999999999987644211 1356677777788999999999986431
Q ss_pred cCCCcEEEEEcCCCC-EEEcCEEEEccCCC-CC
Q 018652 142 GSDGRVAAVKLEDGS-TIDADTIVIGIGAK-PT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~-p~ 172 (352)
. .+.+.+-. ...+|.||+|+|.. |.
T Consensus 505 -~-----~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 505 -K-----TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -C-----ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 0 11221111 24689999999984 54
No 165
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.13 E-value=4e-05 Score=75.53 Aligned_cols=138 Identities=21% Similarity=0.266 Sum_probs=83.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------cc----
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------RL---- 110 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------~~---- 110 (352)
.|+|+|||+|.+|+-.|..|.+.|.+++++++++.+.. ..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37999999999999999999999999999998743210 00
Q ss_pred -cCHHHHHHHHHHHHhCCc--EEEcCCeEEEEEecCCC---cEEEEEcC-CCC--EEEcCEEEEccCCC--CCchhhhhc
Q 018652 111 -FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV 179 (352)
Q Consensus 111 -~~~~~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~---~~~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~~~~~~ 179 (352)
-..++.++++...+..++ .+.++++|.++++.++. ....|++. +|+ +..+|.|++|+|.- |+.+.-.--
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 014677888888887776 57899999999875442 22345554 343 35699999999974 554320011
Q ss_pred CCcccCCcEEeCCCCCC----CCCCEEEecccc
Q 018652 180 GLNSSVGGIQVDGQFRT----RMPGIFAIGDVA 208 (352)
Q Consensus 180 gl~~~~g~i~vd~~~~t----~~~~Iya~GD~a 208 (352)
|++.=+|.+.=...++. ..++|-.+|-..
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 33221344432233332 245687877543
No 166
>PRK09897 hypothetical protein; Provisional
Probab=98.13 E-value=0.00025 Score=69.86 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=54.2
Q ss_pred cCCceEEEECCCc--EEEeCC-CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652 3 YQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG 79 (352)
Q Consensus 3 ~~~~V~~id~~~~--~V~~~~-g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg 79 (352)
.+++|++|+..+. .|++++ +..+.+|+||+|||..+...+ .+ .+ .++.+..+.. ..... .+.+|+|+|.
T Consensus 128 ~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~Gt 199 (534)
T PRK09897 128 ESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGT 199 (534)
T ss_pred ECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECC
Confidence 4678999987654 455544 467999999999997642211 11 11 1222223221 12223 3789999999
Q ss_pred ChHHHHHHHHHHhC
Q 018652 80 GYIGMEVAAAAVGW 93 (352)
Q Consensus 80 G~~g~e~A~~l~~~ 93 (352)
|.++++++..|...
T Consensus 200 GLt~iD~v~~Lt~~ 213 (534)
T PRK09897 200 SLSGLDAAMAVAIQ 213 (534)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998765
No 167
>PRK07190 hypothetical protein; Provisional
Probab=98.11 E-value=4.2e-05 Score=74.90 Aligned_cols=98 Identities=19% Similarity=0.337 Sum_probs=73.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------ccc-
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QRL- 110 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------------------------------------~~~- 110 (352)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+. ...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999999999999763210 000
Q ss_pred ---------c-----------C-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 111 ---------F-----------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 111 ---------~-----------~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
+ + ..+...+.+.+++.|++++.++++++++.++++. .+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence 0 0 0122345556678899999999999998654442 345577888999999999998
Q ss_pred CC
Q 018652 170 KP 171 (352)
Q Consensus 170 ~p 171 (352)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 65
No 168
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.11 E-value=3.1e-05 Score=74.98 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=64.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------ccC--------------HHH-----------HHHHH
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFT--------------PSL-----------AQRYE 120 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------~~~--------------~~~-----------~~~l~ 120 (352)
..++|||+|+.|+.+|..++++|.+|+++++++.++.. +.+ +.+ .....
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY 83 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999987532110 011 011 11122
Q ss_pred HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCCch
Q 018652 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~ 174 (352)
+.+.+.||+++.+.. ..++ +.. ..+...+ ..++.+|.||+|||.+|+..
T Consensus 84 ~~~~~~gV~~~~g~~-~~~~---~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 84 AMLAGSGVDLYDAEA-HFVS---NKV-IEVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred HHHHhCCCEEEEEEE-EEcc---CCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 456778899987652 2221 222 2233222 24699999999999998744
No 169
>PLN02697 lycopene epsilon cyclase
Probab=98.10 E-value=4.1e-05 Score=75.30 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=71.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------------------------------ 109 (352)
..|+|||+|+.|+.+|..|++.|.+|.++++...+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 47999999999999999999999999999864211000
Q ss_pred ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 110 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 110 ~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.....+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 000122344555667789998 56789998754333 3334567888999999999999876
No 170
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.10 E-value=7.2e-05 Score=63.63 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=98.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------cc---------------------------cC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FT 112 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------~~---------------------------~~ 112 (352)
....|+|+|+|++|+.+|.+|++.|.+|.+++++..+-. .. -+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 356799999999999999999999999999998833211 00 01
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCch-hh-hhc
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV 179 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~ 179 (352)
..+...+....-+.|.++..+..+..+--.++.++..+... |--.+++++||-+||.....- ++ +..
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 22233333444567889998888888754333355555442 234789999999999987532 22 111
Q ss_pred ---CCccc-CCc--------EEeCCCCCCCCCCEEEecccccc--CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 180 ---GLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAAF--PLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 180 ---gl~~~-~g~--------i~vd~~~~t~~~~Iya~GD~a~~--~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
+.+.. .+. ..|+.+. --.||+|++|=.+.- ..+..|. .+..-...|+.+|+.++.
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~av~G~pRMGP-----iFGgMllSGkkaAe~i~e 257 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVNAVHGLPRMGP-----IFGGMLLSGKKAAEEILE 257 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHHhhcCCcccCc-----hhhhhhhchHHHHHHHHH
Confidence 22211 011 1122211 247999999977652 2222222 222223567778777663
No 171
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=3.8e-05 Score=75.04 Aligned_cols=97 Identities=26% Similarity=0.316 Sum_probs=65.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCH-------------------------------H
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------------------------------S 114 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~-------------------------------~ 114 (352)
...++|||+|+.|+.+|..++++|.+|+++++.+.+-..+ .+. .
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK 83 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 3579999999999999999999999999999764331100 100 1
Q ss_pred HH-----------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652 115 LA-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT 172 (352)
Q Consensus 115 ~~-----------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 172 (352)
+. ..+...+++.||+++.+. ...++ .+...|...+| +++.+|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~----~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG----GNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 10 112234567799999764 22222 22234555566 47999999999999985
No 172
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.09 E-value=4.3e-05 Score=72.59 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=71.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc--cc---c---c--ccCH----------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP---------------------------- 113 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~--~~---~---~--~~~~---------------------------- 113 (352)
.+|+|||||+.|+-+|..|++.|.+|+++++.+. .. + + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652 114 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165 (352)
Q Consensus 114 ---------------------------~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 165 (352)
.+...+.+.+.+ .|++++.++++++++.++++ ..+.+++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 000112222233 36999999999999865443 357888999999999999
Q ss_pred ccCCCCCch
Q 018652 166 GIGAKPTVS 174 (352)
Q Consensus 166 a~G~~p~~~ 174 (352)
|.|......
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999987643
No 173
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.09 E-value=4.6e-05 Score=72.55 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------------------------------cc-------c--
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------LQ-------R-- 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------------------------~~-------~-- 109 (352)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.. .. +
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 357999999999999999999999999999875310 00 0
Q ss_pred ---c------c---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 110 ---L------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 110 ---~------~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
. + ...+.+.+.+.+.+. |++++.+++++++...+++ ..+.+++|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 0 011223344445555 9999999999999754332 35777888899999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
.|.|....
T Consensus 163 ~AdG~~S~ 170 (391)
T PRK08020 163 GADGANSQ 170 (391)
T ss_pred EeCCCCch
Confidence 99998775
No 174
>PRK06753 hypothetical protein; Provisional
Probab=98.08 E-value=3.3e-05 Score=73.01 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=69.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----ccCHHH---------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPSL--------------------------------- 115 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----~~~~~~--------------------------------- 115 (352)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999977432100 000000
Q ss_pred ---------------HHHHHHHHHhC--CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 116 ---------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 116 ---------------~~~l~~~l~~~--gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
...+.+.|.+. +.++++++++++++.+ ++. ..+.+++|+++.+|+||.|.|....+
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence 01223333322 4578899999999854 333 35778899999999999999977643
No 175
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.08 E-value=1.1e-05 Score=81.72 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------ccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +..+++.+.....+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47899999999999999999999999999999887542 1124566666667788999999999986521
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+.+ ....+|.|++++|..+.
T Consensus 386 -------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 112222 13468999999998653
No 176
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.07 E-value=4.5e-05 Score=73.01 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc--------------------c------ccc-------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------------L------QRL------------- 110 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~--------------------~------~~~------------- 110 (352)
..+|+|||||+.|+-+|..|++.|.+|+++++. +.. + ...
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999974 100 0 000
Q ss_pred ----------cC---------------HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652 111 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164 (352)
Q Consensus 111 ----------~~---------------~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 164 (352)
++ ..+...+.+.+.+ .|++++.++++++++.++++ ..+.+++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 00 0112233333444 37999999999999754333 36778899999999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
.|.|....
T Consensus 162 gADG~~S~ 169 (405)
T PRK08850 162 GADGANSW 169 (405)
T ss_pred EeCCCCCh
Confidence 99997654
No 177
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.07 E-value=1.4e-05 Score=78.14 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=67.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+.+.||++++++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 3579999999999999999999999999999987654211 13445556666778999999999876521 1
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
+.. +.....+|.||+|+|..+
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111357999999999973
No 178
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.06 E-value=6e-05 Score=75.11 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=73.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------cc------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL------ 110 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------~~------ 110 (352)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. ..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 45799999999999999999999999999997732100 00
Q ss_pred -------------------c-CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccC
Q 018652 111 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG 168 (352)
Q Consensus 111 -------------------~-~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G 168 (352)
+ ...+.+.+.+.+.+. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223445555554 799999999999986544433334445564 699999999999
Q ss_pred CCCCc
Q 018652 169 AKPTV 173 (352)
Q Consensus 169 ~~p~~ 173 (352)
.....
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87653
No 179
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.06 E-value=5.6e-05 Score=75.11 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 108 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------ 108 (352)
..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 46799999999999999999999999999997732100
Q ss_pred ---cc---------c-------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcC--CC--CEEEcCEEE
Q 018652 109 ---RL---------F-------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV 164 (352)
Q Consensus 109 ---~~---------~-------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~vi 164 (352)
.. + -+.+.+.+.+.+.+. |++++.++++++++.++++. .+.++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 00 0 012223444555553 89999999999998665543 34443 56 479999999
Q ss_pred EccCCCCCc
Q 018652 165 IGIGAKPTV 173 (352)
Q Consensus 165 ~a~G~~p~~ 173 (352)
-|.|.....
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999987643
No 180
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.06 E-value=5.6e-05 Score=71.85 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=70.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------c------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------ 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------~------------------ 109 (352)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 489999999999999999999999999997642210 0
Q ss_pred -ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 110 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 110 -~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.-...+.+.+.+.+.+.|++++ ...+..+... ++....+.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0001233445555677789886 4578888654 2333467778888899999999999876
No 181
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.03 E-value=7.3e-05 Score=71.27 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=42.1
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 181 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 181 (352)
+.+.+++.|++++.++.+.+++..+ +.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 3444567899999999999987543 333 5666666 6999999999998754 44444443
No 182
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.03 E-value=4.9e-05 Score=75.22 Aligned_cols=96 Identities=24% Similarity=0.368 Sum_probs=69.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC-cccc-------------------ccc--------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------RLF-------------------- 111 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~-------------------~~~-------------------- 111 (352)
-.|+|||||..|+++|..+++.|.+|.++++.. .+.. ..+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 469999999999999999999999999998762 1100 000
Q ss_pred -------------CH-HHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 112 -------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 112 -------------~~-~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
+. .+...+.+.+++. |++++ ...+.++..+ ++.+..|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 1123344445544 78886 4567777643 56777889999999999999999994
No 183
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.01 E-value=6.9e-05 Score=70.94 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=70.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCC----cc----------------cc-----------------------c
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQ-----------------------R 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~----~~----------------~~-----------------------~ 109 (352)
+|+|||||+.|+-+|..|++.|.+|+|+++.+ .+ +. .
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 10 00 0
Q ss_pred ------------------ccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 110 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 110 ------------------~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
..-+.+.+.+.+.+.+. +++++.+++++++...+++ ..+.+.++ ++.+|+||.|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 00112334445555555 4899999999998755433 24677766 89999999999987
Q ss_pred CCc
Q 018652 171 PTV 173 (352)
Q Consensus 171 p~~ 173 (352)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 654
No 184
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.01 E-value=9.9e-05 Score=70.56 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=69.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------- 108 (352)
++|+|||||..|+-+|..|++.|.+|+++++.+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 7899999999999999999999999999997632100
Q ss_pred ccc------------C--------HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc---CCCCEEEcCEEE
Q 018652 109 RLF------------T--------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 164 (352)
Q Consensus 109 ~~~------------~--------~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi 164 (352)
..+ + ..+.+.+.+.+.+ .++++++++++++++..+++ + .+++ .+++++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence 000 0 1222334444444 37999999999999754333 2 3333 344679999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
-|-|....
T Consensus 161 gADG~~S~ 168 (400)
T PRK06475 161 ACDGVWSM 168 (400)
T ss_pred ECCCccHh
Confidence 99998754
No 185
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.99 E-value=2e-05 Score=79.88 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 45799999999999999999999999999999876541 11 1345566666777889999999887541 1
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+.+. ...+|.||+|+|..+.
T Consensus 269 -------dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -------DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 1122222 2359999999998753
No 186
>PRK06185 hypothetical protein; Provisional
Probab=97.99 E-value=0.00011 Score=70.36 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------------c--------------c-
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q--------------R- 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------~--------------~- 109 (352)
..+|+|||||++|+-+|..|++.|.+|+++++.+.+. . .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 4579999999999999999999999999999752110 0 0
Q ss_pred ---c----------------cCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEE--EcCCCC-EEEcCEEEEc
Q 018652 110 ---L----------------FTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG 166 (352)
Q Consensus 110 ---~----------------~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v--~~~~g~-~i~~D~vi~a 166 (352)
. ....+.+.+.+.+.+ .|++++.+++++++..+ ++.+..+ ...+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 001222334444444 48999999999999755 3444333 345664 7999999999
Q ss_pred cCCCCC
Q 018652 167 IGAKPT 172 (352)
Q Consensus 167 ~G~~p~ 172 (352)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 998753
No 187
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=6.7e-05 Score=73.13 Aligned_cols=95 Identities=26% Similarity=0.376 Sum_probs=65.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----ccc------------------------------C-HHH
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RLF------------------------------T-PSL 115 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----~~~------------------------------~-~~~ 115 (352)
-+++|||+|+.|+.+|..++++|.+|.++++.. +-. .+. + .++
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 479999999999999999999999999999763 100 000 0 111
Q ss_pred HHH-----------HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCC
Q 018652 116 AQR-----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 116 ~~~-----------l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~ 172 (352)
.++ +...+++.||+++.++ ++.++. ....+...+ ++++.+|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVDP----NTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 112 4445677899999874 344431 222444333 467999999999999986
No 188
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.98 E-value=8.9e-05 Score=70.49 Aligned_cols=99 Identities=24% Similarity=0.335 Sum_probs=70.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c-
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R- 109 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------------~- 109 (352)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 35799999999999999999999999999997632100 0
Q ss_pred ------cc---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652 110 ------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167 (352)
Q Consensus 110 ------~~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 167 (352)
.+ ...+.+.+.+.+.+. ++. +.++++.+++..+++ + .+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEec
Confidence 00 011233444555555 466 778999999754333 3 5778888899999999999
Q ss_pred CCCCC
Q 018652 168 GAKPT 172 (352)
Q Consensus 168 G~~p~ 172 (352)
|....
