Query 018655
Match_columns 352
No_of_seqs 21 out of 23
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 04:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.4 0.03 1E-06 44.4 32.4 27 35-61 6-32 (284)
2 1i84_S Smooth muscle myosin he 97.2 0.00069 2.4E-08 70.8 8.7 7 307-313 1154-1160(1184)
3 1i84_S Smooth muscle myosin he 96.7 0.0035 1.2E-07 65.6 8.7 57 257-313 1069-1125(1184)
4 3na7_A HP0958; flagellar bioge 91.0 7.6 0.00026 34.0 19.1 119 155-289 26-145 (256)
5 2fxo_A Myosin heavy chain, car 90.4 6 0.0002 32.1 12.2 28 67-94 31-58 (129)
6 3na7_A HP0958; flagellar bioge 89.7 9.9 0.00034 33.3 17.6 32 237-268 125-156 (256)
7 3ghg_A Fibrinogen alpha chain; 88.5 7.5 0.00026 39.7 13.7 115 186-324 50-165 (562)
8 3oja_B Anopheles plasmodium-re 86.7 19 0.00065 33.6 14.5 41 257-297 525-565 (597)
9 3vkg_A Dynein heavy chain, cyt 85.6 68 0.0023 38.4 21.5 42 77-118 1927-1968(3245)
10 2dfs_A Myosin-5A; myosin-V, in 82.6 24 0.00083 37.5 14.8 45 80-124 924-972 (1080)
11 1t6f_A Geminin; coiled-coil, c 80.3 0.73 2.5E-05 32.4 1.7 21 226-246 10-30 (37)
12 3oja_B Anopheles plasmodium-re 77.4 19 0.00065 33.6 10.8 19 259-277 548-566 (597)
13 2fxo_A Myosin heavy chain, car 76.8 28 0.00095 28.1 13.9 96 79-174 15-110 (129)
14 2dfs_A Myosin-5A; myosin-V, in 73.2 75 0.0026 33.9 15.1 60 237-296 984-1043(1080)
15 3vkg_A Dynein heavy chain, cyt 71.0 1.8E+02 0.0063 34.9 24.6 71 232-313 2030-2100(3245)
16 3nmd_A CGMP dependent protein 69.0 8.3 0.00028 30.1 5.2 32 82-120 38-69 (72)
17 2eqb_B RAB guanine nucleotide 66.6 51 0.0017 26.8 10.4 76 48-123 18-94 (97)
18 3i00_A HIP-I, huntingtin-inter 66.3 24 0.0008 29.2 7.7 60 225-291 2-62 (120)
19 2v71_A Nuclear distribution pr 65.5 63 0.0022 28.6 10.8 48 152-199 128-180 (189)
20 3cve_A Homer protein homolog 1 64.9 18 0.0006 28.1 6.3 51 73-123 10-67 (72)
21 3ghg_A Fibrinogen alpha chain; 63.6 33 0.0011 35.1 9.6 45 182-226 138-194 (562)
22 1deq_A Fibrinogen (alpha chain 60.3 44 0.0015 32.8 9.5 48 151-198 99-157 (390)
23 3bas_A Myosin heavy chain, str 58.6 60 0.002 24.9 8.7 28 65-92 30-57 (89)
24 2akf_A Coronin-1A; coiled coil 56.0 18 0.00062 24.6 4.3 28 259-286 3-30 (32)
25 2iak_A Bullous pemphigoid anti 54.7 80 0.0027 26.2 9.1 128 28-167 53-180 (224)
26 2ocy_A RAB guanine nucleotide 54.0 78 0.0027 27.3 9.1 80 47-126 49-129 (154)
27 1m1j_A Fibrinogen alpha subuni 52.6 1.5E+02 0.0052 30.0 12.0 78 138-225 105-194 (491)
28 2wt7_B Transcription factor MA 52.5 39 0.0013 27.0 6.5 82 20-122 5-86 (90)
29 3cvf_A Homer-3, homer protein 49.3 36 0.0012 26.7 5.7 51 73-123 16-73 (79)
30 2e7s_A RAB guanine nucleotide 49.3 52 0.0018 28.1 7.1 47 75-121 37-83 (135)
31 3okq_A BUD site selection prot 49.2 67 0.0023 27.7 7.9 44 220-266 51-94 (141)
32 1wt6_A Myotonin-protein kinase 48.7 43 0.0015 26.7 6.1 23 73-95 48-70 (81)
33 3cl3_D NF-kappa-B essential mo 48.5 28 0.00095 29.8 5.3 122 44-179 4-127 (130)
34 2zuo_A MVP, major vault protei 47.4 2.9E+02 0.0098 29.7 13.7 47 186-232 794-849 (861)
35 3cvf_A Homer-3, homer protein 47.1 49 0.0017 25.9 6.2 39 156-194 15-53 (79)
36 3swy_A Cyclic nucleotide-gated 46.6 32 0.0011 24.7 4.6 39 158-197 2-45 (46)
37 3bas_A Myosin heavy chain, str 46.2 98 0.0033 23.7 8.5 40 81-120 18-57 (89)
38 3tnu_B Keratin, type II cytosk 42.7 1.3E+02 0.0044 24.0 8.3 77 37-123 38-117 (129)
39 2e7s_A RAB guanine nucleotide 42.5 1.2E+02 0.0041 25.8 8.3 52 45-96 35-86 (135)
40 3m9b_A Proteasome-associated A 40.3 34 0.0012 31.7 5.0 29 1-29 1-29 (251)
41 3b8m_A Ferric enterobactin (en 39.3 57 0.0019 29.4 6.2 42 249-290 156-198 (280)
42 3tnu_A Keratin, type I cytoske 38.4 1.5E+02 0.0052 23.7 8.3 76 38-123 41-119 (131)
43 4aj5_1 SKA3, spindle and kinet 37.9 1.7E+02 0.0058 24.1 8.3 81 79-159 15-96 (101)
44 3swf_A CGMP-gated cation chann 36.1 57 0.002 25.5 5.0 42 158-200 4-50 (74)
45 3qwe_A GMIP, GEM-interacting p 35.9 2.7E+02 0.0091 25.7 13.4 108 181-314 111-223 (279)
46 1sig_A Sigma70, RNA polymerase 34.7 2.4E+02 0.0083 25.0 10.7 66 147-227 141-209 (339)
47 3b8o_A Lipopolysaccharide bios 34.1 38 0.0013 30.2 4.1 42 249-290 141-183 (265)
48 2z5i_A TM, general control pro 33.2 41 0.0014 24.1 3.5 26 69-94 3-29 (52)
49 1t3j_A Mitofusin 1; coiled coi 32.9 43 0.0015 27.2 3.9 32 236-267 53-90 (96)
50 3cve_A Homer protein homolog 1 30.8 73 0.0025 24.6 4.7 39 156-194 9-47 (72)
51 3qh9_A Liprin-beta-2; coiled-c 30.4 1.2E+02 0.0042 24.1 6.1 48 46-100 23-70 (81)
52 2xv5_A Lamin-A/C; structural p 29.8 1.8E+02 0.0063 22.0 7.3 61 37-104 7-67 (74)
53 3ol1_A Vimentin; structural ge 29.2 2.2E+02 0.0075 22.7 7.7 11 112-122 108-118 (119)
54 2efr_A General control protein 28.9 2.8E+02 0.0094 23.8 13.6 53 73-129 38-94 (155)
55 3ghg_C Fibrinogen gamma chain; 28.9 4.2E+02 0.014 25.9 12.2 42 279-320 94-135 (411)
56 3oja_A Leucine-rich immune mol 28.7 3.4E+02 0.012 24.8 9.9 8 163-170 479-486 (487)
57 2bnx_A Diaphanous protein homo 28.3 22 0.00077 33.0 1.8 52 23-86 319-370 (386)
58 3s4r_A Vimentin; alpha-helix, 28.3 91 0.0031 24.3 5.0 17 108-124 52-68 (93)
59 4etp_A Kinesin-like protein KA 28.1 1.9E+02 0.0064 27.3 8.0 57 257-313 5-61 (403)
