Query 018657
Match_columns 352
No_of_seqs 316 out of 1793
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 4.7E-46 1.6E-50 352.4 25.0 224 55-288 36-268 (306)
2 2f2c_A Cyclin homolog, V-cycli 100.0 1E-43 3.6E-48 328.2 24.9 219 58-287 21-248 (254)
3 2w96_A G1/S-specific cyclin-D1 100.0 1.9E-43 6.3E-48 329.5 24.8 221 57-288 24-258 (271)
4 1f5q_B Gamma herpesvirus cycli 100.0 1.6E-44 5.5E-49 332.5 17.3 217 56-287 20-242 (252)
5 1g3n_C V-cyclin; cyclin-depend 100.0 3.8E-43 1.3E-47 325.0 23.6 220 57-287 19-248 (257)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 4.1E-42 1.4E-46 318.6 23.9 220 54-288 4-229 (260)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.1E-41 7.1E-46 317.4 22.5 221 54-287 15-242 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 9.2E-42 3.1E-46 317.7 18.0 217 55-288 5-226 (269)
9 2i53_A Cyclin K; cell cycle, t 100.0 2.7E-33 9.3E-38 258.8 18.4 194 87-287 35-251 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 1.8E-32 6.3E-37 253.2 21.6 188 89-287 27-240 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 8.7E-32 3E-36 252.3 20.5 188 90-287 40-242 (285)
12 1zp2_A RNA polymerase II holoe 100.0 9E-32 3.1E-36 245.5 18.7 183 93-287 28-220 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 1.6E-31 5.6E-36 257.6 13.6 188 89-287 34-247 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 7.1E-29 2.4E-33 236.3 19.5 194 90-287 54-261 (323)
15 1c9b_A General transcription f 99.9 1.2E-24 4.1E-29 194.5 22.9 183 92-289 4-191 (207)
16 3k7a_M Transcription initiatio 99.9 7E-24 2.4E-28 203.6 1.4 266 5-288 35-323 (345)
17 1ais_B TFB TFIIB, protein (tra 99.9 8E-21 2.8E-25 168.6 19.6 180 92-286 8-194 (200)
18 4bbr_M Transcription initiatio 99.8 6.2E-20 2.1E-24 175.8 0.7 266 6-289 36-324 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.5 1E-06 3.4E-11 81.2 11.9 110 96-210 77-187 (293)
20 1ais_B TFB TFIIB, protein (tra 96.9 0.0033 1.1E-07 54.6 9.1 90 97-193 109-198 (200)
21 1c9b_A General transcription f 95.2 0.053 1.8E-06 47.1 8.0 86 97-189 103-188 (207)
22 3h4c_A Transcription factor TF 94.6 2 6.9E-05 37.1 15.8 112 95-211 14-130 (260)
23 1dl6_A Transcription factor II 94.5 0.024 8.1E-07 39.2 2.8 31 6-37 24-57 (58)
24 3k1f_M Transcription initiatio 91.0 0.025 8.4E-07 47.7 -1.4 47 6-54 36-85 (197)
25 1zp2_A RNA polymerase II holoe 89.7 0.6 2.1E-05 41.2 6.5 83 98-188 136-218 (235)
26 2i53_A Cyclin K; cell cycle, t 89.4 1.7 5.8E-05 38.7 9.4 88 97-189 152-250 (258)
27 2ivx_A Cyclin-T2; transcriptio 89.0 1.9 6.5E-05 38.4 9.4 87 97-188 147-238 (257)
28 1pft_A TFIIB, PFTFIIBN; N-term 88.6 0.24 8.3E-06 32.8 2.3 29 6-35 18-49 (50)
29 3rgf_B Cyclin-C; protein kinas 85.7 1.5 5.2E-05 39.9 6.7 103 98-211 159-262 (285)
30 2pk2_A Cyclin-T1, protein TAT; 85.2 1.5 5.2E-05 41.4 6.7 87 98-188 155-245 (358)
31 3k7a_M Transcription initiatio 82.5 0.25 8.7E-06 46.5 0.0 84 98-188 237-320 (345)
32 4bbr_M Transcription initiatio 80.1 6.2 0.00021 37.0 8.6 83 195-286 127-215 (345)
33 2b9r_A Human cyclin B1; cell c 77.7 4.4 0.00015 36.4 6.6 82 97-185 139-220 (269)
34 2cch_B Cyclin A2, cyclin-A; co 76.4 9.5 0.00032 33.9 8.5 85 97-188 140-226 (260)
35 2f2c_A Cyclin homolog, V-cycli 74.5 12 0.00042 33.0 8.6 85 98-188 154-246 (254)
36 1g3n_C V-cyclin; cyclin-depend 73.5 12 0.00042 33.1 8.4 86 97-188 152-246 (257)
37 1jkw_A Cyclin H; cell cycle, c 65.2 23 0.00077 32.6 8.5 73 112-188 186-259 (323)
38 3g33_B CCND3 protein; Ser/Thr 62.3 26 0.00087 32.0 8.3 68 116-189 195-266 (306)
39 2w96_A G1/S-specific cyclin-D1 60.2 25 0.00087 31.2 7.7 87 98-190 159-257 (271)
40 3m03_A ORC6, origin recognitio 38.9 1.2E+02 0.0041 22.6 8.7 82 100-186 6-89 (95)
41 3o0g_D Cyclin-dependent kinase 29.5 35 0.0012 27.3 2.8 67 94-160 28-102 (149)
42 3v7d_A Suppressor of kinetocho 28.4 1.2E+02 0.004 24.9 6.2 38 138-177 119-156 (169)
43 2ast_A S-phase kinase-associat 27.5 2E+02 0.0067 23.0 7.4 38 138-177 112-149 (159)
44 2qdj_A Retinoblastoma-associat 25.6 1.5E+02 0.0053 26.9 6.9 62 100-165 6-71 (304)
45 1w98_B Cyclin E, G1/S-specific 25.1 3.2E+02 0.011 24.0 9.0 46 240-285 90-142 (283)
46 3i6x_A P195, RAS GTPase-activa 22.8 1.3E+02 0.0043 25.5 5.4 77 90-184 112-191 (193)
47 1unl_D Cyclin-dependent kinase 21.8 2.2E+02 0.0076 23.7 6.4 108 94-207 73-190 (208)
48 1fs1_B SKP1, cyclin A/CDK2-ass 21.0 1.8E+02 0.006 22.9 5.7 18 138-155 107-124 (141)
49 2p1m_A SKP1-like protein 1A; F 20.9 1.2E+02 0.0042 24.4 4.9 38 138-177 111-148 (160)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-46 Score=352.39 Aligned_cols=224 Identities=21% Similarity=0.337 Sum_probs=192.4
Q ss_pred CChHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCC
Q 018657 55 ADADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLAN 134 (352)
Q Consensus 55 ~~~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~ 134 (352)
.|++|++.+|++ +|.++.|.++|+... +.++++.+|.++|+||++|+.+|+++++|+++||+|||||+++..+.+.
T Consensus 36 ~~~~~i~~~l~~--~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~- 111 (306)
T 3g33_B 36 LGDQRVLQSLLR--LEERYVPRASYFQCV-QREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA- 111 (306)
T ss_dssp -CHHHHHHHHHH--HGGGGSCSSCCTTTS-TTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG-
T ss_pred cchHHHHHHHHH--HHHHhCCCcHHHhhc-CccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH-
Confidence 378999999999 888999999999754 4689999999999999999999999999999999999999999998875
Q ss_pred CCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCC
Q 018657 135 GWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSE 214 (352)
Q Consensus 135 ~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~ 214 (352)
++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|++||+.||++|+|++++|||++||.+|+..++.....
T Consensus 112 --~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~-~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 112 --QLQLLGAVCMLLASKLRETTPLTIEKLCIY-TDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp --GHHHHHHHHHHHHHHHHCSSCCCTTHHHHH-TTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT
T ss_pred --HHHHHHHHHHHHHHHhccCCCCCHHHHHHH-hccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH
Confidence 999999999999999999999999999876 67899999999999999999999999999999999999998765322
Q ss_pred cchHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCCc---------cccCCCHHHHHHHHHHHHHHH
Q 018657 215 PGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPAI---------CHQRLNEEMVRSCHQLMEEYL 285 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~~---------~~~~~~~e~l~~C~~~i~~~~ 285 (352)
...+...+..++..++.++.|+.|+||.||||||++|+......+.| .++||++++|.+|++.|.+++
T Consensus 189 ---~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 189 ---QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAAL 265 (306)
T ss_dssp ---HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 22222333344445667899999999999999999997655443333 178999999999999999998
Q ss_pred Hhh
Q 018657 286 IDT 288 (352)
Q Consensus 286 ~~~ 288 (352)
.+.
T Consensus 266 ~~~ 268 (306)
T 3g33_B 266 RES 268 (306)
T ss_dssp HTC
T ss_pred HHH
Confidence 763
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1e-43 Score=328.20 Aligned_cols=219 Identities=16% Similarity=0.214 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCc
Q 018657 58 DDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWP 137 (352)
Q Consensus 58 ~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~ 137 (352)
+|++. |++ +|.++.|.++|+... ++++++.+|.++|+||++|+.+|++.++|+++||+|||||++.+.+++. +
T Consensus 21 ~~i~~-l~~--~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~ 93 (254)
T 2f2c_A 21 PRVLN-NLK--LRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKK---T 93 (254)
T ss_dssp HHHHH-HHH--HHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTT---T
T ss_pred HHHHH-HHH--HHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHH---H
Confidence 88999 988 788999999999643 4789999999999999999999999999999999999999999999886 9
Q ss_pred hHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcch
Q 018657 138 LQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGS 217 (352)
Q Consensus 138 lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~ 217 (352)
+||+|+|||+||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||++|+..++.+.. .
