Query 018658
Match_columns 352
No_of_seqs 21 out of 23
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 02:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 98.0 0.0068 1.5E-07 69.6 29.0 219 43-291 1091-1309(1930)
2 PRK02224 chromosome segregatio 98.0 0.027 5.8E-07 57.7 31.9 248 20-285 460-707 (880)
3 TIGR02168 SMC_prok_B chromosom 97.9 0.037 8.1E-07 56.1 32.2 30 150-179 799-828 (1179)
4 TIGR02168 SMC_prok_B chromosom 97.6 0.13 2.7E-06 52.4 31.4 27 32-58 681-707 (1179)
5 TIGR00606 rad50 rad50. This fa 97.3 0.37 8.1E-06 52.9 29.1 235 26-296 693-929 (1311)
6 COG1196 Smc Chromosome segrega 96.9 0.85 1.9E-05 49.6 30.5 15 252-266 946-960 (1163)
7 TIGR00606 rad50 rad50. This fa 96.8 1.2 2.6E-05 49.1 29.8 88 39-126 748-843 (1311)
8 COG1196 Smc Chromosome segrega 96.5 1.6 3.6E-05 47.5 32.6 77 28-104 667-743 (1163)
9 PF00038 Filament: Intermediat 96.5 0.62 1.3E-05 42.3 25.5 219 82-315 52-280 (312)
10 PF00038 Filament: Intermediat 96.2 0.94 2E-05 41.1 23.8 224 77-315 18-255 (312)
11 PRK02224 chromosome segregatio 95.9 2.5 5.5E-05 43.7 28.8 19 45-63 254-272 (880)
12 TIGR03185 DNA_S_dndD DNA sulfu 95.8 2.6 5.5E-05 43.1 28.3 97 26-125 214-313 (650)
13 PRK11637 AmiB activator; Provi 95.5 2.6 5.7E-05 40.8 23.8 66 149-227 91-156 (428)
14 PF09738 DUF2051: Double stran 95.5 0.09 2E-06 50.6 9.2 86 23-122 79-164 (302)
15 TIGR03185 DNA_S_dndD DNA sulfu 95.4 3.7 8E-05 42.0 24.9 94 26-127 184-277 (650)
16 PF07888 CALCOCO1: Calcium bin 94.7 6.5 0.00014 41.3 24.0 51 247-297 349-399 (546)
17 KOG0977 Nuclear envelope prote 94.6 6.9 0.00015 41.1 22.8 214 19-258 87-311 (546)
18 KOG0612 Rho-associated, coiled 93.6 17 0.00036 41.8 27.7 203 47-274 466-693 (1317)
19 PF07888 CALCOCO1: Calcium bin 93.2 13 0.00028 39.2 27.1 61 233-300 367-434 (546)
20 PRK04778 septation ring format 93.0 12 0.00025 38.1 19.9 180 56-245 289-491 (569)
21 PRK09039 hypothetical protein; 92.7 10 0.00022 36.7 20.0 58 257-316 153-210 (343)
22 PF09726 Macoilin: Transmembra 92.6 9.9 0.00021 40.6 17.7 68 37-104 483-572 (697)
23 PF10174 Cast: RIM-binding pro 92.4 19 0.00041 39.2 27.8 99 222-320 223-338 (775)
24 KOG0161 Myosin class II heavy 92.1 32 0.0007 41.1 25.5 179 81-317 1692-1877(1930)
25 PF05335 DUF745: Protein of un 91.3 3.1 6.7E-05 38.0 10.8 94 79-179 69-169 (188)
26 PRK04778 septation ring format 90.9 20 0.00044 36.5 18.7 241 45-287 252-508 (569)
27 PF01576 Myosin_tail_1: Myosin 90.4 0.08 1.7E-06 56.3 0.0 161 32-199 339-499 (859)
28 PF01576 Myosin_tail_1: Myosin 90.0 0.09 1.9E-06 55.9 0.0 223 65-296 168-397 (859)
29 PF05667 DUF812: Protein of un 89.7 28 0.00061 36.6 17.5 148 153-314 327-478 (594)
30 smart00787 Spc7 Spc7 kinetocho 89.6 4.8 0.0001 38.8 11.2 15 163-177 273-287 (312)
31 COG0419 SbcC ATPase involved i 89.5 33 0.00071 36.7 30.2 57 145-201 387-443 (908)
32 PF12128 DUF3584: Protein of u 89.3 41 0.00088 37.5 27.3 184 103-296 460-662 (1201)
33 PF03915 AIP3: Actin interacti 88.7 4.8 0.0001 40.7 10.9 203 31-275 74-295 (424)
34 PF06160 EzrA: Septation ring 88.6 31 0.00068 35.3 19.4 213 25-249 249-491 (560)
35 PF09787 Golgin_A5: Golgin sub 88.0 32 0.0007 34.8 25.5 148 162-317 215-382 (511)
36 PF15294 Leu_zip: Leucine zipp 88.0 6.7 0.00015 38.1 10.9 85 156-246 192-276 (278)
37 KOG0971 Microtubule-associated 87.9 47 0.001 37.9 18.2 78 85-173 397-474 (1243)
38 PF09726 Macoilin: Transmembra 87.7 44 0.00094 35.9 21.7 217 38-315 421-654 (697)
39 PF09730 BicD: Microtubule-ass 86.4 22 0.00047 38.5 14.6 160 111-296 264-425 (717)
40 PF05701 WEMBL: Weak chloropla 86.3 41 0.00089 34.2 22.7 30 160-189 336-365 (522)
41 PF00261 Tropomyosin: Tropomyo 86.0 26 0.00057 31.8 22.4 50 45-101 4-53 (237)
42 COG4942 Membrane-bound metallo 84.7 51 0.0011 33.9 21.3 67 50-123 39-105 (420)
43 PRK11637 AmiB activator; Provi 84.3 42 0.00092 32.7 25.3 28 32-59 44-71 (428)
44 PHA02562 46 endonuclease subun 83.5 47 0.001 32.5 22.4 28 73-100 170-197 (562)
45 KOG0946 ER-Golgi vesicle-tethe 83.0 31 0.00068 38.6 14.1 138 25-180 689-832 (970)
46 PHA02562 46 endonuclease subun 82.8 50 0.0011 32.3 23.1 28 256-283 380-407 (562)
47 PF08614 ATG16: Autophagy prot 81.7 4.6 0.0001 35.5 6.2 94 16-123 62-162 (194)
48 PRK10246 exonuclease subunit S 80.1 1E+02 0.0022 34.0 33.8 77 165-243 721-797 (1047)
49 PF09755 DUF2046: Uncharacteri 80.1 67 0.0014 32.0 24.8 156 14-175 13-192 (310)
50 PRK03918 chromosome segregatio 79.7 81 0.0018 32.7 28.8 6 116-121 507-512 (880)
51 KOG0977 Nuclear envelope prote 78.0 1E+02 0.0022 32.8 24.4 62 49-124 42-104 (546)
52 PF04156 IncA: IncA protein; 77.7 44 0.00095 28.6 11.7 72 47-118 79-150 (191)
53 PF08614 ATG16: Autophagy prot 76.1 23 0.0005 31.2 8.8 112 136-278 70-181 (194)
54 PRK04863 mukB cell division pr 76.0 1.7E+02 0.0036 34.4 30.5 81 185-274 452-539 (1486)
55 smart00806 AIP3 Actin interact 75.9 1E+02 0.0022 31.9 18.9 201 32-268 75-292 (426)
56 PF05557 MAD: Mitotic checkpoi 73.5 1.1 2.3E-05 46.4 0.0 49 256-304 258-306 (722)
57 PRK04863 mukB cell division pr 73.1 2E+02 0.0042 33.8 22.3 49 150-198 372-420 (1486)
58 COG1579 Zn-ribbon protein, pos 72.8 90 0.002 29.8 15.3 38 208-245 160-198 (239)
59 COG1579 Zn-ribbon protein, pos 72.6 91 0.002 29.8 17.3 65 140-204 6-74 (239)
60 PF05701 WEMBL: Weak chloropla 72.5 1.2E+02 0.0026 31.0 25.4 42 160-201 280-321 (522)
61 PF00261 Tropomyosin: Tropomyo 70.8 83 0.0018 28.6 23.6 38 258-295 186-223 (237)
62 PF06818 Fez1: Fez1; InterPro 70.5 37 0.0008 31.8 9.2 115 43-178 32-148 (202)
63 PRK01156 chromosome segregatio 70.5 1.5E+02 0.0032 31.4 27.3 34 221-254 672-705 (895)
64 PF08172 CASP_C: CASP C termin 68.2 30 0.00064 32.7 8.1 118 171-299 2-137 (248)
65 KOG4674 Uncharacterized conser 67.9 2.8E+02 0.0062 33.6 28.4 250 12-317 621-892 (1822)
66 PF05266 DUF724: Protein of un 67.3 59 0.0013 29.6 9.6 78 226-315 93-170 (190)
67 KOG0996 Structural maintenance 67.2 2.6E+02 0.0056 32.8 27.3 259 36-310 335-607 (1293)
68 KOG0933 Structural maintenance 66.5 2.5E+02 0.0055 32.5 18.4 190 78-287 678-900 (1174)
69 KOG0996 Structural maintenance 66.0 2.7E+02 0.0059 32.7 26.6 257 28-303 813-1137(1293)
70 TIGR03007 pepcterm_ChnLen poly 64.4 1.5E+02 0.0032 29.0 20.2 43 161-203 254-296 (498)
71 PF08317 Spc7: Spc7 kinetochor 63.1 1.4E+02 0.0031 28.4 15.5 15 113-127 210-224 (325)
72 KOG2412 Nuclear-export-signal 62.6 31 0.00068 36.9 7.8 77 210-286 170-248 (591)
73 PF08317 Spc7: Spc7 kinetochor 62.4 1.5E+02 0.0032 28.3 14.6 141 90-255 151-296 (325)
74 PF01608 I_LWEQ: I/LWEQ domain 62.1 16 0.00034 32.7 4.9 34 254-299 115-148 (152)
75 KOG0612 Rho-associated, coiled 60.7 3.4E+02 0.0074 32.0 23.7 42 158-200 620-661 (1317)
76 PTZ00491 major vault protein; 59.2 1.9E+02 0.0041 32.5 13.1 86 138-228 739-839 (850)
77 PF09730 BicD: Microtubule-ass 59.2 1.9E+02 0.0041 31.7 13.0 103 19-139 344-446 (717)
78 PF08232 Striatin: Striatin fa 58.8 23 0.0005 30.3 5.2 42 256-297 33-74 (134)
79 KOG0018 Structural maintenance 58.8 3.5E+02 0.0075 31.5 19.1 142 148-317 705-847 (1141)
80 PF10186 Atg14: UV radiation r 58.5 1.3E+02 0.0029 26.6 14.2 46 272-317 115-161 (302)
81 PRK09841 cryptic autophosphory 57.8 2.5E+02 0.0055 29.6 13.8 61 65-125 253-324 (726)
82 PF10267 Tmemb_cc2: Predicted 57.6 1.9E+02 0.0042 29.4 12.1 60 226-295 265-328 (395)
83 TIGR02680 conserved hypothetic 57.4 3.5E+02 0.0076 31.1 23.0 21 295-315 430-450 (1353)
84 PRK12704 phosphodiesterase; Pr 57.1 93 0.002 32.1 10.0 10 324-333 331-340 (520)
85 PF10168 Nup88: Nuclear pore c 56.2 1.5E+02 0.0033 32.0 11.7 87 39-129 562-656 (717)
86 PF00769 ERM: Ezrin/radixin/mo 56.1 1.7E+02 0.0038 27.2 12.3 53 159-218 174-233 (246)
87 PF10267 Tmemb_cc2: Predicted 56.0 1.5E+02 0.0033 30.2 11.0 110 25-167 209-318 (395)
88 PF14282 FlxA: FlxA-like prote 55.7 43 0.00092 27.6 6.1 35 14-48 5-39 (106)
89 PF13863 DUF4200: Domain of un 55.6 1.1E+02 0.0023 24.6 8.7 63 32-94 36-98 (126)
90 PF12718 Tropomyosin_1: Tropom 55.2 1.4E+02 0.003 25.9 12.5 60 78-137 15-74 (143)
91 PRK09039 hypothetical protein; 54.7 2.2E+02 0.0047 27.8 16.4 13 191-203 174-186 (343)
92 PF07106 TBPIP: Tat binding pr 53.2 83 0.0018 26.9 7.7 61 23-95 74-134 (169)
93 TIGR03007 pepcterm_ChnLen poly 53.1 2.3E+02 0.005 27.7 12.4 22 79-100 256-277 (498)
94 cd07591 BAR_Rvs161p The Bin/Am 52.9 1E+02 0.0022 28.3 8.6 100 73-183 14-121 (224)
95 PF04156 IncA: IncA protein; 52.1 1.5E+02 0.0033 25.3 13.6 36 155-190 82-117 (191)
96 PF10168 Nup88: Nuclear pore c 51.1 3.6E+02 0.0077 29.3 16.3 133 108-252 575-714 (717)
97 KOG4674 Uncharacterized conser 50.9 5.5E+02 0.012 31.4 30.1 254 42-304 766-1053(1822)
98 PF05557 MAD: Mitotic checkpoi 50.4 5.2 0.00011 41.5 0.0 42 274-315 383-424 (722)
99 KOG4809 Rab6 GTPase-interactin 50.4 1.7E+02 0.0037 31.8 10.8 77 106-203 332-408 (654)
100 COG3096 MukB Uncharacterized p 50.3 4.6E+02 0.0099 30.3 15.3 161 94-271 372-536 (1480)
101 TIGR01843 type_I_hlyD type I s 49.8 2.2E+02 0.0047 26.4 17.0 25 32-56 78-102 (423)
102 PF12325 TMF_TATA_bd: TATA ele 49.5 1.6E+02 0.0035 25.3 8.8 67 24-94 19-85 (120)
103 PF04799 Fzo_mitofusin: fzo-li 49.4 52 0.0011 30.2 6.1 26 73-98 116-141 (171)
104 smart00307 ILWEQ I/LWEQ domain 48.2 34 0.00075 31.8 4.9 34 254-299 163-196 (200)
105 TIGR03752 conj_TIGR03752 integ 46.0 78 0.0017 33.1 7.5 70 37-120 54-124 (472)
106 PF06657 Cep57_MT_bd: Centroso 44.8 59 0.0013 25.9 5.1 25 77-101 50-74 (79)
107 PF05529 Bap31: B-cell recepto 43.1 1.3E+02 0.0028 26.2 7.4 53 45-97 121-174 (192)
108 PF12128 DUF3584: Protein of u 42.5 5.5E+02 0.012 29.0 28.2 41 163-206 727-767 (1201)
109 PF05266 DUF724: Protein of un 42.4 2.7E+02 0.0059 25.4 10.9 52 73-124 127-185 (190)
110 PF10186 Atg14: UV radiation r 42.1 2.5E+02 0.0054 24.9 13.8 19 111-129 90-108 (302)
111 PF08702 Fib_alpha: Fibrinogen 41.8 2.4E+02 0.0052 24.7 14.0 55 270-324 83-138 (146)
112 PF09787 Golgin_A5: Golgin sub 41.7 4E+02 0.0086 27.2 19.0 92 40-131 114-233 (511)
113 PF07106 TBPIP: Tat binding pr 41.6 1.2E+02 0.0026 26.0 6.9 24 234-257 142-165 (169)
114 KOG0250 DNA repair protein RAD 40.0 6.6E+02 0.014 29.2 27.1 198 78-305 229-441 (1074)
115 KOG4643 Uncharacterized coiled 39.8 1.8E+02 0.0038 33.7 9.4 91 11-120 154-244 (1195)
116 KOG0963 Transcription factor/C 39.0 5.6E+02 0.012 28.1 23.4 54 224-277 279-339 (629)
117 PF04871 Uso1_p115_C: Uso1 / p 38.7 2.6E+02 0.0056 24.2 10.2 35 133-170 80-114 (136)
118 PRK00106 hypothetical protein; 38.6 2.6E+02 0.0057 29.5 10.0 10 324-333 346-355 (535)
119 PRK10884 SH3 domain-containing 38.2 3E+02 0.0066 25.4 9.3 28 39-66 90-117 (206)
120 KOG0250 DNA repair protein RAD 37.9 7.1E+02 0.015 29.0 26.3 27 289-315 464-490 (1074)
121 PF01496 V_ATPase_I: V-type AT 37.8 2.5E+02 0.0054 29.7 9.7 12 330-341 341-352 (759)
122 cd08784 Death_DRs Death Domain 37.7 30 0.00065 26.9 2.4 31 214-244 3-33 (79)
123 PF10473 CENP-F_leu_zip: Leuci 37.6 2.9E+02 0.0064 24.5 13.2 126 30-173 12-138 (140)
124 PF13863 DUF4200: Domain of un 37.5 2.2E+02 0.0047 22.9 11.6 87 80-176 24-110 (126)
125 PF12718 Tropomyosin_1: Tropom 37.1 2.8E+02 0.006 24.0 9.8 82 30-116 37-119 (143)
126 PF05791 Bacillus_HBL: Bacillu 36.5 2.4E+02 0.0052 25.1 8.1 71 29-102 111-181 (184)
127 PRK10803 tol-pal system protei 36.4 60 0.0013 30.3 4.6 67 55-121 39-105 (263)
128 PTZ00446 vacuolar sorting prot 36.3 3.6E+02 0.0077 25.0 11.3 103 157-278 77-182 (191)
129 PF09789 DUF2353: Uncharacteri 36.1 4.6E+02 0.0099 26.2 10.8 142 32-178 137-317 (319)
130 PF15272 BBP1_C: Spindle pole 35.8 2.1E+02 0.0046 26.8 8.0 32 233-268 103-134 (196)
131 PF04799 Fzo_mitofusin: fzo-li 35.5 51 0.0011 30.3 3.9 32 236-267 126-163 (171)
132 KOG0288 WD40 repeat protein Ti 35.1 1.5E+02 0.0033 31.1 7.5 62 49-111 13-81 (459)
133 KOG0994 Extracellular matrix g 34.5 9E+02 0.02 29.2 15.5 20 75-94 1610-1629(1758)
134 PRK10884 SH3 domain-containing 34.4 3.8E+02 0.0082 24.8 9.4 41 237-277 100-140 (206)
135 PF13094 CENP-Q: CENP-Q, a CEN 33.6 3E+02 0.0066 23.4 9.3 69 25-93 17-85 (160)
136 PF06120 Phage_HK97_TLTM: Tail 33.6 4.8E+02 0.01 25.8 10.4 19 40-58 46-64 (301)
137 PF09738 DUF2051: Double stran 33.4 4.8E+02 0.01 25.7 10.8 72 79-164 107-178 (302)
138 KOG0804 Cytoplasmic Zn-finger 33.2 4.5E+02 0.0098 28.0 10.6 110 157-295 335-447 (493)
139 PF06419 COG6: Conserved oligo 33.0 2.4E+02 0.0052 29.5 8.7 68 55-125 26-93 (618)
140 PRK11519 tyrosine kinase; Prov 32.9 6.2E+02 0.013 26.8 12.8 48 76-123 266-322 (719)
141 PF06818 Fez1: Fez1; InterPro 32.8 4.3E+02 0.0094 25.0 17.2 159 108-292 27-189 (202)
142 PF06705 SF-assemblin: SF-asse 32.7 3.9E+02 0.0084 24.4 19.9 198 49-248 5-215 (247)
143 TIGR01005 eps_transp_fam exopo 32.4 6E+02 0.013 26.5 19.4 15 112-126 237-251 (754)
144 PF12711 Kinesin-relat_1: Kine 32.2 2.7E+02 0.0058 23.2 7.2 57 237-312 24-85 (86)
145 PF03148 Tektin: Tektin family 32.2 5.1E+02 0.011 25.6 11.6 23 79-101 274-296 (384)
146 KOG4787 Uncharacterized conser 32.1 2.9E+02 0.0063 30.7 9.2 121 144-276 700-827 (852)
147 COG2433 Uncharacterized conser 32.1 3.5E+02 0.0077 29.7 9.8 21 261-281 487-507 (652)
148 KOG4552 Vitamin-D-receptor int 31.8 1.4E+02 0.0031 29.2 6.4 68 227-305 47-125 (272)
149 PF10174 Cast: RIM-binding pro 31.7 7.5E+02 0.016 27.4 28.0 249 33-309 236-519 (775)
150 TIGR03017 EpsF chain length de 31.6 4.7E+02 0.01 25.1 19.8 53 75-127 169-230 (444)
151 PRK03918 chromosome segregatio 31.5 6.3E+02 0.014 26.5 30.5 7 307-313 506-512 (880)
152 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.5 3.1E+02 0.0068 22.9 13.7 22 157-178 108-129 (132)
153 PF05911 DUF869: Plant protein 31.4 7.6E+02 0.017 27.4 13.4 161 30-197 556-716 (769)
154 PF10158 LOH1CR12: Tumour supp 31.2 3.6E+02 0.0077 23.5 9.6 78 42-129 27-104 (131)
155 PF14197 Cep57_CLD_2: Centroso 31.1 2.6E+02 0.0057 21.9 7.4 65 47-125 3-67 (69)
156 PF12522 UL73_N: Cytomegalovir 31.0 31 0.00068 23.7 1.4 14 4-17 13-26 (27)
157 PRK11638 lipopolysaccharide bi 30.8 1.2E+02 0.0026 29.7 5.8 49 240-291 182-231 (342)
158 TIGR03319 YmdA_YtgF conserved 30.6 4.3E+02 0.0094 27.4 9.9 8 324-331 325-332 (514)
159 TIGR01843 type_I_hlyD type I s 30.1 4.5E+02 0.0098 24.4 15.8 11 233-243 315-325 (423)
160 KOG1854 Mitochondrial inner me 29.9 8E+02 0.017 27.2 17.7 169 126-315 214-400 (657)
161 PF05622 HOOK: HOOK protein; 29.8 17 0.00038 37.8 0.0 45 71-119 261-305 (713)
162 PF10779 XhlA: Haemolysin XhlA 29.2 2.6E+02 0.0057 21.3 6.3 47 272-318 2-48 (71)
163 PF04508 Pox_A_type_inc: Viral 28.6 61 0.0013 21.5 2.3 21 238-269 2-22 (23)
164 PF06034 DUF919: Nucleopolyhed 28.5 1.1E+02 0.0024 24.1 4.2 18 237-254 11-28 (62)
165 PF08581 Tup_N: Tup N-terminal 28.0 2.8E+02 0.0061 22.4 6.5 52 38-99 28-79 (79)
166 PF06160 EzrA: Septation ring 27.7 7E+02 0.015 25.8 20.5 142 141-282 116-272 (560)
167 TIGR02132 phaR_Bmeg polyhydrox 27.5 1.1E+02 0.0023 29.0 4.6 43 156-198 81-123 (189)
168 PRK15471 chain length determin 26.9 1.6E+02 0.0034 28.8 5.8 48 241-291 162-210 (325)
169 PF12761 End3: Actin cytoskele 26.8 2.9E+02 0.0063 26.0 7.3 35 154-188 160-194 (195)
170 PRK10381 LPS O-antigen length 26.8 2.1E+02 0.0046 28.3 6.7 51 238-291 199-250 (377)
171 PF10212 TTKRSYEDQ: Predicted 26.6 6.2E+02 0.013 27.1 10.3 96 110-243 418-514 (518)
172 PF00531 Death: Death domain; 26.5 2.2E+02 0.0048 20.6 5.3 45 212-256 2-53 (83)
173 PF15397 DUF4618: Domain of un 26.2 6.2E+02 0.013 24.7 18.7 34 259-292 190-223 (258)