60 4h22_A Leucine-rich repeat fli 27.4 81 0.0028 26.0 4.7 75 37-122 8-82 (103)
61 1m1j_C Fibrinogen gamma chain; 27.1 4.1E+02 0.014 25.7 10.3 25 258-282 108-132 (409)
62 2j63_A AP-endonuclease; base e 26.5 14 0.00047 35.4 0.0 34 1-34 21-54 (467)
63 2nox_A Tryptophan 2,3-dioxygen 25.9 3E+02 0.01 25.3 8.7 121 47-212 64-185 (281)
64 2ocy_A RAB guanine nucleotide 25.6 3.2E+02 0.011 23.5 14.9 77 43-121 14-95 (154)
65 1t3j_A Mitofusin 1; coiled coi 25.1 1.4E+02 0.0048 24.2 5.6 47 49-112 32-78 (96)
66 2nrj_A HBL B protein; enteroto 24.5 4.2E+02 0.014 24.5 15.5 68 31-101 126-193 (346)
67 1f5n_A Interferon-induced guan 24.3 5.4E+02 0.018 25.6 12.0 59 38-96 462-520 (592)
68 3m0d_C TNF receptor-associated 24.2 2.1E+02 0.0071 20.8 6.7 57 28-91 6-62 (65)
69 2lic_A Vitellogenin; lipid tra 23.8 35 0.0012 23.5 1.6 15 6-20 10-24 (35)
70 3m91_A Proteasome-associated A 23.7 2.1E+02 0.0072 20.7 6.4 37 261-297 8-44 (51)
71 4e29_A Chimeric WZZB chain len 23.4 1.5E+02 0.0053 26.8 6.2 41 250-290 123-164 (248)
72 1deq_A Fibrinogen (alpha chain 23.1 5.5E+02 0.019 25.3 11.3 16 187-202 54-69 (390)
73 1yke_B RNA polymerase II holoe 22.6 61 0.0021 27.4 3.2 51 85-135 93-143 (151)
74 3vp9_A General transcriptional 22.2 3.1E+02 0.01 22.0 7.6 66 25-100 22-91 (92)
75 3bbp_D GRIP and coiled-coil do 22.0 63 0.0021 25.3 2.9 38 147-198 29-66 (71)
76 2xdj_A Uncharacterized protein 21.1 2.9E+02 0.0099 21.3 7.1 46 75-120 25-70 (83)
77 1m46_B IQ4, IQ4 motif from MYO 20.5 63 0.0022 21.0 2.2 20 170-190 6-25 (26)
78 2pnv_A Small conductance calci 20.3 59 0.002 23.0 2.3 33 144-179 9-41 (43)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.42 E-value=0.03 Score=44.42 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=11.0
Q ss_pred HHHhHHHHhHHHHHHHHHHHHHhhhhh
Q 018655 35 EKKQSFRKNVVSLAAELKEVRTRLASQ 61 (352)
Q Consensus 35 EKK~sfRrNVvslAaELK~~R~rLasQ 61 (352)
.|=.+++..+..+-.++.++...++.-
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l 32 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAA 32 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.23 E-value=0.00069 Score=70.80 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 018655 307 KELRDQL 313 (352)
Q Consensus 307 KElrdq~ 313 (352)
.+|++++
T Consensus 1154 e~L~~~I 1160 (1184)
T 1i84_S 1154 EALKTEL 1160 (1184)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.74 E-value=0.0035 Score=65.63 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018655 257 TKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQL 313 (352)
Q Consensus 257 TKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~ 313 (352)
.++++.+++..+..-+++..++-.+|--+++.+.++..++.....-.+.++++..++
T Consensus 1069 l~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~ei 1125 (1184)
T 1i84_S 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125 (1184)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666776666666666655443333333344444433
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.00 E-value=7.6 Score=34.04 Aligned_cols=119 Identities=22% Similarity=0.291 Sum_probs=76.0
Q ss_pred chhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhcc-CchhHHhhhhhhh
Q 018655 155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV-SPKNFERINKLLV 233 (352)
Q Consensus 155 sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~ev-spknfe~in~lL~ 233 (352)
-++++...|..|..++..++..+.+-.---..++.++-++|.||-+.-++.... .+-++.| +||-|+.+.+=+.
T Consensus 26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~-----~~~l~~v~~~kE~~aL~kEie 100 (256)
T 3na7_A 26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI-----QKKMSEIKSERELRSLNIEED 100 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHccCCHHHHHHHHHHHH
Confidence 344456677778888888888888888888888889999999998877666432 2233444 6777888877776
Q ss_pred cchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 018655 234 VKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEAR 289 (352)
Q Consensus 234 ~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaR 289 (352)
.-..+|..|.++|. ++..+++.....-.+++.++-.++=-|.+.+
T Consensus 101 ~~~~~i~~lE~eil-----------e~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 101 IAKERSNQANREIE-----------NLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777664 3334444444444444444444444443333
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.39 E-value=6 Score=32.05 Aligned_cols=28 Identities=29% Similarity=0.276 Sum_probs=14.0
Q ss_pred HHhhhHHHHHHhhhchHHHHHHHHHHHh
Q 018655 67 KETLTRQEAEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 67 kEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (352)
++...|++.|.+...+..|+..|+..|+
T Consensus 31 k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 31 KSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.74 E-value=9.9 Score=33.33 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=17.7
Q ss_pred hHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhH
Q 018655 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (352)
Q Consensus 237 ~eIakLrdeirimSaHW~~KTKELEsQlekqr 268 (352)
.+++.+..++.=+-+++.....+++..+..-.