T Consensus 164 G~~S~ 168 (388)
T PRK07494 164 GRNSP 168 (388)
T ss_pred CCCch
Confidence 98764
No 189
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.98 E-value=6.1e-05 Score=73.12 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=65.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----c-------------------------------cC-H-
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----L-------------------------------FT-P- 113 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~-------------------------------~~-~- 113 (352)
..++|||+|+.|+.+|..++++|.+|+++++.. +-.. + ++ +
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 469999999999999999999999999999752 1000 0 00 0
Q ss_pred ----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 114 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 114 ----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
.+.+.+...+++.||+++.++.. +. ++. .|.. +++.+.+|.+|+|||.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~---~v~v-~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDG---TVEV-NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 11223455677889999988642 22 122 2333 566799999999999998644
No 190
>PRK06370 mercuric reductase; Validated
Probab=97.98 E-value=5e-05 Score=74.08 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=64.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----cc-----------------------------C---H
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF-----------------------------T---P 113 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~-----------------------------~---~ 113 (352)
...++|||+|+.|+.+|..++++|.+|+++++.. +... +. . +
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 3579999999999999999999999999999752 1000 00 0 0
Q ss_pred HH-----------HHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 114 SL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 114 ~~-----------~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
.+ ...+...+++. ||+++.++.+ .++ .. .+.. +++++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~~---~~---~v~v-~~~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FES---PN---TVRV-GGETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ecc---CC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence 01 12334556666 9999987643 111 22 2333 456799999999999998754
No 191
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.97 E-value=2.2e-05 Score=79.85 Aligned_cols=91 Identities=20% Similarity=0.325 Sum_probs=66.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.|+++++++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 468999999999999999999999999999998765321 113455555566778889999999886521
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.+.+.+. ...+|.|++++|..+
T Consensus 403 -------~i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 -------DISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred -------cCCHHHH-HhcCCEEEEeCCCCC
Confidence 0111111 246999999999854
No 192
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.96 E-value=0.00036 Score=66.26 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=99.4
Q ss_pred ECCChHHHHHHHHHH-hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC
Q 018652 77 VGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 155 (352)
Q Consensus 77 vGgG~~g~e~A~~l~-~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g 155 (352)
+|-+.. .++-..|. ..|..|.-+-. +-|...+..+.+.+.+.+++.|++++.++.|.++... ++.+..+.+.++
T Consensus 230 lG~~~~-~~~~~~L~~~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g 304 (419)
T TIGR03378 230 FGLGDG-LELLRELEQATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNH 304 (419)
T ss_pred eCCCCh-HHHHHHHHHHHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCC
Confidence 354432 23334443 34666665432 2234466788889999999999999999999998754 455666776666
Q ss_pred --CEEEcCEEEEccCCC-CCchhhhhc--------CCcc--------------------cCCcEEeCCCCCC-----CCC
Q 018652 156 --STIDADTIVIGIGAK-PTVSPFERV--------GLNS--------------------SVGGIQVDGQFRT-----RMP 199 (352)
Q Consensus 156 --~~i~~D~vi~a~G~~-p~~~~~~~~--------gl~~--------------------~~g~i~vd~~~~t-----~~~ 199 (352)
..+.+|.+|+|+|.- .. .++++. +++. ..-||.+|++||. ..+
T Consensus 305 ~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~ 383 (419)
T TIGR03378 305 RDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE 383 (419)
T ss_pred ccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence 479999999999987 33 333221 2221 1126889999983 379
Q ss_pred CEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652 200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238 (352)
Q Consensus 200 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 238 (352)
|+||+|-+....++..-.. --..|+..|-.||++|
T Consensus 384 Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 384 NLYAIGAVLGGYDPIFEGC----GSGVAVSTALHAAEQI 418 (419)
T ss_pred cceEechhhcCCChHhcCC----CchhHHHHHHHHHHhh
Confidence 9999999988776532110 1113677777777766
No 193
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=0.00011 Score=70.05 Aligned_cols=106 Identities=28% Similarity=0.391 Sum_probs=73.7
Q ss_pred CeEEEECCChHHHHHHHHHHhC---CCcEEEEecCC-c-------------c-------------cc-------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------------LQ------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~-~-------------~-------------~~------------- 108 (352)
.+|+|||+|+.|+-+|..|++. |.+|+|+++.. . + +.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 99999999831 0 0 00
Q ss_pred ---c------cc---------------CHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652 109 ---R------LF---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163 (352)
Q Consensus 109 ---~------~~---------------~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 163 (352)
. .+ -..+.+.+.+.+.+ .|++++.+++++++...++ . ..+.+.+|+++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-S-VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-e-EEEEECCCCEEEeCEE
Confidence 0 00 00112334444444 4799999999999975433 2 2577788888999999
Q ss_pred EEccCCCCCchhhhhcCC
Q 018652 164 VIGIGAKPTVSPFERVGL 181 (352)
Q Consensus 164 i~a~G~~p~~~~~~~~gl 181 (352)
|.|.|.... +.+.+++
T Consensus 162 I~AdG~~S~--vr~~~~~ 177 (395)
T PRK05732 162 VAADGSHSA--LREALGI 177 (395)
T ss_pred EEecCCChh--hHHhhCC
Confidence 999998764 3344443
No 194
>PRK10015 oxidoreductase; Provisional
Probab=97.96 E-value=0.00012 Score=70.54 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=71.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc------------------cccc-----------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL----------------------- 110 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~------------------~~~~----------------------- 110 (352)
..|+|||||+.|+-+|..|++.|.+|.++++.+.+ .+..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 47999999999999999999999999999976321 0000
Q ss_pred --c------------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 111 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 111 --~------------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
+ -..+..++.+..++.|++++.++.|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 0112234566677889999999999998754 345544543 44579999999999975
Q ss_pred C
Q 018652 171 P 171 (352)
Q Consensus 171 p 171 (352)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 195
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=0.00021 Score=68.65 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=87.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------cc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR 109 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------------------------------------~~ 109 (352)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+. ++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 36889999999999999999999999999999883320 11
Q ss_pred c-cCH-HHHHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCC----CEEEcCEEEEccCCC--CCchhhhhc
Q 018652 110 L-FTP-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV 179 (352)
Q Consensus 110 ~-~~~-~~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~~~~~ 179 (352)
. .+. ++-++|+...+..++ .+.+++.+.+++...++. ..|.+.+. ++.-+|.|++|+|.- |+.+.....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 111 556677777777775 567788788887553333 34554443 356799999999986 655444332
Q ss_pred CCcccCCcEEeCCCCCC----CCCCEEEecc
Q 018652 180 GLNSSVGGIQVDGQFRT----RMPGIFAIGD 206 (352)
Q Consensus 180 gl~~~~g~i~vd~~~~t----~~~~Iya~GD 206 (352)
+++.=.|.+.=.-..+. ....|..+|-
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~ 194 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGC 194 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECC
Confidence 22221233332212221 2366778874
No 196
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=8.2e-05 Score=72.57 Aligned_cols=96 Identities=34% Similarity=0.496 Sum_probs=63.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCHH-----------------------------HH-
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS-----------------------------LA- 116 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~~-----------------------------~~- 116 (352)
..++|||+|+.|+.+|..+++.|.+|+++++...+-..+ .+.. +.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 469999999999999999999999999999642221100 0000 00
Q ss_pred -------------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCC
Q 018652 117 -------------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT 172 (352)
Q Consensus 117 -------------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~ 172 (352)
..+...+++.+|+++.+. .++.. +.+ ..+...+|+ ++++|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGK-VVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCE-EEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 112233455677777654 34432 222 245556664 6999999999999985
No 197
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.95 E-value=0.00011 Score=72.63 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=71.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------------cc-------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------------~~------------------------- 109 (352)
.|+|||+|..|+++|..+++.|.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 58999999999999999999999999998652110 00
Q ss_pred ----------ccCH-HHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 110 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 110 ----------~~~~-~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.+++ .+...+.+.+++. ++.++.+ .++.+...+++.+..|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0000 1123455556666 7888755 5666654335677889999999999999999999874
No 198
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.95 E-value=0.00014 Score=69.50 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=79.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------c------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------R------------------------ 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------~------------------------ 109 (352)
..|+|||+|+.|.-+|..|++.|.+|.++++.+.+-. .
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 4699999999999999999999999999998632200 0
Q ss_pred -------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652 110 -------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 181 (352)
Q Consensus 110 -------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 181 (352)
.+ -..+.+++.+..++.|.+++.++.+..+..++++.+..+ ..++.++.++.||.|.|.... +.+.+++
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~ 160 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGL 160 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCC
Confidence 00 123445677788889999999999999987655554433 344478999999999997653 3444444
Q ss_pred c
Q 018652 182 N 182 (352)
Q Consensus 182 ~ 182 (352)
.
T Consensus 161 ~ 161 (396)
T COG0644 161 K 161 (396)
T ss_pred C
Confidence 3
No 199
>PLN02661 Putative thiazole synthesis
Probab=97.93 E-value=0.00034 Score=64.72 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=95.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc----------cc----------------cC-----------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT----------- 112 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~----------~~----------------~~----------- 112 (352)
...|+|||+|..|+-+|..|++. |.+|+++++...+-. .. ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 45899999999999999999975 899999998643210 00 00
Q ss_pred HHHHHHHH-HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc------CC--C------CEEEcCEEEEccCCCCCch---
Q 018652 113 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------ED--G------STIDADTIVIGIGAKPTVS--- 174 (352)
Q Consensus 113 ~~~~~~l~-~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~------~~--g------~~i~~D~vi~a~G~~p~~~--- 174 (352)
..+...+. +.+++.||+++.++.+.++... ++++.++.+ .+ + ..+.++.||+|||..+...
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 11112233 3444578999999999888754 456666553 11 1 2689999999999765321
Q ss_pred --hhhhcCCccc-C--CcEEeCC--CC---CC--CCCCEEEeccccccC--CccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 175 --PFERVGLNSS-V--GGIQVDG--QF---RT--RMPGIFAIGDVAAFP--LKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 175 --~~~~~gl~~~-~--g~i~vd~--~~---~t--~~~~Iya~GD~a~~~--~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.+.+.++... . ....++. .+ .| -+|++|++|=.+.-. .+..|. .+..-...|+.+|+.++.
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp-----~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGP-----TFGAMMISGQKAAHLALK 325 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCc-----hhHhHHhhhHHHHHHHHH
Confidence 1112222110 0 0111111 00 12 379999999776522 222222 222223567888877764
No 200
>PRK09897 hypothetical protein; Provisional
Probab=97.93 E-value=0.00017 Score=71.09 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=66.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc-----------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----------------------------------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~----------------------------------------- 108 (352)
++|+|||+|+.|+-+|..|.+.+ .+|+|++++..+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 57999999999999999998765 47999998632210
Q ss_pred -----------------cc-cCHHHHHHH---HHHHHhCC--cEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEE
Q 018652 109 -----------------RL-FTPSLAQRY---EQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV 164 (352)
Q Consensus 109 -----------------~~-~~~~~~~~l---~~~l~~~g--V~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi 164 (352)
+. ++.-+...+ .+.+.+.| +.++.+++|+.++..+++ ..+.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 00 010111122 22234455 788888899999865433 3466655 4679999999
Q ss_pred EccCCCCC
Q 018652 165 IGIGAKPT 172 (352)
Q Consensus 165 ~a~G~~p~ 172 (352)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99998543
No 201
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.00078 Score=65.17 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=89.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCCccc-------------------------c----cccC--HHHHH
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ 117 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~-------------------------~----~~~~--~~~~~ 117 (352)
...+|+|||+|++|+-+|..|.+.|.. +.+++++..+- + ..+. +.+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 346799999999999999999999998 99999874220 0 0111 12567
Q ss_pred HHHHHHHhCCcE--EEcCCeEEEEEecCCCcEEEEEcCCCCE--EEcCEEEEccCC--CCCchhhhhcCCcccCCcEEeC
Q 018652 118 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA--KPTVSPFERVGLNSSVGGIQVD 191 (352)
Q Consensus 118 ~l~~~l~~~gV~--~~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~--~p~~~~~~~~gl~~~~g~i~vd 191 (352)
++...+++.++. +..++.|+.+..++++....|.+++|.. +.+|.||+|||. .|+.+-+. |++.-.|.+.=.
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~~HS 164 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceEEch
Confidence 788888887754 4456667667666667677888888865 459999999997 34433222 222222222211
Q ss_pred C----CCCCCCCCEEEeccccc
Q 018652 192 G----QFRTRMPGIFAIGDVAA 209 (352)
Q Consensus 192 ~----~~~t~~~~Iya~GD~a~ 209 (352)
. ...-.-++|-++|--++
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred hcCCCccccCCCeEEEECCCcc
Confidence 1 11224467888885443
No 202
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.91 E-value=7e-05 Score=70.75 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=63.8
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc--------cccCHHHHH-------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--------RLFTPSLAQ------------------------- 117 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~--------~~~~~~~~~------------------------- 117 (352)
.|+|||+|..|+.+|..|++. |.+|.++++.+.+.+ ..+++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 479999999999999999987 999999998753221 001111111
Q ss_pred ---------HHHHH-HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 118 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 118 ---------~l~~~-l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+.+. +++.+..++++.+|.+++. + .+.+.+|+++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2222344667888888852 2 355588999999999999998764
No 203
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.90 E-value=0.00016 Score=76.79 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhC-CcEEEcCCeEEEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL 139 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i 139 (352)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+..... ..+....+.+.+++. ++++++++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 35799999999999999999999999999998754422111 123333455556656 5999999998887
Q ss_pred EecCCCcEEEEE-c--------CC---C--CEEEcCEEEEccCCCCCc
Q 018652 140 EAGSDGRVAAVK-L--------ED---G--STIDADTIVIGIGAKPTV 173 (352)
Q Consensus 140 ~~~~~~~~~~v~-~--------~~---g--~~i~~D~vi~a~G~~p~~ 173 (352)
.. ++.+..+. . .. + .++.+|.||+|||..|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22221111 0 00 1 158999999999998764
No 204
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.90 E-value=0.00017 Score=68.19 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=40.6
Q ss_pred HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180 (352)
Q Consensus 118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 180 (352)
.+.+.+++.|++++.+++|.+++.. ++.+ .|.+.++ ++.+|.||+|+|.... .+++.++
T Consensus 150 ~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g 208 (380)
T TIGR01377 150 ALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG 208 (380)
T ss_pred HHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence 3344456689999999999999854 3333 4666665 6999999999997533 3444444
No 205
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.89 E-value=0.00013 Score=69.76 Aligned_cols=94 Identities=17% Similarity=0.370 Sum_probs=68.4
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEecCCccccc---------------------------------------------
Q 018652 75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------------------------------- 109 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------------------------------------- 109 (352)
+|||+|..|+-+|..+++.|.+|+++++.+.+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999976432100
Q ss_pred ----------------cc-----CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 110 ----------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 110 ----------------~~-----~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
.+ ...+.+.+.+.+++.|+++++++.++++...+ + ...+.+ +++++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCEEEECCC
Confidence 00 01233445566677899999999999997542 3 234555 466799999999999
Q ss_pred CCC
Q 018652 169 AKP 171 (352)
Q Consensus 169 ~~p 171 (352)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 753
No 206
>PRK06126 hypothetical protein; Provisional
Probab=97.88 E-value=0.00018 Score=71.67 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=69.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------------------------c------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------Q------------ 108 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------------------------~------------ 108 (352)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. +
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4679999999999999999999999999999762110 0
Q ss_pred -------cc-c--------------------------C-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652 109 -------RL-F--------------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 152 (352)
Q Consensus 109 -------~~-~--------------------------~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~ 152 (352)
+. + + ..+...+.+.+++ .++++++++++++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 00 0 0 0122233444444 489999999999998654432222221
Q ss_pred -CCCC--EEEcCEEEEccCCCCC
Q 018652 153 -EDGS--TIDADTIVIGIGAKPT 172 (352)
Q Consensus 153 -~~g~--~i~~D~vi~a~G~~p~ 172 (352)
.+|+ ++.+|+||.|.|....
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchH
Confidence 3454 6899999999998764
No 207
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.88 E-value=0.00012 Score=71.37 Aligned_cols=94 Identities=20% Similarity=0.397 Sum_probs=63.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------------------------------C------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------------------------------T------ 112 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------------------------------~------ 112 (352)
.++|||+|+.|+.+|..++++|.+|+++++.+ +...++ +
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 58999999999999999999999999999752 111000 0
Q ss_pred --HHHHH-----HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCch
Q 018652 113 --PSLAQ-----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 113 --~~~~~-----~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 174 (352)
.++.. .+.+.+++.||+++.+. +..++ .+ .|.+.+|+ .+.+|.+|+|||.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~----~~--~v~v~~g~~~~~~~~lIiATGs~p~~p 143 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD----PK--TVKVDLGREVRGAKRFLIATGARPAIP 143 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc----CC--EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence 01111 13355677899998764 22222 22 45555654 689999999999998744
No 208
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.88 E-value=7e-05 Score=70.58 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=76.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGASIKN 138 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~---------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~ 138 (352)
..++++|+|+|+.|.-++..++..| -+++++.++..+.. ............+.+++.||++++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 3578999999999988888898887 46777765532210 012334555566789999999999999999
Q ss_pred EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
++-.+ ..+.+.+|+.+++|.+++|||..|.+
T Consensus 153 ~D~~~----K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 153 ADLAS----KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred eeccc----cEEEeCCCceeecceEEEeecCcccc
Confidence 97432 26788999999999999999997654
No 209
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.86 E-value=1.2e-05 Score=77.39 Aligned_cols=107 Identities=25% Similarity=0.346 Sum_probs=27.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------c--------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R-------------- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------------------~-------------- 109 (352)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+-. +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 489999999999999999999999999998843200 0
Q ss_pred -----ccCH-HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CCEEEcCEEEEccCCCCCchhhhhcC
Q 018652 110 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG 180 (352)
Q Consensus 110 -----~~~~-~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~~i~~D~vi~a~G~~p~~~~~~~~g 180 (352)
.+++ .....+.+.+++.|+++++++.+.++..+ ++++..|.+.+ ..++.++.+|-|||. . +++..+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g--~l~~~aG 156 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD-G--DLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-c--ccccccc
Confidence 1111 12234566777889999999999999864 56777787765 457999999999994 2 4444555
Q ss_pred Ccc
Q 018652 181 LNS 183 (352)
Q Consensus 181 l~~ 183 (352)
.+.
T Consensus 157 ~~~ 159 (428)
T PF12831_consen 157 APY 159 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 210
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.85 E-value=0.00021 Score=69.20 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=72.6
Q ss_pred eEEEECCChHHHHHHHHHHh----CCCcEEEEecCC--ccc--------------------------------cc-----
Q 018652 73 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR----- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~----~g~~Vtvv~~~~--~~~--------------------------------~~----- 109 (352)
.|+|||||+.|+-+|..|++ .|.+|+|+++.+ ... ..
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999721 100 00
Q ss_pred ------------------cc--------------CHHHHHHHHHHHHhCC---cEEEcCCeEEEEEec-----CCCcEEE
Q 018652 110 ------------------LF--------------TPSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA 149 (352)
Q Consensus 110 ------------------~~--------------~~~~~~~l~~~l~~~g---V~~~~~~~v~~i~~~-----~~~~~~~ 149 (352)
.+ ...+...+.+.+.+.+ ++++.++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 00 0112333455556654 999999999999632 1223346
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCc
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
+.+.+|+++.+|+||-|-|.....
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChh
Confidence 788999999999999999987754
No 211
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.84 E-value=0.0002 Score=68.75 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=67.9
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccc----cCHH---------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS--------------------------------- 114 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~----~~~~--------------------------------- 114 (352)
+|+|||||..|+-+|..|++.| .+|+|+++.+.+.... +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999874321000 0000
Q ss_pred --------------------H-HHHHHHHHHhC--CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 115 --------------------L-AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 115 --------------------~-~~~l~~~l~~~--gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
+ ...+.+.|.+. +..++.++++++++..+++ ..+.+.+|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0 01122222221 4567889999999865433 367788999999999999999765
Q ss_pred C
Q 018652 172 T 172 (352)
Q Consensus 172 ~ 172 (352)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 3
No 212
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00016 Score=65.14 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=72.8
Q ss_pred cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE--EEcCEEEEccCCCCCchhhh----------h
Q 018652 111 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE----------R 178 (352)
Q Consensus 111 ~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~----------~ 178 (352)
++-.+.+.+...+++.|.-+..+.+|...+- .+++++.|.+.+... +.+|..|+|+|.--...+.. +
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 3445677888889999999999999998873 477888898888764 56999999999643322211 1
Q ss_pred cCCcc------------------cCCcEEeCCCCCCC-----CCCEEEeccccccCCcc
Q 018652 179 VGLNS------------------SVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM 214 (352)
Q Consensus 179 ~gl~~------------------~~g~i~vd~~~~t~-----~~~Iya~GD~a~~~~~~ 214 (352)
+.+.. ..=++.+|+++|.+ ..|+||+|.+.+..++.
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 11110 01267888888853 57899999999876653
No 213
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.83 E-value=0.00031 Score=66.98 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=71.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--c-----------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----------------------------------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--~----------------------------------------- 108 (352)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+... .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999774210 0
Q ss_pred --c-cc-------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCC
Q 018652 109 --R-LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA 169 (352)
Q Consensus 109 --~-~~-------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~ 169 (352)
. .+ -+.+.+.+.+...+.|+++++++++++++..++.. ..|.+ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence 0 00 01222334444466799999999999987522222 24555 4664 6899999999998
Q ss_pred CCCc
Q 018652 170 KPTV 173 (352)
Q Consensus 170 ~p~~ 173 (352)
....
T Consensus 162 ~S~v 165 (392)
T PRK08243 162 HGVS 165 (392)
T ss_pred CCch
Confidence 7653
No 214
>PRK13748 putative mercuric reductase; Provisional
Probab=97.83 E-value=0.00027 Score=70.66 Aligned_cols=98 Identities=28% Similarity=0.400 Sum_probs=64.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------------------------cc--cc---C-----HH
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------QR--LF---T-----PS 114 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------------------------~~--~~---~-----~~ 114 (352)
..++|||+|+.|+.+|..+++.|.+|.+++++. +- +. .+ . ..
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 177 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR 177 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence 589999999999999999999999999999762 10 00 00 0 01
Q ss_pred HHHH------------HHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchh
Q 018652 115 LAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 175 (352)
Q Consensus 115 ~~~~------------l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~ 175 (352)
+.++ ....+++. +|+++.+. +..++ . ....|.+.+|+ ++.+|.||+|||.+|....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~-~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~ 248 (561)
T PRK13748 178 LLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFKD---D-QTLIVRLNDGGERVVAFDRCLIATGASPAVPP 248 (561)
T ss_pred HHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEec---C-CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC
Confidence 1111 11223444 78888763 44332 2 22355566664 6999999999999987543
No 215
>PRK06996 hypothetical protein; Provisional
Probab=97.83 E-value=0.00021 Score=68.23 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC----CcEEEEecCCcc------------------c--------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------L-------------------- 107 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g----~~Vtvv~~~~~~------------------~-------------------- 107 (352)
...+|+|||||+.|+-+|..|++.| .+|+++++.+.. +
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4568999999999999999999986 469999975210 0
Q ss_pred -cc------------------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEcCEEE
Q 018652 108 -QR------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 164 (352)
Q Consensus 108 -~~------------------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi 164 (352)
.. .. -..+.+.+.+.+.+.|++++.++++++++...++ ..+.+.++ +++.+|+||
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAV 167 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEE
Confidence 00 00 1244566777778889999999999999754443 24566654 589999999
Q ss_pred EccCCC
Q 018652 165 IGIGAK 170 (352)
Q Consensus 165 ~a~G~~ 170 (352)
-|.|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999964
No 216
>PLN02546 glutathione reductase
Probab=97.82 E-value=0.00013 Score=72.44 Aligned_cols=95 Identities=21% Similarity=0.390 Sum_probs=65.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEec----------CC--------------ccc------c---c--ccC----
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----------EN--------------HLL------Q---R--LFT---- 112 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~----------~~--------------~~~------~---~--~~~---- 112 (352)
-.++|||+|..|+.+|..++++|.+|.++++ +. .++ . . .++
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~ 159 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYE 159 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccC
Confidence 3699999999999999999999999999995 10 000 0 0 000
Q ss_pred ------------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 113 ------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 113 ------------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
..+...+.+.+++.||+++.+. .+.++.. .|.. +|+++.+|.||+|||.+|...