T Consensus 94 lqLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~---~ 169 (254)
T 2f2c_A 94 LQKIGAACVLIGSKIRTVKPMTVSKLTYL-SCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPED---L 169 (254)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHSTT-C---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGG---G
T ss_pred ccHHHHHHHHHHHHhcccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh---h
Confidence 99999999999999999999999999765 6788999999999999999999999999999999999999876532 2
Q ss_pred HHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCC-c--------cccCCCHHHHHHHHHHHHHHHHh
Q 018657 218 FTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPA-I--------CHQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 218 ~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~-~--------~~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
...+...+..++..++.++.|++|+||.|||||+++|.....+.+. | .++||++++|.+|++.|.+++.+
T Consensus 170 ~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~ 248 (254)
T 2f2c_A 170 WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSL 248 (254)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 2222233444555577789999999999999999999865423332 2 16899999999999999999864
No 3
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.9e-43 Score=329.52 Aligned_cols=221 Identities=25% Similarity=0.416 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCC
Q 018657 57 ADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGW 136 (352)
Q Consensus 57 ~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~ 136 (352)
++|++.+|++ +|.++.|..+|+... +.++++.+|..+++||.+++.+|+++++|+++||+|||||++...+++.
T Consensus 24 ~~~i~~~l~~--~E~~~~p~~~y~~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~--- 97 (271)
T 2w96_A 24 NDRVLRAMLK--AEETCAPSVSYFKCV-QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKS--- 97 (271)
T ss_dssp -CHHHHHHHH--HHHHTCCCTTHHHHT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTT---
T ss_pred HHHHHHHHHH--HHHHhCCCchHHHhc-CCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHH---
Confidence 5789999998 788999999998654 4789999999999999999999999999999999999999999999886
Q ss_pred chHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcc
Q 018657 137 PLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPG 216 (352)
Q Consensus 137 ~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~ 216 (352)
++||+|+||||||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||.+|+..++...
T Consensus 98 ~lqlv~~acL~iAsK~EE~~p~~~~~~~~~-~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~---- 172 (271)
T 2w96_A 98 RLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAE---- 172 (271)
T ss_dssp THHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCH----
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCc----
Confidence 999999999999999999988999999775 678899999999999999999999999999999999999987642
Q ss_pred hHHHH-HHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhcc----CCCCCcc---------ccCCCHHHHHHHHHHHH
Q 018657 217 SFTRF-LWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGES----LDSPAIC---------HQRLNEEMVRSCHQLME 282 (352)
Q Consensus 217 ~~~~~-~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~----~~~~~~~---------~~~~~~e~l~~C~~~i~ 282 (352)
..... ...+..++..++.++.|++|+||.||||||++|.... ...+.|. ++|+++++|..|++.|.
T Consensus 173 ~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~ 252 (271)
T 2w96_A 173 ENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIE 252 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 12222 2334455555567889999999999999999997433 1122232 58999999999999999
Q ss_pred HHHHhh
Q 018657 283 EYLIDT 288 (352)
Q Consensus 283 ~~~~~~ 288 (352)
+++...
T Consensus 253 ~l~~~~ 258 (271)
T 2w96_A 253 ALLESS 258 (271)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 998653
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-44 Score=332.55 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=182.9
Q ss_pred ChHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCC
Q 018657 56 DADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANG 135 (352)
Q Consensus 56 ~~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~ 135 (352)
..|+++.+|++ +|.++.|. ..++++++.+|.++|+||++|+.+|++.++|+|+||+||||||+...+++.
T Consensus 20 ~~d~i~~~l~~--~E~~~~p~------~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~-- 89 (252)
T 1f5q_B 20 CRQMIYRSERE--HDARMVGV------NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRE-- 89 (252)
T ss_dssp HHHHHHHHHHH--HHHHHSSS------SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGG--
T ss_pred hHHHHHHHHHH--HHHHhCcC------ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHH--
Confidence 46799999999 77788881 123568889999999999999999999999999999999999999998886
Q ss_pred CchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCc
Q 018657 136 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEP 215 (352)
Q Consensus 136 ~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~ 215 (352)
++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|++||+.||++|+|++++|||++||++|+..++...
T Consensus 90 -~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~-~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~--- 164 (252)
T 1f5q_B 90 -NYQSTAAVALHIAGKVRAYMPIKATQLAYL-CGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPR--- 164 (252)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH---
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCc---
Confidence 999999999999999999999999999765 688999999999999999999999999999999999999986542
Q ss_pred chHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCC----CC--ccccCCCHHHHHHHHHHHHHHHHh
Q 018657 216 GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDS----PA--ICHQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 216 ~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~----~~--~~~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
.....+...+..++..++.++.|+.|+||+|||||++++++....+ .. ..++||++++|.+|+++|.+++.+
T Consensus 165 ~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 165 EDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1222333444455555667999999999999999987776433221 00 127899999999999999999865
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.8e-43 Score=324.96 Aligned_cols=220 Identities=16% Similarity=0.207 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCC
Q 018657 57 ADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGW 136 (352)
Q Consensus 57 ~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~ 136 (352)
++|++ +|++ +|.++.|.++|+... +.++++.+|.++|+||++|+.+|++.++|+++||+|||||++...+++.
T Consensus 19 ~~~i~-~l~~--~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~--- 91 (257)
T 1g3n_C 19 DRIFY-NILE--IEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE--- 91 (257)
T ss_dssp HHHHH-HHHH--HGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---
T ss_pred HHHHH-HHHH--HHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHH---
Confidence 48888 9988 788999999998643 4689999999999999999999999999999999999999999999886
Q ss_pred chHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcc
Q 018657 137 PLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPG 216 (352)
Q Consensus 137 ~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~ 216 (352)
++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||++|+..++.....
T Consensus 92 ~lqLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~-- 168 (257)
T 1g3n_C 92 HFQKTGSACLLVASKLRSLTPISTSSLCYA-AADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH-- 168 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT--
T ss_pred HHHHHHHHHHHHHHHHccccCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH--
Confidence 999999999999999999999999999876 67889999999999999999999999999999999999998765322
Q ss_pred hHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCC-----CCcc-----ccCCCHHHHHHHHHHHHHHHH
Q 018657 217 SFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDS-----PAIC-----HQRLNEEMVRSCHQLMEEYLI 286 (352)
Q Consensus 217 ~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~-----~~~~-----~~~~~~e~l~~C~~~i~~~~~ 286 (352)
...+...+..++..++.++.|++|+||.|||||+++|....... +.|. ++|+++++|.+|++.|.+++.
T Consensus 169 -~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 169 -LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVS 247 (257)
T ss_dssp -HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22222333444445667889999999999999999996433211 2342 679999999999999999986
Q ss_pred h
Q 018657 287 D 287 (352)
Q Consensus 287 ~ 287 (352)
+
T Consensus 248 ~ 248 (257)
T 1g3n_C 248 D 248 (257)
T ss_dssp H
T ss_pred H
Confidence 5
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.1e-42 Score=318.60 Aligned_cols=220 Identities=24% Similarity=0.322 Sum_probs=191.0
Q ss_pred CCChHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCC
Q 018657 54 DADADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLA 133 (352)
Q Consensus 54 ~~~~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~ 133 (352)
.+|.+|++.+|.+ .|.++.|.++|+.+ ++++++.+|..+|+||.+|+.+|+++++|+++||+|||||++...+++.
T Consensus 4 ~eY~~di~~~l~~--~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 79 (260)
T 2cch_B 4 PDYHEDIHTYLRE--MEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG 79 (260)
T ss_dssp CTTHHHHHHHHHH--HHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred HhHHHHHHHHHHH--HHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH
Confidence 4689999999988 88899999999985 4789999999999999999999999999999999999999999999886
Q ss_pred CCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCC
Q 018657 134 NGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSS 213 (352)
Q Consensus 134 ~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~ 213 (352)
++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||.+|+..++...
T Consensus 80 ---~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~- 154 (260)
T 2cch_B 80 ---KLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN- 154 (260)
T ss_dssp ---HHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC-
T ss_pred ---HHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh-
Confidence 999999999999999999999999999876 577899999999999999999999999999999999999887642
Q ss_pred CcchHHHHHHHHHHHHHHhcchhh-hcCccHHHHHHHHHHHHHhccCCCCCcc-----ccCCCHHHHHHHHHHHHHHHHh
Q 018657 214 EPGSFTRFLWSSSDLIIRTTRVVN-FLGFAPSTIAAAAVLCAAGESLDSPAIC-----HQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 214 ~~~~~~~~~~~~~~l~l~~~~~~~-fl~~~PS~iAaAai~~a~~~~~~~~~~~-----~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
..+..+..+..++ ++.++. |++|+||.|||||+++|...... +.|. ++|+++++|.+|++.|.+++.+
T Consensus 155 --~~~~~~a~~l~e~---sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~ 228 (260)
T 2cch_B 155 --CKVESLAMFLGEL---SLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLK 228 (260)
T ss_dssp --HHHHHHHHHHHHH---HHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH---HHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 1233344433343 345777 99999999999999999754322 3332 6899999999999999998865
Q ss_pred h
Q 018657 288 T 288 (352)
Q Consensus 288 ~ 288 (352)
.