T Consensus 125 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 125 EKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666655554433
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.49 E-value=7.5 Score=39.70 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHH
Q 018655 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLE 265 (352)
Q Consensus 186 QLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQle 265 (352)
+|+.-+.+.|+|++..| +||++-++++ -+|+..++.....+-+++ +.+-+.-- +.+
T Consensus 50 rLQglLdkqErDltkrI--------NELKnqLEdl-sKnsKdseqy~k~~~E~L--------------r~rq~q~~-dNd 105 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI--------NKLKNSLFEY-QKNNKDSHSLTTNIMEIL--------------RGDFSSAN-NRD 105 (562)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHTHH-HHHHHHHHHHHHHHHHTT--------------SSHHHHHH-HHH
T ss_pred chhhhHHhhcCcHHHHH--------HHHHHHHHHH-HhhchhHHHHHHHHHHHH--------------HHHHHhhh-ccc
Confidence 67888899999998887 7889999999 899999988876555544 22222211 222
Q ss_pred H-hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhcccccc
Q 018655 266 K-QRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGT 324 (352)
Q Consensus 266 k-qrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~KQ~~~~~~~ 324 (352)
+ --..-+||.+++.-|+--++.-=++++-||..-+.--.-|+.|---|.+|-..|-..+
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsC 165 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSC 165 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 1122336666666666666666677777776665555557777777777766665554
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.67 E-value=19 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018655 257 TKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (352)
Q Consensus 257 TKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqr 297 (352)
..+++.+.+.....-+.+++.+..+|==+++.+.++..+++
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 33444444444455555566666666666666665555443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.62 E-value=68 Score=38.41 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=31.5
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhh
Q 018655 77 MKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR 118 (352)
Q Consensus 77 ~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lR 118 (352)
.|...-.+.|..||+.|.++..+|......|++.+.++..=.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~ 1968 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677888888888888888888888888887765433
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.63 E-value=24 Score=37.52 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=8.5
Q ss_pred hchHHHHHHHHHHHhhh---hhhhhhhhcc-HHHHHHHhhhhhhhhhHh
Q 018655 80 KNMEDEICKLQKTLEER---NGRLQASACT-AEKYLMQLDGLRSQLAAT 124 (352)
Q Consensus 80 k~ME~Ei~kLqK~Ledk---~~QL~as~~s-tek~l~eLd~lRsQLs~t 124 (352)
..||.+|..|+.+|++. +..|+..... .++...|...|+.++...
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666677777666543 3333333221 123445555555444433
No 11
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=80.32 E-value=0.73 Score=32.39 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.2
Q ss_pred HhhhhhhhcchhHhhhhhhHH
Q 018655 226 ERINKLLVVKDEEIHKLKDEI 246 (352)
Q Consensus 226 e~in~lL~~kD~eIakLrdei 246 (352)
+++-+-+..||+|||+||.|=
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 577888999999999999863
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.43 E-value=19 Score=33.58 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=9.8
Q ss_pred HHHHHHHHhHhhHHHHHHH
Q 018655 259 ELESQLEKQRRADQELKKR 277 (352)
Q Consensus 259 ELEsQlekqrR~dQELKKr 277 (352)
++|.++++++..-+|+|+.
T Consensus 548 ~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHH
Confidence 4455555555555555544
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.80 E-value=28 Score=28.10 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=59.4
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhh
Q 018655 79 AKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKE 158 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkE 158 (352)
.+.|++++.+|...|+.-.....---..-.++..|..+|..||.+.+.+..-.-.-...-+.+...|-+.|++-..-|-+
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888887764433333333344557788888888888877664332333333344555666777777778888
Q ss_pred hhhHhhhhHHhHHhHH
Q 018655 159 HEDRVTRLGQQLDNLQ 174 (352)
Q Consensus 159 hE~rV~~lgeQLd~Lq 174 (352)
-|++...|...-..++
T Consensus 95 eee~~~~L~~~kkkle 110 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887776655443333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.18 E-value=75 Score=33.87 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred hHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018655 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (352)
Q Consensus 237 ~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlq 296 (352)
..|..|.+||.-+-..-..-+||.+..-+++..+.++|..+|-.|+==.+.-|.|...|.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566777777777777778999999999998888888888877
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.04 E-value=1.8e+02 Score=34.94 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=37.0
Q ss_pred hhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 018655 232 LVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRD 311 (352)
Q Consensus 232 L~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrd 311 (352)
|..+.++++.|.+.|.-+. .+.+..-+-.+.|+..+-..+--|+-|..=+..|--=.+|=...++++..
T Consensus 2030 L~~~~~~L~~le~~l~~L~-----------~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYK-----------EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 4444555555555554433 33344444455566655555555555555555554444444455555555
Q ss_pred HH
Q 018655 312 QL 313 (352)
Q Consensus 312 q~ 313 (352)
++
T Consensus 2099 ~~ 2100 (3245)
T 3vkg_A 2099 QM 2100 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.05 E-value=8.3 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhh
Q 018655 82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (352)
Q Consensus 82 ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQ 120 (352)
-++-|+.|.++|.+++..++ .+..|||.+||=
T Consensus 38 kd~~I~eLEk~L~ekd~eI~-------~LqseLDKfrSV 69 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQ-------MLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 35668889999999998876 566788888773
No 17
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.62 E-value=51 Score=26.80 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc-cHHHHHHHhhhhhhhhhH
Q 018655 48 AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC-TAEKYLMQLDGLRSQLAA 123 (352)
Q Consensus 48 AaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~-stek~l~eLd~lRsQLs~ 123 (352)
-.+++++...+..--.-+..|-.-|..||...+.+|.|+..|--.|=+.--...|.+. ....+-...+.|+.||.-
T Consensus 18 e~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 18 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445566788889999999999999999998777555444444442 223344666777777753
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.33 E-value=24 Score=29.17 Aligned_cols=60 Identities=32% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHhhhh-hhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 018655 225 FERINK-LLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 225 fe~in~-lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQ 291 (352)
|..-|. ...=+|..|..|+-||.-+.++ ||+=.-.+++.--.|+.+|..||.=|.+.|.+
T Consensus 2 ~~~~~~~~~d~rD~~Ie~Lkreie~lk~e-------le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 2 FNSQNGVNKDEKDHLIERLYREISGLKAQ-------LENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp --------CCTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3344677899999999988764 55556667888889999999999999999855
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.48 E-value=63 Score=28.64 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=27.6
Q ss_pred hhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhh---HhhhHHH--HHHHHHHH
Q 018655 152 KNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ---KQLKDEV--FRIEQDIM 199 (352)
Q Consensus 152 K~~sLkEhE~rV~~lgeQLd~LqkdLqARE~Sq---kQLKDeV--lRIE~dIm 199 (352)
..+||.+-|.+.|..-|..-.|+-+|..++--+ --||||+ +++|-+|+
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999766322 1366663 55555554
No 20
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.95 E-value=18 Score=28.05 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=36.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhh---hhhhhhhccH----HHHHHHhhhhhhhhhH
Q 018655 73 QEAEMKAKNMEDEICKLQKTLEERN---GRLQASACTA----EKYLMQLDGLRSQLAA 123 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~---~QL~as~~st----ek~l~eLd~lRsQLs~ 123 (352)
|.+|.+-..||+.|..|+..|++-- +++++-.... .-=+.||-+||-.|+-
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7889999999999999999998754 2333333222 2245788888888764
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.60 E-value=33 Score=35.11 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=30.2
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhcC------------cchhhHHHhhhccCchhHH
Q 018655 182 SSQKQLKDEVFRIEQDIMQTIAKAGV------------NKDCELRKLLDEVSPKNFE 226 (352)
Q Consensus 182 ~SqkQLKDeVlRIE~dIm~A~akag~------------~~~~El~kil~evspknfe 226 (352)
-+.+.++-++.|+|.||--.+..-.. .--.+++|-|..|..+|..