T Consensus 160 ~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~~------~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 160 TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDPH------TVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccCC------EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 0122345566788899999763 4444421 3333 577899999999999998654
No 217
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.81 E-value=0.00023 Score=67.43 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=70.0
Q ss_pred eEEEECCChHHHHHHHHH--HhCCCcEEEEecCCcc--cc----------------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ---------------------------------------- 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l--~~~g~~Vtvv~~~~~~--~~---------------------------------------- 108 (352)
.|+|||+|+.|+.+|..| .+.|.+|.++++.+.. -.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 379999999999999999 7889999999876332 00
Q ss_pred --cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 109 --RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 109 --~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
..-...+.+.+.+.+.+.++ ...+..|++|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 00112333455555564454 556788999986533 34678899999999999999996654
No 218
>PRK13984 putative oxidoreductase; Provisional
Probab=97.80 E-value=6.6e-05 Score=75.68 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++++|||+|+.|+.+|..|+++|.+|+++++.+.+.. ..++.++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 578899999999999999999999999999988764411 012344545556778899999999976631
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
+ +..++ ....+|.||+|+|..+
T Consensus 359 --~-----~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 --D-----IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence 0 11111 1357999999999763
No 219
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.79 E-value=0.00015 Score=67.36 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhC--CcEEEcCCeEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKGASIK 137 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~--gV~~~~~~~v~ 137 (352)
+.++|||+|+|+.|+.+...|-..-.+|++|.+++.++-..+ -+.+.+-+....+.. +++++ .....
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence 568999999999999999999888899999999876532111 234555555555444 56665 45667
Q ss_pred EEEecCCCcEE-EEEcCCC----CEEEcCEEEEccCCCCCc
Q 018652 138 NLEAGSDGRVA-AVKLEDG----STIDADTIVIGIGAKPTV 173 (352)
Q Consensus 138 ~i~~~~~~~~~-~v~~~~g----~~i~~D~vi~a~G~~p~~ 173 (352)
.++++ ...+. ...++++ -.+.+|.+|+|+|..|++
T Consensus 133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 77653 22221 2233444 368899999999999886
No 220
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.79 E-value=0.00038 Score=65.78 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=35.8
Q ss_pred HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+.+.|++++.++.++++...+ +. ..+.+.+| ++.+|.||+|+|....
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG-DG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC-Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 456789999999999998643 33 35677777 6999999999997543
No 221
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.78 E-value=3.8e-05 Score=73.14 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
+|+|||||..|+|+|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976654
No 222
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.77 E-value=0.00047 Score=65.99 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=40.0
Q ss_pred HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
.+.+.+.+.|++++.++.|++++..+++.+..+.+.+| .+.++.||+++|..
T Consensus 188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 35566688899999999999997543455556777777 59999998887754
No 223
>PRK14694 putative mercuric reductase; Provisional
Probab=97.76 E-value=0.00035 Score=68.26 Aligned_cols=100 Identities=24% Similarity=0.416 Sum_probs=66.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------cc--cccC-----H---
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------LQ--RLFT-----P--- 113 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------~~--~~~~-----~--- 113 (352)
.-.++|||+|+.|+.+|..|++.|.+|.++++.. + .+ ..+. .
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 4579999999999999999999999999999753 1 00 0000 0
Q ss_pred HHHHH------------HHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652 114 SLAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 114 ~~~~~------------l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~ 176 (352)
.+.+. ....+++. +|+++.+ .+..++. + ...|.+.+|+ ++++|.+|+|||.+|....+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~--~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i 157 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--R--TLTVTLNDGGEQTVHFDRAFIGTGARPAEPPV 157 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--C--EEEEEecCCCeEEEECCEEEEeCCCCCCCCCC
Confidence 11111 11223333 7888876 4666642 2 2356667763 79999999999999875433
No 224
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.75 E-value=0.00044 Score=68.19 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 108 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------ 108 (352)
...|+|||+|..|+-.|..+++.|.+|.|+++.+.+-.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 45799999999999999999999999999987532100
Q ss_pred -------------------------------------cc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652 109 -------------------------------------RL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 143 (352)
Q Consensus 109 -------------------------------------~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~ 143 (352)
+. .+..+...+.+.+++.|+++++++.++++..+
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~- 219 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK- 219 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence 00 00123345566667889999999999999753
Q ss_pred CCcEEEEEc--CCCC--EEEcCEEEEccC-CCCCchhhhh
Q 018652 144 DGRVAAVKL--EDGS--TIDADTIVIGIG-AKPTVSPFER 178 (352)
Q Consensus 144 ~~~~~~v~~--~~g~--~i~~D~vi~a~G-~~p~~~~~~~ 178 (352)
++++..+.. .+++ .+.++.||+|+| +.+|.+++++
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 566655554 3433 588999999998 6666555443
No 225
>PTZ00058 glutathione reductase; Provisional
Probab=97.75 E-value=0.00036 Score=69.31 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.++|||+|..|+.+|..+++.|.+|.+|++.
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 36999999999999999999999999999975
No 226
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.75 E-value=0.00041 Score=67.13 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCCC--EEEcCEEEEccCC-CCCchhhhh
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA-KPTVSPFER 178 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g~--~i~~D~vi~a~G~-~p~~~~~~~ 178 (352)
+...+.+.+++.|+++++++.++++..++++++..+.. .+++ .+.++.||+|+|. ..|.++++.
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 34455666778899999999999998655666665554 3443 4789999999994 555555443
No 227
>PRK07538 hypothetical protein; Provisional
Probab=97.75 E-value=0.00036 Score=67.01 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=66.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------cc-------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF------- 111 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------~~------- 111 (352)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.+. .+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 6999999999999999999999999999977421000 00
Q ss_pred -------------------CHHHHHHHHHHHHh-CC-cEEEcCCeEEEEEecCCCcEEEEEcCC-----CCEEEcCEEEE
Q 018652 112 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI 165 (352)
Q Consensus 112 -------------------~~~~~~~l~~~l~~-~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~ 165 (352)
-..+.+.+.+.+.+ .| +++++++++++++..+++.. +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00112223333333 35 57999999999986555533 33333 24899999999
Q ss_pred ccCCCCC
Q 018652 166 GIGAKPT 172 (352)
Q Consensus 166 a~G~~p~ 172 (352)
|-|....
T Consensus 160 ADG~~S~ 166 (413)
T PRK07538 160 ADGIHSA 166 (413)
T ss_pred CCCCCHH
Confidence 9998653
No 228
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.75 E-value=9.4e-05 Score=73.94 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=65.8
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeE-EEE
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL 139 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v-~~i 139 (352)
..+++|+|||+|++|+.+|..|+++|.+|+++++.+.+.. ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4678999999999999999999999999999997654321 1133444454455678899999988754 222
Q ss_pred EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
... . + ...+|.|++++|..+.
T Consensus 215 ~~~------~--~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE------Q--L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH------H--H----HhhCCEEEEeeCCCCC
Confidence 110 0 1 1248999999998753
No 229
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.74 E-value=0.00029 Score=68.67 Aligned_cols=95 Identities=29% Similarity=0.425 Sum_probs=61.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCH-------HH-------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------SL------------------------- 115 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~-------~~------------------------- 115 (352)
.++|||+|+.|+.+|..|++.|.+|+++++ +.+-..+ .+. ..
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ 81 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence 689999999999999999999999999997 3331100 000 00
Q ss_pred ----------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCCc
Q 018652 116 ----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTV 173 (352)
Q Consensus 116 ----------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~ 173 (352)
...+...+++.||+++.+.. ..++ ... ..+...+| .++.+|.+|+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~---~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~ 145 (461)
T TIGR01350 82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFLD---PGT-VLVTGENGEETLTAKNIIIATGSRPRS 145 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc---CCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence 01112234556778776542 2222 222 24444454 479999999999999864
No 230
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00048 Score=67.42 Aligned_cols=100 Identities=25% Similarity=0.291 Sum_probs=63.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEec------CCccccc---------------------------ccC------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP------ENHLLQR---------------------------LFT------ 112 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~------~~~~~~~---------------------------~~~------ 112 (352)
..++|||+|+.|+.+|..+++.|.+|.++++ ...+-.. .++
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~ 84 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV 84 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence 4699999999999999999999999999997 1110000 000
Q ss_pred ----H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 113 ----P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 113 ----~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+ .+...+.+.++..+|+++.+. +..+.+..++....+...+++++++|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 0 001122334556788888654 3444432233322333334568999999999999985
No 231
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.72 E-value=0.00044 Score=56.92 Aligned_cols=93 Identities=25% Similarity=0.430 Sum_probs=60.0
Q ss_pred EEECCChHHHHHHHHHHhC-----CCcEEEEecCCcc------------------------ccc----------------
Q 018652 75 VVVGGGYIGMEVAAAAVGW-----KLDTTIIFPENHL------------------------LQR---------------- 109 (352)
Q Consensus 75 vVvGgG~~g~e~A~~l~~~-----g~~Vtvv~~~~~~------------------------~~~---------------- 109 (352)
+|||+|+.|+-++..|.+. ..+|+|+++.+.- .+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999877 4678999875110 000
Q ss_pred --------ccCH--HHHHHHH----HHHH--hCCcEEE-cCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 110 --------LFTP--SLAQRYE----QLYQ--QNGVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 110 --------~~~~--~~~~~l~----~~l~--~~gV~~~-~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
.+.| .+.+++. +.++ ..++++. ...+|+.+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 0000 1122222 2222 2344443 24578888876555 3678899999999999999996
No 232
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.72 E-value=1.4e-05 Score=68.41 Aligned_cols=73 Identities=36% Similarity=0.547 Sum_probs=53.7
Q ss_pred cCCceEEEECCCcEE----------EeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCC
Q 018652 3 YQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 72 (352)
Q Consensus 3 ~~~~V~~id~~~~~V----------~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 72 (352)
++++|.+|+...+.+ ...++.++.||+||||||+.|+. |.++|. +.....++..++..+......++
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~~~~~~~ 153 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLELLESPK 153 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHTHSSTTS
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccccccccc
Confidence 567899999888842 23456689999999999999764 455553 22223356677888888777777
Q ss_pred eEEEEC
Q 018652 73 KVVVVG 78 (352)
Q Consensus 73 ~vvVvG 78 (352)
+++|||
T Consensus 154 ~v~VvG 159 (201)
T PF07992_consen 154 RVAVVG 159 (201)
T ss_dssp EEEEES
T ss_pred cccccc
Confidence 999999
No 233
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.71 E-value=8.4e-05 Score=76.75 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=32.5
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..+++|+|||+|+.|+.+|..|++.|++||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35789999999999999999999999999999974
No 234
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.70 E-value=0.0005 Score=65.53 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=68.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--c-----------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----------------------------------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--~----------------------------------------- 108 (352)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+... .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999764210 0
Q ss_pred -------c--------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcCEEEEccCC
Q 018652 109 -------R--------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA 169 (352)
Q Consensus 109 -------~--------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~ 169 (352)
. .++ +.+...+.+.+.+.|+.++++..++++...++.. ..|.+. +|+ ++++|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 000 1222334445556788888888777775322222 245564 675 6899999999998
Q ss_pred CCC
Q 018652 170 KPT 172 (352)
Q Consensus 170 ~p~ 172 (352)
...
T Consensus 162 ~S~ 164 (390)
T TIGR02360 162 HGV 164 (390)
T ss_pred chh
Confidence 764
No 235
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.70 E-value=6.5e-05 Score=72.39 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=69.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|.|||+|+.|+.+|..|++.|++||++++.+.+-.. .++.++.+...+.|++.|++|++++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 4589999999999999999999999999999987654221 14567888888999999999999976531
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 172 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 172 (352)
.++++. ..-++|+|++++|.. |+
T Consensus 199 -------~it~~~-L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 199 -------DITLEE-LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred -------cCCHHH-HHHhhCEEEEeccccCCC
Confidence 111111 123459999999964 44
No 236
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00049 Score=67.02 Aligned_cols=96 Identities=28% Similarity=0.401 Sum_probs=62.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------c-------------cc--------c--cC-HHH
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-------------QR--------L--FT-PSL 115 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------~-------------~~--------~--~~-~~~ 115 (352)
+++|||+|+.|+..|..+++.|.+|+++++.+.- + .. . .+ +.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 6899999999999999999999999999986310 0 00 0 00 001
Q ss_pred H-----------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCc
Q 018652 116 A-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTV 173 (352)
Q Consensus 116 ~-----------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~ 173 (352)
. +.+...+++.+|+++.+. +..++ +.. ..|..++++ ++++|.+|+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~---~~~-v~v~~~~~~~~~~~d~lviATGs~p~~ 146 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFET---DHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcc---CCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence 0 112234556688887654 22222 222 245555553 69999999999999863
No 237
>PLN02507 glutathione reductase
Probab=97.68 E-value=0.00058 Score=67.19 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=65.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC---------Cccccc-----ccC-------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHLLQR-----LFT------------------------- 112 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~---------~~~~~~-----~~~------------------------- 112 (352)
..++|||+|+.|+.+|..++++|.+|.++++. ..+-.. +.+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~ 105 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN 105 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 36999999999999999999999999999951 111000 000
Q ss_pred ----HH--------------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCC
Q 018652 113 ----PS--------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT 172 (352)
Q Consensus 113 ----~~--------------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~ 172 (352)
-+ +...+++.+++.||+++.+ .+..+++ ....|.+.+|+ ++.+|.+|+|||.+|.
T Consensus 106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 00 0112234456678888876 3444432 22356667776 5889999999999987
Q ss_pred chh
Q 018652 173 VSP 175 (352)
Q Consensus 173 ~~~ 175 (352)
...
T Consensus 181 ~p~ 183 (499)
T PLN02507 181 RPN 183 (499)
T ss_pred CCC
Confidence 543
No 238
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00033 Score=59.68 Aligned_cols=99 Identities=15% Similarity=0.268 Sum_probs=73.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--------------------CcccccccCHHHHHHHHHHHHhCCcEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--------------------NHLLQRLFTPSLAQRYEQLYQQNGVKF 130 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--------------------~~~~~~~~~~~~~~~l~~~l~~~gV~~ 130 (352)
..+|+|||+|+.+...|.++++...+-.+++-. +-+-....++++.+.++++-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 458999999999999999999887666666522 112223457889999999999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652 131 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 131 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 173 (352)
++.+ |..++. ..+...+.+ +.+.+.+|.||+++|.....
T Consensus 88 ~tEt-Vskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITET-VSKVDL--SSKPFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred eeee-hhhccc--cCCCeEEEe-cCCceeeeeEEEecccceee
Confidence 9764 666653 233444544 55579999999999987653
No 239
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.67 E-value=0.0005 Score=67.00 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=35.8
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
+.+.+++.|++++.++.|++++.+ + ...|.+.+| ++.+|.||+|+|.-
T Consensus 189 L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 189 LRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCCc-EEECCEEEEccccc
Confidence 344457789999999999999742 2 235677766 59999999999853
No 240
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.67 E-value=0.0003 Score=69.71 Aligned_cols=104 Identities=20% Similarity=0.433 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhC---CCcEEEEecCCcc------cccccCH-----HHHHHHHHHHHhCCcEEEcCCeE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFTP-----SLAQRYEQLYQQNGVKFVKGASI 136 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~------~~~~~~~-----~~~~~l~~~l~~~gV~~~~~~~v 136 (352)
..+++|||.|..|.-+...+.+. -.+||++...+++ +.+.+.+ ++.-.-.++.+++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999988888873 4678888655443 2222222 33333457889999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178 (352)
Q Consensus 137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 178 (352)
..|++.. + .|.++.|.++.+|-+|+|||..|.......
T Consensus 83 ~~idr~~--k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG 120 (793)
T COG1251 83 IQIDRAN--K--VVTTDAGRTVSYDKLIIATGSYPFILPIPG 120 (793)
T ss_pred EEeccCc--c--eEEccCCcEeecceeEEecCccccccCCCC
Confidence 9998642 2 678899999999999999999997654433
No 241
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.67 E-value=0.00068 Score=64.51 Aligned_cols=97 Identities=22% Similarity=0.395 Sum_probs=66.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc--------------c------------------cc----------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------L------------------QR---------- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~--------------~------------------~~---------- 109 (352)
+|+|||+|+.|+-+|..|++.|.+|.++++. +.+ + +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999976 210 0 00
Q ss_pred ---c---cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC------C--CEEEcCEEEEccCCCCC
Q 018652 110 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPT 172 (352)
Q Consensus 110 ---~---~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p~ 172 (352)
. ++ ..+.+.+.+...+.|++++.+ .++++..++++ . .+.+.+ | .++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0 00 022234555567789999765 58888754333 2 344432 2 36999999999997653
No 242
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.66 E-value=0.00077 Score=64.38 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=64.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------c--------c-
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------R--------L- 110 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------------~--------~- 110 (352)
+|+|||+|+.|+.+|..|++.|.+|.++++...+.. . .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999997632100 0 0
Q ss_pred --------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEec-CCCcEEEEEc--CC-----C--CEEEcCEEEEccCCCC
Q 018652 111 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP 171 (352)
Q Consensus 111 --------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-~~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p 171 (352)
++ ..+.+.+.+...+.|++++.++ +..+... ..+....+++ .+ | .++++++||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1112334555677899998775 6666421 1122223332 21 3 3799999999999876
Q ss_pred C
Q 018652 172 T 172 (352)
Q Consensus 172 ~ 172 (352)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 4
No 243
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.65 E-value=0.00065 Score=64.01 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999865
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.00016 Score=69.33 Aligned_cols=98 Identities=23% Similarity=0.382 Sum_probs=68.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC------------------------------------------ccccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~------------------------------------------~~~~~ 109 (352)
-.|+|||||..|+|.|...++.|.++.+++.+. +++..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 579999999999999999999999998887651 11111
Q ss_pred ccCHH------------HHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 110 LFTPS------------LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 110 ~~~~~------------~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
..+|. +...+++.++. .++.+..+ .|.++.-.++.++..|.+.+|..+.|+.||++||.-
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 11221 22334444444 36666654 355554333335889999999999999999999964
No 245
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00014 Score=74.61 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=70.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~ 141 (352)
.+++|.|||+|+.|+.+|..|.+.|+.|++++|++++-. .-++..+.++-.++|.+.||+|++|+.+-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk--- 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK--- 1860 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc---
Confidence 578999999999999999999999999999999987622 114566777777889999999999875421
Q ss_pred cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
.+. -|+-.-+.|.||+|+|..-
T Consensus 1861 -------~vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1861 -------HVS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred -------ccc-HHHHhhccCeEEEEeCCCC
Confidence 111 2233456899999999753
No 246
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.62 E-value=0.00052 Score=70.02 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.+|+|||||.+|+.+|..|+++|.+|+|+++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 47999999999999999999999999999976
No 247
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.61 E-value=0.00092 Score=65.45 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=46.9
Q ss_pred HHHHHHHHHHh----CC--cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCc
Q 018652 115 LAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182 (352)
Q Consensus 115 ~~~~l~~~l~~----~g--V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 182 (352)
+...+.+.+++ .| ++++++++|++++..+ +....|.+.+| ++.+|.||+|+|.-.. .+++.+|+.
