BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018657
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 45 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 101
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 102 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA-NCKV 159
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IAAAA
Sbjct: 160 ESLAMFLGELS-----LIDADPYLKYLPSVIAAAA 189
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 39 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 95
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 96 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 153
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 154 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 183
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 48 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 104
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 105 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 162
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 163 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 192
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 99
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 100 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 157
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 158 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 187
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 44 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 100
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 101 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 158
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 159 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 188
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 99
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 100 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 157
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 158 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 187
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 42 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 98
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 99 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 156
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 157 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 186
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 97
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 98 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 155
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 156 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 185
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 97
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYL-HYFISKLPASSSEP 215
P + + ++ + K V RME V+ VL + L + T +L YF+ + PA + +
Sbjct: 98 PPEVAEF-VYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA-NCKV 155
Query: 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 156 ESLAMFLGELS-----LIDADPYLKYLPSVIAGAA 185
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 97
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPG 216
P + + ++ + K V RME V+ VL + L + T +L + L ++ +
Sbjct: 98 PPEVAEF-VYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVE 156
Query: 217 SFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 157 SLAMFLGELS-----LIDADPYLKYLPSLIAGAA 185
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 44 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 100
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPG 216
P + + ++ + K V RME V+ VL + L + T +L + L ++ +
Sbjct: 101 PPEVAEF-VYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVE 159
Query: 217 SFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 160 SLAMFLGELS-----LIDADPYLKYLPSLIAGAA 188
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK + T L+VNY DRFLSS + + G LQL+ A + LA+K EE
Sbjct: 41 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSS--MSVLRG-KLQLVGTAAMLLASKFEEIY 97
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPG 216
P + + ++ + K V RME V+ VL + L + T +L + L ++ +
Sbjct: 98 PPEVAEF-VYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVE 156
Query: 217 SFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAA 250
S FL S +L + PS IA AA
Sbjct: 157 SLAMFLGELS-----LIDADPYLKYLPSLIAGAA 185
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 88 VFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLS 147
V + R+ W+L V K L++NY DRFLS L LQLL C+
Sbjct: 52 VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS---LEPVKKSRLQLLGATCMF 108
Query: 148 LAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISK 207
+A+KM+ET +PL + P+ + +MEL +++ L W L ++TP D++ +F+SK
Sbjct: 109 VASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167
Query: 208 LPAS 211
+P +
Sbjct: 168 MPEA 171
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 88 VFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLS 147
