Query 018653
Match_columns 352
No_of_seqs 273 out of 914
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 5E-18 1.7E-22 129.6 4.7 55 203-260 6-60 (63)
2 4gat_A Nitrogen regulatory pro 99.7 9.9E-18 3.4E-22 129.0 4.1 55 204-261 9-63 (66)
3 1gnf_A Transcription factor GA 99.7 1.1E-17 3.9E-22 120.3 4.2 43 204-249 4-46 (46)
4 2vut_I AREA, nitrogen regulato 99.7 1.3E-17 4.5E-22 118.4 3.2 41 205-248 2-42 (43)
5 2kae_A GATA-type transcription 99.5 5.4E-16 1.8E-20 120.9 0.6 48 203-252 7-54 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 5.2E-15 1.8E-19 124.9 4.3 54 204-260 59-112 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 3.3E-13 1.1E-17 113.8 4.3 46 204-252 5-50 (115)
8 3ogk_Q JAZ1 incomplete degron 97.9 3.5E-06 1.2E-10 51.7 1.3 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 97.6 2.4E-05 8.1E-10 47.4 2.1 18 136-153 4-21 (21)
10 1pft_A TFIIB, PFTFIIBN; N-term 58.7 1.9 6.5E-05 30.1 -0.1 34 204-242 5-38 (50)
11 1dl6_A Transcription factor II 48.8 5.2 0.00018 29.2 0.9 34 204-242 11-44 (58)
12 2yrk_A Zinc finger homeobox pr 43.1 2.8 9.5E-05 30.9 -1.4 25 222-246 7-31 (55)
13 3cw2_K Translation initiation 40.2 9.2 0.00031 32.8 1.2 30 205-237 104-133 (139)
14 1k81_A EIF-2-beta, probable tr 35.7 4.8 0.00016 26.8 -1.0 29 206-238 2-31 (36)
15 2d74_B Translation initiation 35.6 9.5 0.00032 33.1 0.5 30 205-237 105-134 (148)
16 1nee_A EIF-2-beta, probable tr 34.9 9.7 0.00033 32.6 0.5 29 205-236 103-131 (138)
17 2owa_A Arfgap-like finger doma 30.8 29 0.00098 29.6 2.8 37 204-244 36-72 (138)
18 2ds5_A CLPX, ATP-dependent CLP 29.9 24 0.0008 25.4 1.8 31 205-237 12-42 (51)
19 1ovx_A ATP-dependent CLP prote 29.3 23 0.00079 26.9 1.7 32 205-238 19-50 (67)
20 2f1l_A 16S rRNA processing pro 29.2 12 0.00039 33.3 0.0 11 17-27 7-17 (187)
21 3k7a_M Transcription initiatio 29.0 16 0.00053 35.0 0.9 35 204-242 21-56 (345)
22 2crw_A ARF GAP 3, ADP-ribosyla 28.6 33 0.0011 29.7 2.8 37 204-244 29-65 (149)
23 2iqj_A Stromal membrane-associ 28.5 30 0.001 29.3 2.5 37 204-244 27-63 (134)
24 2jrb_A ORF 1 protein; RNA bind 27.9 39 0.0013 26.9 2.9 24 74-99 46-69 (88)
25 2crr_A Stromal membrane-associ 26.8 42 0.0014 28.6 3.1 36 204-243 29-64 (141)
26 2ctu_A Zinc finger protein 483 24.8 26 0.00088 23.9 1.2 40 204-246 18-57 (73)
27 2zjr_Z 50S ribosomal protein L 24.7 12 0.0004 27.7 -0.7 23 204-237 30-52 (60)
28 2olm_A Nucleoporin-like protei 24.7 38 0.0013 28.8 2.4 36 204-243 25-60 (140)
29 1twf_L ABC10-alpha, DNA-direct 23.8 17 0.00058 27.7 0.0 29 201-236 25-53 (70)
30 1sse_A AP-1 like transcription 23.5 29 0.001 23.2 1.1 13 327-339 10-22 (35)
31 3cng_A Nudix hydrolase; struct 23.1 23 0.00077 30.1 0.7 33 204-238 3-35 (189)
32 2g2k_A EIF-5, eukaryotic trans 22.8 14 0.00048 32.8 -0.7 32 205-238 97-129 (170)
33 3sub_A ADP-ribosylation factor 22.7 49 0.0017 29.2 2.8 36 204-243 22-57 (163)
34 2lk0_A RNA-binding protein 5; 22.5 18 0.00061 23.3 -0.0 24 203-236 4-27 (32)
35 2r51_A Vacuolar protein sortin 22.2 27 0.00092 33.9 1.1 19 17-35 4-24 (340)
36 2e29_A ATP-dependent RNA helic 22.2 24 0.00083 28.0 0.7 28 75-103 54-81 (92)
37 3v2d_5 50S ribosomal protein L 22.1 13 0.00045 27.5 -0.9 22 204-236 30-51 (60)
38 2ivd_A PPO, PPOX, protoporphyr 22.1 18 0.0006 34.6 -0.2 13 16-28 4-16 (478)
39 1qyp_A RNA polymerase II; tran 21.2 9.6 0.00033 27.2 -1.7 37 204-240 15-55 (57)
40 2lvu_A Zinc finger and BTB dom 26.7 20 0.00069 19.5 0.0 17 229-245 3-19 (26)