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 44556666677 67 8899999999998642 33456777777 6999999999996543 456666653
No 248
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.60 E-value=0.00078 Score=57.60 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT 112 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~ 112 (352)
....|+|||+|+.|+.+|..|++.|.+|.+++++..+-... -.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 34689999999999999999999999999999874321100 01
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCc
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~ 173 (352)
.+....+....-+.|+++.....++.+--.+++++..+... |--.+++..||-+||...+.
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 12223333333458999999988888754334677666542 22379999999999998754
No 249
>PRK14727 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.00065 Score=66.58 Aligned_cols=101 Identities=26% Similarity=0.462 Sum_probs=65.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------------------------c--c------ccCHH-
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------Q--R------LFTPS- 114 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------------------------~--~------~~~~~- 114 (352)
...++|||+|+.|+.+|..|+++|.+|+++++.+.+- + . .++..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 95 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL 95 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence 4579999999999999999999999999999762110 0 0 00000
Q ss_pred H-------HH-----HHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652 115 L-------AQ-----RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 115 ~-------~~-----~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~ 176 (352)
+ .. ...+.++.. ||+++.+. ..+. +.....|.+.+|+ ++.+|.+|+|||.+|....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~---~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i 167 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFK---DGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPI 167 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEe---cCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCC
Confidence 0 00 122233333 78887664 2333 1223356666764 69999999999999875433
No 250
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.59 E-value=0.00077 Score=67.10 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999976
No 251
>PRK11445 putative oxidoreductase; Provisional
Probab=97.57 E-value=0.0011 Score=62.10 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=66.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------ccccCH-------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP------------------------------- 113 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------~~~~~~------------------------------- 113 (352)
+|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999999 9999999765210 000000
Q ss_pred ------------------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCCCCC
Q 018652 114 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT 172 (352)
Q Consensus 114 ------------------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~ 172 (352)
.+.+.+.+ ..+.|++++.++.+++++..+++. .+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 00111222 234689999999999998654432 3443 5664 6899999999998754
No 252
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.56 E-value=0.0015 Score=62.66 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
++|+|||+|.+|+-+|..|++.|.+|+|++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999998763
No 253
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=0.00067 Score=66.24 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..++|||+|+.|+.+|..++++|.+|++++++
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999975
No 254
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.53 E-value=0.00088 Score=64.33 Aligned_cols=59 Identities=25% Similarity=0.416 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 172 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~ 172 (352)
..+...+.+.+++.|+++++++.++++..+ ++++..+... +|+ ++.++.||+|+|-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 345677788889999999999999999874 6688777765 454 5789999999997654
No 255
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.52 E-value=0.0015 Score=65.98 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..-.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 3357999999999999999999999999999976
No 256
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=0.00071 Score=65.91 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.++|||+|+.|+.+|..|++.|.+|.+++++
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999999973
No 257
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.50 E-value=0.0015 Score=63.75 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=73.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-c------cc---------------------c-----------cC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-L------QR---------------------L-----------FT 112 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-~------~~---------------------~-----------~~ 112 (352)
-.|+|||+|..|+-+|..+++.|.+|.|+++.+.. . .. . .+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD 84 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999875310 0 00 0 00
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc
Q 018652 113 ----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 146 (352)
Q Consensus 113 ----------------------------------------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~ 146 (352)
..+...+.+.+++.|++++.+++++++..+ +++
T Consensus 85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~ 163 (466)
T PRK08274 85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGR 163 (466)
T ss_pred HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe
Confidence 112334455567789999999999999754 566
Q ss_pred EEEEEcC--CC--CEEEcCEEEEccCC-CCCchhhh
Q 018652 147 VAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE 177 (352)
Q Consensus 147 ~~~v~~~--~g--~~i~~D~vi~a~G~-~p~~~~~~ 177 (352)
+..+... ++ ..+.++.||+|+|. ..|.++++
T Consensus 164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 6666552 33 36889999999984 34434443
No 258
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.48 E-value=0.0015 Score=64.97 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=71.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------------------------------------- 106 (352)
-.|+|||+|..|+-+|..+++.|.+|.|+++....
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 46999999999999999999999999999865110
Q ss_pred ----------------cc------------------cc-------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652 107 ----------------LQ------------------RL-------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 145 (352)
Q Consensus 107 ----------------~~------------------~~-------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~ 145 (352)
+. +. .+..+...+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 00 12234556666777788999999999998755445
Q ss_pred cEEEEEcC-------CC-CEEEcCEEEEccCCC
Q 018652 146 RVAAVKLE-------DG-STIDADTIVIGIGAK 170 (352)
Q Consensus 146 ~~~~v~~~-------~g-~~i~~D~vi~a~G~~ 170 (352)
++..+... ++ ..+.++.||+|+|..
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 66665442 23 368899999999863
No 259
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.47 E-value=0.0019 Score=62.61 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-----------------c----------------cc------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------Q----------------RL------ 110 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-----------------~----------------~~------ 110 (352)
..-+|+|||||+.|+-+|..|++.|.+|.++++..... + ..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 34589999999999999999999999999998763210 0 00
Q ss_pred -----------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEcCC-------C--CEEEcCEEEEccC
Q 018652 111 -----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLED-------G--STIDADTIVIGIG 168 (352)
Q Consensus 111 -----------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~~~-------g--~~i~~D~vi~a~G 168 (352)
++ ..+.+.+.+...+.|++++.+ .+++++...+ +....+.+.+ | .++.+|.||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 012234555567789999765 4667753211 1112343321 3 4799999999999
Q ss_pred CCC
Q 018652 169 AKP 171 (352)
Q Consensus 169 ~~p 171 (352)
...
T Consensus 197 ~~S 199 (450)
T PLN00093 197 ANS 199 (450)
T ss_pred cch
Confidence 765
No 260
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.46 E-value=0.0016 Score=63.91 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=63.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCC--------cccc--------------------------cc--c--CH-
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLLQ--------------------------RL--F--TP- 113 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--------~~~~--------------------------~~--~--~~- 113 (352)
.++|||+|+.|+.+|..+++.|.+|.++++.. .+-. .. + ..
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 83 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET 83 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 68999999999999999999999999999520 0000 00 0 00
Q ss_pred -----------------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652 114 -----------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 114 -----------------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 174 (352)
.+.+.....+++.||+++.+. -++. +.+...|...+| +++++|.+|+|||.+|...
T Consensus 84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~--a~f~---~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY--AEFV---DKHRIKATNKKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE--EEEc---CCCEEEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence 012233456777889998764 2333 112223443344 3699999999999998744
No 261
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.45 E-value=0.0018 Score=63.20 Aligned_cols=97 Identities=29% Similarity=0.401 Sum_probs=67.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------------------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------------------------------------- 106 (352)
..|+|||+|..|+-+|..+++.|.+|.|+++....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46999999999999999999999999998864110
Q ss_pred ---------------c-----------cc------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652 107 ---------------L-----------QR------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154 (352)
Q Consensus 107 ---------------~-----------~~------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~ 154 (352)
+ ++ ..+..+.+.+.+.+++.|++++.+ .++.+.. +++.+..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 0 00 001234445555666778888765 5666654 3456656655 4
Q ss_pred CCEEEcCEEEEccCCCC
Q 018652 155 GSTIDADTIVIGIGAKP 171 (352)
Q Consensus 155 g~~i~~D~vi~a~G~~p 171 (352)
++.+.++.||+|||...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 56799999999999754
No 262
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.45 E-value=0.00056 Score=60.08 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=68.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 109 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------------------------------- 109 (352)
+++|||+|..|+-+|..|+..|.+|||++++.-+..|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 5899999999999999999999999999987211000
Q ss_pred ------------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCC
Q 018652 110 ------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGA 169 (352)
Q Consensus 110 ------------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~ 169 (352)
... +.++ .+.+. -....+++++++|+++... +....+..++|. ...+|.|+++++.
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~-LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKF-LATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchH-HHHHH-Hhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCC
Confidence 011 1111 22222 2235778888889998765 334577776664 6789999999886
Q ss_pred CCCchhh
Q 018652 170 KPTVSPF 176 (352)
Q Consensus 170 ~p~~~~~ 176 (352)
-....+|
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 5444444
No 263
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.45 E-value=0.0024 Score=61.29 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=38.9
Q ss_pred HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhc
Q 018652 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179 (352)
Q Consensus 121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 179 (352)
+.+++.|++++.++.|++++.. ++.+..+++.++ ++.+|.||+|+|.-.. .++...
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~ 264 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPL 264 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHh
Confidence 3346678999999999998754 344445666554 6999999999997543 344433
No 264
>PRK07121 hypothetical protein; Validated
Probab=97.42 E-value=0.0024 Score=62.83 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEc-CEEEEccCCC-CCchhhh
Q 018652 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFE 177 (352)
Q Consensus 117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~~~~ 177 (352)
..+.+.+++.|+++++++.++++..++++++..|...+ ++ .+.+ +.||+|+|-- .|.++++
T Consensus 181 ~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 181 DPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 34555567788999999999998765456776665533 33 5778 9999999954 3434443
No 265
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=97.38 E-value=0.00099 Score=51.20 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=24.9
Q ss_pred cEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652 287 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 319 (352)
Q Consensus 287 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 319 (352)
+-++||+++++|+|+++ .|--..+...|++|+
T Consensus 100 kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 100 KGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp EEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred ceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 56789999999999997 677778888888874
No 266
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.37 E-value=0.0024 Score=61.74 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecC-CCcEEEEEcCC-CCEEEcCEEEEccC-CCCCchhhhh
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER 178 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~-~~~~~~v~~~~-g~~i~~D~vi~a~G-~~p~~~~~~~ 178 (352)
.+.+.+.+++.|+++++++.++++..++ ++.+..+...+ +..+.++.||+|+| +..|.+++.+
T Consensus 126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 126 TNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 3455556677899999999999987543 45666665443 35789999999999 4555555544
No 267
>PRK07846 mycothione reductase; Reviewed
Probab=97.36 E-value=0.00082 Score=65.32 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=58.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----ccccc---------------------cC----------HHHH-
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LLQRL---------------------FT----------PSLA- 116 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----~~~~~---------------------~~----------~~~~- 116 (352)
.++|||+|+.|..+|.. ..|.+|.+|++..- +...+ ++ +.+.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVS 80 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHH
Confidence 58999999999877654 46999999997510 00000 00 0011
Q ss_pred ------HHH-----HHH-HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652 117 ------QRY-----EQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175 (352)
Q Consensus 117 ------~~l-----~~~-l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 175 (352)
+.+ ... +++.||+++.+.. .-++ . + .|++.+|+++.+|.+|+|||.+|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~---~-~--~V~v~~g~~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 81 RVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA-RFIG---P-K--TLRTGDGEEITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHhccchhhhhhhhCCcEEEEEEE-EEec---C-C--EEEECCCCEEEeCEEEEcCCCCCCCCC
Confidence 111 112 4556788877642 2222 1 1 466677888999999999999997543
No 268
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.36 E-value=0.0036 Score=61.68 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEec-CC--CcEEEEEcC-CCC-----EEEcCEEEEccCCCC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE-DGS-----TIDADTIVIGIGAKP 171 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-~~--~~~~~v~~~-~g~-----~i~~D~vi~a~G~~p 171 (352)
.+...+.+.++++||+|+++++|+++..+ ++ +.+..|... +|+ ..+.|.||+++|.-.
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 44455667779999999999999999864 23 567777664 232 356999999999754
No 269
>PLN02985 squalene monooxygenase
Probab=97.35 E-value=0.0029 Score=62.40 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 457999999999999999999999999999976
No 270
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00068 Score=61.53 Aligned_cols=102 Identities=26% Similarity=0.384 Sum_probs=80.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v 136 (352)
..-.|+|||||+.|...|-+.+++|.+.-++..+ ..+ .+..-+|.+...+++..+++.|.+....+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 3457999999999999999999998776443211 111 123457889999999999999999988888
Q ss_pred EEEEecC-CCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 137 KNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 137 ~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
+.+++.. .+....|++++|-.+++..+|++||.+=
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 8887632 3446689999999999999999999863
No 271
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.34 E-value=0.0031 Score=63.12 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=37.3
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~ 170 (352)
+.+.+++.||+++.++.++++..+ ++++..+.. .+|+ .+.++.||+|+|..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 344456678999999999998754 566655543 4564 58899999999964
No 272
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.34 E-value=0.00056 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=54.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc------cCHH------HHHHHHHHHHhCCcEEEcCCeEEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN 138 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------~~~~------~~~~l~~~l~~~gV~~~~~~~v~~ 138 (352)
.++++|||||..|++.|..|++.|.+|+++++++.+-.++ |+.. +...+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5789999999999999999999999999999998764432 2221 223334444456899999999999
Q ss_pred EEe
Q 018652 139 LEA 141 (352)
Q Consensus 139 i~~ 141 (352)
+..
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 864
No 273
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0039 Score=59.05 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
...+|+|||||.+|+-+|..|++.|.+|+++++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence 3568999999999999999999999999999966
No 274
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.31 E-value=0.0033 Score=57.05 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEe-cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~-~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
..+.++..+++.|+.++.+..++.+.. ++++....|++.+|..+.++-+|+++|.=-+
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 345677788999999999999888763 3345666899999999999999999996443
No 275
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.27 E-value=0.0032 Score=63.80 Aligned_cols=103 Identities=22% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc----------------------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ---------------------------------------- 108 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~---------------------------------------- 108 (352)
...+|+|||+|+.|+.+|..|+++ |.+|+|+++.+....
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 345899999999999999999995 999999997621100
Q ss_pred -----------c--------------ccC-HHHHHHHHHHHHhCC--cEEEcCCeEEEEEecCCC-cEEEEEcC------
Q 018652 109 -----------R--------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------ 153 (352)
Q Consensus 109 -----------~--------------~~~-~~~~~~l~~~l~~~g--V~~~~~~~v~~i~~~~~~-~~~~v~~~------ 153 (352)
+ .+. ..+.+.+.+.+.+.+ +++..++++++++.++++ ....+++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0 000 023344556666665 578889999999754322 22244443
Q ss_pred CC--CEEEcCEEEEccCCCCC
Q 018652 154 DG--STIDADTIVIGIGAKPT 172 (352)
Q Consensus 154 ~g--~~i~~D~vi~a~G~~p~ 172 (352)
+| +++.+|+||-|-|.+..
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CCceEEEEeCEEEECCCCchH
Confidence 35 47999999999998764
No 276
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.25 E-value=0.0023 Score=61.77 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=65.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------cc---c---------C--
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------RL---F---------T-- 112 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------~~---~---------~-- 112 (352)
.-.++|||+|+.|...|..++++|.+|.++++.+.+-. .. + +
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~ 83 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFE 83 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHH
Confidence 34699999999999999999999999999988742200 00 0 0
Q ss_pred ----------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 113 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 113 ----------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
......++.+++++||+++.+. -++.. .+...|...+.++++++.+|+|||.+|...
T Consensus 84 ~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~--a~f~~---~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 84 KLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE--ARFVD---PHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE--EEECC---CCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 0111223445566789988764 34431 222233322246899999999999999754
No 277
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.23 E-value=0.0033 Score=59.29 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=68.5
Q ss_pred HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
..+..+....++.-..+-+.....+.+.+.+.+.+++.|+++++++.|..++.. ++.+..+.+.+|.++++|.||+|+|
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence 344455555555433322333456788889999999999999999999999854 4556788999999999999999999
Q ss_pred CCCCch---hhhhcCCccc
Q 018652 169 AKPTVS---PFERVGLNSS 184 (352)
Q Consensus 169 ~~p~~~---~~~~~gl~~~ 184 (352)
+..... +.+..|+...
T Consensus 228 rsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 228 RSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred cchHHHHHHHHHhcCcccc
Confidence 988632 2344455443
No 278
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.23 E-value=0.0048 Score=62.11 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 171 (352)
...+.+.+++.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|||--.
T Consensus 152 ~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 152 LHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3445555667889999999999987554467777653 4664 678999999998643
No 279
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.23 E-value=0.0048 Score=62.33 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~ 170 (352)
+...+.+..++.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|||--
T Consensus 168 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 168 MLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 33445555666789999999888876534677776653 4564 57899999999754
No 280
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.22 E-value=0.0042 Score=62.54 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.6
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCC
Q 018652 127 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 127 gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~ 170 (352)
||+++.++.++++..++++++..|... +|+ .+.++.||+|||--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 799999999998875545677777653 454 57899999999863
No 281
>PRK08275 putative oxidoreductase; Provisional
Probab=97.22 E-value=0.0061 Score=60.88 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCC
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p 171 (352)
+...+.+.+++.||+++.++.++++..++++++..+. ..+|+ .+.++.||+|+|...
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3445556667789999999999998754356666554 34564 578999999999753
No 282
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.20 E-value=0.0013 Score=64.82 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 102 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~ 102 (352)
..++|||+|+.|+.+|..++++|.+|.++++
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4799999999999999999999999999995
No 283
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.19 E-value=0.0046 Score=60.98 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999977
No 284
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0013 Score=62.05 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
...|+|||||..|||.|...++.|.+.++++.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 357999999999999999999999999998866
No 285
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.16 E-value=0.006 Score=58.02 Aligned_cols=89 Identities=20% Similarity=0.461 Sum_probs=60.2
Q ss_pred HHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEc---CCC--CEEEcCEEEEccCCCCCchhhhhcCCcc--cCCcE
Q 018652 117 QRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL---EDG--STIDADTIVIGIGAKPTVSPFERVGLNS--SVGGI 188 (352)
Q Consensus 117 ~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~--~~g~i 188 (352)
+.+.+.+.+. |++++++++|+.|++.+++.- .|.. .+| .++.+++|+++.|--.- .+++.+|++. .-|+.
T Consensus 185 r~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gyggf 262 (488)
T PF06039_consen 185 RQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGYGGF 262 (488)
T ss_pred HHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhcccCCC
Confidence 3344444555 999999999999998877742 2332 233 47999999999998753 6888888853 34555
Q ss_pred EeC-CCCCCCCC--------CEEEeccc
Q 018652 189 QVD-GQFRTRMP--------GIFAIGDV 207 (352)
Q Consensus 189 ~vd-~~~~t~~~--------~Iya~GD~ 207 (352)
+|. .++++..| -||..-.+
T Consensus 263 PVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 263 PVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred cccceEEecCCHHHHHHhcceeeeeCCC
Confidence 554 56666544 36666554
No 286
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.15 E-value=0.0066 Score=60.97 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 171 (352)
...+.+...+.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|||--.
T Consensus 146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3444455566789999999999887544677777654 3564 578999999998643
No 287
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0061 Score=58.10 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=62.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCC---CcEEEEecCCccc-------------------------c---------------
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL-------------------------Q--------------- 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~~~-------------------------~--------------- 108 (352)
.+|+|||+|++|+.+|..|.+.- ..|+++++.+++. +
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 57999999999999999998752 2388888773320 0
Q ss_pred ------------------cccCHHHHHHHHHHHHhCC---cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652 109 ------------------RLFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167 (352)
Q Consensus 109 ------------------~~~~~~~~~~l~~~l~~~g---V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 167 (352)
+.++.-+.+.+...+++.- +.++. .+.+.+.+.+++....+...+|+...||.+|++|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0011111222222233332 44432 3344444443455556778899999999999999
Q ss_pred CCCCCc
Q 018652 168 GAKPTV 173 (352)
Q Consensus 168 G~~p~~ 173 (352)
|..+..