174 PF00435 Spectrin: Spectrin re 25.8 2.5E+02 0.0054 19.9 6.7 83 108-195 4-86 (105)
175 PF12325 TMF_TATA_bd: TATA ele 25.5 3.5E+02 0.0076 23.3 7.0 84 163-249 25-108 (120)
176 PF12240 Angiomotin_C: Angiomo 25.1 2.2E+02 0.0048 27.1 6.2 83 161-257 3-87 (205)
177 PF04859 DUF641: Plant protein 25.0 4.2E+02 0.0091 23.4 7.5 57 130-188 44-100 (131)
178 PF08202 MIS13: Mis12-Mtw1 pro 25.0 5.5E+02 0.012 24.6 8.9 109 209-318 138-275 (301)
179 PF05010 TACC: Transforming ac 25.0 5.8E+02 0.012 23.9 18.0 72 144-220 125-201 (207)
180 PF10805 DUF2730: Protein of u 24.6 4E+02 0.0087 21.9 7.9 63 233-299 31-95 (106)
181 COG0419 SbcC ATPase involved i 24.3 9.4E+02 0.02 26.1 28.2 50 140-189 277-326 (908)
182 PF08100 Dimerisation: Dimeris 24.2 1.1E+02 0.0023 22.8 3.3 39 194-232 7-47 (51)
183 TIGR02231 conserved hypothetic 23.8 6.8E+02 0.015 25.2 9.7 87 168-281 71-171 (525)
184 KOG4673 Transcription factor T 23.8 1.1E+03 0.024 26.9 21.0 39 138-179 468-506 (961)
185 PF03962 Mnd1: Mnd1 family; I 23.6 5.5E+02 0.012 23.2 9.7 42 38-79 65-106 (188)
186 PF05622 HOOK: HOOK protein; 23.5 27 0.00058 36.5 0.0 100 78-178 292-401 (713)
187 PF09969 DUF2203: Uncharacteri 23.5 2.7E+02 0.006 23.7 6.0 33 26-58 11-43 (120)
188 TIGR02977 phageshock_pspA phag 23.5 5.5E+02 0.012 23.2 12.6 108 25-140 28-148 (219)
189 PF03962 Mnd1: Mnd1 family; I 23.4 5.5E+02 0.012 23.1 9.1 57 30-94 71-127 (188)
190 PF06730 FAM92: FAM92 protein; 23.0 5.9E+02 0.013 24.4 8.6 69 162-252 69-139 (219)
191 KOG0709 CREB/ATF family transc 22.7 87 0.0019 32.9 3.4 38 261-298 278-315 (472)
192 PF02050 FliJ: Flagellar FliJ 22.7 3.3E+02 0.0071 20.2 11.2 74 130-203 42-119 (123)
193 cd09234 V_HD-PTP_like Protein- 22.6 6.9E+02 0.015 24.0 12.6 31 283-313 188-218 (337)
194 KOG4593 Mitotic checkpoint pro 22.5 1.1E+03 0.024 26.4 26.9 137 134-283 166-306 (716)
195 PF09602 PhaP_Bmeg: Polyhydrox 22.2 6.3E+02 0.014 23.4 8.9 40 156-205 39-78 (165)
196 PRK09174 F0F1 ATP synthase sub 22.1 6.1E+02 0.013 23.2 8.7 37 256-292 85-121 (204)
197 KOG0239 Kinesin (KAR3 subfamil 22.1 1E+03 0.022 25.8 16.1 100 169-274 169-274 (670)
198 PF15483 DUF4641: Domain of un 22.1 66 0.0014 33.6 2.4 21 110-130 423-443 (445)
199 cd08313 Death_TNFR1 Death doma 21.8 81 0.0017 25.3 2.4 31 213-243 2-32 (80)
200 KOG3091 Nuclear pore complex, 21.8 7.7E+02 0.017 26.5 9.9 62 143-204 337-398 (508)
201 COG4026 Uncharacterized protei 21.4 4E+02 0.0086 26.5 7.3 57 36-99 150-206 (290)
202 PF08657 DASH_Spc34: DASH comp 21.4 3.9E+02 0.0086 25.6 7.2 38 32-69 177-214 (259)
203 PF01442 Apolipoprotein: Apoli 21.3 4.4E+02 0.0095 21.2 16.7 13 166-178 87-99 (202)
204 PF03938 OmpH: Outer membrane 21.1 4.6E+02 0.01 21.6 6.8 13 19-31 17-29 (158)
205 PF02994 Transposase_22: L1 tr 21.0 2.8E+02 0.0061 27.4 6.3 38 254-291 150-187 (370)
206 KOG0980 Actin-binding protein 20.6 1.4E+03 0.029 26.6 16.9 115 33-157 429-543 (980)
207 KOG0247 Kinesin-like protein [ 20.5 9.4E+02 0.02 27.3 10.6 39 246-284 532-570 (809)
208 COG2178 Predicted RNA-binding 20.4 3.1E+02 0.0068 26.1 6.3 65 168-247 3-67 (204)
209 PRK13729 conjugal transfer pil 20.4 2.7E+02 0.0058 29.4 6.3 31 252-282 73-103 (475)
210 PLN03229 acetyl-coenzyme A car 20.2 4.8E+02 0.01 29.2 8.4 116 162-280 430-569 (762)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.00 E-value=0.0068 Score=69.58 Aligned_cols=219 Identities=26% Similarity=0.370 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhh
Q 018658 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLA 122 (352)
Q Consensus 43 NVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs 122 (352)
.|.-+-..+++...+++.-+..+..|=-+|..+|..-+.++.|+..|++.|++..+...+-..-.-+.-.|+-.||..|.
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666667777788888889999999999999999999999988888888888888889999998887
Q ss_pred HhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHH
Q 018658 123 ATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTI 202 (352)
Q Consensus 123 ~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ 202 (352)
-..-+-++..+... +.|.+.|..+++|+++++++.+-.+--...|.-|+..++..+=. .
T Consensus 1171 ee~~~~e~~~~~lr--------------------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~-~ 1229 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELR--------------------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQ-L 1229 (1930)
T ss_pred HHHHhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 65544443332222 88999999999999999999988887777777777777666531 1
Q ss_pred HHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH
Q 018658 203 AKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (352)
Q Consensus 203 akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLE 282 (352)
.++ +.+.|-.- +-+|.-+.-|..|++++.++..++..-..-=.+...+|.+|++.--..-..+=+..-.++
T Consensus 1230 ~~~--k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~ 1300 (1930)
T KOG0161|consen 1230 SSE--KKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALE 1300 (1930)
T ss_pred hhh--hccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 122 12222221 444455556677777777777665544444444444555555443333333333333333
Q ss_pred HHHHHHHHH
Q 018658 283 FCLQEARAQ 291 (352)
Q Consensus 283 fcLqEaRsQ 291 (352)
-=|++.+.|
T Consensus 1301 ~qle~~k~q 1309 (1930)
T KOG0161|consen 1301 SQLEELKRQ 1309 (1930)
T ss_pred HHHHHHHHH
Confidence 344444433
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=97.99 E-value=0.027 Score=57.67 Aligned_cols=248 Identities=16% Similarity=0.210 Sum_probs=140.9
Q ss_pred CCCccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 018658 20 SVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (352)
Q Consensus 20 s~~~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~Q 99 (352)
++...+.-.++.++.++.......+-.|-.++.+++.++...+..... +.....++.....+...+++..++
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~--------~~~l~~l~~~~~~l~~~~~~~~e~ 531 (880)
T PRK02224 460 PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA--------EDRIERLEERREDLEELIAERRET 531 (880)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444457888888988888888899999999999888876665322 333344555555555567777777
Q ss_pred hhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018658 100 LQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 100 L~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
+..-....+.+-.++..|++.+.-....++.--..+..+.--+..+-+++++-++.+++.++ +..+-..+..+...+..
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~ 610 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIER 610 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 77767777778888888888887776655554444445555566666666666665555552 33333333333333222
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHH
Q 018658 180 RESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKE 259 (352)
Q Consensus 180 RE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKE 259 (352)
.+.....|++.-- ++-+-+. .....+..+-..+++..++.+..-+.--...++.+..+|..+..--....++
T Consensus 611 ~~~~~~~l~~~~~----~~~~~l~----~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 682 (880)
T PRK02224 611 LREKREALAELND----ERRERLA----EKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682 (880)
T ss_pred HHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222211 1111111 1122222333336777788887777777778888877777665555544444
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 018658 260 LESQLEKQRRADQELKKRVLKLEFCL 285 (352)
Q Consensus 260 LEsQlekqrR~dQELKKrVlKLEfcL 285 (352)
+. .++.+.-.-.++++++-+++..+
T Consensus 683 i~-~~~~~~e~~~~~~~~~~~~~~~~ 707 (880)
T PRK02224 683 IG-AVENELEELEELRERREALENRV 707 (880)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23332222334555544444433
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.90 E-value=0.037 Score=56.11 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=12.6
Q ss_pred hhhhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018658 150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 150 ~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
++-...+.+....+..+.+.++.++..+..
T Consensus 799 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 828 (1179)
T TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLES 828 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.56 E-value=0.13 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=10.9
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhh
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRL 58 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rL 58 (352)
+|......++.-+..+-.+++.+...+
T Consensus 681 ~l~~~~~~l~~~l~~~~~~~~~~~~~l 707 (1179)
T TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKEL 707 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.37 Score=52.88 Aligned_cols=235 Identities=9% Similarity=0.149 Sum_probs=109.4
Q ss_pred cChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc
Q 018658 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (352)
Q Consensus 26 lDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~ 105 (352)
.+.++++|..+-.++-.+...+.+++++.+.++..-...-..-..-+...+.....++.++..+...+.+...+|...-.
T Consensus 693 ~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888777655677778888888887776665533222223333344444555555555444444444443333
Q ss_pred cHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhh--cchhhhhhHhhhhHHhHHhHHHHHhhhhhh
Q 018658 106 TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKN--SSLKEHEDRVTRLGQQLDNLQKDLQARESS 183 (352)
Q Consensus 106 stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~--~sLkEhE~rV~~lgeQLd~LqkdLqARE~S 183 (352)
.-++...+++.+.+ |...-.+.+....-....+-|+-.|..++..-. .++.+=+..+..+..+|+.+.+.+..=---
T Consensus 773 ~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e 851 (1311)
T TIGR00606 773 LLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKL 851 (1311)
T ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333 221111222222222223333333333333221 133333444444444444443333222222
Q ss_pred hHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHH
Q 018658 184 QKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263 (352)
Q Consensus 184 qkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQ 263 (352)
..++.+++-+++.-|++. -++-.++...+. .-..|+-.-.+|..+
T Consensus 852 ~e~~~~eI~~Lq~ki~el----------------------------------~~~klkl~~~l~-~r~~le~~L~el~~e 896 (1311)
T TIGR00606 852 IQDQQEQIQHLKSKTNEL----------------------------------KSEKLQIGTNLQ-RRQQFEEQLVELSTE 896 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 223333333332222211 011111222233 345566666666666
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 264 LEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (352)
Q Consensus 264 lekqrR~dQELKKrVlKLEfcLqEaRsQtrKlq 296 (352)
++.++..-++++..+--|.=-+..+.++...+.
T Consensus 897 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 666666666666666666655555555554443
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.85 Score=49.64 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHH
Q 018658 252 HWKLKTKELESQLEK 266 (352)
Q Consensus 252 HW~~KTKELEsQlek 266 (352)
-|..+.+.++.+++.
T Consensus 946 ~~~~~i~~le~~i~~ 960 (1163)
T COG1196 946 ELEREIERLEEEIEA 960 (1163)
T ss_pred HHHHHHHHHHHHHHh
Confidence 577777777777544
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.79 E-value=1.2 Score=49.11 Aligned_cols=88 Identities=11% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhch------HHHHHHHHHHHhhhhhhhhhhhc--cHHHH
Q 018658 39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNM------EDEICKLQKTLEERNGRLQASAC--TAEKY 110 (352)
Q Consensus 39 sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~M------E~Ei~kLqK~Ledk~~QL~as~~--stek~ 110 (352)
.++..+..+-.++.++...|...+..+.+-......++.-.+.| ..|+..+++.+++-...+..+.+ +.+..
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~el 827 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH
Confidence 34444555555555555555555555555444444443332222 55566666666554444443322 33444
Q ss_pred HHHhhhhhhhhhHhHh
Q 018658 111 LMQLDGLRSQLAATKA 126 (352)
Q Consensus 111 l~eLd~lRsQLs~tqa 126 (352)
-.+++.+..++..+..
T Consensus 828 e~ei~~~~~el~~l~~ 843 (1311)
T TIGR00606 828 NQEKQEKQHELDTVVS 843 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.54 E-value=1.6 Score=47.53 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=54.0
Q ss_pred hhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh
Q 018658 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA 104 (352)
Q Consensus 28 PLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~ 104 (352)
+-|..|.++-......+..+-.+++++.+.+.+-+.....-......++........++..+...+++-..++....
T Consensus 667 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 743 (1163)
T COG1196 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE 743 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999888888877777766666666655555555555555444444444433
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.50 E-value=0.62 Score=42.29 Aligned_cols=219 Identities=19% Similarity=0.316 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhh
Q 018658 82 MEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED 161 (352)
Q Consensus 82 ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~ 161 (352)
.|.||..|...+.+-..+-..-..-...+..+++++|.++... .+-=..+.-....|-+.+++-+..-.+=+.
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-------~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-------LAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 3445555554444433333333333344445555555554433 111123333444455666666655556666
Q ss_pred HhhhhHHhHHhHHHHHhhhhhh--hHhhh-HHHHHH----HHHHHHHHHHhcCcchhhHHHhhhccC---chhHHhhhhh
Q 018658 162 RVTRLGQQLDNLQKDLQARESS--QKQLK-DEVFRI----EQDIMQTIAKAGVNKDCELRKLLDEVS---PKNFERINKL 231 (352)
Q Consensus 162 rV~~lgeQLd~LqkdLqARE~S--qkQLK-DeVlRI----E~dIm~A~akag~~~~~El~kil~evs---pknfe~in~l 231 (352)
++..|.++|+-+.+.++. |.. +.|+. .-...+ ..|+..|+......-+..+.+.-.++. ..-++.++.-
T Consensus 125 ~i~~L~eEl~fl~~~hee-Ei~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~ 203 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEE-EIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQ 203 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh-hhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccc
Confidence 666666666666555543 111 01111 000000 122222222222221222222221111 1123333333
Q ss_pred hhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 018658 232 LVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRD 311 (352)
Q Consensus 232 L~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrd 311 (352)
......++..++.||+-+...| ..|+.+++..+..-..|.++|--||..++.-+ ..++..-...+..|.+++.
T Consensus 204 ~~~~~~~~~~~~~E~~~~r~~~----~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~---~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 204 SEKSSEELESAKEELKELRRQI----QSLQAELESLRAKNASLERQLRELEQRLDEER---EEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHHHHHhhh----hHhhhhhhccccchhhhhhhHHHHHHHHHHHH---HHHHHhhhccchhHHHHHH
Confidence 3444555666666665444333 45555555555556666666666666555433 2333333344444555555
Q ss_pred HHHh
Q 018658 312 QLAA 315 (352)
Q Consensus 312 q~a~ 315 (352)
+++.