41 3dwd_A ADP-ribosylation factor 21.1 52 0.0018 28.5 2.6 36 204-243 38-73 (147)
42 2p57_A GTPase-activating prote 21.1 37 0.0013 29.2 1.7 37 204-244 37-73 (144)
43 1zm8_A Nuclease, endonuclease; 20.8 21 0.00071 33.0 0.0 18 311-328 224-241 (259)
44 2lcq_A Putative toxin VAPC6; P 20.8 18 0.00062 30.7 -0.4 29 204-240 132-160 (165)
45 3soo_A LINE-1 type transposase 20.7 67 0.0023 25.6 3.0 25 73-99 45-69 (88)
46 2k1p_A Zinc finger RAN-binding 20.4 35 0.0012 22.0 1.0 24 203-236 5-28 (33)
47 2b0o_E UPLC1; arfgap, structur 20.1 56 0.0019 29.7 2.8 36 204-243 42-77 (301)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.71 E-value=5e-18 Score=129.56 Aligned_cols=55 Identities=29% Similarity=0.531 Sum_probs=47.6
Q ss_pred CCccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCcccccccccc
Q 018653 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (352)
Q Consensus 203 ~~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~ 260 (352)
....|+||+++ .||+||+||+|+ +|||||||+|++++++||+.+.+..|..+.+.
T Consensus 6 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 6 AGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 46799999997 599999999996 99999999999999999999887777666554
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.69 E-value=9.9e-18 Score=129.03 Aligned_cols=55 Identities=35% Similarity=0.617 Sum_probs=48.7
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCccccccccccc
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~ 261 (352)
...|+||+++ .||+||+||+|. +|||||||||++++++||+++....|..+.+..
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 6899999997 599999999995 999999999999999999999887776665554
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.69 E-value=1.1e-17 Score=120.29 Aligned_cols=43 Identities=44% Similarity=0.832 Sum_probs=39.9
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCc
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~ 249 (352)
...|+||+++ +||+||+||+|+ +|||||||||++++++||++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 5789999997 599999999996 999999999999999999875
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.68 E-value=1.3e-17 Score=118.40 Aligned_cols=41 Identities=44% Similarity=0.878 Sum_probs=38.4
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCC
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~ 248 (352)
..|++|+++ .||+||+||+|+ +|||||||+|++++++||++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 579999997 599999999996 99999999999999999986
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=5.4e-16 Score=120.89 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCcc
Q 018653 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR 252 (352)
Q Consensus 203 ~~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~~~~ 252 (352)
....|+||+++ .||+||+||.+..+|||||||||++++++||+.....
T Consensus 7 ~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 7 KSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp -CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence 36899999998 5999999544444999999999999999999886544
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.51 E-value=5.2e-15 Score=124.86 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=47.6
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCcccccccccc
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~ 260 (352)
...|+||++++ ||+||+||+| .+|||||||||+++++.||+++....|..+.+.