T Consensus 229 ~ 229 (260)
T 2cch_B 229 A 229 (260)
T ss_dssp G
T ss_pred c
Confidence 3
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-41 Score=317.43 Aligned_cols=221 Identities=21% Similarity=0.298 Sum_probs=187.4
Q ss_pred CCChHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhc-ccccC
Q 018657 54 DADADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSS-HFLPL 132 (352)
Q Consensus 54 ~~~~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~-~~i~~ 132 (352)
++|++|++.+|++ +|.++.|.++|+.. ++++++.+|..+++||.+++.+|++.++|+++||+|||||++. ..+++
T Consensus 15 ~~y~~~i~~~l~~--~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~ 90 (283)
T 1w98_B 15 WANREEVWKIMLN--KEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVK 90 (283)
T ss_dssp SSCHHHHHHHHHH--HTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCG
T ss_pred hcCHHHHHHHHHH--HHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCH
Confidence 5789999999999 78899999999974 5789999999999999999999999999999999999999998 56766
Q ss_pred CCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCC
Q 018657 133 ANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASS 212 (352)
Q Consensus 133 ~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~ 212 (352)
+++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||.+|+..++..+
T Consensus 91 ---~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~ 166 (283)
T 1w98_B 91 ---TLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLND 166 (283)
T ss_dssp ---GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCS
T ss_pred ---HHHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCc
Confidence 4999999999999999999999999999875 678899999999999999999999999999999999999876543
Q ss_pred CCc-----chHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCC-ccccCCCHHHHHHHHHHHHHHHH
Q 018657 213 SEP-----GSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPA-ICHQRLNEEMVRSCHQLMEEYLI 286 (352)
Q Consensus 213 ~~~-----~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~-~~~~~~~~e~l~~C~~~i~~~~~ 286 (352)
... .....+ ..+.+++..++.++.|++|+||.||||||++|.. .+. ..++||++++|.+|++.|..++.
T Consensus 167 ~~~~~~~~~~~~~~-~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~----~~~l~~~tg~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 167 LHEVLLPQYPQQIF-IQIAELLDLCVLDVDCLEFPYGILAASALYHFSS----SELMQKVSGYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp SCCSSSCCSCHHHH-HHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----HHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhHHHH-HHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----hHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 211 111222 2234444455668889999999999999999842 111 23799999999999999998865
Q ss_pred h
Q 018657 287 D 287 (352)
Q Consensus 287 ~ 287 (352)
.
T Consensus 242 ~ 242 (283)
T 1w98_B 242 V 242 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=9.2e-42 Score=317.70 Aligned_cols=217 Identities=22% Similarity=0.299 Sum_probs=187.3
Q ss_pred CChHHHHHHHHHHhhhhccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCC
Q 018657 55 ADADDVVSRLIDRESETHHMLHPDYLHRFRDCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLAN 134 (352)
Q Consensus 55 ~~~~e~l~~ll~rE~E~~~~p~~~yl~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~ 134 (352)
+|.+|++.+|.+ .|.++.|.++|+.. + +++..+|..+++||.+++.+|+++++|+++|++|||||++...+++.
T Consensus 5 eY~~di~~~l~~--~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~- 78 (269)
T 2b9r_A 5 EYVKDIYAYLRQ--LEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK- 78 (269)
T ss_dssp --CCTTTTTHHH--HHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG-
T ss_pred HHHHHHHHHHHH--HHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH-
Confidence 577889999988 78899999999974 3 89999999999999999999999999999999999999999999886
Q ss_pred CCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCC
Q 018657 135 GWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSE 214 (352)
Q Consensus 135 ~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~ 214 (352)
++||+|+|||+||+|+||..+|.+.+++.. +++.|++++|.+||+.||++|+|++++|||++||.+|+..++.+
T Consensus 79 --~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~--- 152 (269)
T 2b9r_A 79 --MLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD--- 152 (269)
T ss_dssp --GHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC---
T ss_pred --HhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC---
Confidence 999999999999999999999999999876 67789999999999999999999999999999999999877643
Q ss_pred cchHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCCc-----cccCCCHHHHHHHHHHHHHHHHhh
Q 018657 215 PGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPAI-----CHQRLNEEMVRSCHQLMEEYLIDT 288 (352)
Q Consensus 215 ~~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~~-----~~~~~~~e~l~~C~~~i~~~~~~~ 288 (352)
... ...+..++..++.++.|++|+||.||||||++|.... +.+.| .++||++++|.+|++.|.+++...
T Consensus 153 -~~~---~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l-~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~ 226 (269)
T 2b9r_A 153 -VEQ---HTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKIL-DNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMV 226 (269)
T ss_dssp -HHH---HHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHH-TCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHT
T ss_pred -HHH---HHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 222 2333445555667889999999999999999997543 32233 278999999999999999987653
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.7e-33 Score=258.84 Aligned_cols=194 Identities=17% Similarity=0.227 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhh
Q 018657 87 SVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIF 166 (352)
Q Consensus 87 ~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~ 166 (352)
+....+|..+++||.+++.+|+++++|+++|++|||||++.+.+.+. ++|++|+||||||||+||. +|.+.+++..
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF---PRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhc---CHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 45578899999999999999999999999999999999999998885 9999999999999999996 7889998742
Q ss_pred ----CCCCcc------CHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchh
Q 018657 167 ----DPRFVF------EPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVV 236 (352)
Q Consensus 167 ----~~~~~f------~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 236 (352)
..++.| ++++|++||+.||++|+|+++++||+.||.+|+..++... .....+...+..++..+..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~---~~~~~~~~~A~~l~~~s~~~~ 187 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK---NKIQKLVQMAWTFVNDSLCTT 187 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCH---HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHcCC
Confidence 223334 4899999999999999999999999999999999887642 112345555666666667778
Q ss_pred hhcCccHHHHHHHHHHHHHhccC-C---------CCCcc---ccCCCHHHHHHHHHHHHHHHHh
Q 018657 237 NFLGFAPSTIAAAAVLCAAGESL-D---------SPAIC---HQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 237 ~fl~~~PS~iAaAai~~a~~~~~-~---------~~~~~---~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
.|+.|+||.||+|||++|.+... + .+.|| .+++++++|.+|++.|.+++..
T Consensus 188 ~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 188 LSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSS
T ss_pred chhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 89999999999999999975321 1 12344 3599999999999999988643
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.8e-32 Score=253.24 Aligned_cols=188 Identities=17% Similarity=0.166 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhC-
Q 018657 89 FVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFD- 167 (352)
Q Consensus 89 ~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~- 167 (352)
...+|..+++||.+++.+|+++++|+++|++|||||++.+.+.+. ++|++|+||||||||+||. +|.+.+++...
T Consensus 27 e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 27 ELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKF---NKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhh---CHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 357899999999999999999999999999999999999998875 9999999999999999999 88899986321
Q ss_pred ------------CCCccC--HHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 018657 168 ------------PRFVFE--PKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTT 233 (352)
Q Consensus 168 ------------~~~~f~--~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~ 233 (352)
.+..|+ +++|.+||+.||++|+|+++++||+.||.+|+..++.. ..+ ...+..++..++
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~----~~~---~~~A~~~~~~sl 175 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS----KDL---AQTSYFMATNSL 175 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC----HHH---HHHHHHHHHHHH
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC----cHH---HHHHHHHHHhhh
Confidence 233455 99999999999999999999999999999999998754 223 333333333333
Q ss_pred c-hhhhcCccHHHHHHHHHHHHHhccC-CC------CCcc---ccCCCHHHHHHHHHHHHHHHHh
Q 018657 234 R-VVNFLGFAPSTIAAAAVLCAAGESL-DS------PAIC---HQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 234 ~-~~~fl~~~PS~iAaAai~~a~~~~~-~~------~~~~---~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
. ..-|+.|+||.||+|||++|..... +. +.|+ ..++++++|.+|++.|.+++..
T Consensus 176 ~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 176 HLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp HHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred hcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 2238999999999999999975321 11 2344 4479999999999999998754
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.7e-32 Score=252.31 Aligned_cols=188 Identities=18% Similarity=0.168 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhh---
Q 018657 90 VTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIF--- 166 (352)
Q Consensus 90 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~--- 166 (352)
..+|..+++||.+++..|+|+++|+++|++|||||++.+.+.+. ++|++|+||||||||+||..+|.+.+++..
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI---DPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc---CHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999885 999999999999999999977777787532
Q ss_pred ----------CCCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchh
Q 018657 167 ----------DPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVV 236 (352)
Q Consensus 167 ----------~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 236 (352)
...+.+++++|++||+.||++|+|+++++||+.||.+|+..++.. ..+...+..++..++.+.
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-------~~~~~~A~~~l~~sl~t~ 189 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-------DMLLPLAWRIVNDTYRTD 189 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHTTSS
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHccC
Confidence 234568999999999999999999999999999999999998753 234445555665566677
Q ss_pred hhcCccHHHHHHHHHHHHHhccCC-CCCcc-ccCCCHHHHHHHHHHHHHHHHh
Q 018657 237 NFLGFAPSTIAAAAVLCAAGESLD-SPAIC-HQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 237 ~fl~~~PS~iAaAai~~a~~~~~~-~~~~~-~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
.|+.|+||.||+|||++|...... .+.|+ ..+++.++|.+|++.|.+++..
T Consensus 190 ~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~~~~~~~~l~~~~~~il~ly~~ 242 (285)
T 3rgf_B 190 LCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ 242 (285)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHTSCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHcCCChhhHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999753321 23344 6799999999999999998754
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.98 E-value=9e-32 Score=245.47 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccC-CCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhC----
Q 018657 93 RQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPL-ANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFD---- 167 (352)
Q Consensus 93 R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~-~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~---- 167 (352)
|..+++||.+++..++++++|+++|++|||||++.+.+.+ . ++|++|+||||||||+||. ++.+.|++...