T Consensus 277 ~~~~ 280 (312)
T PF00038_consen 277 EMAR 280 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.20 E-value=0.94 Score=41.15 Aligned_cols=224 Identities=20% Similarity=0.321 Sum_probs=135.0
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhhhhhc-cHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcc
Q 018658 77 MKAKNMEDEICKLQKTLEERNGRLQASAC-TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSS 155 (352)
Q Consensus 77 ~kak~ME~Ei~kLqK~Ledk~~QL~as~~-stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~s 155 (352)
.|++.+|.+=..|...+..--+.-....+ ....|-.||.++|.+|..+.... .-.++++-.+-.++++=..-
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~ek-------a~l~~e~~~l~~e~~~~r~k 90 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEK-------ARLELEIDNLKEELEDLRRK 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHh-------hHHhhhhhhHHHHHHHHHHH
Confidence 46777777777776665544443322222 45569999999999987553322 33456666666666664444
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhcc----Cc-----hhHH
Q 018658 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEV----SP-----KNFE 226 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~ev----sp-----knfe 226 (352)
+.+=-.....+..++..|.+++..-....-.|..++-....+|- + ....-+-|+..+-..+ +. ...+
T Consensus 91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~--f--l~~~heeEi~~L~~~~~~~~~~e~~~~~~~d 166 (312)
T PF00038_consen 91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE--F--LKQNHEEEIEELREQIQSSVTVEVDQFRSSD 166 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHTTSTT----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH--H--HHhhhhhhhhhhhhccccccceeeccccccc
Confidence 44334445667778888888888777777777777666666552 1 1111222222222111 11 1111
Q ss_pred hhhhhhh-cc---hhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018658 227 RINKLLV-VK---DEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERR 302 (352)
Q Consensus 227 ~in~lL~-~k---D~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErR 302 (352)
|+..|. +. |..+.+-+.+ +.++|+.+..++..+..+...+-..+|--+..+--.+|..+.++..|+.....=
T Consensus 167 -L~~~L~eiR~~ye~~~~~~~~e---~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 167 -LSAALREIRAQYEEIAQKNREE---LEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhhhhhHHHHHHHHHhhhhhh---hhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence 222221 21 3344455555 568899999999999999998888888888899999999999988888766555
Q ss_pred hHHHHHHHHHHHh
Q 018658 303 DKAIKELRDQLAA 315 (352)
Q Consensus 303 DkalKElrdq~a~ 315 (352)
...|.++..++..
T Consensus 243 e~~l~~le~~~~~ 255 (312)
T PF00038_consen 243 ERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 5556666555443
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=95.91 E-value=2.5 Score=43.65 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 018658 45 VSLAAELKEVRTRLASQEQ 63 (352)
Q Consensus 45 vslAaELK~~R~rLasQEq 63 (352)
-.+..+++....++...+.
T Consensus 254 ~~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 254 ETLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 12
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.84 E-value=2.6 Score=43.12 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=55.4
Q ss_pred cChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc
Q 018658 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (352)
Q Consensus 26 lDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~ 105 (352)
+..-++++..+...+......+-++++++..++..-++.|..+.-.+ ++. -..+|.++..+...+.+...+++--++
T Consensus 214 le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~--~~~-r~~Le~ei~~le~e~~e~~~~l~~l~~ 290 (650)
T TIGR03185 214 LEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDL--FEE-REQLERQLKEIEAARKANRAQLRELAA 290 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555556666666677777777777777777666666654432 111 235667777777777777777664443
Q ss_pred cHH--HHH-HHhhhhhhhhhHhH
Q 018658 106 TAE--KYL-MQLDGLRSQLAATK 125 (352)
Q Consensus 106 ste--k~l-~eLd~lRsQLs~tq 125 (352)
+.= -|+ +-++.++.|+..-+
T Consensus 291 ~~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 291 DPLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred ccCCHhhhHHHHHHHHHHHHHHH
Confidence 221 122 44555555555443
No 13
>PRK11637 AmiB activator; Provisional
Probab=95.49 E-value=2.6 Score=40.79 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=33.8
Q ss_pred hhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHh
Q 018658 149 LDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFER 227 (352)
Q Consensus 149 L~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~ 227 (352)
+++....+.+-+..+..+..+++.+++++..+.-- =...+.+..+.|.. + -|.=|++.-||..|.+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~-----------l~~rlra~Y~~g~~-~-~l~vLl~a~~~~~~~r 156 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL-----------LAAQLDAAFRQGEH-T-GLQLILSGEESQRGER 156 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHcCCC-c-HHHHHhcCCChhHHHH
Confidence 34444444444455555555555555555443322 12336666777642 2 3555677777766664
No 14
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.47 E-value=0.09 Score=50.57 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=60.6
Q ss_pred ccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 018658 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (352)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~a 102 (352)
.+++=+-|+++-| .||+.+|+-| -|-.=++.|.-|=..+- .+.-.||+.+..+++.+.+|...+..
T Consensus 79 ~r~lk~~l~evEe---kyrkAMv~na-QLDNek~~l~yqvd~Lk----------d~lee~eE~~~~~~re~~eK~~elEr 144 (302)
T PF09738_consen 79 LRDLKDSLAEVEE---KYRKAMVSNA-QLDNEKSALMYQVDLLK----------DKLEELEETLAQLQREYREKIRELER 144 (302)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHh-hhchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 4999999876 36666666655544443 23446899999999999999888877
Q ss_pred hhccHHHHHHHhhhhhhhhh
Q 018658 103 SACTAEKYLMQLDGLRSQLA 122 (352)
Q Consensus 103 s~~stek~l~eLd~lRsQLs 122 (352)
---.....-.|++.||.+|.
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666667788888888886
No 15
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.41 E-value=3.7 Score=42.01 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=49.4
Q ss_pred cChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc
Q 018658 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC 105 (352)
Q Consensus 26 lDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~ 105 (352)
+|-|-.||..-....++++. ..++-.++..-|.-+..-.......+.....++.++..+++.+++-...++....
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~-----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL-----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466777664444444331 2233333333333333323333445556667777777777777777776666544
Q ss_pred cHHHHHHHhhhhhhhhhHhHhh
Q 018658 106 TAEKYLMQLDGLRSQLAATKAT 127 (352)
Q Consensus 106 stek~l~eLd~lRsQLs~tqaT 127 (352)
.+..+.+.|..++....+.
T Consensus 259 ---~~~~~r~~Le~ei~~le~e 277 (650)
T TIGR03185 259 ---DLFEEREQLERQLKEIEAA 277 (650)
T ss_pred ---hHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544443
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.73 E-value=6.5 Score=41.27 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=29.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 247 KIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (352)
Q Consensus 247 rimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqr 297 (352)
+-..+||..=--.|.-..+..++--++|+.++..+|=++||-|.+--||+.
T Consensus 349 ke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ 399 (546)
T PF07888_consen 349 KEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEK 399 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455543333455555555666666666666666666666666666553
No 17
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.62 E-value=6.9 Score=41.08 Aligned_cols=214 Identities=20% Similarity=0.242 Sum_probs=125.9
Q ss_pred CCCCccccChhhh---hhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHH---
Q 018658 19 SSVPAREIDPLLK---DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKT--- 92 (352)
Q Consensus 19 ss~~~~elDPLLk---DL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~--- 92 (352)
..++..|+--+.+ +-.-.+-.|..++.-|-.|++++|.++...++.....=..-...+.+.-+.|.|++-+...
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~ 166 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA 166 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 3455555554444 4444688899999999999999999999998877644444455666677777777766543
Q ss_pred HhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHh
Q 018658 93 LEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDN 172 (352)
Q Consensus 93 Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~ 172 (352)
|++...-| ..|.+.|+.+|..++.--++--..-.-.|.+|-.|+.+|+-.. ..|+-.++.+ ...
T Consensus 167 le~e~~~L----------k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~---~~h~~eI~e~---~~~ 230 (546)
T KOG0977|consen 167 LEDELKRL----------KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK---RIHKQEIEEE---RRK 230 (546)
T ss_pred HHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---hccHHHHHHH---HHH
Confidence 33333333 3456666666666666555555566677888999998887543 3566554432 333
Q ss_pred HHHHH--hhhhhhhHhhhHHH--HHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHH
Q 018658 173 LQKDL--QARESSQKQLKDEV--FRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKI 248 (352)
Q Consensus 173 LqkdL--qARE~SqkQLKDeV--lRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeiri 248 (352)
.+.|. ..|++=..+|.+=+ +|-+.|. +..- =++=+....++-+.+|+.--+-.-.++...|+|++.
T Consensus 231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~---~~~~-------nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~ 300 (546)
T KOG0977|consen 231 ARRDTTADNREYFKNELALAIREIRAQYEA---ISRQ-------NRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR 300 (546)
T ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHH---HHHH-------hHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 44444 44443333332222 1112221 1111 122334445566666766666666677778888766
Q ss_pred H-hhhhhhhhH
Q 018658 249 M-SAHWKLKTK 258 (352)
Q Consensus 249 m-SaHW~~KTK 258 (352)
| +.-|.++.|
T Consensus 301 ~R~~i~~Lr~k 311 (546)
T KOG0977|consen 301 IRSRISGLRAK 311 (546)
T ss_pred HHhcccchhhh
Confidence 5 344555544
No 18
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.63 E-value=17 Score=41.82 Aligned_cols=203 Identities=25% Similarity=0.311 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHh-----hhHHHHHHhh-------hchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHh
Q 018658 47 LAAELKEVRTRLASQEQCFVKET-----LTRQEAEMKA-------KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQL 114 (352)
Q Consensus 47 lAaELK~~R~rLasQEq~~~kEt-----~tRk~AE~ka-------k~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eL 114 (352)
+.+||.++..++.+++..+-++- ..-++++.++ +.++.++..+++.|++--.-.....- -...+
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~----~~~kv 541 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAAD----SLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhH
Confidence 78899999999999888887511 1113344444 34444444444444433111111111 12334
Q ss_pred hhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHH---H
Q 018658 115 DGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE---V 191 (352)
Q Consensus 115 d~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDe---V 191 (352)
..+|-+|..+.. ++.|.++... .|....+++...-.++.+ .+..+++-+..|+.+...-.=-.++++.+ .
T Consensus 542 ~~~rk~le~~~~--d~~~e~~~~~--kl~~~~~e~~~~iq~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~ 614 (1317)
T KOG0612|consen 542 NSLRKQLEEAEL--DMRAESEDAG--KLRKHSKELSKQIQQELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKE 614 (1317)
T ss_pred HHHHHHHHHhhh--hhhhhHHHHh--hHhhhhhhhhHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544332 2333333222 233333333333333332 55666666666666544433334444444 2
Q ss_pred HHHHHHHHHHHHHhc----------CcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHH
Q 018658 192 FRIEQDIMQTIAKAG----------VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (352)
Q Consensus 192 lRIE~dIm~A~akag----------~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELE 261 (352)
.+-.++|-+.++-+. ....++++|+.+ .---|-|. |.-.-.+ =+-+||..+-|.++
T Consensus 615 ~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~-----------~~~~ek~--~~e~~~e~~lk~~q 680 (1317)
T KOG0612|consen 615 RRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQER-----------ISDSEKE--ALEIKLERKLKMLQ 680 (1317)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH-----------HHHHHHH--HHHHHHHHHHHHHH
Confidence 333333333332221 133444444433 22222222 2222222 57788999998888
Q ss_pred HHHHHhHhhHHHH
Q 018658 262 SQLEKQRRADQEL 274 (352)
Q Consensus 262 sQlekqrR~dQEL 274 (352)
.+++.-+-.-+.+
T Consensus 681 ~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 681 NELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 8887654444433
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.21 E-value=13 Score=39.20 Aligned_cols=61 Identities=31% Similarity=0.485 Sum_probs=32.2
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhhhHH---HHHHHHHhHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLKTKE---LESQLEKQRRADQ----ELKKRVLKLEFCLQEARAQTRKLQRMGE 300 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~KTKE---LEsQlekqrR~dQ----ELKKrVlKLEfcLqEaRsQtrKlqrmgE 300 (352)
.+.-++|.+|..|+.-+--|..-+-+| |+.||-+.+...+ |.++. |+|-++.+|-+|+=.|
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~re-------l~Elks~lrv~qkEKE 434 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRE-------LQELKSSLRVAQKEKE 434 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334467888888877666655433332 4455544332221 22222 4566676676666543
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.97 E-value=12 Score=38.14 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=88.7
Q ss_pred HhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc----------cHHHHHHHhhhhhhhhhHhH
Q 018658 56 TRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASAC----------TAEKYLMQLDGLRSQLAATK 125 (352)
Q Consensus 56 ~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~----------stek~l~eLd~lRsQLs~tq 125 (352)
.++..---.|.+|-.+++.++.....+++-+..+.+....-...+.--.- ...++-.+|..+..++....
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445688899999999888888888887776654433333322222 24456666777777666444
Q ss_pred hhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHh-hhhhhhHhhhHHHH------------
Q 018658 126 ATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ-ARESSQKQLKDEVF------------ 192 (352)
Q Consensus 126 aTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLq-ARE~SqkQLKDeVl------------ 192 (352)
......+.+-...+-.+-.+.++|++=. .....+-+.++.|.++-. ||+- ...++..+-
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie-------~eq~ei~e~l~~Lrk~E~eAr~k-L~~~~~~L~~ikr~l~k~~lp 440 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIE-------KEQEKLSEMLQGLRKDELEAREK-LERYRNKLHEIKRYLEKSNLP 440 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 4333333333334444444444333322 222222222222222211 1111 111111111
Q ss_pred HHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhH
Q 018658 193 RIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDE 245 (352)
Q Consensus 193 RIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrde 245 (352)
.|..+.++.+..+ ...-..|.+-|+. .|=|.+.|++.+..-.+.+..|.++
T Consensus 441 gip~~y~~~~~~~-~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q 491 (569)
T PRK04778 441 GLPEDYLEMFFEV-SDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEE 491 (569)
T ss_pred CCcHHHHHHHHHH-HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555433 3344456666777 7777777776665555555555443
No 21
>PRK09039 hypothetical protein; Validated
Probab=92.69 E-value=10 Score=36.70 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 018658 257 TKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAK 316 (352)
Q Consensus 257 TKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~K 316 (352)
--.||++|+-....+.+.+.++-.|+=-|+.+-++ |-+.+..-|+.....|++-+...
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~~~~~~~~~l~~~~~~~ 210 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNRYRSEFFGRLREILGDR 210 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHhCCC
Confidence 45678888888888888888888888777777666 33444445666777777666554
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.58 E-value=9.9 Score=40.55 Aligned_cols=68 Identities=25% Similarity=0.404 Sum_probs=37.5
Q ss_pred HhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHH----------------------HhhhchHHHHHHHHHHHh
Q 018658 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAE----------------------MKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 37 K~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE----------------------~kak~ME~Ei~kLqK~Le 94 (352)
++.=|.+..+|---|++-|..-++-|..+..|--.|+.+| .|.+.||.|+.+|+..|.
T Consensus 483 Rq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666655555555555555555555554444322 244556666666666666
Q ss_pred hhhhhhhhhh
Q 018658 95 ERNGRLQASA 104 (352)
Q Consensus 95 dk~~QL~as~ 104 (352)
.+.+|++.--
T Consensus 563 ~kee~~~~~e 572 (697)
T PF09726_consen 563 QKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.44 E-value=19 Score=39.18 Aligned_cols=99 Identities=26% Similarity=0.367 Sum_probs=63.1
Q ss_pred chhHHhhhhhhhcchhHhhhh-------hhHHHHHhhhhhhh---hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 018658 222 PKNFERINKLLVVKDEEIHKL-------KDEIKIMSAHWKLK---TKELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 222 pknfe~in~lL~~kD~eIakL-------rdeirimSaHW~~K---TKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQ 291 (352)
|-+-+.+..++..||..|+.| .+||.-|-.+-..= --.+.++++-++-..--+|-++=.++.=|...-+.
T Consensus 223 ~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E 302 (775)
T PF10174_consen 223 DAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSE 302 (775)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777788888777775 77777764433222 23456778888877777888887777777777666
Q ss_pred HHHHHHhhhhhhH-------HHHHHHHHHHhhhhcc
Q 018658 292 TRKLQRMGERRDK-------AIKELRDQLAAKQQDA 320 (352)
Q Consensus 292 trKlqrmgErRDk-------alKElrdq~a~KQ~~~ 320 (352)
+-.+|---+-... =|.-|++++.+|++..
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~ 338 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA 338 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555532221111 1566788888888754
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.09 E-value=32 Score=41.06 Aligned_cols=179 Identities=27% Similarity=0.321 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhh
Q 018658 81 NMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE 160 (352)
Q Consensus 81 ~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE 160 (352)
..|-|...+...+...+.|.-++...--+.-.+|-.|.+.|.-++--..++-.=++-|+.+|.-+..+|+.. ++|-
T Consensus 1692 ~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~E----q~~~ 1767 (1930)
T KOG0161|consen 1692 QAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKE----QETS 1767 (1930)
T ss_pred hhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHH----HHHH
Confidence 444455555555555444443333333334577777888887777777777777888888888888887764 3455
Q ss_pred hHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhh
Q 018658 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIH 240 (352)
Q Consensus 161 ~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIa 240 (352)
.++.+.-.+|...-|||+.|=-- +++-+..|..
T Consensus 1768 ~~le~~k~~LE~~~kdLq~rL~e---------------~E~~a~~~~k-------------------------------- 1800 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQVKDLQLRLDE---------------AEQAALKGGK-------------------------------- 1800 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhhccH--------------------------------
Confidence 55555555666666666554111 1122222211
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhH---HHHHHHHHH
Q 018658 241 KLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGER----RDK---AIKELRDQL 313 (352)
Q Consensus 241 kLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgEr----RDk---alKElrdq~ 313 (352)
-..+-|.-|-.+||++|+---|-.+|=-|-+-+.|=++.|---|+-.-.+..++ .|| .++-++.|+
T Consensus 1801 -------~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQl 1873 (1930)
T KOG0161|consen 1801 -------KQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQL 1873 (1930)
T ss_pred -------HHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 123456677779999999888888887777778877777776665443333332 333 366666666
Q ss_pred Hhhh
Q 018658 314 AAKQ 317 (352)
Q Consensus 314 a~KQ 317 (352)
....
T Consensus 1874 eeaE 1877 (1930)
T KOG0161|consen 1874 EEAE 1877 (1930)
T ss_pred HHHH
Confidence 5443
No 25
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=91.28 E-value=3.1 Score=37.96 Aligned_cols=94 Identities=28% Similarity=0.402 Sum_probs=74.6
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhccHH-------HHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhh
Q 018658 79 AKNMEDEICKLQKTLEERNGRLQASACTAE-------KYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE 151 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL~as~~ste-------k~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~e 151 (352)
...+|.||+..+.-+++-..+|..+-+... +-..++..|+.-|..++.+.+..-..+..+| .+|.+
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ-------~el~e 141 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQ-------QELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 346788888888888888888877655443 3556777777777777777776666666665 57899
Q ss_pred hhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018658 152 KNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 152 K~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
|+..|..=..||..|..||.....|++.
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 26
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.86 E-value=20 Score=36.46 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHh
Q 018658 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (352)
Q Consensus 45 vslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~t 124 (352)
+.+..++.+.+.++..=...... ..=..|+.+...+++.|..|...|+.-..--........++-..|+.++.+...+
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l 329 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL 329 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45667777777776553322221 1225677777788888887777766544332222222222333333333333333
Q ss_pred HhhhHhhHHh----------HHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHH
Q 018658 125 KATADASAAS----------AQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRI 194 (352)
Q Consensus 125 qaTAeaSA~S----------AqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRI 194 (352)
..--+--..| ....+=+.-.+-+.+.+-...+.++......+-++++.+.+.+..=+-.+..+++.+-.+
T Consensus 330 ~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 330 KEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred HHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222 444455555556665555566666777777777788888888888888899999999999
Q ss_pred HHHHHHHHHHhcC--cchhhHHHhhhcc-CchhHHhhhhhhhcchhHhhhhhhHHHHHhhhh---hhhhHHHHHHHHHhH
Q 018658 195 EQDIMQTIAKAGV--NKDCELRKLLDEV-SPKNFERINKLLVVKDEEIHKLKDEIKIMSAHW---KLKTKELESQLEKQR 268 (352)
Q Consensus 195 E~dIm~A~akag~--~~~~El~kil~ev-spknfe~in~lL~~kD~eIakLrdeirimSaHW---~~KTKELEsQlekqr 268 (352)
..+..+|-.+... .+-.++...+... -|.--+.+-..+..-.++|.+|..+|.=-.-+= ..--.+.+..++.-.