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Confidence 34456677899999999766654321 1235688888888777653
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.35 E-value=44 Score=32.84 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=26.8
Q ss_pred hhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhh-----------hHhhhHHHHHHHHHH
Q 018655 151 EKNSSLKEHEDRVTRLGQQLDNLQKDLQARESS-----------QKQLKDEVFRIEQDI 198 (352)
Q Consensus 151 eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~S-----------qkQLKDeVlRIE~dI 198 (352)
.+-..-.+.+..++.+.+.|..-+.+|+-+=-. .+.++-++.|||.||
T Consensus 99 ~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 99 GDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555544444443322 234566788999999
No 23
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.63 E-value=60 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=18.3
Q ss_pred HHHHhhhHHHHHHhhhchHHHHHHHHHH
Q 018655 65 FVKETLTRQEAEMKAKNMEDEICKLQKT 92 (352)
Q Consensus 65 ~~kEt~tRk~AE~kak~ME~Ei~kLqK~ 92 (352)
+.++...|++-|.+...+..|...|+..
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777666544
No 24
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=56.03 E-value=18 Score=24.61 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 018655 259 ELESQLEKQRRADQELKKRVLKLEFCLQ 286 (352)
Q Consensus 259 ELEsQlekqrR~dQELKKrVlKLEfcLq 286 (352)
.||..+.+-....|+|.+||-+||=..|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677778888899999999999998877
No 25
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=54.67 E-value=80 Score=26.17 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=68.8
Q ss_pred hhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccH
Q 018655 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTA 107 (352)
Q Consensus 28 PLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~st 107 (352)
|-+..|-.|=..|.+.|.....-+..+.. .+..|.. .. ......+...++.--..|......|-..|. ..
T Consensus 53 ~~v~~ll~kh~~~e~ei~~~~~~v~~~~~----~~~~~~~-~~-~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le----~l 122 (224)
T 2iak_A 53 PSVESHLENHKNVHRAIEEFESSLKEAKI----SEIQMTA-PL-KLSYTDKLHRLESQYAKLLNTSRNQERHLD----TL 122 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH----HGGGCCT-TH-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 34556666777777777776666655432 2233321 11 223445566667777777777777888887 77
Q ss_pred HHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhH
Q 018655 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLG 167 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lg 167 (352)
.+|..+++++-+=+.-....+.+.-- ..+ -..+..|.+....-.+.|..|+.+|+.+-
T Consensus 123 ~~F~~~~~~~~~Wi~eke~~~~s~d~-g~~-l~~v~~L~~kh~~l~~el~~~~~~v~~v~ 180 (224)
T 2iak_A 123 HNFVTRATNELIWLNEKEESEVAYDW-SER-NSSVARKKSYHAELMRELEQKEESIKAVQ 180 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC-----------------CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88998888887776665554322111 111 11344555555555555666666666553
No 26
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.95 E-value=78 Score=27.33 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc-cHHHHHHHhhhhhhhhhHhH
Q 018655 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC-TAEKYLMQLDGLRSQLAATK 125 (352)
Q Consensus 47 lAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~-stek~l~eLd~lRsQLs~tq 125 (352)
|..+++++...+..--.-+..|..-|..||...+.+|.|+..|--.|=+.--...|.+. ....+=...+.|+.||.-+.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555677888889999999999999998887666443333333221 11223344555566655544
Q ss_pred h
Q 018655 126 A 126 (352)
Q Consensus 126 a 126 (352)
.
T Consensus 129 ~ 129 (154)
T 2ocy_A 129 T 129 (154)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.61 E-value=1.5e+02 Score=29.99 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhc-----------
Q 018655 138 AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG----------- 206 (352)
Q Consensus 138 aqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag----------- 206 (352)
-.--|..+..+|..+..-|++ +|+.--.+|..||+.|. .++-++.|+|.||.-.+..-.
T Consensus 105 ndn~~~e~S~eLe~ri~yIK~---kVd~qi~~IrvLq~~l~-------~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~V 174 (491)
T 1m1j_A 105 LDENYGHVSTELRRRIVTLKQ---RVATQVNRIKALQNSIQ-------EQVVEMKRLEVDIDIKIRACKGSCARSFDYQV 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCC
T ss_pred chhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcchhhhhHHhhh
Confidence 334455555666655555554 33333355566665553 566788999999987776432
Q ss_pred -CcchhhHHHhhhccCchhH
Q 018655 207 -VNKDCELRKLLDEVSPKNF 225 (352)
Q Consensus 207 -~~~~~El~kil~evspknf 225 (352)
.....+++|.|.-|..+|.
T Consensus 175 D~~~Ye~~QKqLeQv~a~dL 194 (491)
T 1m1j_A 175 DKEGYDNIQKHLTQASSIDM 194 (491)
T ss_dssp CTTTTHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHhhcccc
Confidence 2445678999988866553
No 28
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.46 E-value=39 Score=27.01 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=53.9
Q ss_pred CCCccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 018655 20 SVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (352)
Q Consensus 20 s~~~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~Q 99 (352)
+.|++|+|-+|+.|+..- .+.||+-|-+|- -.-+|+=.-+++..+. ..+|.|++.|+..++.--.+
T Consensus 5 ~msVreLN~~L~gls~ee----------v~~lKq~RRtlK--NRgyAq~CR~Kr~~q~--~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 5 SMSVRELNRHLRGFTKDE----------VIRLKQKRRTLK--NRGYAQSCRYKRVQQK--HHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HSCHHHHHTTCTTCCHHH----------HHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHH----------HHHHHHHHHhhh--hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 467889999998777543 357888887774 3556666666666544 67889998887666543333
Q ss_pred hhhhhccHHHHHHHhhhhhhhhh
Q 018655 100 LQASACTAEKYLMQLDGLRSQLA 122 (352)
Q Consensus 100 L~as~~stek~l~eLd~lRsQLs 122 (352)
+ ..+..|+|.++..+.