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 987654
No 288
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.13 E-value=0.0067 Score=61.22 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=32.7
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 355789999999999999999999999999999864
No 289
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.12 E-value=0.006 Score=60.75 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~ 170 (352)
...+.+.+++.||++++++.++++..++++++..+.. .+|+ .+.++.||+|||--
T Consensus 137 ~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 137 MMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 3445555666789999999999987544444655542 4564 58899999999974
No 290
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.10 E-value=0.0062 Score=60.94 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCC
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 169 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~ 169 (352)
...+.+.+.+.||+++.++.++++..+ ++++..+... +|+ .+.++.||+|||-
T Consensus 139 ~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 139 LHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 334555556678999999999998754 6777776543 333 5789999999995
No 291
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.09 E-value=0.0055 Score=60.18 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC-C--CEEEcCEEEEccCCCC
Q 018652 114 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKP 171 (352)
Q Consensus 114 ~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g--~~i~~D~vi~a~G~~p 171 (352)
.+...+.+.+++ .||+++.++.++++..+ ++.+..+...+ + ..+.++.||+|+|...
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 344555666666 58999999999998753 45555554433 3 3689999999999754
No 292
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.09 E-value=0.00088 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652 76 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108 (352)
Q Consensus 76 VvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 108 (352)
|||+|..|+.+|..|++.|.+|+|+++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999886643
No 293
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.08 E-value=0.0076 Score=61.13 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCC
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~ 170 (352)
+.+.+++.||+++.++.++++..+ ++++..|... +|+ .+.++.||+|||--
T Consensus 176 L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 176 LSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 334556778999999999998753 5677766653 454 58899999999973
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.07 E-value=0.0037 Score=61.30 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=28.8
Q ss_pred CeEEEECCChHHHHHHHHHHhC-CCcEEEEec
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFP 102 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~ 102 (352)
-.++|||+|+.|..+|..++++ |.+|.+|++
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 4699999999999999999997 899999996
No 295
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.07 E-value=0.0096 Score=60.07 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=29.2
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-+|..+++. |.+|.|+++.
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3699999999999999999998 9999999865
No 296
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.04 E-value=0.0094 Score=60.36 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 171 (352)
..+.+...+.||+++.++.+.++..++++++..+.. .+|+ .+.++.||+|||--.
T Consensus 191 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 191 HTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 444555566789999998888876444567766654 3564 578999999998643
No 297
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.03 E-value=0.0025 Score=61.93 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=24.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.++|||+|+.|..+|. +..|.+|.+|+++
T Consensus 3 yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~ 32 (452)
T TIGR03452 3 YDLIIIGTGSGNSIPDP--RFADKRIAIVEKG 32 (452)
T ss_pred cCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence 36899999999988754 4579999999975
No 298
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.03 E-value=0.008 Score=58.08 Aligned_cols=55 Identities=9% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEE-cCCCC--EEEcCEEEEccCCC
Q 018652 115 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 115 ~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~ 170 (352)
+.+.+.+.+++ .||++++++.++++..+ ++++..+. ..+++ .+.++.||+|+|--
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 44455555554 58999999999998643 45555543 33454 58899999999964
No 299
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.01 E-value=0.0021 Score=66.66 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 105 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~ 105 (352)
+|+|||||+.|+-+|..|++. |.+|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999998754
No 300
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.00 E-value=0.009 Score=58.99 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
...|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999976
No 301
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.00 E-value=0.0032 Score=61.13 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|+|+|.+|+.+|..|++.|.+|+++++... +.+.+. .+.+.+.|++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~~-~~~l~~~~~~~~~~~~~~------------ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKEA-LEELGELGIELVLGEYPE------------ 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHHH-HHHHHhcCCEEEeCCcch------------
Confidence 478999999999999999999999999999987541 122222 234567788876543221
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
...-.+|.||.++|..|+.+++
T Consensus 64 -----~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHH
Confidence 0112589999999998887754
No 302
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.98 E-value=0.011 Score=59.24 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCC
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p 171 (352)
+...+.+.+++.||+++.++.++++..+ ++++..+. ..+|+ .+.++.||+|+|.-.
T Consensus 137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 4445666667789999999999998643 56655543 34564 588999999999753
No 303
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.014 Score=58.83 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-.|..+++.|.+|+|++..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999999874
No 304
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.94 E-value=0.012 Score=59.51 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999999865
No 305
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.93 E-value=0.013 Score=58.86 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=41.4
Q ss_pred HHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcC-EEEEccC-CCCCchhhhh
Q 018652 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 178 (352)
Q Consensus 120 ~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 178 (352)
.+..++.|+++++++.++++..++++++..|... +++ ++.+. .||+|+| +..|.+++++
T Consensus 220 ~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 220 RLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 3445677899999999999987666777776553 343 46786 5888887 4556566554
No 306
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.90 E-value=0.0034 Score=58.56 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
..+|+|||||..|+-.|..|.++|.+|.|++.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3579999999999999999999999999999763
No 307
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.87 E-value=0.019 Score=57.69 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCcEEEcCCeEEEEEecCC---CcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 171 (352)
Q Consensus 115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~---~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 171 (352)
+...+.+.+++.||+++.++.++++..+++ +++.++.. .+|+ .+.++.||+|||...
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 445566667788999999999999865432 66666643 4554 578999999999754
No 308
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.84 E-value=0.026 Score=55.34 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652 119 YEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 182 (352)
Q Consensus 119 l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 182 (352)
+.+.+. ..|+++++++.|+.++..+++.. .+. +.+++ ++.+|.||+|.|.-.. .+++.+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 333343 35899999999999986534332 233 34453 6899999999998764 567766654
No 309
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.82 E-value=0.015 Score=58.88 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.++|||+|..|..+|..++++|.+|.+|++.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6999999999999999999999999999853
No 310
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.81 E-value=0.019 Score=57.70 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=28.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCC---CcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-+|..+++.| .+|+|+++.
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 35999999999999999999998 799998865
No 311
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.79 E-value=0.016 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..|+|||+|..|+-.|..+++.|.+|.|+++.
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 46999999999999999999999999999843
No 312
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.73 E-value=0.00074 Score=60.63 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=64.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEecCCcc-cc---cccCHHHHHHHHHH------HHhCCcEEEcCCeEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENHL-LQ---RLFTPSLAQRYEQL------YQQNGVKFVKGASIK 137 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtvv~~~~~~-~~---~~~~~~~~~~l~~~------l~~~gV~~~~~~~v~ 137 (352)
.--+++|||||.-|+.+|..+.++ + -+|-++++.+.- .. ...+..+. .+... +--.|.+.+. ..|.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~-~l~~srr~~a~liP~~a~wi~-ekv~ 115 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK-SLDSSRRKQASLIPKGATWIK-EKVK 115 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh-hhhhccCcccccccCCcHHHH-HHHH
Confidence 456799999999999999998764 3 367888876532 11 11121111 11110 1111222222 3456
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhc
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 179 (352)
+++++++ .|.+.+|++|.+|.+|+|.|..-+.+.++.+
T Consensus 116 ~f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 116 EFNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred hcCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 6665432 6788999999999999999998876655443
No 313
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.72 E-value=0.0036 Score=53.92 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=65.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|||||.+|..-+..|.+.|.+|+|+.+.. .++ +.+..++.+++++.+. +
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~-------~~~----l~~l~~~~~i~~~~~~----~---------- 62 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL-------ESE----LTLLAEQGGITWLARC----F---------- 62 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC-------CHH----HHHHHHcCCEEEEeCC----C----------
Confidence 57899999999999999999999999999997642 222 3333333445554321 0
Q ss_pred EEcCCCCEEEcCEEEEccCCC-CCchhhhhcCCcccCCcEEe---CC-CCCC-CCCCEEEecccc
Q 018652 150 VKLEDGSTIDADTIVIGIGAK-PTVSPFERVGLNSSVGGIQV---DG-QFRT-RMPGIFAIGDVA 208 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~~g~i~v---d~-~~~t-~~~~Iya~GD~a 208 (352)
..+..-.+++||.|||.. .|..+...+ ...++.| |+ .+.+ ..|.++--||..
T Consensus 63 ---~~~dl~~~~lVi~at~d~~ln~~i~~~a----~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~ 120 (205)
T TIGR01470 63 ---DADILEGAFLVIAATDDEELNRRVAHAA----RARGVPVNVVDDPELCSFIFPSIVDRSPVV 120 (205)
T ss_pred ---CHHHhCCcEEEEECCCCHHHHHHHHHHH----HHcCCEEEECCCcccCeEEEeeEEEcCCEE
Confidence 011123489999999986 554444332 1123444 22 2211 346666667653
No 314
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.66 E-value=0.027 Score=56.62 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=41.8
Q ss_pred HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEc-CEEEEccCCC-CCchhhhh
Q 018652 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFER 178 (352)
Q Consensus 118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~~~~~ 178 (352)
.+.+.+++.|++++.++.++++..+ ++++..|...+ |+ .+.+ +.||+|+|.- .|.+++++
T Consensus 226 aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 226 RLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 3556667789999999999998753 57777776543 33 4675 7899999864 44455544
No 315
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.64 E-value=0.013 Score=58.33 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.-.|+|||+|..|+-+|..+. .|.+|.|+++.
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~ 40 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKD 40 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence 346999999999999999986 48999998865
No 316
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.61 E-value=0.003 Score=60.13 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
++|+|||||.+|+++|..|+++|.+|+|+++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976544
No 317
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.59 E-value=0.002 Score=56.38 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=58.3
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC--------C---eEEEE
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG--------A---SIKNL 139 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~--------~---~v~~i 139 (352)
+.+|||||..|+.+|..|+.+ ..+|.+++.++-+..- .--..+.+.+++..|+=..- + .|..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~ 76 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTW 76 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhh
Confidence 368999999999999999876 4577787766533221 11122333333333321100 0 02223
Q ss_pred EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
+ .....+.+.+|.++.++.+++|+|.+|.
T Consensus 77 ~----s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 77 D----SSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred c----cccceEEecCCceeeEEEEEEecCCCcc
Confidence 2 1223788999999999999999999996
No 318
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.58 E-value=0.018 Score=56.91 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..|+|||+|..|+-.|..+++ |.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 469999999999999999876 8899998865
No 319
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.57 E-value=0.018 Score=52.09 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=37.9
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEcCC--CC--EEEcCEEEEccCCCCC--chhhhhc
Q 018652 127 GVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKPT--VSPFERV 179 (352)
Q Consensus 127 gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g~--~i~~D~vi~a~G~~p~--~~~~~~~ 179 (352)
-+++.++++|+.|.+ .++++..|+..| |+ .+.+|.||+|+|--.. .++|++.
T Consensus 159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKEY 216 (477)
T ss_pred HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHHh
Confidence 378899999999984 578888877643 43 5889999999986543 3455543
No 320
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.55 E-value=0.035 Score=56.56 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCC
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 169 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~ 169 (352)
+.+.+.+.||+++.++.+.++..+ ++++.++.. .+|+ .+.++.||+|||-
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 334556788999999999998753 566655543 4565 4679999999994
No 321
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.54 E-value=0.0038 Score=62.33 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCCeEEEECCChHHHHHHHH-------HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652 70 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 142 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~-------l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~ 142 (352)
.++.++++|++.++++.+.. +.+.+.+|+++........ .++..+...+.+.+++.|+++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 35568899999999998865 5666777777554433332 356778888889999999999999999999854
Q ss_pred CCCcEEEEEcC-CCC--EEEcC-EEEEccC-CCCCchhhhh
Q 018652 143 SDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 178 (352)
Q Consensus 143 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 178 (352)
++++..|... +++ .+.++ .||+|+| +.+|.++++.
T Consensus 238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 5666666553 443 47785 6888665 6676666554
No 322
>PLN02815 L-aspartate oxidase
Probab=96.54 E-value=0.022 Score=57.28 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-.|..+++.| +|.|+++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 89998865
No 323
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=96.52 E-value=0.0063 Score=46.81 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh--hhhcCCCchHHHHHHHH
Q 018652 288 IATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIAR 343 (352)
Q Consensus 288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~e~~~~~~ 343 (352)
+.++.++ +++|+|+++++.++.++.... .+|+++.+++. ..+..+|+++|++..||
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 4555554 589999999888888877554 56799999887 33799999999999886
No 324
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.52 E-value=0.037 Score=55.60 Aligned_cols=54 Identities=31% Similarity=0.452 Sum_probs=39.4
Q ss_pred HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CCC-EEEc-CEEEEccCCCCC
Q 018652 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 172 (352)
Q Consensus 118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g~-~i~~-D~vi~a~G~~p~ 172 (352)
.+.+.+++.|++++.++.++++..+ ++++..|... ++. ++.+ +.||+|+|.-.+
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4455667889999999999998754 5666655442 333 5788 999999987554
No 325
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.48 E-value=0.027 Score=55.03 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..-.++|||||..|+-+|..++.+|.+|.++++.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~ 44 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG 44 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence 4567999999999999999999999999999987
No 326
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.46 E-value=0.009 Score=53.14 Aligned_cols=34 Identities=41% Similarity=0.564 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC------CcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g------~~Vtvv~~~ 103 (352)
..++++|+|||.+|+-.|.+|++.+ ..||+++..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 4589999999999999999999987 689999866
No 327
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.43 E-value=0.0066 Score=60.88 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=77.0
Q ss_pred hcCCCeEEEECCCh--HHHHHHHHHHhCCCcEEEEecCCcccccc-------------cCHHHHHHHHHHHHhCCcEEEc
Q 018652 68 LEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVK 132 (352)
Q Consensus 68 ~~~~~~vvVvGgG~--~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------~~~~~~~~l~~~l~~~gV~~~~ 132 (352)
....+++.|+|++. ++.+++..+...+.+++++.+..+++... .+..+...+.+.+++.|++++.
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~ 233 (574)
T PRK12842 154 RPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT 233 (574)
T ss_pred cCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 34567888999998 89999999999998888766554444321 1235666778888899999999
Q ss_pred CCeEEEEEecCCCcEEEEEcCC--CC-EEEcC-EEEEccCCCCC
Q 018652 133 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 172 (352)
Q Consensus 133 ~~~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~ 172 (352)
++.++++..+ ++++..|...+ ++ .+.++ .||+|+|..++
T Consensus 234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999999754 56666665533 33 47785 79999997764
No 328
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.41 E-value=0.021 Score=52.18 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
+..+|+|||+|.+|+.+|..|+++ .+||+++.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~ 39 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD 39 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecc
Confidence 457899999999999999999876 678887755
No 329
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.39 E-value=0.045 Score=55.00 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.4
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~ 103 (352)
.|+|||+|..|+-+|..+++. |.+|+|+++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 599999999999999999987 4789999875
No 330
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.37 E-value=0.026 Score=55.78 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEcCEEEEccCCC
Q 018652 115 LAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAK 170 (352)
Q Consensus 115 ~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~ 170 (352)
+...+.+.+++. ||+++.++.++++..+ ++++..+...+ +. .+.++.||+|+|--
T Consensus 138 l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 138 IMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 344444555554 7899888888887643 56666655432 32 58899999999874
No 331
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.36 E-value=0.052 Score=54.49 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=27.4
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~ 103 (352)
.|+|||+|..|+-+|..+++. |.+|.|+++.
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~ 37 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKV 37 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 599999999999999999876 5799999875
No 332
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.32 E-value=0.076 Score=53.53 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEECCChHHHHHHHHHH----hCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~----~~g~~Vtvv~~~ 103 (352)
.|+|||+|..|+-+|..++ +.|.+|.|+++.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 3899999999999999998 678999998864
No 333
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.24 E-value=0.022 Score=52.69 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
....|+|||+|..|..+|..|.+.|.+|++++|.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3456999999999999999999999999999988
No 334
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.17 E-value=0.011 Score=48.04 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=55.5
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652 74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 153 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~ 153 (352)
|+|+|+|.+|+-+|..|.+.|.+|+++.+.+ . + +.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~------------~-~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-R------------L-EAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-H------------H-HHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-c------------H-HhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999998753 1 1 337778999887652111211 11122
Q ss_pred CC--CEEEcCEEEEccCCCCCchhhhh
Q 018652 154 DG--STIDADTIVIGIGAKPTVSPFER 178 (352)
Q Consensus 154 ~g--~~i~~D~vi~a~G~~p~~~~~~~ 178 (352)
.. ..-++|.||+|+-.....+.++.
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~ 86 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQS 86 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHHH
Confidence 21 23569999999876554444443
No 335
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.17 E-value=0.058 Score=58.65 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.|+|||+|..|+-.|...++.|.+|.++++.
T Consensus 411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~ 441 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKE 441 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence 6999999999999999999999999999876
No 336
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.15 E-value=0.036 Score=52.72 Aligned_cols=96 Identities=23% Similarity=0.418 Sum_probs=65.3
Q ss_pred EEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc--cccCHHHH---------HHHHHHHHhCCcEEEcCCeEEEEE
Q 018652 74 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--RLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNLE 140 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~--~~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~~i~ 140 (352)
++|+|+|..|+..|..+++. ..+++++...+.... ......+. ........+.++++..++.+.+++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 47999999999999998885 467777665532211 00111110 011111146789999999999997
Q ss_pred ecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652 141 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 141 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 174 (352)
... + .+.+.+| ++.+|.+++++|.+|...
T Consensus 81 ~~~--~--~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 PEN--K--VVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred CCC--C--EEEECCC-cccccEEEEcCCCcccCC
Confidence 532 2 5677788 899999999999999764
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.15 E-value=0.032 Score=53.82 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHHHHhC--CCcEEEEecCCccc------cccc----C-H-HHHHH-HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652 86 VAAAAVGW--KLDTTIIFPENHLL------QRLF----T-P-SLAQR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 150 (352)
Q Consensus 86 ~A~~l~~~--g~~Vtvv~~~~~~~------~~~~----~-~-~~~~~-l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v 150 (352)
+|..|+++ ..+|+|+++++.+. +... . + +.... ..+.+++.|++++.++.|++++.. +..+ .+
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~-~~~v-~~ 79 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDE-RQTV-VV 79 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECC-CCEE-EE
Confidence 45667665 46799999887431 1110 1 1 11111 234458889999999999999753 2222 23
Q ss_pred EcC-CCCEEE--cCEEEEccCCCCCchh
Q 018652 151 KLE-DGSTID--ADTIVIGIGAKPTVSP 175 (352)
Q Consensus 151 ~~~-~g~~i~--~D~vi~a~G~~p~~~~ 175 (352)
... +++++. +|.+|+|||.+|+...
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~ 107 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVPN 107 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCCC
Confidence 322 345677 9999999999987543
No 338
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.11 E-value=0.081 Score=52.66 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=27.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-.|..+++. .+|.|+++.
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~ 39 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG 39 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEecc
Confidence 3699999999999999999886 789998865
No 339
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.029 Score=54.72 Aligned_cols=89 Identities=19% Similarity=0.125 Sum_probs=60.8
Q ss_pred HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652 63 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 142 (352)
Q Consensus 63 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~ 142 (352)
.+...+ .++++.|+|.|.+|+.+|..|.+.|.+|++.++.+... . . ...+.+++.|+.+..+...
T Consensus 7 ~~~~~~-~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~----~-~~~~~l~~~gi~~~~~~~~------ 71 (458)
T PRK01710 7 EFKKFI-KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---L----G-EVSNELKELGVKLVLGENY------ 71 (458)
T ss_pred HHhhhh-cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---c----h-HHHHHHHhCCCEEEeCCCC------
Confidence 333433 36899999999999999999999999999988764211 1 1 1123367788888754210
Q ss_pred CCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 143 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 143 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
.. . .-.+|+||+++|..|+.+.+.