T Consensus 410 rk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~ 489 (569)
T PRK04778 410 RKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE 489 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999988776542 2222333222221 233333333444455677777777654310000 012234444555555
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018658 269 RADQELKKRVLKLEFCLQE 287 (352)
Q Consensus 269 R~dQELKKrVlKLEfcLqE 287 (352)
....+|-.-+..+|-.+|.
T Consensus 490 ~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 490 EETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777
No 27
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.43 E-value=0.08 Score=56.28 Aligned_cols=161 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHH
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYL 111 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l 111 (352)
++..+..++.+...-|..|+-|+..-|..+.... -..|+|.+.++.++..++..+.+-...+-++......|-
T Consensus 339 ~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~-------~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 339 EANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA-------AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444455555555555555555444332221 234555555666665555555554444444444444455
Q ss_pred HHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHH
Q 018658 112 MQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEV 191 (352)
Q Consensus 112 ~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeV 191 (352)
.++..|+.++.-.....+..--.-+..+-.--.|...+++-+.++.+-+-...+|..+++.++.-|.-=+-.....-+-+
T Consensus 412 te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~ 491 (859)
T PF01576_consen 412 TELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKK 491 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444333332222222222222334444444455555555555555555555555555455444455556
Q ss_pred HHHHHHHH
Q 018658 192 FRIEQDIM 199 (352)
Q Consensus 192 lRIE~dIm 199 (352)
+|++.++-
T Consensus 492 lRl~~el~ 499 (859)
T PF01576_consen 492 LRLQVELQ 499 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 67666663
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.05 E-value=0.09 Score=55.91 Aligned_cols=223 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHH
Q 018658 65 FVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLA 144 (352)
Q Consensus 65 ~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~ 144 (352)
+-..+.++..+|.+.|.+|.++..|+..+++-+.++........++-.|+++|..+|.-...+.....-.-.+...|.-.
T Consensus 168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee 247 (859)
T PF01576_consen 168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE 247 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778889999999999999999999999999999999999999999999999987766554444333344445455
Q ss_pred HhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchh
Q 018658 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKN 224 (352)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspkn 224 (352)
+-..|++-+..-..=...+..+-+.++.|...+..=.-+-..|...+-+...+|.++-.+....... ... .
T Consensus 248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~----~~E-----e 318 (859)
T PF01576_consen 248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ----RTE-----E 318 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh----hHH-----H
Confidence 5555555444333333334444444444444333222222223333334444444433333211100 000 0
Q ss_pred HHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhh-------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 225 FERINKLLVVKDEEIHKLKDEIKIMSAHWKLKT-------KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (352)
Q Consensus 225 fe~in~lL~~kD~eIakLrdeirimSaHW~~KT-------KELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlq 296 (352)
+|..-+=|..+=.+...--++..--.+-|+-.- -.+-.+|++++....+|-|+.-+++=+|.+.++....++
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~ 397 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ 397 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 111111111100000000111111112222211 123456777888888888888888888888777766554
No 29
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.69 E-value=28 Score=36.62 Aligned_cols=148 Identities=16% Similarity=0.308 Sum_probs=74.5
Q ss_pred hcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhh
Q 018658 153 NSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLL 232 (352)
Q Consensus 153 ~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL 232 (352)
...|.+=...|+.|..++..+..++..-..+-+|+.+|+.+.+....+--.... ..--+.. |=.-+|.|+++++.++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~--l~~k~~~-lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK--LKKKTVE-LLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HhcCcHHHHHHHHHHH
Confidence 334444445566666666666666666666666666666555544432211111 0011111 2334678999998888
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRA----DQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKE 308 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~----dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKE 308 (352)
...-.-+.. |..-|.-.-+.|...++..+-. ..|.++++ -.+++.|.+++.+.---..++..+++
T Consensus 404 ~~s~~rl~~-------L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~----~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 404 EASEQRLVE-------LAQQWEKHRAPLIEEYRRLKEKASNRESESKQKL----QEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766544443 3445665555555544444322 12222222 23455555555554444444555555
Q ss_pred HHHHHH
Q 018658 309 LRDQLA 314 (352)
Q Consensus 309 lrdq~a 314 (352)
|...+.
T Consensus 473 L~~e~e 478 (594)
T PF05667_consen 473 LVKELE 478 (594)
T ss_pred HHHHHH
Confidence 555444
No 30
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.61 E-value=4.8 Score=38.85 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=11.2
Q ss_pred hhhhHHhHHhHHHHH
Q 018658 163 VTRLGQQLDNLQKDL 177 (352)
Q Consensus 163 V~~lgeQLd~LqkdL 177 (352)
|++|..+++.||+-+
T Consensus 273 i~~Lk~~~~~Le~l~ 287 (312)
T smart00787 273 IEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677888888887754
No 31
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.52 E-value=33 Score=36.71 Aligned_cols=57 Identities=25% Similarity=0.442 Sum_probs=44.1
Q ss_pred HhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHH
Q 018658 145 LVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (352)
Q Consensus 145 L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A 201 (352)
+.+.+.....-+.+-..++..+.++++.+.+.+.-=+-...++++.+.-++..|...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777788888999999999877777777778888899999998883
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.26 E-value=41 Score=37.45 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=115.6
Q ss_pred hhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhh
Q 018658 103 SACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARES 182 (352)
Q Consensus 103 s~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~ 182 (352)
++.-++.+..+++.+...+..++.+.......-..++-++-.+-++-+.....|..-+.++..+-+|++.|+.-|....=
T Consensus 460 ~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 460 NPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 44445556677777777777766666666655566666666666666666777777777888888888888888876666
Q ss_pred hhH-hhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhH---------------HhhhhhhhcchhHhhhhhhHH
Q 018658 183 SQK-QLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNF---------------ERINKLLVVKDEEIHKLKDEI 246 (352)
Q Consensus 183 Sqk-QLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknf---------------e~in~lL~~kD~eIakLrdei 246 (352)
|.- -|+.++---|..| |.-.|.||+.= .|..|.=. .+|..==-+-+++ .|+.++
T Consensus 540 SL~~fL~~~~p~We~tI-------GKVid~eLL~r-~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee--~L~~~l 609 (1201)
T PF12128_consen 540 SLLEFLRKNKPGWEQTI-------GKVIDEELLYR-TDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEE--ELRERL 609 (1201)
T ss_pred cHHHHHHhCCCcHHHHh-------HhhCCHHHhcC-CCCCCeecCCCcccccceeEeehhhcCCchhhcChH--HHHHHH
Confidence 644 3455565666665 44456665321 34444322 2222100011222 444444
Q ss_pred HHHhhh---hhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 247 KIMSAH---WKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQ 296 (352)
Q Consensus 247 rimSaH---W~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlq 296 (352)
.-+... =..+-+++|.+|.+....-.++++.+-..+.+++-++..+..|+
T Consensus 610 ~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 610 EQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 422221 13445889999999999999999999999999988887666554
No 33
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=88.72 E-value=4.8 Score=40.75 Aligned_cols=203 Identities=23% Similarity=0.322 Sum_probs=53.3
Q ss_pred hhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhh---hh---hhhh
Q 018658 31 KDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG---RL---QASA 104 (352)
Q Consensus 31 kDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~---QL---~as~ 104 (352)
.+|++-|..+-..+.+|..+++++++.|..|.....+.--.+ ..++..--...----. +. -++.
T Consensus 74 ~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 143 (424)
T PF03915_consen 74 EPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKER----------QQSAAKPVARPAAAPPPSSAPSSSSSPQ 143 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhcccccccccCCCCCcccccccCcC
Confidence 346777888888999999999999999998877663221111 1111100000000000 00 0000
Q ss_pred ccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhh-------------hhcchhhhhhHhhhhHHhHH
Q 018658 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-------------KNSSLKEHEDRVTRLGQQLD 171 (352)
Q Consensus 105 ~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~e-------------K~~sLkEhE~rV~~lgeQLd 171 (352)
.+......|+.+||.+|++.+.+-.+.........--|..-++.+.. =+++-++......+|-.++|
T Consensus 144 ~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVd 223 (424)
T PF03915_consen 144 STSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVD 223 (424)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111478999999999999888777766666655555444433222 01122333344444444444
Q ss_pred hHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhh
Q 018658 172 NLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSA 251 (352)
Q Consensus 172 ~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSa 251 (352)
.||--.+ +||..|. .-| --++|+.++.+.+.+.-=..++.++.+-|..+-+
T Consensus 224 DLQD~VE-------~LRkDV~-----------~Rg-----------vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp 274 (424)
T PF03915_consen 224 DLQDLVE-------DLRKDVV-----------QRG-----------VRPSPKQLETVAKDISRASKELKKMKEYIKTEKP 274 (424)
T ss_dssp HHHHHHH-------HHHHHHH-----------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHH-----------HcC-----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 4443322 1222211 111 1367899999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhHhhHHHHH
Q 018658 252 HWKLKTKELESQLEKQRRADQELK 275 (352)
Q Consensus 252 HW~~KTKELEsQlekqrR~dQELK 275 (352)
+|+ |-.|+.|++=-+-.|.|+
T Consensus 275 ~Wk---KiWE~EL~~V~eEQqfL~ 295 (424)
T PF03915_consen 275 IWK---KIWESELQKVCEEQQFLK 295 (424)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHH
Confidence 996 556666666555544443
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.56 E-value=31 Score=35.30 Aligned_cols=213 Identities=20% Similarity=0.299 Sum_probs=120.1
Q ss_pred ccChhhhhhHHHHhHHHHhHHHH-----HHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhh---h
Q 018658 25 EIDPLLKDLNEKKQSFRKNVVSL-----AAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE---R 96 (352)
Q Consensus 25 elDPLLkDL~EKK~sfRrNVvsl-----AaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Led---k 96 (352)
+++.-+.++.++-.....++..| ...+.+.-.++-.==..|.+|-.+|+..+.....+.+-|..+.+.-.. .
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777766666665544 233444444455555678899999998888888877777666543322 2
Q ss_pred hhhhhhhhc-------cHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHh
Q 018658 97 NGRLQASAC-------TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQ 169 (352)
Q Consensus 97 ~~QL~as~~-------stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQ 169 (352)
-..+.-|-. ....|-.+|..|..+..... ..-..-+.--+.+...+.+-...|.+.+.....+.+.
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~-------~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE-------ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 12223334444444433322 2222223334456666777777888888888888888
Q ss_pred HHhHHHHHh-hhhhhhHhhhHHHHHHHHHHHHHHHHhc-CcchhhHH-----------Hhhhcc--CchhHHhhhhhhhc
Q 018658 170 LDNLQKDLQ-ARESSQKQLKDEVFRIEQDIMQTIAKAG-VNKDCELR-----------KLLDEV--SPKNFERINKLLVV 234 (352)
Q Consensus 170 Ld~LqkdLq-ARE~SqkQLKDeVlRIE~dIm~A~akag-~~~~~El~-----------kil~ev--spknfe~in~lL~~ 234 (352)
|+.|.++-. ||+ .-..|+-.+.- |-.-+.+.+ .|...+.. .+-++. .|=|.+.||+.|..
T Consensus 402 l~~L~~dE~~Ar~-~l~~~~~~l~~----ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~ 476 (560)
T PF06160_consen 402 LQSLRKDEKEARE-KLQKLKQKLRE----IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEE 476 (560)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 888887643 333 23334433332 223334443 23333322 222222 47889999999888
Q ss_pred chhHhhhhhhHHHHH
Q 018658 235 KDEEIHKLKDEIKIM 249 (352)
Q Consensus 235 kD~eIakLrdeirim 249 (352)
--+.|.+|.++..-|
T Consensus 477 a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 477 AEDDVETLEEKTEEL 491 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888766543
No 35
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.01 E-value=32 Score=34.76 Aligned_cols=148 Identities=26% Similarity=0.300 Sum_probs=78.9
Q ss_pred HhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHH--HhcCcchhhHHHhhhccCc-hh---HHhhhhhhhcc
Q 018658 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA--KAGVNKDCELRKLLDEVSP-KN---FERINKLLVVK 235 (352)
Q Consensus 162 rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~a--kag~~~~~El~kil~evsp-kn---fe~in~lL~~k 235 (352)
....+.++++.++..++.-+....|.|--..+|=.+-=.-|+ |.|.+. +..++ .| .+.+-.-...=
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--------~~~~~~~~~~el~~l~~E~~~~ 286 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--------EGFDSSTNSIELEELKQERDHL 286 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--------cccccccchhcchhhHHHHHHH
Confidence 445566777777777777777777777555554433222221 111111 00110 00 22233333334
Q ss_pred hhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHH----------HHHHHHHHHHHHHHHH----HHHhhhh
Q 018658 236 DEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRV----------LKLEFCLQEARAQTRK----LQRMGER 301 (352)
Q Consensus 236 D~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrV----------lKLEfcLqEaRsQtrK----lqrmgEr 301 (352)
-+||..|+..|..+-+.|...--+++.+-+..|.-.+++.... --+-+|++..+....+ ++.--.-
T Consensus 287 ~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ 366 (511)
T PF09787_consen 287 QEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKE 366 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 4788888888888888886666666554444443333332221 1234566555544333 3333334
Q ss_pred hhHHHHHHHHHHHhhh
Q 018658 302 RDKAIKELRDQLAAKQ 317 (352)
Q Consensus 302 RDkalKElrdq~a~KQ 317 (352)
|+.-|..|+.+++++.
T Consensus 367 ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 367 KESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5667889999999877
No 36
>PF15294 Leu_zip: Leucine zipper
Probab=88.00 E-value=6.7 Score=38.09 Aligned_cols=85 Identities=24% Similarity=0.443 Sum_probs=60.3
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcc
Q 018658 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVK 235 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~k 235 (352)
+.+=|..|..+. +.+.+-++..+.+++-|++.|...=|++...=.. ..-...||-+-+.+ ...|-||-.+|.-|
T Consensus 192 l~dLE~k~a~lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aekeLekKfqq--T~ay~NMk~~ltkK 265 (278)
T PF15294_consen 192 LSDLENKMAALK---SELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKELEKKFQQ--TAAYRNMKEILTKK 265 (278)
T ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhhHHHHhCc--cHHHHHhHHHHHhc
Confidence 333344444443 3445666777778888888887777776544333 45567788888864 67899999999999
Q ss_pred hhHhhhhhhHH
Q 018658 236 DEEIHKLKDEI 246 (352)
Q Consensus 236 D~eIakLrdei 246 (352)
.++|.-||..+
T Consensus 266 n~QiKeLRkrl 276 (278)
T PF15294_consen 266 NEQIKELRKRL 276 (278)
T ss_pred cHHHHHHHHHh
Confidence 99999999875
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.86 E-value=47 Score=37.91 Aligned_cols=78 Identities=32% Similarity=0.437 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhh
Q 018658 85 EICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (352)
Q Consensus 85 Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (352)
++.|++|.||.++-.+.--....|+.-.++|.+-++++.-|---||+-. .-..+.+|-+||--| |+||.
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG--------AE~MV~qLtdknlnl---EekVk 465 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG--------AEEMVEQLTDKNLNL---EEKVK 465 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHhhccCH---HHHHH
Confidence 4567788888888777777777888778888887777777766665421 123445566666544 67787
Q ss_pred hhHHhHHhH
Q 018658 165 RLGQQLDNL 173 (352)
Q Consensus 165 ~lgeQLd~L 173 (352)
-|.|-.+.|
T Consensus 466 lLeetv~dl 474 (1243)
T KOG0971|consen 466 LLEETVGDL 474 (1243)
T ss_pred HHHHHHHHH
Confidence 777666543
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.67 E-value=44 Score=35.89 Aligned_cols=217 Identities=27% Similarity=0.360 Sum_probs=117.7
Q ss_pred hHHHHhHHHHHHHHHHHHH---hhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhh---hhhhccHHHHH
Q 018658 38 QSFRKNVVSLAAELKEVRT---RLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRL---QASACTAEKYL 111 (352)
Q Consensus 38 ~sfRrNVvslAaELK~~R~---rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL---~as~~stek~l 111 (352)
..+.++|-.|=+||...|. .|-+|-..+.. +...+-.-...|-.|...||.++..-+-+. +.+..+.|+=|
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~---~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTN---NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999876653 34444222211 111122222233333345555444433332 34556777766
Q ss_pred HHhhhhhh----hhhHhHhh---hHhhHH----hHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhh
Q 018658 112 MQLDGLRS----QLAATKAT---ADASAA----SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (352)
Q Consensus 112 ~eLd~lRs----QLs~tqaT---AeaSA~----SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqAR 180 (352)
.|.-+.|. ||..-+.. ++..|+ .|++..--|-. ++ ..|...|...++.|+.+|..+
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e----------~~---r~r~~~lE~E~~~lr~elk~k 564 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE----------SC---RQRRRQLESELKKLRRELKQK 564 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH----------HH---HHHHHHHHHHHHHHHHHHHHH
Confidence 66555553 44332211 111111 11111112222 22 235677888899999999888
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHH
Q 018658 181 ESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKEL 260 (352)
Q Consensus 181 E~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKEL 260 (352)
|--...+..|+ -|+++.-.| +++ |+.-|--.+..| .-|+--|
T Consensus 565 ee~~~~~e~~~-------------------~~lr~~~~e-~~~--------------~~e~L~~aL~am----qdk~~~L 606 (697)
T PF09726_consen 565 EEQIRELESEL-------------------QELRKYEKE-SEK--------------DTEVLMSALSAM----QDKNQHL 606 (697)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHhh-hhh--------------hHHHHHHHHHHH----HHHHHHH
Confidence 76666555554 122222111 111 111222222222 3467777
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 018658 261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAA 315 (352)
Q Consensus 261 EsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~ 315 (352)
|.-|--.=|..++|= -||=+||.|+.-++-.--.+|+.|.||+-.||.
T Consensus 607 E~sLsaEtriKldLf-------saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 607 ENSLSAETRIKLDLF-------SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666553 489999999999999999999999999986553
No 39
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.36 E-value=22 Score=38.54 Aligned_cols=160 Identities=24% Similarity=0.343 Sum_probs=92.9
Q ss_pred HHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhh--hhhHhhh
Q 018658 111 LMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARE--SSQKQLK 188 (352)
Q Consensus 111 l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE--~SqkQLK 188 (352)
+.|+..|..||.-. -.|-++ -.+.|+++ -.+|+--.+.|.++..+|++|.++|+.|.+--...+ ..+...+
T Consensus 264 ~~EiqKL~qQL~qv--e~EK~~---L~~~L~e~--Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~ 336 (717)
T PF09730_consen 264 LSEIQKLKQQLLQV--EREKSS---LLSNLQES--QKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEK 336 (717)
T ss_pred hHHHHHHHHHHHHH--hhHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 35666666666543 233332 23334443 356666677888999999999999999988211111 1111111
Q ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhH
Q 018658 189 DEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (352)
Q Consensus 189 DeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqr 268 (352)
-.+.+.+ .-.-+|.-+.++.+..-+.+--.|++.|+.||+.+-+-...--.--+.+....+
T Consensus 337 ---------------~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~ 397 (717)
T PF09730_consen 337 ---------------ERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLE 397 (717)
T ss_pred ---------------ccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 111223333355566666677789999999999884432222222223334445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 269 RADQELKKRVLKLEFCLQEARAQTRKLQ 296 (352)
Q Consensus 269 R~dQELKKrVlKLEfcLqEaRsQtrKlq 296 (352)
..-|.|+.++..+|=|..+.+.++..|+
T Consensus 398 ~e~q~L~ekl~~lek~~re~qeri~~LE 425 (717)
T PF09730_consen 398 SEVQNLKEKLMSLEKSSREDQERISELE 425 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6678888888888888877777766654
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.32 E-value=41 Score=34.24 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=17.6
Q ss_pred hhHhhhhHHhHHhHHHHHhhhhhhhHhhhH
Q 018658 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKD 189 (352)
Q Consensus 160 E~rV~~lgeQLd~LqkdLqARE~SqkQLKD 189 (352)
.--|..|-.+|+.++..|++-.--....++
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~~~k~ 365 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEEKAKE 365 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 345667777777777777664444333333
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.05 E-value=26 Score=31.76 Aligned_cols=50 Identities=32% Similarity=0.460 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh
Q 018658 45 VSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 45 vslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
..|=.++.++..++..-+..+ +.++.++...|.||.-|+.++..-...|.