T Consensus 59 ~~~C~~C~t~~--tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 59 GTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp TCCCTTTCCSC--CSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred cccCCCcCCCC--cceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 57999999974 9999999999 899999999999999999999988777766554
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.35 E-value=3.3e-13 Score=113.84 Aligned_cols=46 Identities=46% Similarity=0.796 Sum_probs=41.2
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCCCCcCcc
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR 252 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~~~~~~~ 252 (352)
.+.|.||+++ +||+||+||+| .+|||||||||++++..||+.+.++
T Consensus 5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKK 50 (115)
T 4hc9_A 5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKR 50 (115)
T ss_dssp -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCC
T ss_pred CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccc
Confidence 6799999997 59999999999 7999999999999999999876554
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.88 E-value=3.5e-06 Score=51.67 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhccccccccc....
Q 018653 138 RIASLVRFREKRKERSFEKKIRY.... 160 (352)
Q Consensus 138 R~aSL~Rf~eKRk~R~~~k~i~Y.... 160 (352)
|++||+||+||||+|..++ .||
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999998877 676
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=97.62 E-value=2.4e-05 Score=47.42 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhhcc.....
Q 018653 136 SQRIASLVRFREKRKERS..... 153 (352)
Q Consensus 136 ~~R~aSL~Rf~eKRk~R~..... 153 (352)
.+|++||+||+||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 589999999999999974
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.68 E-value=1.9 Score=30.09 Aligned_cols=34 Identities=18% Similarity=0.551 Sum_probs=23.9
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~ 242 (352)
...|.+|+. +++-..--.| ...|..||+-|..+.
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCcccccc
Confidence 468999985 3444443445 799999999887544
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.84 E-value=5.2 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=25.8
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~ 242 (352)
...|..|+. ++....--.| .+.|..||+-+..+.
T Consensus 11 ~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 11 RVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDRV 44 (58)
T ss_dssp CCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCSC
T ss_pred cccCcCCCC----CceeEeCCCC-eEEeCCCCCEEeccc
Confidence 458999986 4466665667 799999999987654
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=43.10 E-value=2.8 Score=30.92 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=20.2
Q ss_pred cCCCCCchhchHhhhhHHhcCCCCC
Q 018653 222 RGPAGPRTLCNACGLMWANKGTLRD 246 (352)
Q Consensus 222 ~GP~G~~~LCNaCGl~~~~~~~~r~ 246 (352)
.+|+||++-|.-||..|--+-.++.
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slqD 31 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIRD 31 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHHH
T ss_pred CCCCCCCccccccCcccccccchhh
Confidence 5788988999999998887766655
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=40.23 E-value=9.2 Score=32.81 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhhh
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~ 237 (352)
-.|..|+.+. |-+-+.+ .---.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~-r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEK-KSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSC-STTTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeC-CeEEEEecCCCCC
Confidence 6899999985 8888865 2235779999964
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=35.68 E-value=4.8 Score=26.84 Aligned_cols=29 Identities=34% Similarity=0.815 Sum_probs=20.4
Q ss_pred cccccccccCCCCccccCCCCC-chhchHhhhhH
Q 018653 206 ICQHCGISEKLTPAMRRGPAGP-RTLCNACGLMW 238 (352)
Q Consensus 206 ~C~~Cg~t~~~Tp~wR~GP~G~-~~LCNaCGl~~ 238 (352)
.|..|+-.+ |-+-+++ +. -.-|+|||-..