T Consensus 72 -~~---~-------~~~~dlVV~Spgi~~~~p~~~ 95 (458)
T PRK01710 72 -LD---K-------LDGFDVIFKTPSMRIDSPELV 95 (458)
T ss_pred -hH---H-------hccCCEEEECCCCCCCchHHH
Confidence 00 0 124899999999998766543
No 340
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.021 Score=55.56 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=58.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~ 152 (352)
+|.|+|.|.+|+.+|..|.++|.+|++.++.+... .......|++.|++++.+.... .+ .+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~--------~~~~~~~l~~~gi~~~~g~~~~-~~--------~~~- 63 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE--------LLERQQELEQEGITVKLGKPLE-LE--------SFQ- 63 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh--------hHHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence 58999999999999999999999999988765321 1122344677899998764221 00 000
Q ss_pred CCCCEEEcCEEEEccCCCCCchhhh
Q 018652 153 EDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 153 ~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
. ..-.+|.||.++|..|+.+++.
T Consensus 64 -~-~~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 64 -P-WLDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred -H-HhhcCCEEEECCCCCCCCHHHH
Confidence 0 0134799999999998876543
No 341
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.06 E-value=0.009 Score=58.49 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 108 (352)
..++|+|||+|.+|+.+|..|.+.|.+|+|++.++++-.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 467899999999999999999999999999998876533
No 342
>PRK12839 hypothetical protein; Provisional
Probab=96.05 E-value=0.092 Score=52.66 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCCC-EE-EcCEEEEccCCC-CCchhhh
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TI-DADTIVIGIGAK-PTVSPFE 177 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g~-~i-~~D~vi~a~G~~-p~~~~~~ 177 (352)
+.+..++.|++++.++.++++..++++++..|.. .+++ .+ .++.||+|+|-- -|.++++
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 4555677899999999999987555677777654 3444 23 458999999754 4444443
No 343
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.96 E-value=0.036 Score=53.09 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.|+|||+|..|+-+|..|.+. .+|+|+++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~ 38 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG 38 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence 699999999999999999987 899999877
No 344
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.94 E-value=0.1 Score=51.63 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.-.|+|||+| .|+-+|..+++.|.+|.|+++.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 3469999999 9999999999999999999855
No 345
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=95.86 E-value=0.069 Score=50.07 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC------CCcEEEEecCCcc-------------------------------------
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL------------------------------------- 106 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~~~~------------------------------------- 106 (352)
..-.|+|||+|+.|+..|-.|.++ ..+|.+++....+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 445799999999999999888654 2456666655110
Q ss_pred -----------ccc--cc---------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC----------
Q 018652 107 -----------LQR--LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------- 154 (352)
Q Consensus 107 -----------~~~--~~---------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---------- 154 (352)
.+. .+ -..+..++-+..++.||+++++....++-.++++.+..|-+.|
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 000 00 1245677888889999999999999999888888888887654
Q ss_pred -----CCEEEcCEEEEccCCCCCc
Q 018652 155 -----GSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 155 -----g~~i~~D~vi~a~G~~p~~ 173 (352)
|-++.+..-|.|-|.+...
T Consensus 235 d~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred ccccccceecceeEEEeccccchh
Confidence 2367788899999987653
No 346
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.85 E-value=0.14 Score=51.12 Aligned_cols=32 Identities=41% Similarity=0.383 Sum_probs=28.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 46899999999999999999999999988865
No 347
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.83 E-value=0.013 Score=56.83 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~ 106 (352)
++|+|||||.+|+-+|..|++.| .+|+|++.++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL 37 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 47999999999999999999987 899999988665
No 348
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.79 E-value=0.021 Score=53.37 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=57.6
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccc-------------------------------------------
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ------------------------------------------- 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~------------------------------------------- 108 (352)
.++.||.|+..+.+|..|.+.+ .++.++++.+.+..
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 77888886632200
Q ss_pred -----cc--cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC--cEEEEEcC----CCCEEEcCEEEEccCCCCCch
Q 018652 109 -----RL--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKLE----DGSTIDADTIVIGIGAKPTVS 174 (352)
Q Consensus 109 -----~~--~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~--~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~ 174 (352)
.. .-.++.++++-..++.+-.+..+.+|++|+...++ ....|.+. +++.+.|+.||+++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 00 00122333333333444447779999999865443 34456652 346899999999999888754
No 349
>PRK07233 hypothetical protein; Provisional
Probab=95.74 E-value=0.013 Score=56.25 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
+|+|||+|..|+.+|..|++.|.+|+|+++.+++-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 58999999999999999999999999999887653
No 350
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.014 Score=56.14 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=33.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
+||+|+|+|..|+.+|..|++.|++||++++++++-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 589999999999999999999999999999987653
No 351
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.71 E-value=0.17 Score=50.63 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
-.|+|||+|..|+-.|..+++.|.+|.|+++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999988654
No 352
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.68 E-value=0.12 Score=51.84 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEc-CEEEEccCCC-CCchhhhh
Q 018652 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER 178 (352)
Q Consensus 119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~-D~vi~a~G~~-p~~~~~~~ 178 (352)
+.+.+++.||++++++.++++..+ ++++..|... +|+ .+.+ ..||+|+|-- -|.+++++
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~ 286 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK 286 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence 444567789999999999998743 5777776443 343 3555 5899998754 44444443
No 353
>PTZ00367 squalene epoxidase; Provisional
Probab=95.67 E-value=0.022 Score=56.88 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
..+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3479999999999999999999999999999875
No 354
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.037 Score=53.67 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh--CCcEEEcCCeEEEEEecCCCcE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV 147 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~--~gV~~~~~~~v~~i~~~~~~~~ 147 (352)
.+++++|+|.|-+|+.+|..|+++|.+|++.+..+.. +. .+.+++ .|++++.+... ..
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~--------~~- 63 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLK--------DA- 63 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCC--------HH-
Confidence 3678999999999999999999999999998765431 11 122343 47777654310 00
Q ss_pred EEEEcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652 148 AAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178 (352)
Q Consensus 148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 178 (352)
..-.+|+||+++|..|..+.++.
T Consensus 64 --------~~~~~d~vv~spgi~~~~p~~~~ 86 (445)
T PRK04308 64 --------LDNGFDILALSPGISERQPDIEA 86 (445)
T ss_pred --------HHhCCCEEEECCCCCCCCHHHHH
Confidence 01258999999999998776543
No 355
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.067 Score=49.55 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCCeE-E
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASI-K 137 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~---------~~~~~~~~l~~~l~~~gV~~~~~~~v-~ 137 (352)
...+|.|||+|+.|+-.|..|.++ +.+|+++++.+.++.-. .-+.+-+.+.+.++.....+..|..| +
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~ 98 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR 98 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence 344899999999999999998874 68899999887664310 11234456777778888888877544 1
Q ss_pred EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.+ .+++ -+-.+|+||++.|...+
T Consensus 99 dv-----------sl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 99 DV-----------SLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred cc-----------cHHH-HhhcccEEEEEecCCCC
Confidence 11 2211 13468999999998654
No 356
>PLN02268 probable polyamine oxidase
Probab=95.56 E-value=0.018 Score=55.59 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=33.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 108 (352)
.+|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999998876543
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.53 E-value=0.02 Score=60.50 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=23.8
Q ss_pred CCcEEeCCCCCCCCCCEEEecccccc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAF 210 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~ 210 (352)
-|+|.||.+++|++||+||+|||+..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~ 386 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACV 386 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCc
Confidence 47999999999999999999999764
No 358
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.51 E-value=0.046 Score=53.02 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=56.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|+|+|-+|+.+|..|++.|.+|++.++..... . ...+.+++.|+++..+.....+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~-----~----~~~~~l~~~g~~~~~~~~~~~~---------- 64 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSE-----N----PEAQELLEEGIKVICGSHPLEL---------- 64 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccc-----h----hHHHHHHhcCCEEEeCCCCHHH----------
Confidence 46889999999999999999999999999987543211 1 1223456678888654311110
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
+. -.+|.||.++|..++.+++
T Consensus 65 --~~----~~~d~vV~s~gi~~~~~~~ 85 (447)
T PRK02472 65 --LD----EDFDLMVKNPGIPYTNPMV 85 (447)
T ss_pred --hc----CcCCEEEECCCCCCCCHHH
Confidence 00 0479999999998876654
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.50 E-value=0.19 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~ 45 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKA 45 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 46999999999999999999999999998864
No 360
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.48 E-value=0.049 Score=52.30 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 150 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v 150 (352)
+++|+|+|-|-+|+.+|..|.++|.+|++.+.++.. .. .....+...+|++..+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~--------~~~~~~~~~~i~~~~g~~~~------------- 64 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG--------LAAQPLLLEGIEVELGSHDD------------- 64 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc--------hhhhhhhccCceeecCccch-------------
Confidence 899999999999999999999999999999866533 11 11123445678877654211
Q ss_pred EcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652 151 KLEDGSTIDADTIVIGIGAKPTVSPFER 178 (352)
Q Consensus 151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 178 (352)
-..-.+|.||.++|..|+.++++.
T Consensus 65 ----~~~~~~d~vV~SPGi~~~~p~v~~ 88 (448)
T COG0771 65 ----EDLAEFDLVVKSPGIPPTHPLVEA 88 (448)
T ss_pred ----hccccCCEEEECCCCCCCCHHHHH
Confidence 013568999999999998876543
No 361
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.47 E-value=0.02 Score=56.30 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
..+++|||+|..|+-+|..|++.|.+|+|+++...+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 467999999999999999999999999999987554
No 362
>PRK07208 hypothetical protein; Provisional
Probab=95.47 E-value=0.021 Score=55.85 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
..++|+|||+|.+|+-+|..|.+.|.+|+|+++++++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4568999999999999999999999999999987654
No 363
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.44 E-value=0.027 Score=46.32 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 101 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~ 101 (352)
.+++++|||||.+|...+..|.+.|.+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999994
No 364
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.43 E-value=0.015 Score=44.12 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+++++|||||..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 58999999999999999999999999999997753
No 365
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.25 E-value=0.13 Score=51.06 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
-..+....++.|..++.++.|+++.-. ++....|++..|. +++..+|-|+|+=.
T Consensus 190 C~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 190 CQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence 345555668899999999999999754 3334488888885 99999999999743
No 366
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.21 E-value=0.04 Score=53.73 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=56.5
Q ss_pred cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE
Q 018652 69 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 147 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~ 147 (352)
...+++.|+|-|-+|+. +|..|.++|.+|++.+.... +. . +.|++.|+++..+....
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~---------- 62 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAE---------- 62 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHH----------
Confidence 45678999999999999 79999999999999876542 11 2 23667788887532100
Q ss_pred EEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652 148 AAVKLEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
. + -.+|+||+++|..|+.+.+
T Consensus 63 -~--~-----~~~d~vv~spgi~~~~~~~ 83 (461)
T PRK00421 63 -N--I-----KDADVVVYSSAIPDDNPEL 83 (461)
T ss_pred -H--C-----CCCCEEEECCCCCCCCHHH
Confidence 0 0 1489999999999876654
No 367
>PRK08275 putative oxidoreductase; Provisional
Probab=95.20 E-value=0.026 Score=56.42 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=22.5
Q ss_pred CcEEeCCCCCCCCCCEEEeccccc
Q 018652 186 GGIQVDGQFRTRMPGIFAIGDVAA 209 (352)
Q Consensus 186 g~i~vd~~~~t~~~~Iya~GD~a~ 209 (352)
|+|.||..++|++|++||+|||+.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~ 380 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMAS 380 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCC
Confidence 689999999999999999999975
No 368
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.20 E-value=0.031 Score=47.10 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 108 (352)
+|.|||+|..|..+|..++..|.+|+++++++.-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~ 36 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE 36 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 589999999999999999999999999998875543
No 369
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.18 E-value=0.23 Score=46.85 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEE
Q 018652 82 IGMEVAAAAVGWKLDTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STID 159 (352)
Q Consensus 82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~ 159 (352)
.--++-..+.++|.... .+++.++.|.. -..++.+.+...+++.||++++++.|+.|+. + . ..+.+.++ ..+.
T Consensus 55 ~~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~-~-~~v~~~~~~~~~~ 129 (376)
T TIGR03862 55 DAVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--G-T-LRFETPDGQSTIE 129 (376)
T ss_pred CHHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--C-c-EEEEECCCceEEe
Confidence 35566777888886544 35566777632 3457888999999999999999999999932 2 2 35565433 4699
Q ss_pred cCEEEEccCCCC--Cc-------hhhhhcCCcc
Q 018652 160 ADTIVIGIGAKP--TV-------SPFERVGLNS 183 (352)
Q Consensus 160 ~D~vi~a~G~~p--~~-------~~~~~~gl~~ 183 (352)
+|.||+|+|..+ .+ .+++++|...
T Consensus 130 a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 130 ADAVVLALGGASWSQLGSDGAWQQVLDQRGVSV 162 (376)
T ss_pred cCEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence 999999999864 22 3566666553
No 370
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.15 E-value=0.029 Score=55.19 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
++|+|||+|..|+-+|..|++.|.+|+|+++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57999999999999999999999999999988655
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.11 E-value=0.069 Score=49.06 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+++|+|+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999998853
No 372
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.06 E-value=0.031 Score=54.38 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHhC----CCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~ 106 (352)
++|+|||||.+|+-+|..|.+. |.+|+|++.++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5799999999999999999998 9999999988765
No 373
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.02 E-value=0.17 Score=46.61 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..++.|+|+|.+|.-+|..|++.|.+|+++.|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 357999999999999999999999999999875
No 374
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.94 E-value=0.029 Score=55.36 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.6
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 589999999999999999999999999988654
No 375
>PLN02612 phytoene desaturase
Probab=94.88 E-value=0.12 Score=51.80 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 169 (352)
..+.+.+.+.+++.|.++++++.|++|..++++.+..+.+.+|+++++|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 345677777788899999999999999876666666788888999999999999864
No 376
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.82 E-value=0.051 Score=46.73 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 102 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~ 102 (352)
.+++++|||||.+|...+..|.+.|.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 588999999999999999999999999999965
No 377
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.79 E-value=0.039 Score=53.59 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
+|+|||+|..|+-+|..|.+.|.+|+|+++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999999999999999999999999988654
No 378
>PLN02576 protoporphyrinogen oxidase
Probab=94.76 E-value=0.046 Score=53.75 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ 108 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~ 108 (352)
..+|+|||||.+|+-+|..|.+. |.+|+|++.++++-.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 45799999999999999999999 999999999876643
No 379
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.72 E-value=0.085 Score=48.48 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=53.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~ 152 (352)
++.|+|+|.+|.-++..|.+.|.+|+++.|.++ .+.+++.|+.+..... ... ......
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~ 59 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA 59 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence 789999999999999999999988888877643 2446777888876544 100 001111
Q ss_pred CC-CCEEEcCEEEEccCCCCCc
Q 018652 153 ED-GSTIDADTIVIGIGAKPTV 173 (352)
Q Consensus 153 ~~-g~~i~~D~vi~a~G~~p~~ 173 (352)
.+ ...-++|.||+++=.-...
T Consensus 60 ~~~~~~~~~Dlviv~vKa~q~~ 81 (307)
T COG1893 60 TDAEALGPADLVIVTVKAYQLE 81 (307)
T ss_pred cChhhcCCCCEEEEEeccccHH
Confidence 21 2234799999997655443
No 380
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.70 E-value=0.054 Score=53.97 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|+|.||.+++|++||+||+|+|+.... .|. ...-.....+...|+.+++++..
T Consensus 357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~--hGa~~l~~~sl~~~~v~G~~ag~~aa~ 411 (541)
T PRK07804 357 CGGVVTDVYGRTSVPGLYAAGEVACTGV--HGANRLASNSLLEGLVVGERAGAAAAA 411 (541)
T ss_pred CCCEEECCCCcccCCCeEEccccccccc--CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999974211 011 00011334466677777777753
No 381
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.67 E-value=0.16 Score=46.99 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 112 ~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
+..+...+.+.+.+.|++++.+++|+++... ++.+..|.+.+| .+.+|.||+|+|.-.
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 3466777888889999999999999999854 455666777777 799999999999654
No 382
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.64 E-value=0.059 Score=53.25 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|||.+|.+.+|++||+||+|+|+.....-.++.. -.....+...|+.|++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999742110001111 11445577788888888763
No 383
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.63 E-value=0.048 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.6
Q ss_pred cEEeC-------------CCCCCCCCCEEEecccccc
Q 018652 187 GIQVD-------------GQFRTRMPGIFAIGDVAAF 210 (352)
Q Consensus 187 ~i~vd-------------~~~~t~~~~Iya~GD~a~~ 210 (352)
||.|| ++++|++||+||+|||+..
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~ 407 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGG 407 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCC
Confidence 58999 9999999999999999753
No 384
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.62 E-value=0.048 Score=48.86 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~ 103 (352)
...+|+|+|.|-+|.++|..|++.| .++++++..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5678999999999999999999999 679998865
No 385
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.58 E-value=0.046 Score=53.28 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHhC------CCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~~~~ 106 (352)
++|+|||||.+|+-+|..|.+. +.+|+|++.++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 4799999999999999999986 3789999988765
No 386
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.57 E-value=0.13 Score=50.44 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|+|.|-+|+.+|..|.+.|.+|++.++... . ..+.+++.||+++.+... .. .
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--------~----~~~~l~~~gi~~~~~~~~-------~~---~ 71 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--------A----RHKLIEVTGVADISTAEA-------SD---Q 71 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--------H----HHHHHHhcCcEEEeCCCc-------hh---H
Confidence 467899999999999999999999999988775321 1 112345568888654210 00 0
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
.-.+|+||.++|..|+.+.+.
T Consensus 72 -------~~~~d~vV~Spgi~~~~p~~~ 92 (473)
T PRK00141 72 -------LDSFSLVVTSPGWRPDSPLLV 92 (473)
T ss_pred -------hcCCCEEEeCCCCCCCCHHHH
Confidence 124799999999998876543
No 387
>PRK09077 L-aspartate oxidase; Provisional
Probab=94.50 E-value=0.066 Score=53.29 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=37.4
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|||.+|.+.+|++||+||+|+|+.....-.++.. -.....|.-.|+.|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111001111 12445577778888888764
No 388
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.12 Score=50.88 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=55.5
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~ 148 (352)
..+++++|+|.|.+|+.++..|...|.+|++.+..+ . .. +.+++.|+.+..+.. . .
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~---------~---~~-~~l~~~g~~~~~~~~----~---~---- 65 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP---------D---AL-RPHAERGVATVSTSD----A---V---- 65 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH---------H---HH-HHHHhCCCEEEcCcc----h---H----
Confidence 467899999999999999999999999999976432 1 12 225556887764321 0 0
Q ss_pred EEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 149 AVKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
...-.+|.||.++|..++.+.++
T Consensus 66 ------~~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 66 ------QQIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred ------hHhhcCCEEEECCCCCCCCHHHH
Confidence 00124799999999998876543
No 389
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.46 E-value=0.062 Score=48.69 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 110 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~ 110 (352)
+.+|||+|+.|.-+|..++++|.+|-+|++++++....
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 57899999999999999999999999999998775543
No 390
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.44 E-value=0.07 Score=53.64 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=34.7
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|+|.||.+++|++||+||+|+|+.....-.++.. -.....|.-.|++|++++.
