BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018654
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 277 SNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTY 336
+ L DI D Y WRKYGQK +KGSP+PR YY+CSS GCP +KHVER + +LI TY
Sbjct: 7 TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTY 65
Query: 337 EGEHNH 342
EG+H+H
Sbjct: 66 EGKHDH 71
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 80.5 bits (197), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 282 DIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHN 341
D+ D Y WRKYGQK +KG+P+PR YYKC++ GC RKHVER +P ++ TYEG+HN
Sbjct: 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 342 H 342
H
Sbjct: 74 H 74
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 92 QFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPS 139
Q+ Q+ F+ V E+G +A+ + P+L L NGK+ ++ P+
Sbjct: 46 QYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 93
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 92 QFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPS 139
Q+ Q+ F+ V E+G +A+ + P+L L NGK+ ++ P+
Sbjct: 52 QYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 92 QFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPS 139
Q+ Q+ F+ V E+G +A+ + P+L L NGK+ ++ P+
Sbjct: 52 QYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,797,919
Number of Sequences: 62578
Number of extensions: 305812
Number of successful extensions: 372
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 5
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)