T Consensus 71 ~-------~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 71 V-------SRLARERDAYKVKSE 86 (90)
T ss_dssp H-------HHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHH
Confidence 3 334566666666554
No 29
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.31 E-value=36 Score=26.70 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=36.6
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhh---hhhhhhhccHH----HHHHHhhhhhhhhhH
Q 018655 73 QEAEMKAKNMEDEICKLQKTLEERN---GRLQASACTAE----KYLMQLDGLRSQLAA 123 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~---~QL~as~~ste----k~l~eLd~lRsQLs~ 123 (352)
|.+|.+-..||+.|..|+..|++-- +++++-....- -=+.||-+||-.|+-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7889999999999999999998754 33333333322 245788888888874
No 30
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.26 E-value=52 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhh
Q 018655 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (352)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQL 121 (352)
+.+.....+.|+.+|+..|.+-..+=...-..-.+.-.||++|=..|
T Consensus 37 l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 37 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666554443333333334446666665544
No 31
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=49.22 E-value=67 Score=27.68 Aligned_cols=44 Identities=32% Similarity=0.512 Sum_probs=36.8
Q ss_pred cCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHH
Q 018655 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEK 266 (352)
Q Consensus 220 vspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlek 266 (352)
.+|+.++.+.+.+..-..++.++.+=|...-++|+ |--|+.|++
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WK---KiWE~EL~~ 94 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWK---KTWEAELDK 94 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhH---HHHHHHHHH
Confidence 57889999999999999999999999999999997 344444444
No 32
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.66 E-value=43 Score=26.70 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred HHHHHhhhchHHHHHHHHHHHhh
Q 018655 73 QEAEMKAKNMEDEICKLQKTLEE 95 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Led 95 (352)
++||.+-+.++.||.+|.+.+++
T Consensus 48 ~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988
No 33
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=48.46 E-value=28 Score=29.84 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhH
Q 018655 44 VVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (352)
Q Consensus 44 VvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~ 123 (352)
|.||-.||.++-++|-.-++- ++.-+.|.+..|.....+.-.+++---|+ .+.-++..-.+..+.+.|--
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~-------k~~Leek~~~~e~~~~~~~~Elee~kqq~---~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKE-------CQALEGRARAASEQARQLESEREALQQQH---SVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp ------------------------------------------------------CTT---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 788999999998888543322 23333444444444444444443322222 23345555666667777766
Q ss_pred hHhhhHhhHHhHHHHHHHHHH--HhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018655 124 TKATADASAASAQSAQLQCLA--LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 124 tqaTAeaSA~SAqsaqlqCl~--L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
-++.+. ..=-..||||--+ |..+.|+...+.--.-.||..+ ||+.|...|+.
T Consensus 74 Er~~~~--eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~--ql~dL~qqLq~ 127 (130)
T 3cl3_D 74 ERQAAS--EEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGM--QLEDLKQQLQQ 127 (130)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--hHHHHHHHHHH
Confidence 665533 2445778888654 5666665443433334455443 77777666654
No 34
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=47.38 E-value=2.9e+02 Score=29.74 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcchhhHHHhh--------hccCchhH-Hhhhhhh
Q 018655 186 QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLL--------DEVSPKNF-ERINKLL 232 (352)
Q Consensus 186 QLKDeVlRIE~dIm~A~akag~~~~~El~kil--------~evspknf-e~in~lL 232 (352)
.++.-|-.|-.|-..|+|+||...--.|+.=| |--||=|. -.-|.|+
T Consensus 794 kf~~~v~aig~~ti~~ia~Agpe~q~kll~~Lgl~~~litdG~sPinLf~ta~gl~ 849 (861)
T 2zuo_A 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLL 849 (861)
T ss_dssp HHHHHHHHSCTTHHHHTGGGCC----------------------------------
T ss_pred HHHHHHHhhChHHHHHHHhcChHHHHHHHHhCCCceEEecCCCChHHHHHHhhHhh
Confidence 45556777888999999999976666655432 56677774 3334443
No 35
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.11 E-value=49 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.9
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHH
Q 018655 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRI 194 (352)
|++=|.|=..|-+++..|+.+|+..-..|.+++-||.++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667788899999999999999999999888664
No 36
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.61 E-value=32 Score=24.69 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=32.5
Q ss_pred hhhhHhhhhHHhHHhHHHHHhhh-----hhhhHhhhHHHHHHHHH
Q 018655 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQD 197 (352)
Q Consensus 158 EhE~rV~~lgeQLd~LqkdLqAR-----E~SqkQLKDeVlRIE~d 197 (352)
+-|++|++|.--||.||--+ || +.||.-||-=|-.+|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~-ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF-ARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34889999999999999765 45 88999999988888863
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.17 E-value=98 Score=23.69 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhh
Q 018655 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (352)
Q Consensus 81 ~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQ 120 (352)
.|++|+.+|...|+.-.....---....+++.|-.+|-.|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887777644333322223333344444444444
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.69 E-value=1.3e+02 Score=24.05 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=43.3
Q ss_pred HhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHH---H
Q 018655 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM---Q 113 (352)
Q Consensus 37 K~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~---e 113 (352)
--.+||+|-+|-+||...++.-++-|..++ |++.|- +.++..++..+.+...+|.-.-...+..+. +
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~-e~e~~~---------~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA-DAEQRG---------ELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345799999999999999988777776654 333332 334444444444444443333333333332 3
Q ss_pred hhhhhhhhhH
Q 018655 114 LDGLRSQLAA 123 (352)
Q Consensus 114 Ld~lRsQLs~ 123 (352)
|=+++..|..
T Consensus 108 LlnvKl~Ld~ 117 (129)
T 3tnu_B 108 LMNTKLALDV 117 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 39
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.53 E-value=1.2e+02 Score=25.82 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhh
Q 018655 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (352)
Q Consensus 45 vslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk 96 (352)
-.|-.+|+++-..+..--.-+..|..-|..||...+.+|.|+..|--.|=+.
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666778888899999999999999998887666444
No 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.29 E-value=34 Score=31.71 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccCCCCCCCCCccccChh
Q 018655 1 MSASGHRSSMSTSSSSSSSSVPAREIDPL 29 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPL 29 (352)
|.+++..-...+..+.++++...+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (251)
T 3m9b_A 1 MGESERSEAFGIPRDSPLSSGDAAELEQL 29 (251)
T ss_dssp -----------------------------
T ss_pred CCCccchhhccCCccCCCcccchHHHHHH
Confidence 33343333334444555566666666553
No 41
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=39.35 E-value=57 Score=29.44 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=37.4
Q ss_pred HhhhhhhhhHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHH
Q 018655 249 MSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARA 290 (352)
Q Consensus 249 mSaHW~~KTKELEsQlekqr-R~dQELKKrVlKLEfcLqEaRs 290 (352)
+..-|..|+..+..|++.++ ++..+..-|+-+|+..|+-|.+
T Consensus 156 l~~~i~~r~~~l~~qi~~~~~~ak~~~~~~I~rL~~AL~IA~a 198 (280)
T 3b8m_A 156 VRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANA 198 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668889999999999999 8888889999999999999988
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.38 E-value=1.5e+02 Score=23.71 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=43.3
Q ss_pred hHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHH---Hh
Q 018655 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM---QL 114 (352)
Q Consensus 38 ~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~---eL 114 (352)
.-+||+|-+|-+||...++.-++-|..++ |++.| .+.++..+|..+.+...+|.-.-...+..+. +|
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~-e~e~~---------~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLE-ETKGR---------YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999888887776665543 33332 2444445555554444444444334444443 34
Q ss_pred hhhhhhhhH
Q 018655 115 DGLRSQLAA 123 (352)
Q Consensus 115 d~lRsQLs~ 123 (352)
=+++..|..