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l-------~~~~~~~~~aE~e~~~l~rri~~lE~~le 53 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKL-------KEAEKRAEKAEAEVASLQRRIQLLEEELE 53 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655444333 34556666666666666666554444443
No 42
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.69 E-value=51 Score=33.90 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhH
Q 018658 50 ELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (352)
Q Consensus 50 ELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~ 123 (352)
.|+..+.-++.++.... ....+...+|.+|..+.+.+..-..||..+..+-.++-..++++...|..
T Consensus 39 ~l~q~q~ei~~~~~~i~-------~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 39 QLKQIQKEIAALEKKIR-------EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 35556666665555543 23344455677777777777777778888877777777777776665543
No 43
>PRK11637 AmiB activator; Provisional
Probab=84.34 E-value=42 Score=32.66 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=13.2
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhhh
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRLA 59 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rLa 59 (352)
++.++...+++.+-.+-.+++++...+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455455555554444443
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.53 E-value=47 Score=32.49 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=17.3
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhh
Q 018658 73 QEAEMKAKNMEDEICKLQKTLEERNGRL 100 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~~QL 100 (352)
+.+-.+.+..+.++..++..+.....++
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777766666555554
No 45
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=31 Score=38.56 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=76.8
Q ss_pred ccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhh-hHHHHhhhH--HHHHHhhhchHHHHHHHHHHHhhhhhhhh
Q 018658 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQ-CFVKETLTR--QEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 25 elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq-~~~kEt~tR--k~AE~kak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
++|.-++|+.+-+..+.+++--|-++|+-++....+--| .=+-+|.+. ..|+.+.+.++.+--.|.|.|++++
T Consensus 689 eL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~---- 764 (970)
T KOG0946|consen 689 ELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKN---- 764 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 344445556666666666666666666655544332111 111111111 1233334444444444444444433
Q ss_pred hhhccHHHHHHHhhhhhhhhhHhHhhhHh---hHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHh
Q 018658 102 ASACTAEKYLMQLDGLRSQLAATKATADA---SAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (352)
Q Consensus 102 as~~stek~l~eLd~lRsQLs~tqaTAea---SA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLq 178 (352)
..+-+..+++-.|+. +..-+..-|-|-..+.++|.++..+|-+|....+++-+|..-+--+..
T Consensus 765 --------------~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~ts 830 (970)
T KOG0946|consen 765 --------------ADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTS 830 (970)
T ss_pred --------------HHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444443 334456778899999999999999999999999999888776655444
Q ss_pred hh
Q 018658 179 AR 180 (352)
Q Consensus 179 AR 180 (352)
|-
T Consensus 831 a~ 832 (970)
T KOG0946|consen 831 AA 832 (970)
T ss_pred hh
Confidence 43
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.82 E-value=50 Score=32.30 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 018658 256 KTKELESQLEKQRRADQELKKRVLKLEF 283 (352)
Q Consensus 256 KTKELEsQlekqrR~dQELKKrVlKLEf 283 (352)
+-++|+.+|+.-...-.++.+.....++
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555444
No 47
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.66 E-value=4.6 Score=35.51 Aligned_cols=94 Identities=23% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCCCCCCccccChhhhhhH-------HHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHH
Q 018658 16 SSSSSVPAREIDPLLKDLN-------EKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK 88 (352)
Q Consensus 16 ~~sss~~~~elDPLLkDL~-------EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~k 88 (352)
++.++.+..++++.+-.|. -.+-.+-..|+.+-.+|...+..+...+... ..++.|+..
T Consensus 62 ~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l--------------~~l~~~~~~ 127 (194)
T PF08614_consen 62 GSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRL--------------AELEAELAQ 127 (194)
T ss_dssp ----------------------------------------------------HHHHH--------------HHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHH--------------HHHHHHHHH
Confidence 3334455556666654443 3344455556666666666666665555444 344555555
Q ss_pred HHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhH
Q 018658 89 LQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA 123 (352)
Q Consensus 89 LqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~ 123 (352)
|+..+.+..+.|..-....+-.-.|+.-|.-++..
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~ 162 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNM 162 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555556666777776655543
No 48
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.12 E-value=1e+02 Score=34.04 Aligned_cols=77 Identities=8% Similarity=0.134 Sum_probs=48.3
Q ss_pred hhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhh
Q 018658 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLK 243 (352)
Q Consensus 165 ~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLr 243 (352)
....++..++..+.+-.-....+..+.......+..+++..|+...-.+..++ .++...+.+..-+.--++.++.++
T Consensus 721 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 721 QVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAAL--LDEETLTQLEQLKQNLENQRQQAQ 797 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555666677777888888899999987777777766 666666665544444444433333
No 49
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.09 E-value=67 Score=31.99 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=93.7
Q ss_pred CCCCCCCCCccccChhhhhhHHHHh-------HHHHhHHHHHHHHHHHHHh------hhhhhhhHHHHhhhH------HH
Q 018658 14 SSSSSSSVPAREIDPLLKDLNEKKQ-------SFRKNVVSLAAELKEVRTR------LASQEQCFVKETLTR------QE 74 (352)
Q Consensus 14 ~~~~sss~~~~elDPLLkDL~EKK~-------sfRrNVvslAaELK~~R~r------LasQEq~~~kEt~tR------k~ 74 (352)
..+|||+++.-++=+.+.-|..+-- .+|.-+..|..|++.+|.- =|.||--|.-=+.-+ ++
T Consensus 13 ~~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~ke 92 (310)
T PF09755_consen 13 GMTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKE 92 (310)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554555555555544333 3566678888888888853 356666665555444 33
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHH-----HhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhh
Q 018658 75 AEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM-----QLDGLRSQLAATKATADASAASAQSAQLQCLALVKEL 149 (352)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~-----eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL 149 (352)
-|+=|.++|-|=.-|-..|..|-.||+.--+..|.-|. .++.|+.+|.... ++..+-....-+|.+ ...
T Consensus 93 Ke~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le--~e~~~~q~~le~Lr~----EKV 166 (310)
T PF09755_consen 93 KETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE--KEKSAKQEELERLRR----EKV 166 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH----HHH
Confidence 44556677777777777888888888877666666442 2566666665432 222222222222222 223
Q ss_pred hhhhcchhhhhhHhhhhHHhHHhHHH
Q 018658 150 DEKNSSLKEHEDRVTRLGQQLDNLQK 175 (352)
Q Consensus 150 ~eK~~sLkEhE~rV~~lgeQLd~Lqk 175 (352)
+-.|-.=.|.|.=||+|+.|.|.|-.
T Consensus 167 dlEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 167 DLENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567888999999999998754
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=79.74 E-value=81 Score=32.74 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.2
Q ss_pred hhhhhh
Q 018658 116 GLRSQL 121 (352)
Q Consensus 116 ~lRsQL 121 (352)
.+..+|
T Consensus 507 ~l~~~l 512 (880)
T PRK03918 507 ELEEKL 512 (880)
T ss_pred HHHHHH
Confidence 333333
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.03 E-value=1e+02 Score=32.85 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhh-hccHHHHHHHhhhhhhhhhHh
Q 018658 49 AELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQAS-ACTAEKYLMQLDGLRSQLAAT 124 (352)
Q Consensus 49 aELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as-~~stek~l~eLd~lRsQLs~t 124 (352)
.||-+.-.|||. -=-|.|.||.|=.+|+.-+..--+-.--. ..-...|=.||-..|.-|.-|
T Consensus 42 ~El~~LNDRLA~--------------YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 42 KELQELNDRLAV--------------YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 467777778875 23578888888888877766544333322 222344667777777666554
No 52
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.74 E-value=44 Score=28.59 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhh
Q 018658 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLR 118 (352)
Q Consensus 47 lAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lR 118 (352)
+-.|+.+...+|+..+.-+..+..-=...+.....+++....+++-+++..+.+.+....-..+..|+-+++
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444443333222222233333333333333333333333344443333333434433333
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.06 E-value=23 Score=31.23 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHH
Q 018658 136 QSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRK 215 (352)
Q Consensus 136 qsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~k 215 (352)
.+..-.+..+-.+|.+=-.+-.++..+|..+..+|..+++.+....-....|..++-..+..|-+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~--------------- 134 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKD--------------- 134 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 34455677888888887777788899999999999999999999999988888888777766622
Q ss_pred hhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 018658 216 LLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRV 278 (352)
Q Consensus 216 il~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrV 278 (352)
+..-|..|+.-|.-|+||+-.+-.+- .-+|.++.+-..--.+|=.|.
T Consensus 135 ------------l~~~l~ek~k~~e~l~DE~~~L~l~~----~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 135 ------------LEEELKEKNKANEILQDELQALQLQL----NMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 22334445555666677766655443 234444444444444444443
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.05 E-value=1.7e+02 Score=34.37 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=48.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHhc--CcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhh--HHHHHh---hhhhhhh
Q 018658 185 KQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD--EIKIMS---AHWKLKT 257 (352)
Q Consensus 185 kQLKDeVlRIE~dIm~A~akag--~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrd--eirimS---aHW~~KT 257 (352)
.++..++...|+....+=+... ......+..+...|+|.+--+-- ...|++ +.+++. +-|+.+-
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA---------RELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH---------HHHHHHhHHHHHHHHhhHHHHHHH
Confidence 3444555555555544443333 34566777788888887654322 222222 334443 4689999
Q ss_pred HHHHHHHHHhHhhHHHH
Q 018658 258 KELESQLEKQRRADQEL 274 (352)
Q Consensus 258 KELEsQlekqrR~dQEL 274 (352)
.+||..++.|+++.+=+
T Consensus 523 ~~l~~~~~~q~~~~~~~ 539 (1486)
T PRK04863 523 SELEQRLRQQQRAERLL 539 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876533
No 55
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=75.91 E-value=1e+02 Score=31.93 Aligned_cols=201 Identities=24% Similarity=0.320 Sum_probs=111.9
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhh-hhhh--------
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG-RLQA-------- 102 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~-QL~a-------- 102 (352)
+|++-|..|=--+-+|-.++++++.-|..|.-.+.+=+..-+.+. -+|..+. -... -+.+
T Consensus 75 ~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~ 143 (426)
T smart00806 75 ELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSA-------ANIARPA----ASPSPVLASSSSAISLA 143 (426)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcc-------cCccccc----CCCCccccccccccccc
Confidence 347778888888999999999999999888776654222111111 1111110 0000 0010
Q ss_pred --hhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhh
Q 018658 103 --SACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (352)
Q Consensus 103 --s~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqAR 180 (352)
+....-.++.||..||-.|++.+.|-...-..-+... +.+-+|...++.--.-++ | +.=.-|.
T Consensus 144 ~~~~~~~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm-------~~i~~k~~~~k~~~~~~~--~---~s~R~y~--- 208 (426)
T smart00806 144 NNPDKLNKEQRAELKSLQRELAVLRQTHNSFFTEIKESI-------KDILEKIDKFKSSSLSAS--G---SSNRAYV--- 208 (426)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccC--C---CcchHHH---
Confidence 0111224789999999999999988765544333322 222222222222111111 0 0001111
Q ss_pred hhhhHhhhHHHHHH----H--HHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhh
Q 018658 181 ESSQKQLKDEVFRI----E--QDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWK 254 (352)
Q Consensus 181 E~SqkQLKDeVlRI----E--~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~ 254 (352)
+.|++.|-++.-++ + .|+|+++.|== -.==--++|+.++.+++.+..--.++.++.+=|..--++|+
T Consensus 209 e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV-------~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~Wk 281 (426)
T smart00806 209 ESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV-------AQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWK 281 (426)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 23444444442222 2 36666654321 00011368999999999999999999999999999999996
Q ss_pred hhhHHHHHHHHHhH
Q 018658 255 LKTKELESQLEKQR 268 (352)
Q Consensus 255 ~KTKELEsQlekqr 268 (352)
|-.|+.|++--
T Consensus 282 ---KiWE~EL~~Vc 292 (426)
T smart00806 282 ---KIWEAELDKVC 292 (426)
T ss_pred ---HHHHHHHHHHH
Confidence 55666665533
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=73.52 E-value=1.1 Score=46.39 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 018658 256 KTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDK 304 (352)
Q Consensus 256 KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDk 304 (352)
+.++||..+.+++..-.-|+...-..|+.=.+-++=.+||++|..-+.+
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~e 306 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEE 306 (722)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777778888888888888888888888655543
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.12 E-value=2e+02 Score=33.83 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=28.0
Q ss_pred hhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHH
Q 018658 150 DEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (352)
Q Consensus 150 ~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dI 198 (352)
.+...-+.+.+..+..+.++++.++..+..-.....++..++...+..|
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666666666666554555555566666666555
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.84 E-value=90 Score=29.83 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=25.6
Q ss_pred cchhhHHHhhhccCchhHHhhhhhhhcc-hhHhhhhhhH
Q 018658 208 NKDCELRKLLDEVSPKNFERINKLLVVK-DEEIHKLKDE 245 (352)
Q Consensus 208 ~~~~El~kil~evspknfe~in~lL~~k-D~eIakLrde 245 (352)
..-.+-..+-++.+|.=|...-++..-+ +-.|+.++.+
T Consensus 160 ~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g~ 198 (239)
T COG1579 160 ELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEGR 198 (239)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecCC
Confidence 3334555667778888777777777666 7777766654
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.61 E-value=91 Score=29.79 Aligned_cols=65 Identities=25% Similarity=0.411 Sum_probs=50.8
Q ss_pred HHHHHHhhhhhhhhcc----hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHH
Q 018658 140 LQCLALVKELDEKNSS----LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204 (352)
Q Consensus 140 lqCl~L~keL~eK~~s----LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ak 204 (352)
++=+..+-.||....+ .++|..-+.++-..++-+.+++.+.+.--..|+.+|.++|.||=++-.+
T Consensus 6 ~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 6 LKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455544444 4678888999999999999999999999999999999999999665544
No 60
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.50 E-value=1.2e+02 Score=31.05 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=33.2
Q ss_pred hhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHH
Q 018658 160 EDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQT 201 (352)
Q Consensus 160 E~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A 201 (352)
...|..+...|+.....|+.-.---..|++.|-.+..+|...
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~ 321 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKE 321 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888899999999888888888888888887777443
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.83 E-value=83 Score=28.59 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 258 KELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (352)
Q Consensus 258 KELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKl 295 (352)
++.|...+.--|.-+-|-+.|=.||--|...+.....+
T Consensus 186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 62
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.55 E-value=37 Score=31.83 Aligned_cols=115 Identities=30% Similarity=0.455 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHH--HHHHHhhhhhhhhhhhccHHHHHHHhhhhhhh
Q 018658 43 NVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICK--LQKTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (352)
Q Consensus 43 NVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~k--LqK~Ledk~~QL~as~~stek~l~eLd~lRsQ 120 (352)
-+|+|=+-|+++|+.|...+..... -..-...|++|-|+|. ||....+. ..|+-. ..++-.|+-+||..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~-----l~~~~~~K~~ELE~ce~ELqr~~~Ea-~lLrek---l~~le~El~~Lr~~ 102 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQE-----LQDSLRTKQLELEVCENELQRKKNEA-ELLREK---LGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHhhHhHHHhHHHHHHHhCHH-HHhhhh---hhhhHHHHHHHHHH
Confidence 4789999999999998877654431 0112345666666663 22222211 112221 22233567777777
Q ss_pred hhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHh
Q 018658 121 LAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (352)
Q Consensus 121 Ls~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLq 178 (352)
++.. +..+.+.+++. +-++-...-..|.+.+..|..+++.|+.+|.
T Consensus 103 l~~~---------~~~~~~~~~l~---~~deak~~~~~~~~~~~~l~~e~erL~aeL~ 148 (202)
T PF06818_consen 103 LACA---------GRLKRQCQLLS---ESDEAKAQRQAGEDELGSLRREVERLRAELQ 148 (202)
T ss_pred HHhh---------ccchhhhcccc---ccchhHHhhccccccchhHHHHHHHHHHHHH
Confidence 7664 11112222221 1111111111256677788888888887775
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=70.52 E-value=1.5e+02 Score=31.38 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=19.3
Q ss_pred CchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhh
Q 018658 221 SPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWK 254 (352)
Q Consensus 221 spknfe~in~lL~~kD~eIakLrdeirimSaHW~ 254 (352)
.+..++.++.-+...-.++..|+.+|.-+.+-..
T Consensus 672 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~ 705 (895)
T PRK01156 672 ITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666556666666666655554433
No 64
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.21 E-value=30 Score=32.68 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=68.4
Q ss_pred HhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHH----hcCcchhhHHHhhh----------ccCchh----HHhhhhhh
Q 018658 171 DNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK----AGVNKDCELRKLLD----------EVSPKN----FERINKLL 232 (352)
Q Consensus 171 d~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ak----ag~~~~~El~kil~----------evspkn----fe~in~lL 232 (352)
+.||+.+..-+-...+.+.=+-+.|.|++..-+- .+++.+..+.-... ..+|.. ...-+.+|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4455555555555555666688899999888754 22233333322211 223333 12233344
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMG 299 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmg 299 (352)
.+ |..=||. ++.|..|||.++-++..+-+.|+..|=+|.===-.-=-.+|-||-.+
T Consensus 82 pI----VtsQRDR-------FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 82 PI----VTSQRDR-------FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 32 4455554 45788999999999999999999888776432222223556666555
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.93 E-value=2.8e+02 Score=33.61 Aligned_cols=250 Identities=24% Similarity=0.293 Sum_probs=128.9
Q ss_pred ccCCCCCCCCCccccChhhhhhHHHHhHH----HHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHH
Q 018658 12 TSSSSSSSSVPAREIDPLLKDLNEKKQSF----RKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEIC 87 (352)
Q Consensus 12 ~~~~~~sss~~~~elDPLLkDL~EKK~sf----RrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~ 87 (352)
++|+..++.++.+ ++-.|+||.+-=.+. +.|.-.+--++...+--.-----...+....+.+|..|.++++..|.