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa 411 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLG-SNSLAELVVFGRVAGEQAA 411 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccccCCCCCcc-hhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999742111000100 1123346666777776665
No 391
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.43 E-value=0.055 Score=52.02 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~ 106 (352)
++++|||||.+|+-.|..|.+.+ .+++|+++++++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999999 899999998654
No 392
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.42 E-value=0.075 Score=52.23 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|+|.+|.+.||++||+||+|+|+.....-.++. .-.....|.-.|+.+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl-~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRL-ASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCccccc-chhHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999974211100010 011345577788888888764
No 393
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.39 E-value=0.25 Score=49.25 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
...|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~ 38 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA 38 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc
Confidence 357999999999999999999999999999865
No 394
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=94.35 E-value=0.061 Score=50.85 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=30.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
+++|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 5899999999999999999999999999987544
No 395
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.35 E-value=0.056 Score=44.41 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
+|.|+|+|..|.-+|..|++.|.+|+++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999998754
No 396
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.25 E-value=0.098 Score=44.27 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=46.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------ccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 145 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~ 145 (352)
+|.|+|.|++|+-+|..|++.|.+|+.++.++... .....+.+.+.+.+.++..+..+..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~----------- 70 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDI----------- 70 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEH-----------
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhh-----------
Confidence 78999999999999999999999999998764321 112456667777776655544443210
Q ss_pred cEEEEEcCCCC-EEEcCEEEEccCCC
Q 018652 146 RVAAVKLEDGS-TIDADTIVIGIGAK 170 (352)
Q Consensus 146 ~~~~v~~~~g~-~i~~D~vi~a~G~~ 170 (352)
.+ .-.+|.+++|.+.-
T Consensus 71 ---------~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 71 ---------EEAIKDADVVFICVPTP 87 (185)
T ss_dssp ---------HHHHHH-SEEEE----E
T ss_pred ---------hhhhhccceEEEecCCC
Confidence 01 24689999998754
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.22 E-value=0.23 Score=45.40 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=28.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 102 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~ 102 (352)
++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 689999999999999999999999999876
No 398
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.09 E-value=0.064 Score=52.58 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~ 103 (352)
.|+|||||.+|+.+|..|++. |.+|+|+++.
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 589999999999999999997 8999999985
No 399
>PLN02529 lysine-specific histone demethylase 1
Probab=94.07 E-value=0.08 Score=54.30 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 105 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~ 105 (352)
.++|+|||+|..|+.+|..|++.|.+|++++.+++
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 46899999999999999999999999999998643
No 400
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=94.05 E-value=0.073 Score=52.13 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
+++|||+|..|+-+|..|.+.|.+|+++++++.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 4899999999999999999999999999988755
No 401
>PLN03000 amine oxidase
Probab=94.03 E-value=0.14 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
.++|+|||+|+.|+.+|..|.+.|.+|++++.++++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 478999999999999999999999999999987544
No 402
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.02 E-value=0.25 Score=48.02 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-----EEEcCEEEEccCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 169 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~ 169 (352)
..+.+.+.+.+++.|.++++++.|++|...+++.+..+.+.+|+ ++.+|.||++++.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667778888889999999999999976556666677776665 7999999999875
No 403
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.00 E-value=0.25 Score=48.58 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
..+.+.+.+.+++.|+++++++.|++|... ++.+..|++.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 356677888899999999999999999754 466778889999999999999998753
No 404
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.99 E-value=0.13 Score=49.50 Aligned_cols=55 Identities=31% Similarity=0.456 Sum_probs=39.3
Q ss_pred CcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241 (352)
Q Consensus 186 g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 241 (352)
|||.||.+.||+.|++||+|.|+.....--++.+. .+.-.+.-.|..+|+.|...
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLAS-NSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLAS-NSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccccchhhhh-hhHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999754322122111 12234667788888888753
No 405
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=93.99 E-value=0.73 Score=43.04 Aligned_cols=96 Identities=31% Similarity=0.407 Sum_probs=63.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT 112 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~ 112 (352)
....++|||+|+-|.-.|...+++|.+...++.+..+-..+ ++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 45789999999999999999999999998888753221100 00
Q ss_pred ------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCC
Q 018652 113 ------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK 170 (352)
Q Consensus 113 ------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~ 170 (352)
..+..-+...+++++|.++.+. -++. +.....+...||+ .+++..+|+|||..
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~--gsf~---~p~~V~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF--GSFL---DPNKVSVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee--Eeec---CCceEEEeccCCCceEEeeeeEEEEeCCc
Confidence 1122334455677777777664 2332 1222345555553 68999999999984
No 406
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.99 E-value=0.085 Score=50.10 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 109 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~ 109 (352)
...+|+|+|+|++|+-.|..|.+.|.+|++++.++++..|
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 4678999999999999999999999999999988776544
No 407
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.98 E-value=0.1 Score=50.93 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|+|.+|.+.||++||+||+|+|+.....-.++.. -.....+...|+.+++++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999742111011111 11334466778888887763
No 408
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.91 E-value=0.08 Score=52.11 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
.++|||+|..|+-+|..|++.|.+|+|+++++.+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 4899999999999999999999999999998654
No 409
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.91 E-value=0.1 Score=52.09 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCC-c-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPL-K-MYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~-~-~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.+|.+++|++||+||+|+|+.... . ..+.. ....|...|++|++++.
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~----sl~~a~v~Gr~Ag~~aa 400 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGN----ALADTQVFGAIAGKSAA 400 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchh----hhhhhHHHHHHHHHHHH
Confidence 4899999999999999999999975321 1 11111 23346666777766665
No 410
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.90 E-value=0.06 Score=50.27 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
++.|+|.|++|+-.|..|++.|++|+.++-.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999987653
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.098 Score=47.59 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 108 (352)
++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~ 42 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT 42 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 5899999999999999999999999999998876554
No 412
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.73 E-value=0.36 Score=46.78 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
.++.+.+.+.++..|.++++++.|++|..++++.+..|++.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 367778888889999999999999999866556777899999999999999998888776
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.24 Score=48.42 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=53.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++++|+|.|.+|..+|..|.+.|.+|++.+.++... .+. ..+ |++ ++.+..+. ...
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~----~~~----~~~-l~~-~~~~~~~~-------~~~----- 64 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVE----ARE----VGA-LAD-AALLVETE-------ASA----- 64 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCccc----chH----HHH-Hhh-cCEEEeCC-------CCh-----
Confidence 47899999999999999999999999999987553211 111 112 444 33333221 000
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
...-.+|+||.++|..|+.+.++
T Consensus 65 -----~~~~~~d~vV~SpgI~~~~p~~~ 87 (468)
T PRK04690 65 -----QRLAAFDVVVKSPGISPYRPEAL 87 (468)
T ss_pred -----HHccCCCEEEECCCCCCCCHHHH
Confidence 00124899999999998876543
No 414
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=93.60 E-value=1.6 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=27.6
Q ss_pred CeEEEECCChHHHHHHHHHHhC----CCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~ 103 (352)
..|+|||||.+|...|.-|.++ |.+|.++++.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 3699999999999999988653 6889999887
No 415
>PLN02487 zeta-carotene desaturase
Probab=93.59 E-value=0.11 Score=51.92 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
++|+|||+|..|+-+|..|.+.|++|+++++.+.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 48999999999999999999999999999987755
No 416
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.51 E-value=0.18 Score=41.36 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=29.6
Q ss_pred HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 66 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 66 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
..+-.+|+++|+|-|..|--+|..|+.+|.+|++.+..|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 345589999999999999999999999999999998754
No 417
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.47 E-value=0.12 Score=53.39 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
.++|+|||+|..|+.+|..|.+.|.+|++++.+.++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 467999999999999999999999999999987544
No 418
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.45 E-value=0.13 Score=50.98 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=35.9
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|+|.+|.+.+|++||+||+|+|+.....-.++.. -.....+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111001111 11333466677777777653
No 419
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.44 E-value=0.54 Score=43.31 Aligned_cols=100 Identities=25% Similarity=0.392 Sum_probs=65.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------------ccc----------------------cc----
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------LQR----------------------LF---- 111 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------~~~----------------------~~---- 111 (352)
-..+|||||--|+..|...++.|.++-+++..-.+ +.. .+
T Consensus 21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ 100 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV 100 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence 35789999999999999999999999888755111 000 00
Q ss_pred -----CH---HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652 112 -----TP---SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 112 -----~~---~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~ 176 (352)
+. .+....++.|.+.+|+++.+. .++. +++.+ .|+..||+ .+.+..+++|+|.+|..+-.
T Consensus 101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~--a~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI 170 (478)
T KOG0405|consen 101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGR--ARFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIPNI 170 (478)
T ss_pred HHhhhhHHHHHHHHHHHhhccccceeEEeee--EEEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCCCC
Confidence 00 112234455666778887764 2332 23333 56667774 36899999999999865533
No 420
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.41 E-value=0.49 Score=44.06 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999998763
No 421
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.41 E-value=0.19 Score=48.87 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=53.1
Q ss_pred eEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652 73 KVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 151 (352)
Q Consensus 73 ~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~ 151 (352)
++.++|-|-+|+. +|..|.++|.+|++.+.... + ..+.|++.|+++..+.... .
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~-----------~-- 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAE-----------N-- 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHH-----------H--
Confidence 4789999999998 99999999999999875531 1 1234677788887542110 0
Q ss_pred cCCCCEEEcCEEEEccCCCCCchhh
Q 018652 152 LEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 152 ~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
+ -.+|+||+++|..|+.+.+
T Consensus 56 ~-----~~~d~vV~spgi~~~~p~~ 75 (448)
T TIGR01082 56 L-----DDADVVVVSAAIKDDNPEI 75 (448)
T ss_pred C-----CCCCEEEECCCCCCCCHHH
Confidence 0 1389999999999876654
No 422
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=93.40 E-value=0.57 Score=42.58 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHhCCcEEEcCCeEEEEEecCCC---cEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc
Q 018652 118 RYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184 (352)
Q Consensus 118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~---~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~ 184 (352)
.+-+.++..|-+++++.++..+..+.++ ....|....++++++..++.|+|...+ ...+.+|.+.+
T Consensus 201 s~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 201 SFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 3445578888899999999888755442 223455555789999999999998765 34445555544
No 423
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.35 E-value=0.11 Score=52.16 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcc-cccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|+|.+|.+.+|++||+||+|+|+.... .|.. .--.....+.-.|+.|++++.
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~--hGanrl~g~sl~~~~v~G~~ag~~aa 410 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGL--HGANRLGSNSLAELVVFGRRAGEAAA 410 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCc--CCCccccchhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999974211 1110 001133446666777777665
No 424
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=93.35 E-value=0.66 Score=44.21 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 168 (352)
.++..+.+-+++.|-++.++..|.+|.-+ ++...+|.++||+++.+..|+.-++
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 34455556668899999999999999855 5888899999999999977666544
No 425
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.31 E-value=0.15 Score=44.29 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.+++|+|||||.+|..=+..|.+.|.+|||+.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999764
No 426
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.29 E-value=0.4 Score=47.29 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
..+.+.+.+.+++.|+++++++.|++|... ++.+..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 356778888889999999999999999854 456667888999899999999998753
No 427
>PLN02568 polyamine oxidase
Probab=93.27 E-value=0.13 Score=51.10 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-----CcEEEEecCCcc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHL 106 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtvv~~~~~~ 106 (352)
...+|+|||+|..|+-+|..|.+.| .+|+|++++.++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3468999999999999999999887 889999987654
No 428
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.24 E-value=0.2 Score=40.06 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN 104 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~ 104 (352)
.+++++|+|+|-+|-.++..|...|.+ |+++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 689999999999999999999999987 99988753
No 429
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.08 E-value=0.11 Score=48.65 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=32.1
Q ss_pred CccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCC
Q 018652 1 MIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT 37 (352)
Q Consensus 1 ~~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~ 37 (352)
++++++|.+|+.++ ..+.+++|+++.+|.||||||..
T Consensus 128 i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 128 IRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred EEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 46788999999885 78899999889999999999943
No 430
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.05 E-value=0.12 Score=50.91 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPEN 104 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~ 104 (352)
..|+|||||.+|+.+|..|+++ +.+|+|+++..
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 4799999999999999999985 78999999764
No 431
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.01 E-value=0.3 Score=47.16 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=52.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK 151 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~ 151 (352)
++.|+|-|-+|+.+|..|.++|.+|++.+..+.... + .....++ ..|++++.+.... .+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~----~~~~~~~~~~gi~~~~g~~~~-----------~~- 60 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----E----PSMGQLRLNEGSVLHTGLHLE-----------DL- 60 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----h----hHHHHHhhccCcEEEecCchH-----------Hh-
Confidence 478999999999999999999999999876543111 1 1111223 3588887653210 01
Q ss_pred cCCCCEEEcCEEEEccCCCCCchhh
Q 018652 152 LEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 152 ~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
-.+|.||+++|..|+.+.+
T Consensus 61 ------~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 61 ------NNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred ------ccCCEEEECCCCCCCCHHH
Confidence 2479999999998876654
No 432
>PLN02612 phytoene desaturase
Probab=92.97 E-value=0.15 Score=51.07 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
.+++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4578999999999999999999999999999987653
No 433
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.97 E-value=0.15 Score=51.08 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCcEEeCCCCCCC-CCCEEEecccccc--CC-ccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTR-MPGIFAIGDVAAF--PL-KMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~-~~~Iya~GD~a~~--~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|+|.||.+.+|+ +||+||+|+|+.. .. ..++.. ....+.-.|+.|++++.
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggn----sl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSN----SLLDTLVFGQVTGRTVV 400 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCCCcccccch----HHHHHHHHHHHHHHHHH
Confidence 4899999999995 9999999999752 11 111211 33345666666666654
No 434
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.91 E-value=0.24 Score=44.84 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=30.7
Q ss_pred cCCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEec
Q 018652 69 EKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFP 102 (352)
Q Consensus 69 ~~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~ 102 (352)
..+++++|+|.|. .|.-+|..|.+.|..||++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3789999999886 999999999999999999876
No 435
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.77 E-value=0.19 Score=50.47 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=34.6
Q ss_pred CCcEEeCCCCC----CCCCCEEEeccccccCCccCCc-ccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFR----TRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~----t~~~~Iya~GD~a~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|++.||..+| |++||+||+|+|+.... .|. +..-.....|...|+.|++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHH
Confidence 48999999999 99999999999975211 111 0001133446666777776664
No 436
>PLN02815 L-aspartate oxidase
Probab=92.66 E-value=0.2 Score=50.37 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.+|.+.+|++||+||+|+|+.....-.++.. -.....+.-.|+.|++.+.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111000111 1134456677777777765
No 437
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.64 E-value=0.15 Score=47.90 Aligned_cols=53 Identities=30% Similarity=0.540 Sum_probs=42.3
Q ss_pred HhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch-hhhhcC
Q 018652 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-PFERVG 180 (352)
Q Consensus 124 ~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~~~~~g 180 (352)
...||-+..+..++.++.. +. .|.+.||.+|.+|-++++||.+|... .+++++
T Consensus 268 ~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~ 321 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGVRPKKLQVFEEAS 321 (659)
T ss_pred ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCcCcccchhhhhcC
Confidence 5578999999999999743 22 67899999999999999999999753 345444
No 438
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.60 E-value=0.21 Score=48.26 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~--~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
-|+|.||...||+.||+||+|.|+. ..... +. .-.....+.-.|+.|++++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~n--rl-~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGAN--RL-ASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCCccc--cc-hhHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999974 22110 10 011344577778888888753
No 439
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.52 E-value=0.22 Score=50.32 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~--~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|+|.+|...+|++|++||+|+|+..... .++.. ....+.-.|+.|++++.
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~----sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGAN----SLLSAIADGYFALPFTI 422 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchhH----HHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999752211 11111 33345555666666554
No 440
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.37 E-value=0.22 Score=50.13 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcc-cccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.||.+.+|++||+||+|+|+... .|.. ..-.....|.-.|+.+++++.
T Consensus 355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999997421 1110 001133345555666665554
No 441
>PLN02676 polyamine oxidase
Probab=92.29 E-value=0.23 Score=48.84 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCccc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLL 107 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~ 107 (352)
...+|+|||+|..|+-+|..|++.|. +|+++++++++-
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 35689999999999999999999997 699999886653
No 442
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.29 E-value=0.26 Score=44.79 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
++|.|||+|..|..+|..+++.|.+|+++++++..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l 39 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEAL 39 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 679999999999999999999999999998876433
No 443
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.23 E-value=0.35 Score=45.81 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 171 (352)
..+...+.+.+++ |++++.++.|.+++.. ++. ..+++.+|+.+.+|.||+|+|.-.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 4566777777778 9999999999999854 333 467788888899999999999654
No 444
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.20 E-value=0.15 Score=48.49 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=36.4
Q ss_pred cEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652 187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240 (352)
Q Consensus 187 ~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 240 (352)
.+.+|+.+.|+.+|+|++||++.+.. .+.+|...|-.+|+.|+.
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR 481 (486)
T ss_pred eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence 57789899999999999999998754 455677888888888874
No 445
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.16 E-value=0.24 Score=45.71 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 4789999999999999999999999999999876544
No 446
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=92.07 E-value=0.22 Score=45.27 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ 108 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~ 108 (352)
.++|||+|..|+-+|..|++.+ .+|.|+++++....
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 4799999999999999999987 69999999976543
No 447
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=92.03 E-value=0.23 Score=46.83 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=31.5
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEE--EEecCCcc
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--IIFPENHL 106 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt--vv~~~~~~ 106 (352)
..+.+++|+|||.+|+-+|.+|++++.+++ +++.++++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 357899999999999999999999987764 47766554
No 448
>PRK07395 L-aspartate oxidase; Provisional
Probab=92.02 E-value=0.24 Score=49.42 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.+|.+.+|++||+||+|.|+.....-.++.. -.....+.-.|+.+++.+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111111111 1123346666777777764
No 449
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.00 E-value=0.62 Score=38.74 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652 70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
.+++++|+|+|. .|..+|..|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 689999999997 5999999999999999988764
No 450
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.96 E-value=0.48 Score=46.04 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=54.9
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh--CCcEEEcCC-eEEEEEecCCC
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGA-SIKNLEAGSDG 145 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~--~gV~~~~~~-~v~~i~~~~~~ 145 (352)
+....++|+|-|-+|+.+|..|.++|.+|++.+..+. .+. . +.|++ .|++++.+. ...
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~~-~----~~l~~~~~g~~~~~~~~~~~-------- 64 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PPG-L----DTLAREFPDVELRCGGFDCE-------- 64 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------chh-H----HHHHhhcCCcEEEeCCCChH--------
Confidence 4566799999999999999999999999999876541 111 1 22444 377776531 100
Q ss_pred cEEEEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 146 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 146 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
. .-.+|.||+++|..|+.+.+.
T Consensus 65 ---~-------~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 65 ---L-------LVQASEIIISPGLALDTPALR 86 (448)
T ss_pred ---H-------hcCCCEEEECCCCCCCCHHHH
Confidence 0 124799999999988766543
No 451
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=91.95 E-value=0.27 Score=46.99 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL 110 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~ 110 (352)
...+|+|||+|..|+-+|..|.+.| .+++|++.++++-.|.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 4568999999999999999999665 6788999888775544
No 452
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=91.90 E-value=1.8 Score=39.84 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
...++|||+|..|+-.|..|+..|.+|.+++..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQE 37 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence 356899999999999999999999999998755
No 453
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.87 E-value=0.2 Score=50.44 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=33.8
Q ss_pred CCcEEeCCCCCCC------CCCEEEecccccc--CCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRTR------MPGIFAIGDVAAF--PLK-MYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t~------~~~Iya~GD~a~~--~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|++.+|.+.+|+ +||+||+|+|+.. .+. ..+.. ....|.-.|+.|++++.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggn----sl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSN----STAECLVWGRIAGEQAA 411 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhh----HHHHHHHHHHHHHHHHH
Confidence 5899999999998 9999999999752 111 11111 23345566666666654
No 454
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.82 E-value=0.38 Score=50.46 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCeEEEECCChHHHHH-HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 71 AKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
-+++.|+|-|-+|+.. |..|.++|.+|++.+.... +. . +.|++.|++++.+... . .