T Consensus 111 l~vKl~Ld~ 119 (131)
T 3tnu_A 111 LDVKTRLEQ 119 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555543
No 43
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=37.90 E-value=1.7e+02 Score=24.10 Aligned_cols=81 Identities=11% Similarity=0.116 Sum_probs=52.1
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhccHHH-HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchh
Q 018655 79 AKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL~as~~stek-~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLk 157 (352)
|-++|-|-.+||..|+..+.....+...+=- ..-|+-.|..|...+-+.|.++-...-.-.=-|..|.+..-.-...++
T Consensus 15 a~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ir 94 (101)
T 4aj5_1 15 ASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4578999999999999776555433222211 124556777777777766666655555556678887777555555666
Q ss_pred hh
Q 018655 158 EH 159 (352)
Q Consensus 158 Eh 159 (352)
||
T Consensus 95 e~ 96 (101)
T 4aj5_1 95 EY 96 (101)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 44
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.14 E-value=57 Score=25.53 Aligned_cols=42 Identities=36% Similarity=0.510 Sum_probs=35.3
Q ss_pred hhhhHhhhhHHhHHhHHHHHhhh-----hhhhHhhhHHHHHHHHHHHH
Q 018655 158 EHEDRVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQDIMQ 200 (352)
Q Consensus 158 EhE~rV~~lgeQLd~LqkdLqAR-----E~SqkQLKDeVlRIE~dIm~ 200 (352)
+-|.+|++|.--||.||--+ || +.||.-||-=|-.+|.-+-.
T Consensus 4 dlEEKv~~LE~sld~LQTrf-ARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRF-ARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45889999999999999765 45 89999999999999986543
No 45
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=35.89 E-value=2.7e+02 Score=25.74 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=65.1
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhH-HHHHhhhhhhhhHH
Q 018655 181 ESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE-IKIMSAHWKLKTKE 259 (352)
Q Consensus 181 E~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrde-irimSaHW~~KTKE 259 (352)
+-+-|++|++.+|.|+.+.+|++-+.. --...+-.-+|..|+|.. .+-=+.||. +.
T Consensus 111 ek~RK~~Ke~w~r~eKk~~dae~~l~K--------------------AK~~Y~~r~ee~ekak~~~~~~e~~q~~---~~ 167 (279)
T 3qwe_A 111 EKWRKEFKEQWMKEQKRMNEAVQALRR--------------------AQLQYVQRSEDLRARSQGSPEDSAPQAS---PG 167 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCcccccccc---cc
Confidence 446789999999999999999864432 222233333444444431 111112332 11
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 018655 260 LESQLEKQRRADQELKKRVLKLE----FCLQEARAQTRKLQRMGERRDKAIKELRDQLA 314 (352)
Q Consensus 260 LEsQlekqrR~dQELKKrVlKLE----fcLqEaRsQtrKlqrmgErRDkalKElrdq~a 314 (352)
-=.+++|-||-..|+..||-.-+ =|++++.++-.-|... |-.+++.||+-|-
T Consensus 168 ~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~t---k~~~v~~Lr~LI~ 223 (279)
T 3qwe_A 168 PSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIA---KQRIVSHVRKLVF 223 (279)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 12356778888888888886654 4888888888888653 5778888887664
No 46
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=34.66 E-value=2.4e+02 Score=24.95 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=41.2
Q ss_pred hhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHH-hcCcchhhHHHhh--hccCch
Q 018655 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK-AGVNKDCELRKLL--DEVSPK 223 (352)
Q Consensus 147 keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ak-ag~~~~~El~kil--~evspk 223 (352)
.+|.+--.+++=+--++.+|.++|-.. -+.|...|+.||+-... +|-.. .++.+.. ++..|.
T Consensus 141 ~~l~~~~~~ikl~~k~id~Lv~~lr~~--------------~~~ir~~Er~i~~l~v~~~~mpr-~~fi~~f~g~e~~~~ 205 (339)
T 1sig_A 141 LKLSEVFKQFRLVPKQFDYLVNSMRVM--------------MDRVRTQERLIMKLCVEQCKMPK-KNFITLFTGNETSDT 205 (339)
T ss_dssp HHHHHHHTTEEECHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTTSCCCH-HHHHHHHTTTCSSGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHcccccCcHH
Confidence 334445566777777888888876443 36788899999997644 45433 3566654 344454
Q ss_pred hHHh
Q 018655 224 NFER 227 (352)
Q Consensus 224 nfe~ 227 (352)
.++.
T Consensus 206 w~~~ 209 (339)
T 1sig_A 206 WFNA 209 (339)
T ss_dssp GTHH
T ss_pred HHHH
Confidence 4443
No 47
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=34.08 E-value=38 Score=30.16 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=31.5
Q ss_pred HhhhhhhhhHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHH
Q 018655 249 MSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARA 290 (352)
Q Consensus 249 mSaHW~~KTKELEsQlekqr-R~dQELKKrVlKLEfcLqEaRs 290 (352)
+..-|..|++.|..|+..++ ++..+...|+.+|+..|+-|.+
T Consensus 141 l~~~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~IA~a 183 (265)
T 3b8o_A 141 LKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQ 183 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999 8888899999999999999976
No 48
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.22 E-value=41 Score=24.10 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=18.0
Q ss_pred hhhH-HHHHHhhhchHHHHHHHHHHHh
Q 018655 69 TLTR-QEAEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 69 t~tR-k~AE~kak~ME~Ei~kLqK~Le 94 (352)
..|| .+||.....+|.+|.+|...|.