T Consensus 621 nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie 699 (1822)
T KOG4674|consen 621 NSSALDQTEAPRA-KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLE 699 (1822)
T ss_pred Cchhhcccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554 667777776532211 12222222222222221111111234555667888888888888888
Q ss_pred HHHHHHh---hhhhhhhhhhccHHH----HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhh
Q 018658 88 KLQKTLE---ERNGRLQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHE 160 (352)
Q Consensus 88 kLqK~Le---dk~~QL~as~~stek----~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE 160 (352)
-+....+ +++--|..++...++ +..||-.-.+++... +++++.. -.-+..|+.-+
T Consensus 700 ~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~l--e~ev~~L----------------KqE~~ll~~t~ 761 (1822)
T KOG4674|consen 700 LTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKL--EAELSNL----------------KQEKLLLKETE 761 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHH----------------HHHHHHHHHHH
Confidence 7766544 777777777777766 334444444444332 2232221 11123333333
Q ss_pred hHhhh-----------hHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhh
Q 018658 161 DRVTR-----------LGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERIN 229 (352)
Q Consensus 161 ~rV~~-----------lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in 229 (352)
.|... |---|+++|-....++-|..-. .-+.|.-|++-.
T Consensus 762 ~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~---k~~~e~~i~eL~--------------------------- 811 (1822)
T KOG4674|consen 762 ERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMAT---KDKCESRIKELE--------------------------- 811 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---------------------------
Confidence 33322 2222333444433444333322 234455554443
Q ss_pred hhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 018658 230 KLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKEL 309 (352)
Q Consensus 230 ~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKEl 309 (352)
.++++||-+.-=++-|.+-=|..++.||+.++..--++++....+==-|-.++.-+.+|.---.-=++-|+..
T Consensus 812 -------~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 812 -------RELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666677777788888888888888877777766665555555555555543333334444444
Q ss_pred HHHHHhhh
Q 018658 310 RDQLAAKQ 317 (352)
Q Consensus 310 rdq~a~KQ 317 (352)
.-++-...
T Consensus 885 ~~~~~~l~ 892 (1822)
T KOG4674|consen 885 KTQLLNLD 892 (1822)
T ss_pred HHHHhhcc
Confidence 44444433
No 66
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.28 E-value=59 Score=29.58 Aligned_cols=78 Identities=33% Similarity=0.504 Sum_probs=56.9
Q ss_pred HhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 018658 226 ERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKA 305 (352)
Q Consensus 226 e~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDka 305 (352)
.+||+||.+||+-...+. ..|.+|.+++.+.--.+++-..+.+||-+|-+-+-+.-++-.+-|..|+-
T Consensus 93 ~RL~kLL~lk~~~~~~~e------------~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~e 160 (190)
T PF05266_consen 93 SRLNKLLSLKDDQEKLLE------------ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKE 160 (190)
T ss_pred HHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999987665554 35778888888855566666777788888888887777777777777777
Q ss_pred HHHHHHHHHh
Q 018658 306 IKELRDQLAA 315 (352)
Q Consensus 306 lKElrdq~a~ 315 (352)
|-.+......
T Consensus 161 i~~lks~~~~ 170 (190)
T PF05266_consen 161 ISRLKSEAEA 170 (190)
T ss_pred HHHHHHHHHH
Confidence 6666544433
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.24 E-value=2.6e+02 Score=32.85 Aligned_cols=259 Identities=22% Similarity=0.307 Sum_probs=124.0
Q ss_pred HHhHHHHhHHHHHHHHHHHHHhhhhhhhhHH-HHhhhHHHHHHhhhchHHHHHHHHHHHhh-------hhhhhhhhhccH
Q 018658 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFV-KETLTRQEAEMKAKNMEDEICKLQKTLEE-------RNGRLQASACTA 107 (352)
Q Consensus 36 KK~sfRrNVvslAaELK~~R~rLasQEq~~~-kEt~tRk~AE~kak~ME~Ei~kLqK~Led-------k~~QL~as~~st 107 (352)
|.-.+..-.-++..+||+-.-+...-....+ ++..-++..+.+++........+++.+.+ +-++|---..-.
T Consensus 335 ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~ 414 (1293)
T KOG0996|consen 335 KIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKI 414 (1293)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666665555542222111 11112233444444444333334443332 223333334444
Q ss_pred HHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhh----HhhhhHHhHHhHHHHHhhhhhh
Q 018658 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHED----RVTRLGQQLDNLQKDLQARESS 183 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~----rV~~lgeQLd~LqkdLqARE~S 183 (352)
.|.-.+++..|...+.....-+-+--.-+-.|.---.|.+.+..-+..|.+--+ .-..+.+..+.+++.|.--...
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 445566666666655544333222222222222112222222222233322222 1222334444455554444444
Q ss_pred hHhhhHH--HHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHH
Q 018658 184 QKQLKDE--VFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (352)
Q Consensus 184 qkQLKDe--VlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELE 261 (352)
-.+.+-| |..-|-+||---.-.|..+.-++.+-|...+-.+-|+-+.+. .++.+| ..|+.+-++.+
T Consensus 495 ~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~--------~~k~~l----~~~k~e~~~~~ 562 (1293)
T KOG0996|consen 495 VNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELD--------DLKEEL----PSLKQELKEKE 562 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhh----hhHHHHHHHHH
Confidence 4445555 566666777666666666666776666665555555433332 222222 34556666777
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 018658 262 SQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELR 310 (352)
Q Consensus 262 sQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElr 310 (352)
..|++-+-+.+.|+..+-++===+-|+++++-+ .--|.++|+-|+
T Consensus 563 k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~----~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 563 KELPKLRKEERNLKSQLNKLRQRVEEAKSSLSS----SRSRNKVLDALM 607 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHH
Confidence 777777777777776666665556666666553 334667777664
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.53 E-value=2.5e+02 Score=32.53 Aligned_cols=190 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchh
Q 018658 78 KAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (352)
Q Consensus 78 kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLk 157 (352)
+.+..+.|+.-.|+.|++-..||..--.+..+| ++|+.||... ++=++|.+. +-.+++-.
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf----~~l~~ql~l~---------------~~~l~l~~~-r~~~~e~~ 737 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKF----RDLKQQLELK---------------LHELALLEK-RLEQNEFH 737 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---------------HHHHHHHHH-HHhcChHh
Q ss_pred hhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcC-----cchhhHHHhhhccCchhHHhhhhhh
Q 018658 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGV-----NKDCELRKLLDEVSPKNFERINKLL 232 (352)
Q Consensus 158 EhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~-----~~~~El~kil~evspknfe~in~lL 232 (352)
---+.+..+-+-+..++..+...+-.+++--|+|--||.++.++-+--|. -+.-...+-=-+-+.++.++=-...
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhh----------------------------hHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLK----------------------------TKELESQLEKQRRADQELKKRVLKLEFC 284 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~K----------------------------TKELEsQlekqrR~dQELKKrVlKLEfc 284 (352)
..=--|+.-|.+||+-.-.+|... +.+|..|-.++|-.|-|+..-+.+-|-|
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~ 897 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKC 897 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHH
Q ss_pred HHH
Q 018658 285 LQE 287 (352)
Q Consensus 285 LqE 287 (352)
++|
T Consensus 898 ~~e 900 (1174)
T KOG0933|consen 898 LSE 900 (1174)
T ss_pred HHH
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.04 E-value=2.7e+02 Score=32.67 Aligned_cols=257 Identities=25% Similarity=0.322 Sum_probs=125.4
Q ss_pred hhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhH---HHHHHhhhchHHHHHHH-------------HH
Q 018658 28 PLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTR---QEAEMKAKNMEDEICKL-------------QK 91 (352)
Q Consensus 28 PLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tR---k~AE~kak~ME~Ei~kL-------------qK 91 (352)
|-..+|.-....+--.|-++|.++......++.+|.-..+.+.+- ++-+.....|+-|+..+ |-
T Consensus 813 ~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~ 892 (1293)
T KOG0996|consen 813 ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQN 892 (1293)
T ss_pred HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334566766777777888888888888888888888765554422 22233344455555444 33
Q ss_pred HHhhh-hhhhhhhhccHHHHHHHhhhhhhhh---hHhHhhhHhhHHhHHHH----HHHHHHH------------------
Q 018658 92 TLEER-NGRLQASACTAEKYLMQLDGLRSQL---AATKATADASAASAQSA----QLQCLAL------------------ 145 (352)
Q Consensus 92 ~Ledk-~~QL~as~~stek~l~eLd~lRsQL---s~tqaTAeaSA~SAqsa----qlqCl~L------------------ 145 (352)
.+..- ++-++.--...++-...+|.|-..+ .+.-.|++---+.++-- .--|..+
T Consensus 893 ~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~ 972 (1293)
T KOG0996|consen 893 KIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKA 972 (1293)
T ss_pred HHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33221 2222333333333333333332221 22222222222222110 0112222
Q ss_pred ---hhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhh-------hhHhhhHHHHHHHHHHHHHHHHhcCcchhhH--
Q 018658 146 ---VKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARES-------SQKQLKDEVFRIEQDIMQTIAKAGVNKDCEL-- 213 (352)
Q Consensus 146 ---~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~-------SqkQLKDeVlRIE~dIm~A~akag~~~~~El-- 213 (352)
-+++++--.+++||-.....+-.++++..+..-+... --.+.+-+..-|+.+||.-...-...+-|.+
T Consensus 973 ~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE 1052 (1293)
T KOG0996|consen 973 AELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTE 1052 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchh
Confidence 2222333334444444444444444444443332222 1122333455566677665544434343433
Q ss_pred ---HHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHH-----------hHhhHHHHHHHHH
Q 018658 214 ---RKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEK-----------QRRADQELKKRVL 279 (352)
Q Consensus 214 ---~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlek-----------qrR~dQELKKrVl 279 (352)
+--++.++|.+.|..- -++.|-. +-.-||.+++. -++..-+..+||.
T Consensus 1053 ~~~~~~~~~~~~Eeleae~-----~~~~i~e--------------~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~ 1113 (1293)
T KOG0996|consen 1053 TRPQIELDVESPEELEAEM-----LEDNINE--------------KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVA 1113 (1293)
T ss_pred hccccccccCChHHHHhhh-----cHhhHHH--------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 2224445555544322 1111111 22334444443 3677788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 018658 280 KLEFCLQEARAQTRKLQRMGERRD 303 (352)
Q Consensus 280 KLEfcLqEaRsQtrKlqrmgErRD 303 (352)
.|+--.|.-+.--.+|+.+..+|=
T Consensus 1114 ~l~~~t~kr~~~re~l~~Lrk~Rl 1137 (1293)
T KOG0996|consen 1114 ELEKFTQKRDEHREKLEELRKRRL 1137 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877777877777773
No 70
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.38 E-value=1.5e+02 Score=29.03 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=29.2
Q ss_pred hHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHH
Q 018658 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203 (352)
Q Consensus 161 ~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~a 203 (352)
.++..+..|+..+.......-+--+.+++++-.++..+.+.+.
T Consensus 254 ~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 254 GRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666666666666666667777788888777777766553
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.06 E-value=1.4e+02 Score=28.43 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=7.0
Q ss_pred HhhhhhhhhhHhHhh
Q 018658 113 QLDGLRSQLAATKAT 127 (352)
Q Consensus 113 eLd~lRsQLs~tqaT 127 (352)
+|..+|..|+...+.
T Consensus 210 eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 210 ELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555444443
No 72
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=62.60 E-value=31 Score=36.85 Aligned_cols=77 Identities=26% Similarity=0.233 Sum_probs=62.4
Q ss_pred hhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHH--HHhHhhHHHHHHHHHHHHHHHH
Q 018658 210 DCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQL--EKQRRADQELKKRVLKLEFCLQ 286 (352)
Q Consensus 210 ~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQl--ekqrR~dQELKKrVlKLEfcLq 286 (352)
..++.++.++|--+|.|-+|+++.-=|.|++..+.+=++.+--=.+|--+=|+++ |.+|+.+||.+++-...|-=++
T Consensus 170 ~~~~~e~~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~ 248 (591)
T KOG2412|consen 170 VEKLSETRKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQ 248 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788888999999999999998999888888877776666666666665 4688999999999999888777
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.37 E-value=1.5e+02 Score=28.35 Aligned_cols=141 Identities=23% Similarity=0.348 Sum_probs=71.4
Q ss_pred HHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHH---HHHHhhhhhhhhcchhhhhhHhhhh
Q 018658 90 QKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQ---CLALVKELDEKNSSLKEHEDRVTRL 166 (352)
Q Consensus 90 qK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlq---Cl~L~keL~eK~~sLkEhE~rV~~l 166 (352)
..-|++.-+.|..-.-...+++..++++.-+|..-++.-..-....+...-. |-. .+|..--..|.+|...+...
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~--~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQ--EELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444455555555555555554444433333333322221 221 34444445566666666666
Q ss_pred HHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHH
Q 018658 167 GQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI 246 (352)
Q Consensus 167 geQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdei 246 (352)
...|+.++..++.-+..-..+..+.-.....|-++= ++++ +.-.....||.+|++++
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~------------~~~~-----------~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAE------------KIRE-----------ECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH-----------HhcCCCHHHHHHHHHHH
Confidence 666666666666555555555555555555553322 1111 12234557888888888
Q ss_pred HHHhh--hhhh
Q 018658 247 KIMSA--HWKL 255 (352)
Q Consensus 247 rimSa--HW~~ 255 (352)
+.|.. +|+.
T Consensus 286 ~~Le~~~gw~~ 296 (325)
T PF08317_consen 286 DALEKLTGWKI 296 (325)
T ss_pred HHHHHHHCcEE
Confidence 87753 4543
No 74
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=62.06 E-value=16 Score=32.72 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018658 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMG 299 (352)
Q Consensus 254 ~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmg 299 (352)
..|+.|+|+|. +||+||=-|+.+|-++..|.|.+
T Consensus 115 ~~k~~eMe~Qv------------~iL~lE~eLe~ar~kL~~lRk~~ 148 (152)
T PF01608_consen 115 QAKRQEMEAQV------------RILKLEKELEKARKKLAELRKAH 148 (152)
T ss_dssp -HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999997 59999999999999988887764
No 75
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.72 E-value=3.4e+02 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred hhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHH
Q 018658 158 EHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ 200 (352)
Q Consensus 158 EhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~ 200 (352)
+|-..++.+-++.-.|+.++.++..-.+.+++ .-+-..++..
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~ 661 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERIS 661 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHH
Confidence 34444555555555566666666555555555 3333334333
No 76
>PTZ00491 major vault protein; Provisional
Probab=59.24 E-value=1.9e+02 Score=32.51 Aligned_cols=86 Identities=26% Similarity=0.268 Sum_probs=49.2
Q ss_pred HHHHHHHHh-------hhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcch
Q 018658 138 AQLQCLALV-------KELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKD 210 (352)
Q Consensus 138 aqlqCl~L~-------keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~ 210 (352)
|.+.|-++. ..+..+-..--+|+-..|.|.-+-. |.|..=|. ..++.-|-.|=.|-..|+|+||...-
T Consensus 739 a~lra~a~~i~~~ael~~~~~~~~~e~~~~~~~~~le~~k~---~~la~ie~--~kf~~~v~aig~~T~~~iA~agpe~q 813 (850)
T PTZ00491 739 AELRAKALRIEAEAELEKLRKRQELELEYEQAQNELEIAKA---KELADIEA--TKFERIVEALGRETLIAIARAGPELQ 813 (850)
T ss_pred HHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHH--HHHHHHHHhhChHHHHHHHHhCcHhH
Confidence 455565543 3333344444455555555543322 22222222 24555588888999999999998777
Q ss_pred hhHHHhh--------hccCchhHHhh
Q 018658 211 CELRKLL--------DEVSPKNFERI 228 (352)
Q Consensus 211 ~El~kil--------~evspknfe~i 228 (352)
-.|+.-| |--||=|.=+.
T Consensus 814 aklL~~LGl~~~litDG~sPiNLf~t 839 (850)
T PTZ00491 814 AKLLGGLGLKGYLVTDGKSPINLFNT 839 (850)
T ss_pred HHHHhhcCCceEEeecCCCchhHHhh
Confidence 7776633 56677775443
No 77
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.22 E-value=1.9e+02 Score=31.73 Aligned_cols=103 Identities=25% Similarity=0.337 Sum_probs=61.4
Q ss_pred CCCCccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhh
Q 018658 19 SSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNG 98 (352)
Q Consensus 19 ss~~~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~ 98 (352)
..++..++++ +.=|.-|-...-.-|..|.+|||..|.++..=+.-+..+. ..-+....+|.+.+..+.++..+..+
T Consensus 344 ~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek---~~~~~e~q~L~ekl~~lek~~re~qe 419 (717)
T PF09730_consen 344 GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEK---DRLESEVQNLKEKLMSLEKSSREDQE 419 (717)
T ss_pred cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3444445544 3335555566667788999999999999988776443332 23455566777777777775544422
Q ss_pred hhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHH
Q 018658 99 RLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQ 139 (352)
Q Consensus 99 QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaq 139 (352)
.+.+|-+.|.++..+|.-+.++--+||
T Consensus 420 --------------ri~~LE~ELr~l~~~A~E~q~~LnsAQ 446 (717)
T PF09730_consen 420 --------------RISELEKELRALSKLAGESQGSLNSAQ 446 (717)
T ss_pred --------------HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555554444333333
No 78
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.83 E-value=23 Score=30.34 Aligned_cols=42 Identities=31% Similarity=0.496 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 256 KTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQR 297 (352)
Q Consensus 256 KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqr 297 (352)
|--.||.+...+.++-..|++||--|||.|..-|+...++.-
T Consensus 33 rIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 33 RIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 445688888889999999999999999999999988776554
No 79
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.77 E-value=3.5e+02 Score=31.49 Aligned_cols=142 Identities=22% Similarity=0.456 Sum_probs=90.0
Q ss_pred hhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHH-hcCcchhhHHHhhhccCchhHH
Q 018658 148 ELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK-AGVNKDCELRKLLDEVSPKNFE 226 (352)
Q Consensus 148 eL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ak-ag~~~~~El~kil~evspknfe 226 (352)
.|.....-+.-|+.-....|..+..++++|+-||-+-+.|...+-.+|-.|..-|.. .|.. -+-+|
T Consensus 705 ~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-------------ir~Ye 771 (1141)
T KOG0018|consen 705 SLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-------------IREYE 771 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-------------eehHH
Confidence 344445567788888889999999999999999999999999999999988766532 2221 11122
Q ss_pred hhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 018658 227 RINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAI 306 (352)
Q Consensus 227 ~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkal 306 (352)
+.-. -.++|+=+ ..+.+----||.||+=-+ +++..+||-++|=.++-..-++..++.-.++=-+.|
T Consensus 772 e~~~-----~~~~a~k~-------~ef~~q~~~l~~~l~fe~--~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i 837 (1141)
T KOG0018|consen 772 EREL-----QQEFAKKR-------LEFENQKAKLENQLDFEK--QKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKII 837 (1141)
T ss_pred HHHH-----HHHHHHHH-------HHHHHHHHHHhhhhhhee--cccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 1111 11111111 111122222333333222 277888888888888888888888887666666777
Q ss_pred HHHHHHHHhhh
Q 018658 307 KELRDQLAAKQ 317 (352)
Q Consensus 307 KElrdq~a~KQ 317 (352)
.++ .++..|+
T Consensus 838 ~e~-~~~e~k~ 847 (1141)
T KOG0018|consen 838 AEI-EELEKKN 847 (1141)
T ss_pred hhH-HHHHHHH
Confidence 777 5555544
No 80
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.53 E-value=1.3e+02 Score=26.58 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHhhh
Q 018658 272 QELKKRVLKLEFCLQEARAQTRKLQR-MGERRDKAIKELRDQLAAKQ 317 (352)
Q Consensus 272 QELKKrVlKLEfcLqEaRsQtrKlqr-mgErRDkalKElrdq~a~KQ 317 (352)
+...+.+.++.=-+++.+.+...++. +..+|...+.+|..=+..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~ 161 (302)
T PF10186_consen 115 ESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQ 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 34444455555556666666666654 45577777889888877754
No 81
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.78 E-value=2.5e+02 Score=29.60 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=35.5
Q ss_pred HHHHhhhHH--HHHHhhhchHHHHHHHHHHHhhhhhhhhhhhc---------cHHHHHHHhhhhhhhhhHhH
Q 018658 65 FVKETLTRQ--EAEMKAKNMEDEICKLQKTLEERNGRLQASAC---------TAEKYLMQLDGLRSQLAATK 125 (352)
Q Consensus 65 ~~kEt~tRk--~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~---------stek~l~eLd~lRsQLs~tq 125 (352)
|..++..++ .+.+-..-+++++..+++.|++-..+|.+.-. .++.++.++.+|+.|++..+
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 23333556677777777777666555544322 24557778888888876654
No 82
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.60 E-value=1.9e+02 Score=29.43 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=43.2
Q ss_pred HhhhhhhhcchhHhhhhhhHHHHHhhhh----hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 226 ERINKLLVVKDEEIHKLKDEIKIMSAHW----KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (352)
Q Consensus 226 e~in~lL~~kD~eIakLrdeirimSaHW----~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKl 295 (352)
|-+|-++.+--.||..||.|+.-|..-+ .-|.++++.-+|. .+-||-||| |-+..|+.-+
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es-------~qtRisklE---~~~~Qq~~q~ 328 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMES-------CQTRISKLE---QQQQQQVVQL 328 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHH---HHHhhhhhhh
Confidence 4579999999999999999998776533 3455666655554 567888998 5455555544
No 83
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=57.40 E-value=3.5e+02 Score=31.09 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=11.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHh
Q 018658 295 LQRMGERRDKAIKELRDQLAA 315 (352)
Q Consensus 295 lqrmgErRDkalKElrdq~a~ 315 (352)
|....+++++++..|+.+...