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~---~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGF---SLEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCC---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc---CHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999887 5 9999999999999999997 77888987542
Q ss_pred -CCCccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchhhhcCccHHHH
Q 018657 168 -PRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTI 246 (352)
Q Consensus 168 -~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~i 246 (352)
..+.+++++|.+||+.||++|+|++.++||+.||.+|+..++.. . .+...+..++..+..+..++.|+||.|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~---~~~~~A~~~l~~s~~~~~~l~~~Ps~I 176 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----Q---KQLEFAWSIVNDSYASSLCLMAHPHQL 176 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----H---HHHHHHHHHHHHHTTTTGGGTSCHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----H---HHHHHHHHHHHHHHcCCchhccCHHHH
Confidence 12468999999999999999999999999999999999976543 1 344555566666667788999999999
Q ss_pred HHHHHHHHHhccCCC--CC--ccccCCCHHHHHHHHHHHHHHHHh
Q 018657 247 AAAAVLCAAGESLDS--PA--ICHQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 247 AaAai~~a~~~~~~~--~~--~~~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
|||||++|.... +. +. .++.++++++|.+|++.|.+++..
T Consensus 177 AaAai~lA~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 177 AYAALLISCCND-ENTIPKLLDLIKSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp HHHHHHHHHTSC-TTHHHHHHHHCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc-CCCCCCCcchhhcCCHHHHHHHHHHHHHHHhh
Confidence 999999997543 32 11 123499999999999999998754
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=1.6e-31 Score=257.56 Aligned_cols=188 Identities=16% Similarity=0.145 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhC-
Q 018657 89 FVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFD- 167 (352)
Q Consensus 89 ~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~- 167 (352)
...+|..+++||.+|+.+|+|+++|+++|++|||||++.+.+.+. ++|++|+||||||+|+||. ++.+.+++.+.
T Consensus 34 E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~---~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~ 109 (358)
T 2pk2_A 34 ELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRF---PGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---cHHHHHHHHHHHHHhhccC-CCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999998875 9999999999999999999 78888886321
Q ss_pred ------------CCCccC--HHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhc
Q 018657 168 ------------PRFVFE--PKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTT 233 (352)
Q Consensus 168 ------------~~~~f~--~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~ 233 (352)
.+..|+ +++|++||+.||++|+|+|+++||+.||.+|+..++.. . .+...+..++..++
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~---~l~~~A~~ll~~sl 182 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----K---DLAQTSYFMATNSL 182 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----H---HHHHHHHHHHHHHT
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----H---HHHHHHHHHHHHHH
Confidence 123343 89999999999999999999999999999999998753 2 23333444443444
Q ss_pred chh-hhcCccHHHHHHHHHHHHHhccC-CC------CCcc---ccCCCHHHHHHHHHHHHHHHHh
Q 018657 234 RVV-NFLGFAPSTIAAAAVLCAAGESL-DS------PAIC---HQRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 234 ~~~-~fl~~~PS~iAaAai~~a~~~~~-~~------~~~~---~~~~~~e~l~~C~~~i~~~~~~ 287 (352)
... -|+.|+||.||||||++|....- .. ..|+ ..++++++|.+|++.|.+++..
T Consensus 183 ~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 183 HLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEK 247 (358)
T ss_dssp TTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTT
T ss_pred hcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 333 37999999999999999975431 11 2344 3478999999999999988643
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=7.1e-29 Score=236.26 Aligned_cols=194 Identities=16% Similarity=0.156 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhC
Q 018657 90 VTARQDSINWILNVHANYK--FRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFD 167 (352)
Q Consensus 90 ~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~ 167 (352)
...|...++||.+++..|+ |+++|+++|++|||||++.+++.+. ++|++|+||||||||+||. ++.+.+++...
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY---HPRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc---CHHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 3457888999999999999 9999999999999999999998875 9999999999999999999 67888887543
Q ss_pred CCC----ccCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchhhhcCccH
Q 018657 168 PRF----VFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAP 243 (352)
Q Consensus 168 ~~~----~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~fl~~~P 243 (352)
... .+++++|++||+.||++|+|+++++||+.||..|+..+...-........+...+..++..+..+..++.|+|
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~P 209 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTP 209 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCH
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCH
Confidence 222 4678999999999999999999999999999999876521000000112344555566666666677899999
Q ss_pred HHHHHHHHHHHHhcc-CCCCCcc-----c--cCCCHHHHHHHHHHHHHHHHh
Q 018657 244 STIAAAAVLCAAGES-LDSPAIC-----H--QRLNEEMVRSCHQLMEEYLID 287 (352)
Q Consensus 244 S~iAaAai~~a~~~~-~~~~~~~-----~--~~~~~e~l~~C~~~i~~~~~~ 287 (352)
|.||||||++|.... .+.+.|. . .+++.++|.+|++.|..++..
T Consensus 210 s~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 210 SQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 261 (323)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHc
Confidence 999999999997543 2334443 1 467899999999999998765
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=1.2e-24 Score=194.48 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCc
Q 018657 92 ARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFV 171 (352)
Q Consensus 92 ~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~ 171 (352)
....+.+||.+++..+++++.|..+|++||+||+....+.+. ..+++++||||||||+||. ++.+.|+... .+
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~-p~~l~di~~~-~~-- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGV-PRTFKEICAV-SR-- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHT-SS--
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCC-CCCHHHHHHH-HC--
Confidence 466789999999999999999999999999999999888776 8999999999999999998 7899998765 23
Q ss_pred cCHHHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchhhhcCccHHHHHHHHH
Q 018657 172 FEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAAAV 251 (352)
Q Consensus 172 f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaAai 251 (352)
++.++|.++|+.||+.|+|++.+++|+.||.+|.+.++.+ ........++.+..+ .+.-+++|+|+.||||||
T Consensus 77 ~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~----~~~~~~A~~i~~~~~---~~~l~~g~~P~~IAaAai 149 (207)
T 1c9b_A 77 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP----KQVQMAATHIARKAV---ELDLVPGRSPISVAAAAI 149 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC----HHHHHHHHHHHHHHH---HTTCSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHH---HcCccCCCChHHHHHHHH
Confidence 7999999999999999999999999999999999999875 223334444334333 234478999999999999
Q ss_pred HHHHhccCCCCCc-----cccCCCHHHHHHHHHHHHHHHHhhC
Q 018657 252 LCAAGESLDSPAI-----CHQRLNEEMVRSCHQLMEEYLIDTC 289 (352)
Q Consensus 252 ~~a~~~~~~~~~~-----~~~~~~~e~l~~C~~~i~~~~~~~~ 289 (352)
++|.+. .+.+.+ ...++++..|..|++.|.+.+....
T Consensus 150 ylA~~~-~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~ 191 (207)
T 1c9b_A 150 YMASQA-SAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLF 191 (207)
T ss_dssp HHHHHT-SSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHS
T ss_pred HHHHHH-HCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhC
Confidence 999754 344433 2789999999999999998765544
No 16
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7e-24 Score=203.55 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=113.4
Q ss_pred CCCCCCCCcceeccCCcccc---cCCCCCCccCCCCCcccccCCCCCcCCCCCCChHHHHHHHHHHhhhhccCCCccccc
Q 018657 5 SLDNSHSSSLYCGEEDAAAA---ADGGSDMVSCDTTDTWIFHNQSPAFDVVDDADADDVVSRLIDRESETHHMLHPDYLH 81 (352)
Q Consensus 5 ~~d~~~~~~l~C~e~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~rE~E~~~~p~~~yl~ 81 (352)
.+|++ .|.++|++||.+++ +|.+.||++|+.++.. ..++++++.+.++...+..+.+.+......... ...-+.
T Consensus 35 v~D~~-~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~-~~~~srvG~~~~~~~~~~~l~T~I~~~~~~~~~-~~r~l~ 111 (345)
T 3k7a_M 35 VERFS-EGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHN-GDDPSRVGEASNPLLDGNNLSTRIGKGETTDMR-FTKELN 111 (345)
T ss_dssp CCCSS-SCSCCCSSSCCCCCCCCCCTTCCCCCC---------------CCCCCSSSCCCCCCCCCCTTSCCHH-HHHHHH
T ss_pred EEECC-CCCEecCCCCeEcccccccCCcccccccccccc-CCCCCccCCCCCccccCCCCceeeccCCCCCch-hhhhhh
Confidence 36776 78999999999998 5677899999864421 134555555444332221111111100000000 000000
Q ss_pred ccc---CCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCC
Q 018657 82 RFR---DCSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVP 158 (352)
Q Consensus 82 ~~~---~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p 158 (352)
+.+ ..+-.......+...|..++..++|+..+...|..||.|++....+.+. ..+.+++||||||||.++. ++
T Consensus 112 ~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr---~~~~vaaAclyiAcR~e~~-pr 187 (345)
T 3k7a_M 112 KAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-AR 187 (345)
T ss_dssp HHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC---CSHHHHTTTTTTTSBTTBS-SC
T ss_pred hhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC---cHHHHHHHHHHHHHHHcCC-Cc
Confidence 100 0011122345788999999999999999999999999999999888776 8999999999999999998 78
Q ss_pred cchhhhhhCCCCccCHHHHHHHHHHHHHHcC------------cccccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHH
Q 018657 159 LLLDLQIFDPRFVFEPKTVQRMELRVMSVLN------------WRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSS 226 (352)
Q Consensus 159 ~~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~------------w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~ 226 (352)
++.|+... . .++.++|.++++.|++.|+ +.+.+++|..||.+|++.|+.... +...+.
T Consensus 188 tl~ei~~~-~--~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-------v~~~A~ 257 (345)
T 3k7a_M 188 TFKEIQSL-I--HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-------VTTSAE 257 (345)
T ss_dssp CHHHHHHS-S--SCCSHHHHHHHHHHHHHHTCC-----------------------------------------------
T ss_pred cHHHHHHH-H--CCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-------HHHHHH
Confidence 99998765 2 3789999999999999999 999999999999999999987522 233333
Q ss_pred HHHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCC----c-cccCCCHHHHHHHHHHHHHHHHhh
Q 018657 227 DLIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPA----I-CHQRLNEEMVRSCHQLMEEYLIDT 288 (352)
Q Consensus 227 ~l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~----~-~~~~~~~e~l~~C~~~i~~~~~~~ 288 (352)
+++.....+.-+.+++|+.|||||||+|... .+.+. + ...++++..|+.+++.|.++....