V + R+ W+L V K L++NY DRFLS L LQLL C+
Sbjct: 38 VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS---LEPVKKSRLQLLGATCMF 94
Query: 148 LAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISK 207
+A+KM+ET +PL + P+ + +MEL +++ L W L ++TP D++ +F+SK
Sbjct: 95 VASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 153
Query: 208 LPAS 211
+P +
Sbjct: 154 MPEA 157
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 67 RESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLS 126
R+ E + P YL V R I+W++ V ++ T ++V+ DRF+
Sbjct: 13 RQLEEEQAVRPKYL---LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ 69
Query: 127 SHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFV----FEPKTVQRMEL 182
++ +P LQL+ V + +A+K EE P +I D FV + +++ME+
Sbjct: 70 NNCVPKKM---LQLVGVTAMFIASKYEEMYPP-----EIGDFAFVTDNTYTKHQIRQMEM 121
Query: 183 RVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFA 242
+++ LN+ L P +L SK+ E + ++L + L + + F
Sbjct: 122 KILRALNFGLGRPLPLHFLRR-ASKIGEVDVEQHTLAKYLMELTML------DYDMVHFP 174
Query: 243 PSTIAAAAVLCAAGESLD----SPAICH 266
PS IAA A C A + LD +P + H
Sbjct: 175 PSQIAAGA-FCLALKILDNGEWTPTLQH 201
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 67 RESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLS 126
R+ E + P YL V R I+W++ V ++ T ++V+ DRF+
Sbjct: 15 RQLEAAQAVRPKYL---LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ 71
Query: 127 SHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFV----FEPKTVQRMEL 182
++ +P LQL+ V + +A+K EE P +I D FV + +++ME+
Sbjct: 72 NNSVP---KKMLQLVGVTAMFIASKYEEMYPP-----EIGDFAFVTDNTYTKHQIRQMEM 123
Query: 183 RVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFA 242
+++ LN+ L P +L SK+ E + ++L + L + + F
Sbjct: 124 KILRALNFGLGRPLPLHFLRR-ASKIGEVDVEQHTLAKYLMELTMLD------YDMVHFP 176
Query: 243 PSTIAAAA 250
PS IAA A
Sbjct: 177 PSQIAAGA 184
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 99 WILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVP 158
W+L V + L++NY DR+LS +P LQLL C+ LA+K+ ET P
Sbjct: 77 WMLEVCEEQRCEEEVFPLAMNYLDRYLSC--VPTRKAQ-LQLLGAVCMLLASKLRET-TP 132
Query: 159 LLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSF 218
L ++ P+ ++ E+ V+ L W L ++ D+L + + +L
Sbjct: 133 LTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALV 192
Query: 219 TRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPAICHQRLNE------- 271
+ + + F + PS IA ++ AA + L + ++ L E
Sbjct: 193 KKH---AQTFLALCATDYTFAMYPPSMIATGSI-GAAVQGLGACSMSGDELTELLAGITG 248
Query: 272 ---EMVRSCHQLMEEYLIDTCPSAQVKDQSEEPQVAPPSPVG 310
+ +R+C + +E L ++ A S AP +P G
Sbjct: 249 TEVDCLRACQEQIEAALRESLREAAQTSSSP----APKAPRG 286
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ 156
++W++ V YK T L+ ++FDR++++ + LQL+ ++ L +AAK+EE
Sbjct: 54 LDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT--LLQLIGISSLFIAAKLEEIY 111
Query: 157 VPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFIS 206
P L + + MEL +M L WRL+ +T +L+ ++
Sbjct: 112 PPKLHQFA-YVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQ 160
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 37/219 (16%)
Query: 93 RQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKM 152
R++ +I +V T + YF RF H +P + CL LA K+
Sbjct: 41 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF---KQFPRYVTGACCLFLAGKV 97
Query: 153 EETQVP----------LLLDLQIFDPRFVFEPK-TVQRMELRVMSVLNWRLNSITPFDYL 201
EET LL D+Q +F +PK V +E ++ + + L P+ +L
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQF--GQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155
Query: 202 HYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAA------ 255
+ +L ++ + W+ + + TT L + P IA A + A
Sbjct: 156 LKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLS---LQWEPEIIAVAVMYLAGRLCKFE 212
Query: 256 -GESLDSPAICHQRLNEEMVRS---------CHQLMEEY 284
E P ++R E+ V+ CHQ+++ Y
Sbjct: 213 IQEWTSKPM--YRRWWEQFVQDVPVDVLEDICHQILDLY 249
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 73 HMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTA 114
++ P + CS+F + +I W LNVH +K P+ +
Sbjct: 377 RLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKS 418
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 198 FDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGE 257
FD L ++ S PG F LW + + V NF+G+A +CAA E
Sbjct: 54 FDQLSSKVAAFVPYGSNPGEFDEALW------LNSKAVANFIGYA---------VCAADE 98
Query: 258 SL 259
+L
Sbjct: 99 AL 100
>pdb|2KHV|A Chain A, Solution Nmr Structure Of Protein Nmul_a0922 From
Nitrosospira Multiformis. Northeast Structural Genomics
Consortium Target Nmr38b
Length = 106
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 161 LDLQIFDPRFVFEPKTVQRMELRVMSVLNW 190
L +++ DP + +P+T R+ R+ SVL+W
Sbjct: 51 LIMKVLDPIWEQKPETASRLRGRIESVLDW 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,135,521
Number of Sequences: 62578
Number of extensions: 331443
Number of successful extensions: 634
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 31
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)