T Consensus 430 l~~~~~~~~~~i~~L~~~~~~ 450 (1353)
T TIGR02680 430 ADRVIAQRSEQVALLRRRDDV 450 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666555543
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=57.09 E-value=93 Score=32.13 Aligned_cols=10 Identities=30% Similarity=0.242 Sum_probs=6.4
Q ss_pred cccccccccc
Q 018658 324 TEKQNFWETS 333 (352)
Q Consensus 324 ~~kqnfWess 333 (352)
+..||+|..|
T Consensus 331 ~~~qn~l~Hs 340 (520)
T PRK12704 331 SYGQNVLQHS 340 (520)
T ss_pred cCCCcHhHHH
Confidence 4567788743
No 85
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.18 E-value=1.5e+02 Score=31.97 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh-------hhccHHH-H
Q 018658 39 SFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA-------SACTAEK-Y 110 (352)
Q Consensus 39 sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~a-------s~~stek-~ 110 (352)
-+.+-|-.|..+..+-..+|..=++. ++.. +.-|+.=|..+| +|..-|+.|..|-..+.- ..+.+|+ |
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~--~~~l-~~~ae~LaeR~e-~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~ 637 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEE--RKSL-RESAEKLAERYE-EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREF 637 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 34444555555555444444332221 1222 122333334443 355556666666554432 2456676 9
Q ss_pred HHHhhhhhhhhhHhHhhhH
Q 018658 111 LMQLDGLRSQLAATKATAD 129 (352)
Q Consensus 111 l~eLd~lRsQLs~tqaTAe 129 (352)
.+||+.++.+|..-++.-+
T Consensus 638 ~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999877655433
No 86
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.12 E-value=1.7e+02 Score=27.22 Aligned_cols=53 Identities=42% Similarity=0.589 Sum_probs=34.3
Q ss_pred hhhHhh------hhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHH-HHHHhcCcchhhHHHhhh
Q 018658 159 HEDRVT------RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQ-TIAKAGVNKDCELRKLLD 218 (352)
Q Consensus 159 hE~rV~------~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~-A~akag~~~~~El~kil~ 218 (352)
-++||+ +|-+||..|..+|. ++||+=.....||+- ...++|.+|-.-|++|=.
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~-------~~kde~k~T~~D~~h~en~~~g~~ky~tl~~i~~ 233 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELE-------QLKDEEKQTQLDIIHAENVRAGRDKYKTLRQIRQ 233 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHH-------TTB-CCG--HHHHHHHHHHHTT--HHHHHHHHT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-------HHhhhhccchhHHHHHHHHHhchhHHHHHHHHhc
Confidence 456776 57889988888875 577777788889886 467899999998888743
No 87
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.95 E-value=1.5e+02 Score=30.17 Aligned_cols=110 Identities=18% Similarity=0.313 Sum_probs=64.6
Q ss_pred ccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhh
Q 018658 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASA 104 (352)
Q Consensus 25 elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~ 104 (352)
..+-.+.-+.+.=..+|.....|..++...++.+- +|..|..|+. ++.--|...||+.|..+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~-~e~~~~~~~L--qEEr~R~erLEeqlNd~--------------- 270 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ-REYQFILEAL--QEERYRYERLEEQLNDL--------------- 270 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHhHHHHHHHHHHHHHH---------------
Confidence 44445556666667788889999999988888743 3444444443 45556666777777654
Q ss_pred ccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhH
Q 018658 105 CTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLG 167 (352)
Q Consensus 105 ~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lg 167 (352)
+|-..+|+--|+..|+-+. .--+.|--.=.+.++|--.+. --||.+|.
T Consensus 271 --~elHq~Ei~~LKqeLa~~E----------EK~~Yqs~eRaRdi~E~~Es~---qtRisklE 318 (395)
T PF10267_consen 271 --TELHQNEIYNLKQELASME----------EKMAYQSYERARDIWEVMESC---QTRISKLE 318 (395)
T ss_pred --HHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhHHHHHHHHH---HHHHHHHH
Confidence 4555677777777765432 222333334445555543333 34555555
No 88
>PF14282 FlxA: FlxA-like protein
Probab=55.67 E-value=43 Score=27.57 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=20.4
Q ss_pred CCCCCCCCCccccChhhhhhHHHHhHHHHhHHHHH
Q 018658 14 SSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLA 48 (352)
Q Consensus 14 ~~~~sss~~~~elDPLLkDL~EKK~sfRrNVvslA 48 (352)
++++|++.+....|..++.|......+-.-+-.|.
T Consensus 5 ~s~~ss~~s~~~~~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 5 SSSSSSSSSSGSSDSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred ccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444458888888887766655444443
No 89
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.58 E-value=1.1e+02 Score=24.61 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=39.7
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHh
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (352)
.|..+...++.+++....-|++.-.+...-.+....|+..+..-+...+.+-.+|..|+....
T Consensus 36 ~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 36 ELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666655555666666655554443
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.25 E-value=1.4e+02 Score=25.86 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=32.8
Q ss_pred hhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHH
Q 018658 78 KAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQS 137 (352)
Q Consensus 78 kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqs 137 (352)
++-.+|..+..|..+...+..++.+-..-....=.+||.+..+|..++.-++.+.-....
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 333344444444444444444443333333344467888888888888877777654433
No 91
>PRK09039 hypothetical protein; Validated
Probab=54.68 E-value=2.2e+02 Score=27.84 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 018658 191 VFRIEQDIMQTIA 203 (352)
Q Consensus 191 VlRIE~dIm~A~a 203 (352)
+-.++..|-.|++
T Consensus 174 i~~L~~~L~~a~~ 186 (343)
T PRK09039 174 IADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 92
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.24 E-value=83 Score=26.95 Aligned_cols=61 Identities=31% Similarity=0.479 Sum_probs=34.7
Q ss_pred ccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhh
Q 018658 23 AREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEE 95 (352)
Q Consensus 23 ~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Led 95 (352)
..++|.-+.+|.+.-..++..+-.|-+||+..++.+.. .+.......++.|+..|+.+|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------------~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------------EELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444433 33455566778888888877765
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.09 E-value=2.3e+02 Score=27.72 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=10.5
Q ss_pred hhchHHHHHHHHHHHhhhhhhh
Q 018658 79 AKNMEDEICKLQKTLEERNGRL 100 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL 100 (352)
...+|.++..|....-+.++++
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHH
Confidence 3344455555555554444444
No 94
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=52.88 E-value=1e+02 Score=28.32 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=66.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhh
Q 018658 73 QEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEK 152 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK 152 (352)
..+|.+-+.||.++.+|+|.+..=-..+++...+.-.+...+.++-.-..... + ....-.+...+++|+.
T Consensus 14 ~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~---~------~~~~~~y~~~v~~l~~- 83 (224)
T cd07591 14 EFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKD---G------AMLSQEYKQAVEELDA- 83 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---H------hHHHHHHHHHHHHHHH-
Confidence 46889999999999999999998888888888887777777776654333210 0 0111234444555542
Q ss_pred hcchhhhh--------hHhhhhHHhHHhHHHHHhhhhhh
Q 018658 153 NSSLKEHE--------DRVTRLGQQLDNLQKDLQARESS 183 (352)
Q Consensus 153 ~~sLkEhE--------~rV~~lgeQLd~LqkdLqARE~S 183 (352)
.-..|++ .|++++-.++...++-+..|+--
T Consensus 84 -~~~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~K 121 (224)
T cd07591 84 -ETVKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHK 121 (224)
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 2233343 36677778888888888777654
No 95
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.15 E-value=1.5e+02 Score=25.34 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=20.1
Q ss_pred chhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHH
Q 018658 155 SLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDE 190 (352)
Q Consensus 155 sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDe 190 (352)
.+.+...+.+.+-++|+.++++...-..--..+++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655544444444433
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.12 E-value=3.6e+02 Score=29.30 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=68.3
Q ss_pred HHHHHHhhhhhhhhhHhHhhhHhhHHhHHHH---HH----HHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhh
Q 018658 108 EKYLMQLDGLRSQLAATKATADASAASAQSA---QL----QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQAR 180 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~tqaTAeaSA~SAqsa---ql----qCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqAR 180 (352)
++-+++|+.++......+.+|+.-|.==..+ |= -|-.++..++.+.-.|.+-| ....+.|+.++..++.=
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE---r~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE---REFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776555321111 11 13334444443333333333 12223333333333333
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhh
Q 018658 181 ESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAH 252 (352)
Q Consensus 181 E~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaH 252 (352)
..|-.|+|.-.-+-+..|- .+....+.. -..|...-+.|...|.=..++|+.+..+|+=|..|
T Consensus 652 ~~si~~lk~k~~~Q~~~i~---~~~~~~~~s------~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 652 KASIEQLKKKLDYQQRQIE---SQKSPKKKS------IVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccccccCCC------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444443333232221 111111111 13577788999999999999999999999877765
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.87 E-value=5.5e+02 Score=31.40 Aligned_cols=254 Identities=23% Similarity=0.275 Sum_probs=135.6
Q ss_pred HhHHHHHHHHHHHHHhhh----hhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHH----HHHH
Q 018658 42 KNVVSLAAELKEVRTRLA----SQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK----YLMQ 113 (352)
Q Consensus 42 rNVvslAaELK~~R~rLa----sQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek----~l~e 113 (352)
..+-+|-+|....+..|. .++.+---++.+|+--|.+.+.++.++.+|.+.|+++..+++.....-++ |..-
T Consensus 766 ~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~ 845 (1822)
T KOG4674|consen 766 QELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL 845 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344455555555555443 23333444667888888999999999999999999999999998877665 4455
Q ss_pred hhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhh-hhcc-----------hhhhhhHhhhhHHhHHhHHHHHhhhh
Q 018658 114 LDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-KNSS-----------LKEHEDRVTRLGQQLDNLQKDLQARE 181 (352)
Q Consensus 114 Ld~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~e-K~~s-----------LkEhE~rV~~lgeQLd~LqkdLqARE 181 (352)
+|.+-+-+.-+..--..----......+-..|-|+|-. +..- ..--++-+...-+|...|...|....
T Consensus 846 i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~ 925 (1822)
T KOG4674|consen 846 VDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDAL 925 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443322211100000011222233333333321 1111 11112223344455555566666666
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHH
Q 018658 182 SSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELE 261 (352)
Q Consensus 182 ~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELE 261 (352)
.--.|+++++...|.-+..- .+++-+...++..+=-...+++-.+ -++|..|+++|-.++.--.+=+|..|
T Consensus 926 s~i~~yqe~~~s~eqsl~~~--------ks~lde~~~~~ea~ie~~~~k~tsl-E~~ls~L~~~~~~l~~e~~~~~k~~e 996 (1822)
T KOG4674|consen 926 SQIREYQEEYSSLEQSLESV--------KSELDETRLELEAKIESLHKKITSL-EEELSELEKEIENLREELELSTKGKE 996 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccchh
Confidence 66667777777776655433 3334444433333322333333333 35677777777777776666666666
Q ss_pred HHHHHhHh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 018658 262 SQLEKQRR--------------ADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDK 304 (352)
Q Consensus 262 sQlekqrR--------------~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDk 304 (352)
.++...-+ +.-+.-+..-.+=.|+..-..+.++.|.--|++-.
T Consensus 997 ~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~ 1053 (1822)
T KOG4674|consen 997 DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELV 1053 (1822)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543322 12222233344556666666666666665555543
No 98
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.42 E-value=5.2 Score=41.51 Aligned_cols=42 Identities=31% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 018658 274 LKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAA 315 (352)
Q Consensus 274 LKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~ 315 (352)
+...+.+++--+...-...++|+|..----|-+.-||.||..
T Consensus 383 l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s 424 (722)
T PF05557_consen 383 LLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKS 424 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444544433333334456777765
No 99
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.35 E-value=1.7e+02 Score=31.82 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=58.1
Q ss_pred cHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhH
Q 018658 106 TAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQK 185 (352)
Q Consensus 106 stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~Sqk 185 (352)
-.|+|-+|..+|...+++-|+ + |.||-+||+.--...+.|.--.-++++.|..+|.-..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~-~--------------------l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQA-E--------------------LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H--------------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 346689999999888877766 3 3344444444444456666666788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 018658 186 QLKDEVFRIEQDIMQTIA 203 (352)
Q Consensus 186 QLKDeVlRIE~dIm~A~a 203 (352)
|=|+|....|.|.-.|-.
T Consensus 391 qkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987753
No 100
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=50.34 E-value=4.6e+02 Score=30.34 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=89.9
Q ss_pred hhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhH
Q 018658 94 EERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNL 173 (352)
Q Consensus 94 edk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~L 173 (352)
++-|+++.-+-.-+|.--.|+|.|||||+--|..-|+--.-| +|.-.-+.-|+.-...+.--+.-|.+..+=++.+
T Consensus 372 eeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRA----lQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f 447 (1480)
T COG3096 372 EEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRA----IQYQQAIAALERAKELCHLPDLTADSAEEWLETF 447 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhcCccccchhhHHHHHHHH
Confidence 345667766666777777899999999999888776653333 3333333333333333334455555555444444
Q ss_pred HHHHhhhhhhhHhhhHHHHHHHHHH--HHHHHHhcCcchhhH-HHhhhccCchh-HHhhhhhhhcchhHhhhhhhHHHHH
Q 018658 174 QKDLQARESSQKQLKDEVFRIEQDI--MQTIAKAGVNKDCEL-RKLLDEVSPKN-FERINKLLVVKDEEIHKLKDEIKIM 249 (352)
Q Consensus 174 qkdLqARE~SqkQLKDeVlRIE~dI--m~A~akag~~~~~El-~kil~evspkn-fe~in~lL~~kD~eIakLrdeirim 249 (352)
+-. +.-+-.+|+.+|+-. -+| |+..+++--+| -+|.-+||..- |+---.+|---.+. +. .---
T Consensus 448 ~A~-------~e~~Te~lL~Le~kms~s~A-A~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q--~~---~aq~ 514 (1480)
T COG3096 448 QAK-------EEEATEKLLSLEQKMSMAQA-AHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQ--RH---LAEQ 514 (1480)
T ss_pred HHh-------HHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhh--HH---HHHh
Confidence 332 233456688888753 333 34445555554 46677776432 33222222111110 00 1112
Q ss_pred hhhhhhhhHHHHHHHHHhHhhH
Q 018658 250 SAHWKLKTKELESQLEKQRRAD 271 (352)
Q Consensus 250 SaHW~~KTKELEsQlekqrR~d 271 (352)
-+.|..|-.|||.++..|+-+.
T Consensus 515 ~~~lr~~l~eLEqr~~qQqsa~ 536 (1480)
T COG3096 515 VQPLRMRLSELEQRLRQQQSAE 536 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999987664
No 101
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.77 E-value=2.2e+02 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=13.7
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHH
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRT 56 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~ 56 (352)
++..+...+.-++..+-+++...+.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665554433
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=49.47 E-value=1.6e+02 Score=25.29 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=43.2
Q ss_pred cccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHh
Q 018658 24 REIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 24 ~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (352)
.-+-.-|+.+.....+++.-+..|.++=+.++.-+.. +..+...-+........++.++..|+.+.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~----l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVK----LMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777778888888888877777776666654 344444444555555666666666666543
No 103
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.41 E-value=52 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHhhhchHHHHHHHHHHHhhhhh
Q 018658 73 QEAEMKAKNMEDEICKLQKTLEERNG 98 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~Ledk~~ 98 (352)
..++.--+.||+||.+|.++++--++
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~ 141 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEE 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555567889999888887764433
No 104
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=48.16 E-value=34 Score=31.78 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018658 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMG 299 (352)
Q Consensus 254 ~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmg 299 (352)
..|++|+|+|. +||+||=-|+.+|-.+..|.|.+
T Consensus 163 ~~k~~emE~Qv------------~IL~lE~~L~~ar~~L~~lRk~~ 196 (200)
T smart00307 163 EGKTQEMEQQV------------EILKLENELEAARKKLAEIRKQH 196 (200)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999997 59999999999998877766543
No 105
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.03 E-value=78 Score=33.13 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=47.0
Q ss_pred HhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHH-HHHHhh
Q 018658 37 KQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK-YLMQLD 115 (352)
Q Consensus 37 K~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek-~l~eLd 115 (352)
=-.++-+|.-|.+++|++|.+|+.- +..-+.+-.|-.+|+++..+-+.|+.....+..+ +..|.+
T Consensus 54 gDTP~DTlrTlva~~k~~r~~~~~l--------------~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 54 GDTPADTLRTLVAEVKELRKRLAKL--------------ISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence 3478999999999999999998642 2222344456668888888888888776655332 334444
Q ss_pred hhhhh
Q 018658 116 GLRSQ 120 (352)
Q Consensus 116 ~lRsQ 120 (352)
.|.++
T Consensus 120 ql~~~ 124 (472)
T TIGR03752 120 QLKSE 124 (472)
T ss_pred HHHHH
Confidence 44333
No 106
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=44.81 E-value=59 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred HhhhchHHHHHHHHHHHhhhhhhhh
Q 018658 77 MKAKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 77 ~kak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
.+-+.++.++..|-+.||-|.+|+-
T Consensus 50 ~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 50 RKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457799999999999999999974
No 107
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.08 E-value=1.3e+02 Score=26.23 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhh-hHHHHHHhhhchHHHHHHHHHHHhhhh
Q 018658 45 VSLAAELKEVRTRLASQEQCFVKETL-TRQEAEMKAKNMEDEICKLQKTLEERN 97 (352)
Q Consensus 45 vslAaELK~~R~rLasQEq~~~kEt~-tRk~AE~kak~ME~Ei~kLqK~Ledk~ 97 (352)
+++..++-..+..+..-...-...+. ..+.-+.+.+..++||.+|.+.|++++
T Consensus 121 ~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 121 HSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45666666666555432221111111 112233455667788888888887743
No 108
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.47 E-value=5.5e+02 Score=29.00 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=25.9
Q ss_pred hhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhc
Q 018658 163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG 206 (352)
Q Consensus 163 V~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag 206 (352)
...+-.+++.++..++++. .+++.+.-.++.+.-..++..|
T Consensus 727 ~~~~d~~i~~i~~~i~~~~---~~~~~~~~~le~~~~~eL~~~G 767 (1201)
T PF12128_consen 727 EAELDEQIEQIKQEIAAAK---QEAKEQLKELEQQYNQELAGKG 767 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666666666654 3466667778888888885554
No 109
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.37 E-value=2.7e+02 Score=25.42 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=30.2
Q ss_pred HHHHHhhhchHHHHHHHHHH-------HhhhhhhhhhhhccHHHHHHHhhhhhhhhhHh
Q 018658 73 QEAEMKAKNMEDEICKLQKT-------LEERNGRLQASACTAEKYLMQLDGLRSQLAAT 124 (352)
Q Consensus 73 k~AE~kak~ME~Ei~kLqK~-------Ledk~~QL~as~~stek~l~eLd~lRsQLs~t 124 (352)
...|...+.+|..|..||.. .++.+-.+...-+.++..-.++.+.+.+-..|
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555553 44455555555566666666676666665544
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.07 E-value=2.5e+02 Score=24.89 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHHhhhhhhhhhHhHhhhH
Q 018658 111 LMQLDGLRSQLAATKATAD 129 (352)
Q Consensus 111 l~eLd~lRsQLs~tqaTAe 129 (352)
..+++.+|.+|..-+.+..