T Consensus 2 lC~~C~~pe--T~l~~~~--~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEG--RVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCE--EEEEEET--TEEEEEEETTTEEE
T ss_pred CCcCCCCCC--cEEEEeC--CcEEEEhhcCCCcc
Confidence 488999885 7777754 22 24499999654
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=35.61 E-value=9.5 Score=33.10 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=21.9
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhhh
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~ 237 (352)
-.|..|+... |-+-+.+ .---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~-r~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRD-RFHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSS-SSBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeC-CEEEEEecCCCCC
Confidence 5799999985 8888764 2234779999854
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=34.89 E-value=9.7 Score=32.63 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=21.7
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhh
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl 236 (352)
-.|..|+.+. |-+-+.+ .---.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~-r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREG-RISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEET-TTTEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcC-CeEEEEccCCCC
Confidence 5799999985 8888865 223477999985
No 17
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.82 E-value=29 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=31.6
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~ 244 (352)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4799999986 7999999999 89999999888776653
No 18
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=29.94 E-value=24 Score=25.36 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.2
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhhh
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~ 237 (352)
.+|+-||.+.......=.|| | ...|+.|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 68999998755555555566 4 5799999543
No 19
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=29.35 E-value=23 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=22.9
Q ss_pred ccccccccccCCCCccccCCCCCchhchHhhhhH
Q 018653 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~ 238 (352)
.+|+-||.+.......=.|| | ...|+.|=..-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 68999998754455555566 4 57999996543
No 20
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=29.21 E-value=12 Score=33.31 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 018653 17 TEEHDVAQTPI 27 (352)
Q Consensus 17 ~~~~~~~~~~~ 27 (352)
||||+||++|+
T Consensus 7 ~~~~~~~~~~~ 17 (187)
T 2f1l_A 7 HHHHHHMPTPA 17 (187)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 45567788885
No 21
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=28.99 E-value=16 Score=35.02 Aligned_cols=35 Identities=29% Similarity=0.681 Sum_probs=23.6
Q ss_pred CccccccccccCCCC-ccccCCCCCchhchHhhhhHHhcC
Q 018653 204 SRICQHCGISEKLTP-AMRRGPAGPRTLCNACGLMWANKG 242 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp-~wR~GP~G~~~LCNaCGl~~~~~~ 242 (352)
...|.+||.+ +| .-.+--.| .+.|..||+-..-+-
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e~~ 56 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSDKL 56 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEccccc
Confidence 4579999874 22 33444466 789999998776543
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.55 E-value=33 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=31.8
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~ 244 (352)
...|..|+.. -|.|=.=..| -.+|-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 5799999986 7999999999 89999998888876653
No 23
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=28.53 E-value=30 Score=29.26 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=31.8
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~ 244 (352)
...|..||.. -|.|=.=..| -.+|-.|.-..+.-|++
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 5799999986 7999999999 89999998888876653
No 24
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=27.94 E-value=39 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.0
Q ss_pred CccceEEEccEEEEeCCCChHHHHHH
Q 018653 74 TSELTVAYEGEVYVFPAVTPHKVQAL 99 (352)
Q Consensus 74 taQLTIfY~G~V~VFDdVp~eKaqaI 99 (352)
.+-|+++|+|++..|.+ .+|+++.
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~ef 69 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQY 69 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHH
Confidence 56899999999999994 4555554
No 25
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.79 E-value=42 Score=28.60 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=31.1
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~ 243 (352)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 4799999986 7999998999 8999999888887665
No 26
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=26 Score=23.87 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=27.7
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCCCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~r~ 246 (352)
...|..|+..-.....+++ .....|..||..|.....++.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 5789999876433344444 446899999999887665443
No 27
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.69 E-value=12 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=17.3
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhh
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~ 237 (352)
...|.+||.. -=+..+|-.||.|
