BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018658
         (352 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
           Mycob Smegmatis
          Length = 263

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 4/156 (2%)

Query: 178 QARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDE 237
           QARE +     D + ++ + I+  +A   +   CEL  L D V   +  R  +  +    
Sbjct: 83  QARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLG- 141

Query: 238 EIHKLKDEIKIMSAHWKLKTKEL---ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRK 294
            +  L    ++  A  K K  +L      L  +      L  R++     L EA A  ++
Sbjct: 142 ILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQR 201

Query: 295 LQRMGERRDKAIKELRDQLAAKQQDAHVGTEKQNFW 330
           + RM     +A+K+  ++   +   A +  E+  F+
Sbjct: 202 IARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFY 237


>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
 pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
          Length = 263

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 9/48 (18%)

Query: 21  VPAREIDPLLKDLNEKKQ---------SFRKNVVSLAAELKEVRTRLA 59
           +   E+D LLKDL EK +         +++KN+++L+   K  RT LA
Sbjct: 208 IDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLA 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,332,557
Number of Sequences: 62578
Number of extensions: 251686
Number of successful extensions: 1301
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 152
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)