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~--------~---~ 60 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQE--------E---H 60 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCH--------H---H
Confidence 3579999999999998 9999999999999775431 11 2 2367789998765311 0 0
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~ 176 (352)
+ -.+|+||+++|..|+.+.+
T Consensus 61 --~-----~~~d~vV~SpgI~~~~p~~ 80 (809)
T PRK14573 61 --V-----PEDAVVVYSSSISKDNVEY 80 (809)
T ss_pred --c-----CCCCEEEECCCcCCCCHHH
Confidence 0 1379999999999876644
No 455
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.73 E-value=0.85 Score=41.38 Aligned_cols=34 Identities=41% Similarity=0.584 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
+.+|+|+|||.+|.+.|.....+|.+||+++.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 3589999999999999999999999999999874
No 456
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.72 E-value=0.71 Score=35.40 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=36.1
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652 74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 133 (352)
Q Consensus 74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~ 133 (352)
++|+|.|..|.+++..|.+.+.+|+++++.+.. .+.+++.|++++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~-------------~~~~~~~~~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER-------------VEELREEGVEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH-------------HHHHHHTTSEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH-------------HHHHHhcccccccc
Confidence 689999999999999999977799999876421 24456777777654
No 457
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.72 E-value=0.32 Score=44.24 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
++|.|||+|..|..+|..|++.|.+|+++++++..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~ 37 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQL 37 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence 579999999999999999999999999998876543
No 458
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.65 E-value=0.24 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.8
Q ss_pred CCcEEeCCCCCC-CCCCEEEeccccc
Q 018652 185 VGGIQVDGQFRT-RMPGIFAIGDVAA 209 (352)
Q Consensus 185 ~g~i~vd~~~~t-~~~~Iya~GD~a~ 209 (352)
-|||.||.+.+| ++||+||+|+|+.
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~ 397 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAAC 397 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccc
Confidence 489999999999 6999999999975
No 459
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.64 E-value=0.27 Score=50.08 Aligned_cols=25 Identities=36% Similarity=0.724 Sum_probs=23.2
Q ss_pred CcEEeCCCCCCCCCCEEEecccccc
Q 018652 186 GGIQVDGQFRTRMPGIFAIGDVAAF 210 (352)
Q Consensus 186 g~i~vd~~~~t~~~~Iya~GD~a~~ 210 (352)
|||.||.+.+|++||+||+|+|+..
T Consensus 407 GGi~vd~~~~T~i~GLyAaGE~~~g 431 (640)
T PRK07573 407 GGLWVDYNLMSTIPGLFVIGEANFS 431 (640)
T ss_pred CCEEECCCCccccCCEEECcccccc
Confidence 8999999999999999999999753
No 460
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.57 E-value=0.25 Score=45.34 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=54.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 151 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~ 151 (352)
.+|.|+|+|..|.-+|..|++.|++|++..|++... +.+... +.+.++..+...- +.. ..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~---------~~i~~~--~~N~~yLp~i~lp------~~l--~at 62 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIV---------AEINET--RENPKYLPGILLP------PNL--KAT 62 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHH---------HHHHhc--CcCccccCCccCC------ccc--ccc
Confidence 579999999999999999999999999987765322 222222 2344554432110 000 111
Q ss_pred cCCCCEEE-cCEEEEccCCCCCchhhhhc
Q 018652 152 LEDGSTID-ADTIVIGIGAKPTVSPFERV 179 (352)
Q Consensus 152 ~~~g~~i~-~D~vi~a~G~~p~~~~~~~~ 179 (352)
.+-.+.++ +|.|+++++...-.+.++++
T Consensus 63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 63 TDLAEALDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred cCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 11122344 89999998876554444443
No 461
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.38 E-value=0.26 Score=39.28 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 103 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~ 103 (352)
.++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999997 68888765
No 462
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=91.33 E-value=0.27 Score=49.68 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCCCCCCCCEEEecccccc
Q 018652 192 GQFRTRMPGIFAIGDVAAF 210 (352)
Q Consensus 192 ~~~~t~~~~Iya~GD~a~~ 210 (352)
.+.+|++|++||+|||+..
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~ 418 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGA 418 (614)
T ss_pred cCCccccCCEEeceecccC
Confidence 7788999999999999753
No 463
>PRK04148 hypothetical protein; Provisional
Probab=91.31 E-value=0.8 Score=36.40 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 105 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~ 105 (352)
+++++++||-| .|.++|..|++.|.+|+.++.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 45789999999 999999999999999999987653
No 464
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.21 E-value=0.23 Score=45.32 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+.|-|||+|..|.|.|+.++++|..|.+.+.++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 3568899999999999999999999999998764
No 465
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=91.12 E-value=0.29 Score=47.35 Aligned_cols=38 Identities=11% Similarity=-0.079 Sum_probs=33.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 109 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~ 109 (352)
-.|+|||+|..++-+|..|++.|.+|.++++++..-.+
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE 42 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence 46999999999999999999999999999998765443
No 466
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.03 E-value=0.48 Score=42.85 Aligned_cols=94 Identities=20% Similarity=0.159 Sum_probs=57.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 150 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v 150 (352)
..+|+|+|.|.+|--+|..|++.|..+.++.+...-. .+.. -.+.|+..... ....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~----------~~~~-a~~lgv~d~~~---~~~~---------- 58 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAA----------TLKA-ALELGVIDELT---VAGL---------- 58 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHH----------HHHH-HhhcCcccccc---cchh----------
Confidence 4689999999999999999999999999887654211 1111 12233322110 0000
Q ss_pred EcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeC
Q 018652 151 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 191 (352)
Q Consensus 151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd 191 (352)
....-.+|+||+|++...-.+.+++..-....|.+++|
T Consensus 59 ---~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 59 ---AEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred ---hhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEe
Confidence 00124589999999988766667665433334555555
No 467
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.75 E-value=0.38 Score=42.07 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 468999999999999999999999999998765
No 468
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=90.73 E-value=5.7 Score=38.68 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCC---CcEEEEEc-CCCC--EE---EcCEEEEccCCCC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL-EDGS--TI---DADTIVIGIGAKP 171 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~---~~~~~v~~-~~g~--~i---~~D~vi~a~G~~p 171 (352)
.+..-+.+.|+++||+|.++++|+.++-..+ ..+..+.+ .+|+ .+ +-|+|++..|..-
T Consensus 208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 3445566788999999999999999864322 22333333 3443 22 3788888888654
No 469
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.61 E-value=0.49 Score=40.54 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 103 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~ 103 (352)
..++|+|+|.|-.|.++|..|++.|. +++++++.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999999999999999999998 59998877
No 470
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.58 E-value=0.45 Score=47.82 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=34.0
Q ss_pred CCcEEeCCCCCC------CCCCEEEecccccc--CCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRT------RMPGIFAIGDVAAF--PLK-MYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t------~~~~Iya~GD~a~~--~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|+|.+|.+.+| ++||+||+|+|+.. .+. .++.. ....|.-.|+.|++++.
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggn----sl~~~~v~G~~Ag~~aa 410 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSN----SLLECVVYGRRTGAAIA 410 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccch----hHHHHHHHHHHHHHHHH
Confidence 489999988886 69999999999752 111 11111 33446666777777665
No 471
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.54 E-value=0.5 Score=40.46 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=57.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 151 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~ 151 (352)
+++.|+|.|.+|--+|..|++.|++|++-.++. ++-.....+. .+.. ++..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~---l~~~---------i~~~~-------- 53 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAA---LGPL---------ITGGS-------- 53 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHh---hccc---------cccCC--------
Confidence 468899999999999999999999999986543 1111122222 2222 11110
Q ss_pred cCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC
Q 018652 152 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG 192 (352)
Q Consensus 152 ~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~ 192 (352)
..+ -.-.+|.|++++++....+.+++..-.. .|.|++|.
T Consensus 54 ~~d-A~~~aDVVvLAVP~~a~~~v~~~l~~~~-~~KIvID~ 92 (211)
T COG2085 54 NED-AAALADVVVLAVPFEAIPDVLAELRDAL-GGKIVIDA 92 (211)
T ss_pred hHH-HHhcCCEEEEeccHHHHHhHHHHHHHHh-CCeEEEec
Confidence 000 1245999999999987766666543222 26788886
No 472
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.54 E-value=0.36 Score=44.39 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~ 37 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA 37 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence 47999999999999999999999999999887643
No 473
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.45 E-value=0.5 Score=40.82 Aligned_cols=74 Identities=24% Similarity=0.427 Sum_probs=50.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.+++|+|||||-.|.-=|..|.+.|.+|+++.+.. .++ +..+..+.+++++. ..++
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-------~~e----l~~~~~~~~i~~~~----~~~~--------- 66 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-------EPE----LKALIEEGKIKWIE----REFD--------- 66 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-------cHH----HHHHHHhcCcchhh----cccC---------
Confidence 68899999999999999999999999999997642 233 34444444544432 1111
Q ss_pred EEcCCCCEEEcCEEEEccCCCC
Q 018652 150 VKLEDGSTIDADTIVIGIGAKP 171 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p 171 (352)
......+++|+.||+-..
T Consensus 67 ----~~~~~~~~lviaAt~d~~ 84 (210)
T COG1648 67 ----AEDLDDAFLVIAATDDEE 84 (210)
T ss_pred ----hhhhcCceEEEEeCCCHH
Confidence 111233999999998644
No 474
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=4.9 Score=37.13 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 101 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~ 101 (352)
..-..+|||||-.|+.+|...+..|.+|.+++
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lD 49 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLD 49 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence 34579999999999999999999999998865
No 475
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.39 E-value=0.39 Score=48.76 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCcEEeCCCC-CCCCCCEEEeccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQF-RTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~--~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.+|... +|++||+||+|+|+..... .++.. ....|.-.|+.|++++.
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gn----sl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGN----SLSDLLVFGRRAGLGAA 444 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccch----hHHHHHHHHHHHHHHHH
Confidence 4899999875 5899999999999753211 11111 23345666666666654
No 476
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=0.85 Score=44.14 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=53.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 149 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~ 149 (352)
.++++.|+|-|-+|+..+..|++.|.+|+..+.... .+. .+.+++ |+.+..+... ..
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~------~~~-----~~~l~~-g~~~~~~~~~--------~~--- 61 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT------PPG-----LDKLPE-NVERHTGSLN--------DE--- 61 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC------chh-----HHHHhc-CCEEEeCCCC--------HH---
Confidence 367899999999999999999999999999876531 111 122433 7877653210 00
Q ss_pred EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 150 VKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
..-++|++|++.|..++.+.+.
T Consensus 62 ------~~~~~d~vv~spgi~~~~~~~~ 83 (438)
T PRK03806 62 ------WLLAADLIVASPGIALAHPSLS 83 (438)
T ss_pred ------HhcCCCEEEECCCCCCCCHHHH
Confidence 0124688999999988765543
No 477
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.03 E-value=1.5 Score=43.01 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 182 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 182 (352)
..+...+.+.+++.|++++.+++|++++..+++.+ .+. +.+|+ ++.+|.||+|+|.-.. .+++.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 35677777888889999999999999986444332 232 23342 6899999999997653 456666654
No 478
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.98 E-value=0.55 Score=47.27 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCcEEeCCCCC------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFR------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-||+.+|...+ |++||+||+|+|+.....-.++.. -.....+.-.|+.|++++.
T Consensus 356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlg-gnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLG-TNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCc-hhhHHHHHHHHHHHHHHHH
Confidence 48899998877 589999999999752111000110 1133345666666666664
No 479
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=89.95 E-value=1.3 Score=43.57 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-----CEEEcCEEEEccCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA 169 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~ 169 (352)
..+.+.+.+.+++.|.++++++.|++|...+ +....+.+.++ +++.+|.||+++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 3577788888999999999999999998643 44445555454 57899999999875
No 480
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.91 E-value=0.59 Score=43.60 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=52.9
Q ss_pred eEEEECCChHHHHHHHHHHhCC--------CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWK--------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g--------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~ 144 (352)
+|.|||+|..|..+|..|++.+ .+|+++.++..+ .++.+.+.+.+. ..+.++.++... . +
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~--~~n~~ylpgi~L-----p-~ 68 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEI----EGRNLTEIINTT--HENVKYLPGIKL-----P-A 68 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecccc----CCHHHHHHHHhc--CCCccccCCCcC-----C-C
Confidence 5899999999999999999988 899998875422 234444444443 223444433211 0 0
Q ss_pred CcEEEEEcCC-CCE-EEcCEEEEccCCCCCchhh
Q 018652 145 GRVAAVKLED-GST-IDADTIVIGIGAKPTVSPF 176 (352)
Q Consensus 145 ~~~~~v~~~~-g~~-i~~D~vi~a~G~~p~~~~~ 176 (352)
. + .. +.| .+. -.+|.+|+++....-.+.+
T Consensus 69 ~-i-~a-t~dl~eal~~ADiIIlAVPs~~i~~vl 99 (342)
T TIGR03376 69 N-L-VA-VPDLVEAAKGADILVFVIPHQFLEGIC 99 (342)
T ss_pred C-e-EE-ECCHHHHHhcCCEEEEECChHHHHHHH
Confidence 0 0 11 112 122 3589999998765443333
No 481
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.81 E-value=1.9 Score=42.51 Aligned_cols=67 Identities=22% Similarity=0.478 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652 114 SLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 182 (352)
Q Consensus 114 ~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 182 (352)
.+...+.+.+++.| +++++++.|++++..+++.+ .+. +.+|+ ++.++.||+|+|.-.. .+++.+|+.
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 55677777788876 99999999999986555533 233 33454 6899999999997653 566666654
No 482
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=89.80 E-value=0.5 Score=47.39 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CcEEeCCCCC---------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 186 GGIQVDGQFR---------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 186 g~i~vd~~~~---------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
|+|.+|...+ |++||+||+|+|+.....-.++.... ....|.-.|+.|++++.
T Consensus 332 GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggn-sl~~a~vfGr~Ag~~aa 393 (565)
T TIGR01816 332 GGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTN-SLLDLVVFGRAAGLSAA 393 (565)
T ss_pred CCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhh-HHHHHHHHHHHHHHHHH
No 483
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.78 E-value=0.34 Score=46.10 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 105 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~ 105 (352)
+|.|||.|++|+-+|..++. |.+|+++++++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988875 999999998753
No 484
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.76 E-value=0.64 Score=44.43 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=32.3
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
..+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 468999999999999999999999999998877654
No 485
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=89.74 E-value=0.46 Score=47.77 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
...|+|||+|..|+..|..+++.|.+|.|+++..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~ 42 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEP 42 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3479999999999999999999999999999764
No 486
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.72 E-value=1.9 Score=38.99 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccccCHHHHHHHHHHHHhCCc
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV 128 (352)
.+++++|+|+|-.+--++..|.+.| .+|+|+.|.. +-.+.+.+.+.+.+.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~---------~ra~~La~~~~~~~~ 175 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR---------ERAEELADLFGELGA 175 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH---------HHHHHHHHHhhhccc
Confidence 3689999999999999999999999 5799998754 223455566666554
No 487
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=89.70 E-value=5.8 Score=38.30 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172 (352)
Q Consensus 114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 172 (352)
++.+.+-+...=.|-.+.+++.|.++..++++....|.. +|+.+.|+.||....+-|+
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dpsy~p~ 290 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDPSYLPE 290 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEGGGBGC
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECCccCcc
Confidence 666667677677889999999999998766787777765 8889999999988877774
No 488
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=89.70 E-value=1.6 Score=42.78 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCCeEEEEEecC--CC--cEEEEEcCCC---CEEEcCEEEEccCCC
Q 018652 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 170 (352)
Q Consensus 113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--~~--~~~~v~~~~g---~~i~~D~vi~a~G~~ 170 (352)
..+.+.+.+.+++.|.+++++++|++|..++ ++ .+..+.+.+| +.+.+|.||++++..
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 3455667788899999999999999998643 22 2556666544 468999999999853
No 489
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=89.63 E-value=0.49 Score=45.52 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
..++|||+|..|+.+|..+++.|.+|++++++
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 46899999999999999999999999999865
No 490
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.63 E-value=0.81 Score=41.72 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
-++|.|||+|.+|..+|..|+..|.+|+++++++..+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 40 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAAL 40 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 4689999999999999999999999999998876443
No 491
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.61 E-value=1.8 Score=42.46 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34699999999999999999999999998887654
No 492
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.48 E-value=1 Score=44.37 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.++++.|+|-|-+|+.+|..|.++|.+|++.+...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 36789999999999999999999999999887543
No 493
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.41 E-value=1 Score=43.68 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=52.3
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCC-eEEEEEecCCCcEE
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVA 148 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~-~v~~i~~~~~~~~~ 148 (352)
+++.|+|-|-+|+..+..|.+. |.+|++.+..+. .+ . .+.|++ |+++..+. ...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~------~~-~----~~~l~~-g~~~~~g~~~~~----------- 64 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET------PP-G----QEQLPE-DVELHSGGWNLE----------- 64 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC------ch-h----HHHhhc-CCEEEeCCCChH-----------
Confidence 7899999999999999999887 578998776542 11 1 122444 88887542 100
Q ss_pred EEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652 149 AVKLEDGSTIDADTIVIGIGAKPTVSPFE 177 (352)
Q Consensus 149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 177 (352)
.+ -.+|+||+++|..|+.+.++
T Consensus 65 ~~-------~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 65 WL-------LEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred Hh-------ccCCEEEECCCCCCCCHHHH
Confidence 01 24799999999988766543
No 494
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.27 E-value=0.52 Score=42.90 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 106 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~ 106 (352)
++|.|||+|..|..+|..|++.|.+|+++++++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 68999999999999999999999999999877643
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.25 E-value=0.64 Score=42.29 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652 70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104 (352)
Q Consensus 70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~ 104 (352)
.+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999999999999988754
No 496
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.23 E-value=0.52 Score=47.51 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCcEEeCCCCC----------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFR----------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~----------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-||+.+|...+ |++||+||+|+|+.....-.++.. -.....|.-.|+.|++++.
T Consensus 357 ~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLG-GNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccch-hhHHHHHHHHHHHHHHHHH
Confidence 47888887766 569999999999752111000110 1133346666666666654
No 497
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.22 E-value=0.6 Score=47.12 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=34.5
Q ss_pred CCcEEeCCCCCC---------CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652 185 VGGIQVDGQFRT---------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239 (352)
Q Consensus 185 ~g~i~vd~~~~t---------~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 239 (352)
-|||.+|.+.+| ++||+||+|+|+.....-.++.. -.....|.-.|+.|++++.
T Consensus 361 ~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~-gnsl~~~~v~Gr~Ag~~aa 423 (591)
T PRK07057 361 MGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLG-TNSLLDLVVFGRAAGNHIV 423 (591)
T ss_pred CCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccch-hhHHHHHHHHHHHHHHHHH
Confidence 489999988887 68999999999752111001111 1134456777777777765
No 498
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.18 E-value=0.55 Score=42.83 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652 73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103 (352)
Q Consensus 73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~ 103 (352)
++.|+|+|.+|.-+|..|++.|.+|+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6899999999999999999999999999874
No 499
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=89.13 E-value=1.3 Score=42.12 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170 (352)
Q Consensus 117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 170 (352)
+.+.+.+++.|.+++++++|++|+..+++ +..+...+|+.+.+|.||++++..
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCCHH
Confidence 44667778889999999999999875443 222222467789999999987743
No 500
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.09 E-value=0.66 Score=42.02 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652 72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107 (352)
Q Consensus 72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 107 (352)
++|.|||+|.+|..+|..+++.|.+|+++++++..+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~ 39 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAV 39 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHH
Confidence 579999999999999999999999999998776544
Done!