T Consensus 258 ~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~-~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~~l 323 (345)
T 3k7a_M 258 YTAKKCKEIKEIAGKSPITIAVVSIYLNILL-FQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKL 323 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHhchhcCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 4443333334467899999999999999743 33221 2 378999999999999998876443
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.87 E-value=8e-21 Score=168.65 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCc
Q 018657 92 ARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFV 171 (352)
Q Consensus 92 ~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~ 171 (352)
....+.++|.+++..+++++.+...|..|++||+....+.+. ..+.+++||||+|||+++. ++.+.|+.... .
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~~-p~~l~di~~~~---~ 80 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLKV-PRTLDEIADIA---R 80 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHTC-CCCHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcCC-CCCHHHHHHHH---C
Confidence 356789999999999999999999999999999999888765 8999999999999999996 78999987652 3
Q ss_pred cCHHHHHHHHHHHHHHcCccccc--CChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchhhhcCccHHHHHHH
Q 018657 172 FEPKTVQRMELRVMSVLNWRLNS--ITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNFLGFAPSTIAAA 249 (352)
Q Consensus 172 f~~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~fl~~~PS~iAaA 249 (352)
++.++|.++++.|++.|+|++.+ ++|+.||.+|...++... .+...+.+++-....+.-+.+++|+.||||
T Consensus 81 v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-------~v~~~A~~i~~~~~~~~~~~gr~P~~iAaA 153 (200)
T 1ais_B 81 VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-------KVRRRAIEILDEAYKRGLTSGKSPAGLVAA 153 (200)
T ss_dssp SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-------HHHHHHHHHHHHHHHTTCCTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHcCcccCCCHHHHHHH
Confidence 78999999999999999999999 999999999999998752 233344444444434445789999999999
Q ss_pred HHHHHHhccCCCCCc-----cccCCCHHHHHHHHHHHHHHHH
Q 018657 250 AVLCAAGESLDSPAI-----CHQRLNEEMVRSCHQLMEEYLI 286 (352)
Q Consensus 250 ai~~a~~~~~~~~~~-----~~~~~~~e~l~~C~~~i~~~~~ 286 (352)
|||+|.+. .+.+.+ ...++++..|..|++.|.+.+.
T Consensus 154 aly~A~~~-~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 154 ALYIASLL-EGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHH-TTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 99999753 444433 2789999999999999998763
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.76 E-value=6.2e-20 Score=175.75 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=117.7
Q ss_pred CCCCCCCcceeccCCcccc---cCCCCCCccCCCCCcccccCCCCCcCCCCCCChHHHHHHHHHHhhhhccCCCcccccc
Q 018657 6 LDNSHSSSLYCGEEDAAAA---ADGGSDMVSCDTTDTWIFHNQSPAFDVVDDADADDVVSRLIDRESETHHMLHPDYLHR 82 (352)
Q Consensus 6 ~d~~~~~~l~C~e~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~rE~E~~~~p~~~yl~~ 82 (352)
+|++ .|.++|++||.++. +|.+.||++|++++. ...+++++|.+.++...+..|.+.+......... ...-|.+
T Consensus 36 ~D~~-~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~-~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~~~~-~~~~L~r 112 (345)
T 4bbr_M 36 ERFS-EGDVVCALCGLVLSDKLVDTRSEWRTFSNDDH-NGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMR-FTKELNK 112 (345)
T ss_dssp EEGG-GTEEEETTTCBEEESCCBCHHHHHTTTSCSCS-SSCCSSCCEEEECHHHHCSCCCCEEECCSSCCHH-HHHHHHH
T ss_pred EECC-CCcEEeCCCCCCccCcccccCccccCCCcccc-cCCCcCCCCCCCCccccCCCcceeecCCCCcchh-hHHHHHH
Confidence 4776 68999999999998 567789999986653 1246777776543322221122222100000000 0000000
Q ss_pred ccC---CCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCc
Q 018657 83 FRD---CSVFVTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPL 159 (352)
Q Consensus 83 ~~~---~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~ 159 (352)
.+. .+-....-..+...|.+++..++|+..+.-.|..||.+++....+.+. ....+++||||+|||.++. +.+
T Consensus 113 ~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGr---s~e~vaAAclYiACR~~~~-prt 188 (345)
T 4bbr_M 113 AQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ART 188 (345)
T ss_dssp HHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTC---CHHHHHHHHHHHHHHHTCC-BCC
T ss_pred HHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCC---CHHHHHHHHHHHHHHhcCC-Ccc
Confidence 000 000111124578899999999999999999999999999998877775 8999999999999999987 788
Q ss_pred chhhhhhCCCCccCHHHHHHHHHHHHHHcCcc------------cccCChHHHHHHHHHhCCCCCCCcchHHHHHHHHHH
Q 018657 160 LLDLQIFDPRFVFEPKTVQRMELRVMSVLNWR------------LNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSD 227 (352)
Q Consensus 160 ~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~w~------------l~~~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~ 227 (352)
+.|+.... ..+.++|.+..+.|++.|+.. +..++|..||.+|.+.|+.... +...+.+
T Consensus 189 l~eI~~~~---~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-------v~~~A~~ 258 (345)
T 4bbr_M 189 FKEIQSLI---HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-------VTTSAEY 258 (345)
T ss_dssp HHHHHHHH---TCCTTHHHHHHHHHHHCC---------------------------------------------------
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-------HHHHHHH
Confidence 88886542 367899999999999999974 7788999999999999987632 2222333
Q ss_pred HHHHhcchhhhcCccHHHHHHHHHHHHHhccCCCCC-----ccccCCCHHHHHHHHHHHHHHHHhhC
Q 018657 228 LIIRTTRVVNFLGFAPSTIAAAAVLCAAGESLDSPA-----ICHQRLNEEMVRSCHQLMEEYLIDTC 289 (352)
Q Consensus 228 l~l~~~~~~~fl~~~PS~iAaAai~~a~~~~~~~~~-----~~~~~~~~e~l~~C~~~i~~~~~~~~ 289 (352)
++.....+--..+.+|+.|||||||+|.+. .+.+. ....++++.-|+..|+.|.+......
T Consensus 259 i~~~~~~~~i~~GR~P~~IAAAaIylAa~l-~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 259 TAKKCKEIKEIAGKSPITIAVVSIYLNILL-FQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHhcccccCCChHHHHHHHHHHHHHH-hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 333222222235899999999999999743 33221 23678888899998888887754433
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.48 E-value=1e-06 Score=81.22 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhhhhccc-ccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCH
Q 018657 96 SINWILNVHANYKFRPVTALLSVNYFDRFLSSHF-LPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEP 174 (352)
Q Consensus 96 ~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~-i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~ 174 (352)
+-+|+.++..+-++++.++..|+.|+||+..... +.. .++...-+-++||.+|+|+-+.....-..+..+ ..++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV---gGisl 152 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV---GGVRC 152 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH---HTSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccccccChhHhhhc---cCcCH
Confidence 5679999999999999999999999999987543 322 346889999999999999988767777777665 24799
Q ss_pred HHHHHHHHHHHHHcCcccccCChHHHHHHHHHhCCC
Q 018657 175 KTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPA 210 (352)
Q Consensus 175 ~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~ 210 (352)
+++.+||+..|..|+|++.+. +..|..+++...+.
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~~ 187 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQK 187 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhhc
Confidence 999999999999999999655 55677666655433
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.94 E-value=0.0033 Score=54.65 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHH
Q 018657 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKT 176 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~ 176 (352)
-++|.+++..++++.++...|..++.+........+ .....+++||+++|+++... +....++... . ..+..+
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~g---r~P~~iAaAaly~A~~~~~~-~~t~~ei~~~-~--~vs~~t 181 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSG---KSPAGLVAAALYIASLLEGE-KRTQREVAEV-A--RVTEVT 181 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTT---SCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-H--TCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccC---CCHHHHHHHHHHHHHHHhCC-CCCHHHHHHH-h--CCCHHH
Confidence 467788889999999999999999999987655554 48999999999999999875 4566777554 2 268899
Q ss_pred HHHHHHHHHHHcCcccc
Q 018657 177 VQRMELRVMSVLNWRLN 193 (352)
Q Consensus 177 I~~mE~~IL~~L~w~l~ 193 (352)
|.+.-..+.+.|+-.+.
T Consensus 182 i~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 182 VRNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.25 E-value=0.053 Score=47.13 Aligned_cols=86 Identities=6% Similarity=0.010 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHH
Q 018657 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKT 176 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~ 176 (352)
.++|.+.+..++++.++..+|..++.+-+...-..+ .....+|+||+++|+++.+. .....++... ..++..+
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g---~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~---~~v~~~t 175 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPG---RSPISVAAAAIYMASQASAE-KRTQKEIGDI---AGVADVT 175 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTT---CCHHHHHHHHHHHHHHTSSS-CCCHHHHHHH---HTCCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCC---CChHHHHHHHHHHHHHHHCC-CCCHHHHHHH---hCCCHHH
Confidence 567788889999999999999999988776544434 48899999999999999875 3445565433 2368899
Q ss_pred HHHHHHHHHHHcC
Q 018657 177 VQRMELRVMSVLN 189 (352)
Q Consensus 177 I~~mE~~IL~~L~ 189 (352)
|.+.-..+++.++
T Consensus 176 I~~~~~~l~~~l~ 188 (207)
T 1c9b_A 176 IRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877665
No 22
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=94.60 E-value=2 Score=37.07 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCH
Q 018657 95 DSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEP 174 (352)
Q Consensus 95 ~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~ 174 (352)
.+.+-|+.++.+-+++..++--||.+--.|.-.+.-.+..-.+.|-+|+||+.||+--... |..+.++..++. ....