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 6788777777777777766554
No 49
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.89 E-value=43 Score=27.19 Aligned_cols=32 Identities=41% Similarity=0.515 Sum_probs=25.4
Q ss_pred hhHhhhhhhHHHHH------hhhhhhhhHHHHHHHHHh
Q 018655 236 DEEIHKLKDEIKIM------SAHWKLKTKELESQLEKQ 267 (352)
Q Consensus 236 D~eIakLrdeirim------SaHW~~KTKELEsQlekq 267 (352)
.+||+.|..+|..| +-.|+||.--|+++|+.=
T Consensus 53 ~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36777777777665 568999999999999863
No 50
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.84 E-value=73 Score=24.60 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=31.1
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHH
Q 018655 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRI 194 (352)
|++=|.+=..|-+++..|+.+|+.....|.+++-|+.++
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666788888999999999989999998887664
No 51
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.40 E-value=1.2e+02 Score=24.08 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 018655 46 SLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (352)
Q Consensus 46 slAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL 100 (352)
-|--|+++.|.|+..-|-- |---|.|.|+--+||+-||+.|+.++..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnE-------rlQyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE-------RNQYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 5788999999998765532 34467888888899999999999998643
No 52
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.79 E-value=1.8e+02 Score=22.04 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=41.2
Q ss_pred HhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh
Q 018655 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA 104 (352)
Q Consensus 37 K~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~ 104 (352)
.+.++.-+..|-+||.++|.-++.|-+-+ ++..+=|. .+|.||.--.+.|+.....+..+.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl------~Le~EIatYRkLLEGEe~Rl~~~~ 67 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKL------ALDMEIHAYRKLLEGEEERLRLSP 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHhcCccccCCCC
Confidence 46677788889999999999999886665 55555443 489999999999987766655443
No 53
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.25 E-value=2.2e+02 Score=22.74 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=6.1
Q ss_pred HHhhhhhhhhh
Q 018655 112 MQLDGLRSQLA 122 (352)
Q Consensus 112 ~eLd~lRsQLs 122 (352)
.|+.+|++|++
T Consensus 108 eEl~eLq~qi~ 118 (119)
T 3ol1_A 108 EEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHHHHhc
Confidence 46666666653
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.87 E-value=2.8e+02 Score=23.78 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhcc----HHHHHHHhhhhhhhhhHhHhhhH
Q 018655 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACT----AEKYLMQLDGLRSQLAATKATAD 129 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~s----tek~l~eLd~lRsQLs~tqaTAe 129 (352)
..||.|.+.||+|+.-....|.. |.++..- -++|-.++..|..+|--+-.-|+
T Consensus 38 e~aE~k~~eLEeeL~~v~~nlKs----LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVTNNLKS----LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666554433322 1221111 22355555555555554444333
No 55
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.86 E-value=4.2e+02 Score=25.88 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhcc
Q 018655 279 LKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDA 320 (352)
Q Consensus 279 lKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~KQ~~~ 320 (352)
.++|--+.-..++++.||.+-+..+..|.+|++.+..-.+.+
T Consensus 94 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 94 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555556666666666666666666666665444433
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.71 E-value=3.4e+02 Score=24.80 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=3.1
Q ss_pred hhhhHHhH
Q 018655 163 VTRLGQQL 170 (352)
Q Consensus 163 V~~lgeQL 170 (352)
-..|++||
T Consensus 479 ~~~~~~~~ 486 (487)
T 3oja_A 479 EQNLASQL 486 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 33344443
No 57
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=28.33 E-value=22 Score=33.04 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=10.5
Q ss_pred ccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHH
Q 018655 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEI 86 (352)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei 86 (352)
.-.+++|+.+|.++. ++.++..+-..=.+-|.+++..|++|+.|...+|+|+
T Consensus 319 ~~~v~~l~d~l~~~~------------~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~ 370 (386)
T 2bnx_A 319 QIDIERLVDQMIDKT------------KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDF 370 (386)
T ss_dssp CCCCTTTC-----CT------------HHHHHHTTTCC--------------------------
T ss_pred cchHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467788998888764 2223333333335568889999999999999999975
No 58
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.29 E-value=91 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhhhhhHh
Q 018655 108 EKYLMQLDGLRSQLAAT 124 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~t 124 (352)
..|-.++.+||.|+..+
T Consensus 52 ~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44888999999988754
No 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.13 E-value=1.9e+02 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018655 257 TKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQL 313 (352)
Q Consensus 257 TKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~ 313 (352)
.-+|+.+++.-++.-.+|...+-.++.++++...++++-+.+..+-.-.|.|++..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 345666777777777888888889999999998888877765544444566666544
No 60
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.42 E-value=81 Score=26.01 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=49.3
Q ss_pred HhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhh
Q 018655 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDG 116 (352)
Q Consensus 37 K~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~ 116 (352)
-..||+..||-|. |-.=++-|.=|=..+- -+.-.||+.+..+++.+.++.-.+...--+....-.+++.
T Consensus 8 EEKyrKAMVsnAQ-LDNEKsal~YqVdlLK----------D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 8 EEKYKKAMVSNAQ-LDNEKTNFMYQVDTLK----------DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp CCTHHHHHHHHHH-HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999998763 4444444443333222 3445688888899999999887777766666666677777
Q ss_pred hhhhhh
Q 018655 117 LRSQLA 122 (352)
Q Consensus 117 lRsQLs 122 (352)
||.||.
T Consensus 77 lk~~L~ 82 (103)
T 4h22_A 77 VKEALK 82 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 61
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.10 E-value=4.1e+02 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=13.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHH
Q 018655 258 KELESQLEKQRRADQELKKRVLKLE 282 (352)
Q Consensus 258 KELEsQlekqrR~dQELKKrVlKLE 282 (352)
..|+.+++.+...-++|+..|..|+
T Consensus 108 ~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 108 QQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
No 62
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=26.53 E-value=14 Score=35.40 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccCCCCCCCCCccccChhhhhhH
Q 018655 1 MSASGHRSSMSTSSSSSSSSVPAREIDPLLKDLN 34 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~sss~~~~elDPLLkDL~ 34 (352)
|.+-.||-+.+.|.|++.||.+..||-|+-|--.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (467)
T 2j63_A 21 MASKRCRQCSGDSASSSTSSLSPSELPPSKKAAG 54 (467)
T ss_dssp ----------------------------------
T ss_pred hhhhhhhhccCCcccccccCCCccccCccccccC
Confidence 4455688888888888888999999999866543
No 63
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=25.85 E-value=3e+02 Score=25.30 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHh
Q 018655 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKA 126 (352)
Q Consensus 47 lAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqa 126 (352)
+..||..|+..+..-+..-+ -.+=.-|.+.++.|.+--.=| .++|++.|+ .+|..|.
T Consensus 64 il~El~~a~~~l~~~~~~~a-------------~~~L~Rv~~i~~~L~~~~~vL--~tMtp~dF~----~FR~~Lg---- 120 (281)
T 2nox_A 64 MLHELRAARDGVKSDQLQPA-------------FKMLARVSRIMDQLVQAWNVL--ATMTPPEYS----AMRPYLG---- 120 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-------------HHHHHHHHHHHHHHHHTHHHH--TTCCHHHHH----HHGGGTT----
T ss_pred HHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH----HHHHhcC----
Confidence 45677778777764322211 122334667777777766666 678999998 4677665
Q ss_pred hhHhhHHhHHHHHHHHHHHhhhhhhhhc-chhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHh
Q 018655 127 TADASAASAQSAQLQCLALVKELDEKNS-SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (352)
Q Consensus 127 TAeaSA~SAqsaqlqCl~L~keL~eK~~-sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~aka 205 (352)
.|| -.||+|..++..+=.. |+. .++-|+. -.+. ...|.+. ....-|.|+|++ .++..