T Consensus 30 l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 30 LTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred ceECCCCCCE-----------eCCceEcCCCCcC
Confidence 5789999974 2237899999943
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=24.67 E-value=38 Score=28.84 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=30.3
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~ 243 (352)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 5799999985 7999999999 8999999877766554
No 29
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.77 E-value=17 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=19.9
Q ss_pred CCCCccccccccccCCCCccccCCCCCchhchHhhh
Q 018653 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (352)
Q Consensus 201 ~~~~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl 236 (352)
....-.|..||..- ... .+...-|..||-
T Consensus 25 ~~v~Y~C~~CG~~~--e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKL--SLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEE--CCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcc--eeC-----CCCCccCCCCCc
Confidence 45578999999852 222 233468999998
No 30
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=23.51 E-value=29 Score=23.22 Aligned_cols=13 Identities=54% Similarity=0.938 Sum_probs=10.3
Q ss_pred ccccCCCCCcccc
Q 018653 327 DFEIPSNFDEQVD 339 (352)
Q Consensus 327 ~~eip~~fd~qv~ 339 (352)
+|..-..|||||+
T Consensus 10 ~~nF~~~FDEqV~ 22 (35)
T 1sse_A 10 DFNFENQFDEQVS 22 (35)
T ss_dssp CGGGSSSCCCSSS
T ss_pred ccChhhhHHHHhh
Confidence 4556689999997
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=23.09 E-value=23 Score=30.08 Aligned_cols=33 Identities=24% Similarity=0.623 Sum_probs=24.0
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhH
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~ 238 (352)
.+.|..||..- +.....|..+....|-.||.++
T Consensus 3 ~~~C~~CG~~~--~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 3 MKFCSQCGGEV--ILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp CCBCTTTCCBC--EEECCTTCSSCEEEETTTTEEE
T ss_pred cccCchhCCcc--ccccccCCCCcceECCCCCCcc
Confidence 46899999852 4445566677778999999443
No 32
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.79 E-value=14 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=21.6
Q ss_pred ccccccccccCCCCccccCCCC-CchhchHhhhhH
Q 018653 205 RICQHCGISEKLTPAMRRGPAG-PRTLCNACGLMW 238 (352)
Q Consensus 205 ~~C~~Cg~t~~~Tp~wR~GP~G-~~~LCNaCGl~~ 238 (352)
-.|..|+-.+ |-+-+..-.+ --.-|+|||-..
T Consensus 97 VlC~~C~sPd--T~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPE--TDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSC--EEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCc--cEEEEecCCCEEEEEccccCCcc
Confidence 4799999985 8888832122 235699999643
No 33
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.68 E-value=49 Score=29.16 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=30.9
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~ 243 (352)
...|..|+.. -|.|=.=.-| -.||-.|.-..+.-|+
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 5799999986 7999999999 8999999877776665
No 34
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.48 E-value=18 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.646 Sum_probs=17.2
Q ss_pred CCccccccccccCCCCccccCCCCCchhchHhhh
Q 018653 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (352)
Q Consensus 203 ~~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl 236 (352)
..|.|..|+.. .-.+ +..|+.||.
T Consensus 4 gDW~C~~C~~~---Nfa~-------r~~C~~C~~ 27 (32)
T 2lk0_A 4 EDWLCNKCCLN---NFRK-------RLKCFRCGA 27 (32)
T ss_dssp SEEECTTTCCE---EETT-------CCBCTTTCC
T ss_pred CCCCcCcCcCC---cChh-------cceecCCCC
Confidence 47999999875 3333 468888875
No 35
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=22.22 E-value=27 Score=33.89 Aligned_cols=19 Identities=5% Similarity=0.181 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCccc--CCCCC
Q 018653 17 TEEHDVAQTPIPIQ--NGSKQ 35 (352)
Q Consensus 17 ~~~~~~~~~~~~~~--~~~~~ 35 (352)
|||||||-+|.-|+ ||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (340)
T 2r51_A 4 HHHHHHMGQSVEVEILLNDAE 24 (340)
T ss_dssp ---------CEEEEEEETTTT
T ss_pred cccccccCCCceEEEEECCCC
Confidence 67788888886444 44444
No 36
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=22.17 E-value=24 Score=28.00 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=24.4
Q ss_pred ccceEEEccEEEEeCCCChHHHHHHHHHh
Q 018653 75 SELTVAYEGEVYVFPAVTPHKVQALLLLL 103 (352)
Q Consensus 75 aQLTIfY~G~V~VFDdVp~eKaqaImlLa 103 (352)
..||+.=++.-.||| ||.|.+++|+...
T Consensus 54 ~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 54 TRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp EEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred CeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 378888888999998 9999999999764
No 37
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.10 E-value=13 Score=27.53 Aligned_cols=22 Identities=32% Similarity=0.818 Sum_probs=16.8
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhh
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl 236 (352)
...|.+||... =+..+|-.||.
T Consensus 30 l~~c~~cGe~~-----------~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMK-----------PPHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEE-----------CTTSCCTTTCE
T ss_pred eeECCCCCCee-----------cceEEcCCCCc
Confidence 57899999742 23689999993
No 38
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=22.07 E-value=18 Score=34.60 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCc
Q 018653 16 DTEEHDVAQTPIP 28 (352)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (352)
||||||||+.+..