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~-PiplaE~r~lD~--sL~D 90 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQ-PLPLAEVRCLDS--SLGD 90 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHCT--TCCC
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCC-CccHHHHHHHhh--hhhH
Confidence 3566779999999999999999999999998765533333347899999999999975555 556677766643 2333
Q ss_pred HHHHHHHHHHHHHcCc-----ccccCChHHHHHHHHHhCCCC
Q 018657 175 KTVQRMELRVMSVLNW-----RLNSITPFDYLHYFISKLPAS 211 (352)
Q Consensus 175 ~~I~~mE~~IL~~L~w-----~l~~~Tp~~Fl~~fl~~l~~~ 211 (352)
-+..+ ..|++.|+- +|.-.-.-..|.+|+.+++..
T Consensus 91 velrr--~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq 130 (260)
T 3h4c_A 91 VELRR--ADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQ 130 (260)
T ss_dssp HHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHH--HHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccc
Confidence 33444 346677764 444444555677788888775
No 23
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.45 E-value=0.024 Score=39.24 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCCCCCcceeccCCcccc---cCCCCCCccCCCC
Q 018657 6 LDNSHSSSLYCGEEDAAAA---ADGGSDMVSCDTT 37 (352)
Q Consensus 6 ~d~~~~~~l~C~e~~~~~~---~~~~~e~~~~~~~ 37 (352)
+|+. .+.++|.+||.++. +|.+.||++|+.+
T Consensus 24 ~D~~-~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 24 EDYR-AGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp ECSS-SCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred EeCC-CCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 5766 68999999999997 6778899998853
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.025 Score=47.73 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=34.9
Q ss_pred CCCCCCCcceeccCCcccc---cCCCCCCccCCCCCcccccCCCCCcCCCCC
Q 018657 6 LDNSHSSSLYCGEEDAAAA---ADGGSDMVSCDTTDTWIFHNQSPAFDVVDD 54 (352)
Q Consensus 6 ~d~~~~~~l~C~e~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 54 (352)
.|+. .+.++|++||.++. +|.+.||++|+.++. ...++++++.+.+.
T Consensus 36 ~D~e-rGE~VCsdCGLVLEEriID~GPEWRAFsnDD~-~~dDpSRVGAPs~~ 85 (197)
T 3k1f_M 36 ERFS-EGDVVCALCGLVLSDKLVDTRSEWRTFSNXXX-XXXXXXXXXXXXXX 85 (197)
T ss_dssp EEGG-GTEEEETTTCBBCCCCCBCHHHHHHHHHCCCT-TTTCSCCCBCCBCC
T ss_pred EeCC-CCEEEEcCCCCCcCCceeECCCCCcCcCCccc-cccccccccccccc
Confidence 4555 58999999999997 566789999986543 23577888876544
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=89.72 E-value=0.6 Score=41.21 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 98 NWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
++|.+....++++.++..+|..++..-+.....-. .....+|+||+++|+++.....|. +-... . .++.++|
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~---~~Ps~IAaAai~lA~~~~~~~~~~--~~~~~--~-~~~~~~i 207 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLM---AHPHQLAYAALLISCCNDENTIPK--LLDLI--K-STDAFKV 207 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGT---SCHHHHHHHHHHHHHTSCTTHHHH--HHHHC--C-HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhc---cCHHHHHHHHHHHHHHhcCCCCCC--Ccchh--h-cCCHHHH
Confidence 45566666788899999999999988765544444 378899999999999986543221 11111 1 5788888
Q ss_pred HHHHHHHHHHc
Q 018657 178 QRMELRVMSVL 188 (352)
Q Consensus 178 ~~mE~~IL~~L 188 (352)
...-..|++..
T Consensus 208 ~~~~~~i~~ly 218 (235)
T 1zp2_A 208 ILCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888754
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.44 E-value=1.7 Score=38.67 Aligned_cols=88 Identities=10% Similarity=0.200 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCh----hHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchh------h-hh
Q 018657 97 INWILNVHANYKFRP----VTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLD------L-QI 165 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~----~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~d------l-~~ 165 (352)
.+++......++.+. ++..+|..+++.-+.....-. .....+|+||+++|+++.+...|.... . ..
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~---~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~ 228 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ---WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ 228 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT---SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc---cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHH
Confidence 356777777777776 577788888877765544434 378899999999999987654332110 1 11
Q ss_pred hCCCCccCHHHHHHHHHHHHHHcC
Q 018657 166 FDPRFVFEPKTVQRMELRVMSVLN 189 (352)
Q Consensus 166 ~~~~~~f~~~~I~~mE~~IL~~L~ 189 (352)
.. ..++.++|...-..|++...
T Consensus 229 ~~--~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 229 FV--QDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp TS--SSCCHHHHHHHHHHHHTTTS
T ss_pred hc--cCCCHHHHHHHHHHHHHHHh
Confidence 11 14789999999888887653
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.98 E-value=1.9 Score=38.38 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhh-cccccCCCCCchHHHHHHHHHHHhhhhccCCCcchh---hh-hhCCCCc
Q 018657 97 INWILNVHANYKFRPVTALLSVNYFDRFLS-SHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLD---LQ-IFDPRFV 171 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls-~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~d---l~-~~~~~~~ 171 (352)
.+++......++.+.++..+|..++..-+. ....-. .....+|+||+++|+++.+...|...+ .- .. ...
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~---~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~ 221 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQ---YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPT 221 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGT---SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHc---CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCC
Confidence 346666677788888888888888755442 221222 378899999999999997654443211 11 11 223
Q ss_pred cCHHHHHHHHHHHHHHc
Q 018657 172 FEPKTVQRMELRVMSVL 188 (352)
Q Consensus 172 f~~~~I~~mE~~IL~~L 188 (352)
++.++|...-..|+..+
T Consensus 222 ~~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 222 VTLELLDELTHEFLQIL 238 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 68999999988888765
No 28
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=88.60 E-value=0.24 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCCCCCCcceeccCCcccc---cCCCCCCccCC
Q 018657 6 LDNSHSSSLYCGEEDAAAA---ADGGSDMVSCD 35 (352)
Q Consensus 6 ~d~~~~~~l~C~e~~~~~~---~~~~~e~~~~~ 35 (352)
+|.. .+.|+|.+|+.++. +|.+.||++|+
T Consensus 18 ~d~~-~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 18 YDPE-RGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp EETT-TTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EcCC-CCeEECcccCCcccccccccCCcccccC
Confidence 5654 57899999999877 55667888775
No 29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.67 E-value=1.5 Score=39.91 Aligned_cols=103 Identities=12% Similarity=0.238 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 98 NWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
++|.+....++.+..+..+|.+++..-+.....-. .....+|+||+++|+++.....+ ..- ....++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~---~~Ps~IAaAaiylA~~~~~~~~~---~W~---~~~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLL---YPPFMIALACLHVACVVQQKDAR---QWF---AELSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHH---SCHHHHHHHHHHHHHHHTTCCCH---HHH---HTSCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhc---cCHHHHHHHHHHHHHHHcCCChh---hHH---HHHCCCHHHH
Confidence 45666667777888888999988887665443333 37889999999999998765322 111 1234788999
Q ss_pred HHHHHHHHHHc-CcccccCChHHHHHHHHHhCCCC
Q 018657 178 QRMELRVMSVL-NWRLNSITPFDYLHYFISKLPAS 211 (352)
Q Consensus 178 ~~mE~~IL~~L-~w~l~~~Tp~~Fl~~fl~~l~~~ 211 (352)
...-..|+... .|+.. +.-.=+..++.++...
T Consensus 230 ~~~~~~il~ly~~~~~~--~~~~~~~~~~~k~~~~ 262 (285)
T 3rgf_B 230 LEIIRVILKLYEQWKNF--DERKEMATILSKMPKP 262 (285)
T ss_dssp HHHHHHHHHHHHHHHHC--CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhcccC--chhhhHHHHHHhCCCC
Confidence 98888888775 34321 1223344455555443
No 30
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.20 E-value=1.5 Score=41.38 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhccc-ccCCCCCchHHHHHHHHHHHhhhhccCCCcch---hhhhhCCCCccC
Q 018657 98 NWILNVHANYKFRPVTALLSVNYFDRFLSSHF-LPLANGWPLQLLSVACLSLAAKMEETQVPLLL---DLQIFDPRFVFE 173 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~-i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~---dl~~~~~~~~f~ 173 (352)
+||..+...++.+.++..+|.+++..-+.... .-. .....||+|||++|+++.....|... ..-.. -...++
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~---y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~-~~~~vt 230 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ---YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEY-VDATVT 230 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGT---SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTT-SCSSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhc---cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHH-HhccCC
Confidence 45666667778888888889888865542222 222 37889999999999999765444321 11000 112368
Q ss_pred HHHHHHHHHHHHHHc
Q 018657 174 PKTVQRMELRVMSVL 188 (352)
Q Consensus 174 ~~~I~~mE~~IL~~L 188 (352)
.++|...-..|+..+
T Consensus 231 ~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 231 LELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 889998888888765
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=82.52 E-value=0.25 Score=46.52 Aligned_cols=84 Identities=5% Similarity=-0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 98 NWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
++|.+.+..++++.++..+|..++.+.+...-..+ ....-+|+||++||+++.+.. ....++... ...+..+|
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~G---r~P~~IAaAaIylAa~~~~~~-~t~~eIa~~---~~Vse~TI 309 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAG---KSPITIAVVSIYLNILLFQIP-ITAAKVGQT---LQVTEGTI 309 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcC---CCHHHHHHHHHHHHHHHHCCC-CCHHHHHHH---HCCCHHHH
Confidence 45556666677777777777777776654433333 377889999999999987653 233444322 22455666
Q ss_pred HHHHHHHHHHc
Q 018657 178 QRMELRVMSVL 188 (352)
Q Consensus 178 ~~mE~~IL~~L 188 (352)
..--..++..+
T Consensus 310 r~~ykel~~~~ 320 (345)
T 3k7a_M 310 KSGYKILYEHR 320 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 66555555554
No 32
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=80.07 E-value=6.2 Score=36.96 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHhcchhhh-cCccHHHHHHHHHHHHHhccCCCCCc-----cccC
Q 018657 195 ITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRVVNF-LGFAPSTIAAAAVLCAAGESLDSPAI-----CHQR 268 (352)
Q Consensus 195 ~Tp~~Fl~~fl~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~f-l~~~PS~iAaAai~~a~~~~~~~~~~-----~~~~ 268 (352)
...+..|..+...|+... .+...+..+.-.. .+..+ -+.+...|||||+|+|.+.. +.|.. ..++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~-------~v~d~A~~lyk~a-~~~~~~rGrs~e~vaAAclYiACR~~-~~prtl~eI~~~~~ 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK-------IVKDCAKEAYKLC-HDEKTLKGKSMESIMAASILIGCRRA-EVARTFKEIQSLIH 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHH-TTCTTTTTCCHHHHHHHHHHHHHHHT-CCBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHH-HhcCCccCCCHHHHHHHHHHHHHHhc-CCCccHHHHHHHhC
Confidence 346677788888888762 2333333333322 33444 46889999999999997543 33332 2678
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 018657 269 LNEEMVRSCHQLMEEYLI 286 (352)
Q Consensus 269 ~~~e~l~~C~~~i~~~~~ 286 (352)
+++.+|..++..|.+.+.