T Consensus 121 --~aS--GFQS~qyR~iE~~lG~--k~~~~l~~~~~----~p~~----~~~l~~~-~~~pSL~d~~~~-------~L~r~ 178 (281)
T 2nox_A 121 --ASS--GFQSYQYREIEFILGN--KNAAMLRPHAH----RPEH----LELVETA-LHTPSMYDEAIR-------LMARR 178 (281)
T ss_dssp --TCC--GGGCHHHHHHHHHTTC--CCGGGGGGGTT----CHHH----HHHHHHH-HHSCCHHHHHHH-------HHHHT
T ss_pred --Ccc--hhhHHHHHHHHHHhCC--CcHHHhccccc----CHHH----HHHHHHH-hcCCCHHHHHHH-------HHHHc
Confidence 334 4599999999876442 333 3343421 2222 3333333 333446777764 45566
Q ss_pred cCcchhh
Q 018655 206 GVNKDCE 212 (352)
Q Consensus 206 g~~~~~E 212 (352)
|.....+
T Consensus 179 G~~~~~~ 185 (281)
T 2nox_A 179 GFQIDPE 185 (281)
T ss_dssp TCCCCHH
T ss_pred CCCCchh
Confidence 7765543
No 64
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.62 E-value=3.2e+02 Score=23.50 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhh-----HHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhh
Q 018655 43 NVVSLAAELKEVRTRLASQEQC-----FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGL 117 (352)
Q Consensus 43 NVvslAaELK~~R~rLasQEq~-----~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~l 117 (352)
+...|-.+|-.+|..|.++.-- ..++ ....++..-+..+.|+.+|+..|.+-..+=...-..-.+.=.||++|
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~--~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKE--DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666543221 1222 11224444567888999998888776554444334444555899998
Q ss_pred hhhh
Q 018655 118 RSQL 121 (352)
Q Consensus 118 RsQL 121 (352)
=..|
T Consensus 92 TasL 95 (154)
T 2ocy_A 92 TASL 95 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 65
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.07 E-value=1.4e+02 Score=24.18 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHH
Q 018655 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (352)
Q Consensus 49 aELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~ 112 (352)
.||..+.+||-.| +..--..||+||..|.+.+. +|..-.+.+-.+.+
T Consensus 32 qELs~tfarLc~~-------------Vd~t~~eL~~EI~~L~~eI~----~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 32 QEMATTFARLCQQ-------------VDMTQKHLEEEIARLSKEID----QLEKMQNNSKLLRN 78 (96)
T ss_dssp ---CCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHH
Confidence 4666666666544 33334567777777665543 34444444444333
No 66
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.55 E-value=4.2e+02 Score=24.47 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=41.6
Q ss_pred hhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh
Q 018655 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 31 kDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
.+|..-=.....++-.+..+|++-|+.|....+.|-.=.. .+......-...|..||+.++.-+.++.
T Consensus 126 ~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~---~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 126 TDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKE---LLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHH---HHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3444344445556777888899999999888888753222 1333344444556677777766555553
No 67
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.28 E-value=5.4e+02 Score=25.63 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=44.0
Q ss_pred hHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhh
Q 018655 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEER 96 (352)
Q Consensus 38 ~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk 96 (352)
+.|.++..+++.-+-++-..|...|...+.|-.-+..||..++-+|+--.+++..++.+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888887777777777776666666555665555544
No 68
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=24.20 E-value=2.1e+02 Score=20.81 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHH
Q 018655 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQK 91 (352)
Q Consensus 28 PLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK 91 (352)
.||..|..|...|...|.++.-|++.....+..=.+... ....+..++|..|..++-
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~-------~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQ-------LDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHh
Confidence 477888999999998888877777777666653221111 123344455555655553
No 69
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=23.80 E-value=35 Score=23.45 Aligned_cols=15 Identities=67% Similarity=0.570 Sum_probs=7.9
Q ss_pred CCCcccccCCCCCCC
Q 018655 6 HRSSMSTSSSSSSSS 20 (352)
Q Consensus 6 ~~~~~~~~~~~~sss 20 (352)
-|...|||||+-|||
T Consensus 10 lrtdistssssisss 24 (35)
T 2lic_A 10 LRTDISTSSSSISSS 24 (35)
T ss_dssp CSSSSCSCSSCCSTT
T ss_pred hhhcccccccccccc
Confidence 355566665554443
No 70
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.68 E-value=2.1e+02 Score=20.65 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018655 261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (352)
Q Consensus 261 EsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqr 297 (352)
|.++..-++.-+-|-+|-.+|.--|++||.|+-+|.-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666678889999999999999999887753
No 71
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=23.38 E-value=1.5e+02 Score=26.82 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=32.9
Q ss_pred hhhhhhhhHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHHH
Q 018655 250 SAHWKLKTKELESQLEKQRRADQEL-KKRVLKLEFCLQEARA 290 (352)
Q Consensus 250 SaHW~~KTKELEsQlekqrR~dQEL-KKrVlKLEfcLqEaRs 290 (352)
..-|..|+..|+.|++.++...+.- +-|+-.|+..|+-|.+
T Consensus 123 ~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~a 164 (248)
T 4e29_A 123 KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADE 164 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999998776654 4577888888888864
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.12 E-value=5.5e+02 Score=25.29 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 018655 187 LKDEVFRIEQDIMQTI 202 (352)
Q Consensus 187 LKDeVlRIE~dIm~A~ 202 (352)
|++-+...|+||+..|
T Consensus 54 Lqg~Ldk~er~~~~rI 69 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRI 69 (390)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 4445555555555555
No 73
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.59 E-value=61 Score=27.44 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhH
Q 018655 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASA 135 (352)
Q Consensus 85 Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SA 135 (352)
.|.+|++.+++...+|+....-+|..+..++++=..++.....-...++||
T Consensus 93 ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~~r~~~~~~ 143 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIANSKKSTAAA 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 355666666667777777778889999999998887776665555555444
No 74
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.24 E-value=3.1e+02 Score=22.02 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=39.4
Q ss_pred ccChhhhhhHHHH----hHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 018655 25 EIDPLLKDLNEKK----QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL 100 (352)
Q Consensus 25 elDPLLkDL~EKK----~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL 100 (352)
|.|-+..+.+-=| .-|=.-|.+=-+|+-..|+.+-.-|+-.. +.- -.-|+||.+|...|+.++.|+
T Consensus 22 Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~------kmK----q~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 22 EFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHR------KMK----DAYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHcCCCC
Confidence 4455555543222 25556677777888888887766555433 111 136999999999999999886
No 75
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.97 E-value=63 Score=25.33 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=28.1
Q ss_pred hhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHH
Q 018655 147 KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (352)
Q Consensus 147 keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dI 198 (352)
+.++--++.|.|-|--+.+|-+|.+. ||+|+-|+|++.
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~l--------------LK~EIRRlERnq 66 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKL--------------LKSEIRRLERNQ 66 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHH--------------HHHHHHHHHhhH
Confidence 34444566777888888889988875 578888888864
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.15 E-value=2.9e+02 Score=21.35 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhh
Q 018655 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (352)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQ 120 (352)
--...-.|..||..|.-.+|+-..+|.--..---.|..+||...++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345567889999999888888888876665555677788866554
No 77
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.45 E-value=63 Score=21.02 Aligned_cols=20 Identities=50% Similarity=0.757 Sum_probs=15.5
Q ss_pred HHhHHHHHhhhhhhhHhhhHH
Q 018655 170 LDNLQKDLQARESSQKQLKDE 190 (352)
Q Consensus 170 Ld~LqkdLqARE~SqkQLKDe 190 (352)
+.||||.+. +|+-|+|||.|
T Consensus 6 itnlqkkir-kelkqrqlkqe 25 (26)
T 1m46_B 6 ITNLQKKIR-KELKQRQLKQE 25 (26)
T ss_dssp HHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHHHHhcc
Confidence 567787763 68899999976
No 78
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.35 E-value=59 Score=22.97 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=25.4
Q ss_pred HHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018655 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 144 ~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
.|+-+|++.... =|.|+..|+..||.|+.-++|
T Consensus 9 dlvsel~~r~e~---LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSED---FEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 455666665544 488999999999999988875
Done!