T Consensus 4 ~~~~~~~~~~~~~ 16 (478)
T 2ivd_A 4 HHHHHHHMPRTTG 16 (478)
T ss_dssp -------------
T ss_pred cccccccCCCCCC
Confidence 5677788887753
No 39
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.21 E-value=9.6 Score=27.23 Aligned_cols=37 Identities=24% Similarity=0.601 Sum_probs=25.6
Q ss_pred CccccccccccC--CCCccccCCCCCc--hhchHhhhhHHh
Q 018653 204 SRICQHCGISEK--LTPAMRRGPAGPR--TLCNACGLMWAN 240 (352)
Q Consensus 204 ~~~C~~Cg~t~~--~Tp~wR~GP~G~~--~LCNaCGl~~~~ 240 (352)
...|..||-... .+-+||...++.. ..|-.||..|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 568999997421 1347888766632 579999988764
No 40
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.66 E-value=20 Score=19.46 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.2
Q ss_pred hhchHhhhhHHhcCCCC
Q 018653 229 TLCNACGLMWANKGTLR 245 (352)
Q Consensus 229 ~LCNaCGl~~~~~~~~r 245 (352)
..|+-||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46889998888765443
No 41
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=21.14 E-value=52 Score=28.50 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=31.1
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~ 243 (352)
...|..|+.. -|.|=.=..| -.||-.|.-..+.-|+
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 4799999986 7999999999 8999999988877654
No 42
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.11 E-value=37 Score=29.23 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.4
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~~ 244 (352)
...|..||.. -|.|=.=..| ..+|-.|.-..+.-|+.
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 5799999986 7999988889 89999999888876653
No 43
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A*
Probab=20.84 E-value=21 Score=33.04 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhccCCCcc
Q 018653 311 EDLQEAMDELANASGSDF 328 (352)
Q Consensus 311 ~d~q~~l~~l~~~s~~~~ 328 (352)
.+++.++++|-..+|.+|
T Consensus 224 ~~~~vsV~~iE~~TGl~F 241 (259)
T 1zm8_A 224 RAYKVSVDELESLTGYDF 241 (259)
T ss_dssp GGGBCCHHHHHHHHCCCT
T ss_pred heeeeEHHHHHHHHCCCc
Confidence 345668888888889887
No 44
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.80 E-value=18 Score=30.69 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=20.7
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHh
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~ 240 (352)
..+|..||.. ...+ ++...|-.||-..++
T Consensus 132 ~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 132 RYVCIGCGRK---FSTL-----PPGGVCPDCGSKVKL 160 (165)
T ss_dssp CEEESSSCCE---ESSC-----CGGGBCTTTCCBEEE
T ss_pred EEECCCCCCc---ccCC-----CCCCcCCCCCCccee
Confidence 6799999975 3332 445799999987543
No 45
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=20.74 E-value=67 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.0
Q ss_pred CCccceEEEccEEEEeCCCChHHHHHH
Q 018653 73 RTSELTVAYEGEVYVFPAVTPHKVQAL 99 (352)
Q Consensus 73 ~taQLTIfY~G~V~VFDdVp~eKaqaI 99 (352)
=.+.|+++|+|++..|.| .+|.++.
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eF 69 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXF 69 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccch
Confidence 457899999999999995 4566664
No 46
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.36 E-value=35 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=17.7
Q ss_pred CCccccccccccCCCCccccCCCCCchhchHhhh
Q 018653 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (352)
Q Consensus 203 ~~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl 236 (352)
..|.|..|+.. .-.|| +-||.||.
T Consensus 5 gDW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 5 NDWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SSCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CCcccCCCCCc---ccccc-------ccccccCC
Confidence 37999999975 44444 68998874
No 47
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=20.11 E-value=56 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=30.2
Q ss_pred CccccccccccCCCCccccCCCCCchhchHhhhhHHhcCC
Q 018653 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (352)
Q Consensus 204 ~~~C~~Cg~t~~~Tp~wR~GP~G~~~LCNaCGl~~~~~~~ 243 (352)
...|..|+.. -|.|-.-.-| ..+|-.|--..+.-|+
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 5799999985 7999999999 8999999766665553
Done!