T Consensus 198 v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp CCTTHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999999999999987653
No 33
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=77.70 E-value=4.4 Score=36.36 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHH
Q 018657 97 INWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKT 176 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~ 176 (352)
.+|+.......+++..+..+|-.+++.-+....+-. ...-.+|+||+++|.+.-+.. +...++... ++ ++..+
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~---~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~-tg--~~~~~ 211 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVH---FPPSQIAAGAFSLALKILDNG-EWTPTLQHY-LS--YTEES 211 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSS---SCTTHHHHHHHHHHHHHHTCC-CSCTTHHHH-SC--CCSST
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhc---CCHHHHHHHHHHHHHHHhCCC-CCCHHHHHH-HC--CCHHH
Confidence 356777777778888888888888887765555444 377889999999999987652 333344332 22 35455
Q ss_pred HHHHHHHHH
Q 018657 177 VQRMELRVM 185 (352)
Q Consensus 177 I~~mE~~IL 185 (352)
|...=..|+
T Consensus 212 l~~~~~~l~ 220 (269)
T 2b9r_A 212 LLPVMQHLA 220 (269)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 34
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=76.38 E-value=9.5 Score=33.87 Aligned_cols=85 Identities=7% Similarity=-0.066 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCCh-hHHHHHHHHHHhhhhccc-ccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCH
Q 018657 97 INWILNVHANYKFRP-VTALLSVNYFDRFLSSHF-LPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEP 174 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~-~T~~lAv~~lDRfls~~~-i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~ 174 (352)
.+|+......++++. .+..+|-.+++.-+.... +-+ .....+|+||+++|.+.-+. .+....+... + .++.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~---~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~--g~~~ 212 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLK---YLPSVIAGAAFHLALYTVTG-QSWPESLIRK-T--GYTL 212 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTT---SCHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-H--CCCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhC---CCHHHHHHHHHHHHHHHhCC-CcchHHHHHH-h--CcCH
Confidence 567777777777765 667777777776543333 333 37789999999999998664 3333444332 2 3688
Q ss_pred HHHHHHHHHHHHHc
Q 018657 175 KTVQRMELRVMSVL 188 (352)
Q Consensus 175 ~~I~~mE~~IL~~L 188 (352)
++|...=..|++.+
T Consensus 213 ~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 213 ESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777654
No 35
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=74.50 E-value=12 Score=33.01 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCChhHH----HHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCc----chhhhhhCCC
Q 018657 98 NWILNVHANYKFRPVTA----LLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPL----LLDLQIFDPR 169 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~----~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~----~~dl~~~~~~ 169 (352)
+|+......++.+.++. .+|..+++.-+....+-. .....+|+||+++|.+.....+.. ...+... +
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~---~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-t- 228 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIAL---LSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-L- 228 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTT---SCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-H-
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhc---cCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-H-
Confidence 34555555666665542 345566664444333333 378899999999999985222111 3344433 2
Q ss_pred CccCHHHHHHHHHHHHHHc
Q 018657 170 FVFEPKTVQRMELRVMSVL 188 (352)
Q Consensus 170 ~~f~~~~I~~mE~~IL~~L 188 (352)
.++.++|...-..|.+.+
T Consensus 229 -g~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 229 -NFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp -TCCHHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHHHHHH
Confidence 368899988877777665
No 36
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=73.50 E-value=12 Score=33.08 Aligned_cols=86 Identities=8% Similarity=-0.019 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCChhH----HHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCC-----CcchhhhhhC
Q 018657 97 INWILNVHANYKFRPVT----ALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQV-----PLLLDLQIFD 167 (352)
Q Consensus 97 v~Wi~~v~~~~~l~~~T----~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~-----p~~~dl~~~~ 167 (352)
.+|+......++++.++ ..+|..+++.-+....+-. ...-.+|+||+++|.+..+..+ +....+...
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~---~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~- 227 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGS---LPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI- 227 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGG---SCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhC---cCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-
Confidence 34555555666665554 2345556654443333333 3778899999999999876421 122333332
Q ss_pred CCCccCHHHHHHHHHHHHHHc
Q 018657 168 PRFVFEPKTVQRMELRVMSVL 188 (352)
Q Consensus 168 ~~~~f~~~~I~~mE~~IL~~L 188 (352)
+ .++.++|...=..|.+.+
T Consensus 228 t--~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 228 L--GCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp H--TCCHHHHHHHHHHHHHHH
T ss_pred H--CcCHHHHHHHHHHHHHHH
Confidence 2 368888888777776654
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=65.24 E-value=23 Score=32.63 Aligned_cols=73 Identities=5% Similarity=0.028 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCcchh-hhhhCCCCccCHHHHHHHHHHHHHHc
Q 018657 112 VTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLD-LQIFDPRFVFEPKTVQRMELRVMSVL 188 (352)
Q Consensus 112 ~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~d-l~~~~~~~~f~~~~I~~mE~~IL~~L 188 (352)
....+|..++..-+.....-. +....||+||+++|++......|.... +.. .....++.++|...=..|+..+
T Consensus 186 ~l~~~A~~~l~~sl~t~~~l~---~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~-~~~~~~~~~~l~~~~~~i~~l~ 259 (323)
T 1jkw_A 186 ILRKTADDFLNRIALTDAYLL---YTPSQIALTAILSSASRAGITMESYLSESLM-LKENRTCLSQLLDIMKSMRNLV 259 (323)
T ss_dssp HHHHHHHHHHHHHTTSTHHHH---SCHHHHHHHHHHHHHHHHSCCCTTHHHHHTT-SCSSSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHc---CCHHHHHHHHHHHHHHHcCCChHHHHHHHhc-cccccccHHHHHHHHHHHHHHH
Confidence 445667677665443332222 367899999999999987765454222 211 1123456667766666665544
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=62.35 E-value=26 Score=31.98 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccCCCc----chhhhhhCCCCccCHHHHHHHHHHHHHHcC
Q 018657 116 LSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQVPL----LLDLQIFDPRFVFEPKTVQRMELRVMSVLN 189 (352)
Q Consensus 116 lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~----~~dl~~~~~~~~f~~~~I~~mE~~IL~~L~ 189 (352)
.|-++++.-+....+-. .....+|+||+++|.+.-+..++. ...+... + .++.++|...-..|+..+.
T Consensus 195 ~a~~~l~lsl~d~~~l~---~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-t--g~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 195 HAQTFLALCATDYTFAM---YPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-T--GTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HHHHHHHHHHHCGGGTT---SCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-H--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcc---CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-H--CCCHHHHHHHHHHHHHHHH
Confidence 34444443333333333 377899999999999987653322 1223222 2 3678888888777777664
No 39
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=60.19 E-value=25 Score=31.21 Aligned_cols=87 Identities=8% Similarity=0.014 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCChhHH----HHHHHHHHhhhhcccccCCCCCchHHHHHHHHHHHhhhhccC---CCc-----chhhhh
Q 018657 98 NWILNVHANYKFRPVTA----LLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSLAAKMEETQ---VPL-----LLDLQI 165 (352)
Q Consensus 98 ~Wi~~v~~~~~l~~~T~----~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~LAaK~eE~~---~p~-----~~dl~~ 165 (352)
+|+......++++.++. ..|..+++..+....+-. ...-.+|+||+++|.+.-+.. .+. ...+..
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~---~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFIS---NPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHH---SCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhc---cCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 34444455555554432 234444443322222212 366789999999999875421 111 122332
Q ss_pred hCCCCccCHHHHHHHHHHHHHHcCc
Q 018657 166 FDPRFVFEPKTVQRMELRVMSVLNW 190 (352)
Q Consensus 166 ~~~~~~f~~~~I~~mE~~IL~~L~w 190 (352)
. + .++..+|...-..|+..++=
T Consensus 236 ~-~--~v~~~~l~~c~~~i~~l~~~ 257 (271)
T 2w96_A 236 V-I--KCDPDCLRACQEQIEALLES 257 (271)
T ss_dssp H-H--TSCHHHHHHHHHHHHHHHTT
T ss_pred H-H--CcCHHHHHHHHHHHHHHHHH
Confidence 2 2 36888998888888887653
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=38.92 E-value=1.2e+02 Score=22.63 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=52.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhhhhccc-ccC-CCCCchHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 100 ILNVHANYKFRPVTALLSVNYFDRFLSSHF-LPL-ANGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 100 i~~v~~~~~l~~~T~~lAv~~lDRfls~~~-i~~-~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
|.+++..||+.. ..-.|-.+|++|=..-. ..+ +-+-.--...++|+|.|||..-..++..+ |... ....+.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~K-L~~~---s~lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNK-MVAT---SGVKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHH-HHHT---TCBCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHH-HHHH---HCCCHHHH
Confidence 356788888876 77788899999964421 000 00123456788999999999887766533 2221 23567777
Q ss_pred HHHHHHHHH
Q 018657 178 QRMELRVMS 186 (352)
Q Consensus 178 ~~mE~~IL~ 186 (352)
.+.+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665544
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=29.46 E-value=35 Score=27.26 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHc---CCChhHHHHHHHHHHhhhhccc-ccCC--CCCchHHHHHHHHHHHhhhh--ccCCCcc
Q 018657 94 QDSINWILNVHANY---KFRPVTALLSVNYFDRFLSSHF-LPLA--NGWPLQLLSVACLSLAAKME--ETQVPLL 160 (352)
Q Consensus 94 ~~~v~Wi~~v~~~~---~l~~~T~~lAv~~lDRfls~~~-i~~~--~~~~lqLlavaCL~LAaK~e--E~~~p~~ 160 (352)
.++|-|+..|-+.+ |.....+..-.|++=-|+..+. +..+ ....+|-+..|||+||--|- |+..|.-
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYPLK 102 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLK 102 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCCSG
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhcccccccCc
Confidence 56899999998865 3333333333333333333222 2111 23589999999999998884 5545543
No 42
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=28.38 E-value=1.2e+02 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 138 LQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 138 lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
-.|+-++|-.+|.++....+--+..+.-+ .+-|++++-
T Consensus 119 k~Lldl~c~~vA~~ikgktpeeiR~~f~I--~nd~t~eEe 156 (169)
T 3v7d_A 119 KPLLDAGCKVVAEMIRGRSPEEIRRTFNI--VNDFTPEEE 156 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTC--CCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCC--CCCCCHHHH
Confidence 46888999999999887654444544333 344777654
No 43
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=27.48 E-value=2e+02 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 138 LQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 138 lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
-.|+-++|-++|.++....+-.+..+.-+ .+-|++++-
T Consensus 112 ~~Lld~~c~~va~~i~gkt~eeir~~f~I--~~d~t~eEe 149 (159)
T 2ast_A 112 KGLLDVTCKTVANMIKGKTPEEIRKTFNI--KNDFTEEEE 149 (159)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHTTC--CCCSCTTHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCC--CCCCCHHHH
Confidence 45778999999999987644444444333 234665543
No 44
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=25.60 E-value=1.5e+02 Score=26.90 Aligned_cols=62 Identities=13% Similarity=-0.029 Sum_probs=41.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhhhhc----ccccCCCCCchHHHHHHHHHHHhhhhccCCCcchhhhh
Q 018657 100 ILNVHANYKFRPVTALLSVNYFDRFLSS----HFLPLANGWPLQLLSVACLSLAAKMEETQVPLLLDLQI 165 (352)
Q Consensus 100 i~~v~~~~~l~~~T~~lAv~~lDRfls~----~~i~~~~~~~lqLlavaCL~LAaK~eE~~~p~~~dl~~ 165 (352)
..++|..++++..|.-.|...+.+.-+. ..... .-+..-.+|||+|+.-.+....++.++..
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~----~~~~~w~acLY~a~~~~~~n~vsLt~LLr 71 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQ----KKKELWGICIFIAAVDLDEMSFTFTELQK 71 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCcc----chHHHHHHhHHHHhhccCCCcCcHHHHHH
Confidence 3567889999999999999999996553 12333 45556667799999755544445555443
No 45
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=25.06 E-value=3.2e+02 Score=24.03 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=31.5
Q ss_pred CccHHHHHHHHHHHHHhccCCCCCc-----ccc--CCCHHHHHHHHHHHHHHH
Q 018657 240 GFAPSTIAAAAVLCAAGESLDSPAI-----CHQ--RLNEEMVRSCHQLMEEYL 285 (352)
Q Consensus 240 ~~~PS~iAaAai~~a~~~~~~~~~~-----~~~--~~~~e~l~~C~~~i~~~~ 285 (352)
....-.+|+||+++|.+.-...++. .++ .+++++|.++-..|.+.+
T Consensus 90 ~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 90 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 4567788999999997543332321 122 588999999888887654
No 46
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=22.78 E-value=1.3e+02 Score=25.46 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHhhhhcccccCCCCCchHHHHHHHHHH---HhhhhccCCCcchhhhhh
Q 018657 90 VTARQDSINWILNVHANYKFRPVTALLSVNYFDRFLSSHFLPLANGWPLQLLSVACLSL---AAKMEETQVPLLLDLQIF 166 (352)
Q Consensus 90 ~~~R~~~v~Wi~~v~~~~~l~~~T~~lAv~~lDRfls~~~i~~~~~~~lqLlavaCL~L---AaK~eE~~~p~~~dl~~~ 166 (352)
...|.-+ ...++.|..+|++..-++.++.++++ + ++.-|..+=+.| |.|. .. .|.+.++.
T Consensus 112 F~~~eNI-~~FL~ac~~~Gvp~~~lFet~DL~e~----k--------n~~~V~~cL~aL~~~a~~~-G~-~P~i~~l~-- 174 (193)
T 3i6x_A 112 FRHTDNV-IQWLNAMDEIGLPKIFYPETTDIYDR----K--------NMPRCIYCIHALSLYLFKL-GL-APQIQDLY-- 174 (193)
T ss_dssp GGGHHHH-HHHHHHHHHHTCCGGGCCCHHHHHSC----S--------CHHHHHHHHHHHHHHHHHT-TS-SCCCCCCT--
T ss_pred hHHHHHH-HHHHHHHHHcCCCcccCCCcHHHhcC----C--------CHHHHHHHHHHHHHHHhhC-CC-CCCccccc--
Confidence 3344444 44456788999998877777777653 1 222222211122 2232 23 46666652
Q ss_pred CCCCccCHHHHHHHHHHH
Q 018657 167 DPRFVFEPKTVQRMELRV 184 (352)
Q Consensus 167 ~~~~~f~~~~I~~mE~~I 184 (352)
.+..|+.++|.+|+..+
T Consensus 175 -g~~~Ft~eei~~~~~~l 191 (193)
T 3i6x_A 175 -GKVDFTEEEINNMKTEL 191 (193)
T ss_dssp -TTCCCCHHHHHHHHHHT
T ss_pred -CCCCcCHHHHHHHHHHh
Confidence 46679999999998764
No 47
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=21.81 E-value=2.2e+02 Score=23.74 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHc---CCChhHHHHHHHHHHhhhhccc-ccCC--CCCchHHHHHHHHHHHhhhh--ccCCCcchhhhh
Q 018657 94 QDSINWILNVHANY---KFRPVTALLSVNYFDRFLSSHF-LPLA--NGWPLQLLSVACLSLAAKME--ETQVPLLLDLQI 165 (352)
Q Consensus 94 ~~~v~Wi~~v~~~~---~l~~~T~~lAv~~lDRfls~~~-i~~~--~~~~lqLlavaCL~LAaK~e--E~~~p~~~dl~~ 165 (352)
.++|-|+..|-+.+ |.....+..-.|++=-||..+. +..+ ....+|-+.++||+||--|- |+..|.-.-+ +
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te~eLqa~vLTCLYlsYSYmGNEISYPLKPFl-v 151 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFL-V 151 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGC-C
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHhhCccccccCccee-e
Confidence 56899999988865 3333333222233333333222 1111 23589999999999998884 4545543333 3
Q ss_pred hCCCCccCHHHHHHHHHHHHHHcCccccc--CChHHHHHHHHHh
Q 018657 166 FDPRFVFEPKTVQRMELRVMSVLNWRLNS--ITPFDYLHYFISK 207 (352)
Q Consensus 166 ~~~~~~f~~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~fl~~ 207 (352)
.. +++.+-.-=+.|+..+.=+|-. ..|.-|-+-|...
T Consensus 152 e~-----~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eL 190 (208)
T 1unl_D 152 ES-----CKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDL 190 (208)
T ss_dssp SS-----CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cC-----CHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHH
Confidence 21 2333333333444444333322 2466666666543
No 48
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=21.02 E-value=1.8e+02 Score=22.90 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhhcc
Q 018657 138 LQLLSVACLSLAAKMEET 155 (352)
Q Consensus 138 lqLlavaCL~LAaK~eE~ 155 (352)
-.|+-++|-++|..+...
T Consensus 107 ~~Lldl~c~~vA~~ikgk 124 (141)
T 1fs1_B 107 KGLLDVTCKTVANMIKGK 124 (141)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 357778888888888664
No 49
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.90 E-value=1.2e+02 Score=24.42 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhhhccCCCcchhhhhhCCCCccCHHHH
Q 018657 138 LQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTV 177 (352)
Q Consensus 138 lqLlavaCL~LAaK~eE~~~p~~~dl~~~~~~~~f~~~~I 177 (352)
-.|+-++|-++|..+....+--+..+.-+ .+-|++++-
T Consensus 111 ~~Lldl~c~~vA~~ikgkt~eeir~~f~I--~nd~t~eEe 148 (160)
T 2p1m_A 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNI--KNDFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTC--CCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCC--CCCCCHHHH
Confidence 35788999999999977644445554333 334776654
Done!