T Consensus 90 r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444433
No 111
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=41.85 E-value=2.4e+02 Score=24.69 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=45.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhcccccc
Q 018658 270 ADQELKKRV-LKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQDAHVGT 324 (352)
Q Consensus 270 ~dQELKKrV-lKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~KQ~~~~~~~ 324 (352)
+-.+|+++. ..+|--.=.-=+++|-||.+-+-.-.-|+.|.-.++.+...|.+++
T Consensus 83 ~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~pC 138 (146)
T PF08702_consen 83 YSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEPC 138 (146)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTB
T ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 455677776 7777777677788999999999988899999999999999887664
No 112
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=41.69 E-value=4e+02 Score=27.18 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=50.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhh----hhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh-------hhhccHH
Q 018658 40 FRKNVVSLAAELKEVRTRLASQ----EQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ-------ASACTAE 108 (352)
Q Consensus 40 fRrNVvslAaELK~~R~rLasQ----Eq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~-------as~~ste 108 (352)
++--+..+.+|++.-|.+|..- ...|.-++..+..-.-+.++|.+-+..|...+...++-.. ..+...+
T Consensus 114 lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 114 LKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 3444555777877777777664 4444444444444333446666666655554443333221 1122222
Q ss_pred -----------------HHHHHhhhhhhhhhHhHhhhHhh
Q 018658 109 -----------------KYLMQLDGLRSQLAATKATADAS 131 (352)
Q Consensus 109 -----------------k~l~eLd~lRsQLs~tqaTAeaS 131 (352)
.|+.+.+++-.++...++..+..
T Consensus 194 ~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~ 233 (511)
T PF09787_consen 194 IERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESE 233 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 36667777777777777666543
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.61 E-value=1.2e+02 Score=26.01 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=17.9
Q ss_pred cchhHhhhhhhHHHHHhhhhhhhh
Q 018658 234 VKDEEIHKLKDEIKIMSAHWKLKT 257 (352)
Q Consensus 234 ~kD~eIakLrdeirimSaHW~~KT 257 (352)
+..+|+.++.++..-+-.+|+-|-
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888887654
No 114
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=39.96 E-value=6.6e+02 Score=29.22 Aligned_cols=198 Identities=26% Similarity=0.373 Sum_probs=93.9
Q ss_pred hhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchh
Q 018658 78 KAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (352)
Q Consensus 78 kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLk 157 (352)
..-.+|++|.-++|.+.+.-+.+.... .+.++-.+|-.-++ +-.-+.+.| .-++|+.-....+
T Consensus 229 ~i~~~~e~i~~l~k~i~e~~e~~~~~~--------~~e~~~~~l~~Lk~-------k~~W~~V~~--~~~ql~~~~~~i~ 291 (1074)
T KOG0250|consen 229 LIDLKEEEIKNLKKKIKEEEEKLDNLE--------QLEDLKENLEQLKA-------KMAWAWVNE--VERQLNNQEEEIK 291 (1074)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHH
Confidence 344566777777777777666665432 22222222222111 111122222 2234444444444
Q ss_pred hhhhHhhhhHHhHHhHH-------HHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhh
Q 018658 158 EHEDRVTRLGQQLDNLQ-------KDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINK 230 (352)
Q Consensus 158 EhE~rV~~lgeQLd~Lq-------kdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~ 230 (352)
--+.++..+-+-++..+ ..+..-|-.--+++|||-.--..|+.|.+-+..- +....++- ++||.
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~-----~re~~~~~----~~~~~ 362 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL-----RREVNDLK----EEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHH----HHHHH
Confidence 44555555555544433 3333445555667777666666666655433210 00000000 00000
Q ss_pred hhhcchhHhhhhhhHHHHH---hhhhhhhh-HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhh
Q 018658 231 LLVVKDEEIHKLKDEIKIM---SAHWKLKT-KELESQLEKQRRADQELKKRVLKLEFCLQEARAQT----RKLQRMGERR 302 (352)
Q Consensus 231 lL~~kD~eIakLrdeirim---SaHW~~KT-KELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQt----rKlqrmgErR 302 (352)
.--.|.+++++++.+ =+|.+..| +++.+++++-.-----|++.|-+||--+-.-|... .++-.++|..
T Consensus 363 ----~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 363 ----IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111233444443333 24555555 88888888777777778888888877443333333 3444566665
Q ss_pred hHH
Q 018658 303 DKA 305 (352)
Q Consensus 303 Dka 305 (352)
+..
T Consensus 439 ~~i 441 (1074)
T KOG0250|consen 439 EHI 441 (1074)
T ss_pred HHH
Confidence 443
No 115
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.77 E-value=1.8e+02 Score=33.72 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCccccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHH
Q 018658 11 STSSSSSSSSVPAREIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQ 90 (352)
Q Consensus 11 ~~~~~~~sss~~~~elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLq 90 (352)
|.+.+++-+||+.... +|--.|+.||-+++.++.--+|-+-.-+.+=..-+.-.--||-||.+|+
T Consensus 154 s~s~~~~~~sp~~~~~---------------~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klr 218 (1195)
T KOG4643|consen 154 SRSGKELYKSPYDIVV---------------KKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLR 218 (1195)
T ss_pred cccCCCCCCCcchhhc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhccHHHHHHHhhhhhhh
Q 018658 91 KTLEERNGRLQASACTAEKYLMQLDGLRSQ 120 (352)
Q Consensus 91 K~Ledk~~QL~as~~stek~l~eLd~lRsQ 120 (352)
-..++ +..-+-++..|..|||.||-+
T Consensus 219 qe~~e----~l~ea~ra~~yrdeldalre~ 244 (1195)
T KOG4643|consen 219 QEIEE----FLDEAHRADRYRDELDALREQ 244 (1195)
T ss_pred HHHHH----HHHHHHhhhhhhhHHHHHHHh
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=39.00 E-value=5.6e+02 Score=28.12 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=41.0
Q ss_pred hHHhhhhhhhcchhHhhhhhhHHHHHh-------hhhhhhhHHHHHHHHHhHhhHHHHHHH
Q 018658 224 NFERINKLLVVKDEEIHKLKDEIKIMS-------AHWKLKTKELESQLEKQRRADQELKKR 277 (352)
Q Consensus 224 nfe~in~lL~~kD~eIakLrdeirimS-------aHW~~KTKELEsQlekqrR~dQELKKr 277 (352)
+++..+..|+-||.+|++|-.+|.=+- ..|+.--.-||.|+..-+-+-.|||++
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~k 339 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEK 339 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778889999999999986543 347777788888888877777777664
No 117
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.71 E-value=2.6e+02 Score=24.16 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhH
Q 018658 133 ASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQL 170 (352)
Q Consensus 133 ~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQL 170 (352)
..+++-|=-=+.|++.+++|+..+|. |...||+..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~---rLk~LG~eV 114 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKE---RLKELGEEV 114 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHH---HHHHcCCCc
Confidence 45677777788899999999987764 566666654
No 118
>PRK00106 hypothetical protein; Provisional
Probab=38.63 E-value=2.6e+02 Score=29.47 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=7.3
Q ss_pred cccccccccc
Q 018658 324 TEKQNFWETS 333 (352)
Q Consensus 324 ~~kqnfWess 333 (352)
+..||+|+-|
T Consensus 346 sy~qnl~~HS 355 (535)
T PRK00106 346 SYGQNVLRHS 355 (535)
T ss_pred cCCCcHHHHH
Confidence 5667888866
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.22 E-value=3e+02 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhHH
Q 018658 39 SFRKNVVSLAAELKEVRTRLASQEQCFV 66 (352)
Q Consensus 39 sfRrNVvslAaELK~~R~rLasQEq~~~ 66 (352)
+.|-=+-.|-+||.+++.+|+...+.+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4555556677889999999988776655
No 120
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.86 E-value=7.1e+02 Score=28.98 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 018658 289 RAQTRKLQRMGERRDKAIKELRDQLAA 315 (352)
Q Consensus 289 RsQtrKlqrmgErRDkalKElrdq~a~ 315 (352)
+.++-|+-..|..=..+|.++..+-..
T Consensus 464 ~~k~dkvs~FG~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 464 KTKTDKVSAFGPNMPQLLRAIERRKRR 490 (1074)
T ss_pred hcccchhhhcchhhHHHHHHHHHHHhc
Confidence 468889999998888889999887766
No 121
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=37.76 E-value=2.5e+02 Score=29.71 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred ccccccchhHHH
Q 018658 330 WETSGFKIVVSM 341 (352)
Q Consensus 330 Wess~FKivvSM 341 (352)
|=+.+|-.+|-|
T Consensus 341 ~~~~pFe~iv~~ 352 (759)
T PF01496_consen 341 KFTKPFEMIVDM 352 (759)
T ss_dssp ------------
T ss_pred hhhhHHHHHHHh
Confidence 344555555543
No 122
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.74 E-value=30 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHhhhccCchhHHhhhhhhhcchhHhhhhhh
Q 018658 214 RKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (352)
Q Consensus 214 ~kil~evspknfe~in~lL~~kD~eIakLrd 244 (352)
-.+.++||++....+-+.|.++|.+|...+.
T Consensus 3 ~~v~~~v~~~~Wk~laR~LGls~~~I~~ie~ 33 (79)
T cd08784 3 FDVFEEVPFDQHKRFFRKLGLSDNEIKVAEL 33 (79)
T ss_pred HHHHHHCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678999999999999999999999987653
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.63 E-value=2.9e+02 Score=24.47 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=78.8
Q ss_pred hhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHH
Q 018658 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (352)
Q Consensus 30 LkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek 109 (352)
||----++-+|...|-+|=+||..+..-+.. ...+.+| +..-+-+|+.+|+.+-..|.+-...|.+-.+--+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~----~~~daEn---~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKEC----LILDAEN---SKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHH----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788888899999998876654322 2233333 11223458888888888888877777766655555
Q ss_pred HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhh-hhcchhhhhhHhhhhHHhHHhH
Q 018658 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDE-KNSSLKEHEDRVTRLGQQLDNL 173 (352)
Q Consensus 110 ~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~e-K~~sLkEhE~rV~~lgeQLd~L 173 (352)
.-.+|.....+++-- .+...-|..+++.+-. |.--..++...|..|..||..|
T Consensus 85 L~k~lq~~q~kv~eL-----------E~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 85 LDKELQKKQEKVSEL-----------ESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667777776665533 2334456666666543 4444455666676666666655
No 124
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=37.45 E-value=2.2e+02 Score=22.87 Aligned_cols=87 Identities=20% Similarity=0.343 Sum_probs=59.3
Q ss_pred hchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhh
Q 018658 80 KNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEH 159 (352)
Q Consensus 80 k~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEh 159 (352)
..++..+..=.+.|.++..+|..+...-++|+.+-+.=|.. |.-.|........++-.-++.|......|+
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~r-------A~k~a~~e~k~~~~k~~ei~~l~~~l~~l~-- 94 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRER-------AEKRAEEEKKKKEEKEAEIKKLKAELEELK-- 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34556666677888999999999999999999988765432 344445555566666666666666666555
Q ss_pred hhHhhhhHHhHHhHHHH
Q 018658 160 EDRVTRLGQQLDNLQKD 176 (352)
Q Consensus 160 E~rV~~lgeQLd~Lqkd 176 (352)
....++.+.+..+++|
T Consensus 95 -~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 95 -SEISKLEEKLEEYKKY 110 (126)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3456666666666554
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.08 E-value=2.8e+02 Score=24.05 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=46.2
Q ss_pred hhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHH-HhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHH
Q 018658 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVK-ETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAE 108 (352)
Q Consensus 30 LkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~k-Et~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~ste 108 (352)
+.+|..|-..+=..|-.+-..|+++...+..-+..+.. |+.+ .|..-||+|+-...+.|.+-.+.|+-....++
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~-----rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN-----RRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444445555555555555555555544444432 3333 34456777777777777777777776666666
Q ss_pred HHHHHhhh
Q 018658 109 KYLMQLDG 116 (352)
Q Consensus 109 k~l~eLd~ 116 (352)
.|-+-+..
T Consensus 112 ~~eRkv~~ 119 (143)
T PF12718_consen 112 HFERKVKA 119 (143)
T ss_pred HHHHHHHH
Confidence 65544333
No 126
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=36.55 E-value=2.4e+02 Score=25.06 Aligned_cols=71 Identities=21% Similarity=0.367 Sum_probs=46.9
Q ss_pred hhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhh
Q 018658 29 LLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQA 102 (352)
Q Consensus 29 LLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~a 102 (352)
.|.+|...=..+..+|-.+..+|++-|.+|..=...|..-. ..+........-+|..|++.+++-++++.+
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~---~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDV---DELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 35667777777888888888888888888888877776433 224444455556677777777666665544
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.37 E-value=60 Score=30.32 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhh
Q 018658 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (352)
Q Consensus 55 R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQL 121 (352)
..|++..|+.+..-+..--+-......|..||.+|.-.+|+-+.+|.--.----.+..+||.+.+++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3666666766654444334456677888999999999999888888776665555777899877655
No 128
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.26 E-value=3.6e+02 Score=25.03 Aligned_cols=103 Identities=16% Similarity=0.312 Sum_probs=65.4
Q ss_pred hhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcch
Q 018658 157 KEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKD 236 (352)
Q Consensus 157 kEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD 236 (352)
|-+|-.+.++..|+++|..-+-+=|.++ +..++++|+..+ +..|.+++.+++ +++|..++.==.
T Consensus 77 K~~E~ql~q~~~ql~nLEq~~~~iE~a~---------~~~ev~~aLk~g----~~aLK~~~k~~~---idkVd~lmDei~ 140 (191)
T PTZ00446 77 KLYEQEIENILNNRLTLEDNMINLENMH---------LHKIAVNALSYA----ANTHKKLNNEIN---TQKVEKIIDTIQ 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH----HHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 3477888999999999999888888774 688999998665 456788888885 555555443222
Q ss_pred hHhhhhhhHH-HHHhhh--hhhhhHHHHHHHHHhHhhHHHHHHHH
Q 018658 237 EEIHKLKDEI-KIMSAH--WKLKTKELESQLEKQRRADQELKKRV 278 (352)
Q Consensus 237 ~eIakLrdei-rimSaH--W~~KTKELEsQlekqrR~dQELKKrV 278 (352)
|.++ .-+|| .+||.. =..--.|||..|+.-- .++|-.++
T Consensus 141 E~~e-~~~EIseaLs~~~~~~~DEdELe~ELe~Le--~e~l~~~l 182 (191)
T PTZ00446 141 ENKD-IQEEINQALSFNLLNNVDDDEIDKELDLLK--EQTMEEKL 182 (191)
T ss_pred HHHH-HHHHHHHHHcCCCCCCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 3332 23344 455533 1123367777776432 35555554
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.08 E-value=4.6e+02 Score=26.24 Aligned_cols=142 Identities=23% Similarity=0.320 Sum_probs=84.5
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHH----------hhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhh
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRT----------RLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~----------rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
-+.++-..+-+++.++-.|.-++-. || .+|.++.==...+...- .-.+=+|-.-|+.+|..-.+...
T Consensus 137 k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL-N~ELn~~L~g~~~rivD--IDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 137 KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL-NHELNYILNGDENRIVD--IDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999888877642 33 33333321111111110 12233445556665555555555
Q ss_pred hhhccHHHHHHHhhhhhhhhhHhHhh----------------------------hHhhHHhHHHHHHHHHHHhhhhhhhh
Q 018658 102 ASACTAEKYLMQLDGLRSQLAATKAT----------------------------ADASAASAQSAQLQCLALVKELDEKN 153 (352)
Q Consensus 102 as~~stek~l~eLd~lRsQLs~tqaT----------------------------AeaSA~SAqsaqlqCl~L~keL~eK~ 153 (352)
-.-++..||-.=||.=|+. ..++.. -.++++|+.--+.-|.+|+.-+||||
T Consensus 214 l~k~~i~KYK~~le~k~~~-~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~ 292 (319)
T PF09789_consen 214 LLKQTINKYKSALERKRKK-GIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKN 292 (319)
T ss_pred HHHHHHHHHHHHHHhhccc-cccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHH
Confidence 5666777787777742221 111110 12455566777888999999999999
Q ss_pred cchhhhhhHhhh-hHHhHHhHHHHHh
Q 018658 154 SSLKEHEDRVTR-LGQQLDNLQKDLQ 178 (352)
Q Consensus 154 ~sLkEhE~rV~~-lgeQLd~LqkdLq 178 (352)
-.|. |--+.|+ ||-.+-.|.+-|+
T Consensus 293 ~al~-Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 293 LALQ-HQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9985 7777766 5777777776654
No 130
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=35.84 E-value=2.1e+02 Score=26.83 Aligned_cols=32 Identities=41% Similarity=0.691 Sum_probs=19.7
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhH
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQR 268 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqr 268 (352)
+.||.+|+++.++| .--.++.+||+...+..+
T Consensus 103 ~~kd~~i~~~~~~l----~~~~~r~~el~~~r~~e~ 134 (196)
T PF15272_consen 103 IEKDREIRTLQDEL----LSLELRNKELQNERERER 134 (196)
T ss_pred HHhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Confidence 34677788877777 333566666666555433
No 131
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.50 E-value=51 Score=30.27 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=25.1
Q ss_pred hhHhhhhhhHHHHH------hhhhhhhhHHHHHHHHHh
Q 018658 236 DEEIHKLKDEIKIM------SAHWKLKTKELESQLEKQ 267 (352)
Q Consensus 236 D~eIakLrdeirim------SaHW~~KTKELEsQlekq 267 (352)
++||++|.++|..| +..|++|.-.|+++|+.-
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777655 678999999999999863
No 132
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.09 E-value=1.5e+02 Score=31.11 Aligned_cols=62 Identities=26% Similarity=0.221 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHhhhH--HHHHHhh-----hchHHHHHHHHHHHhhhhhhhhhhhccHHHHH
Q 018658 49 AELKEVRTRLASQEQCFVKETLTR--QEAEMKA-----KNMEDEICKLQKTLEERNGRLQASACTAEKYL 111 (352)
Q Consensus 49 aELK~~R~rLasQEq~~~kEt~tR--k~AE~ka-----k~ME~Ei~kLqK~Ledk~~QL~as~~stek~l 111 (352)
+-|-+++.+||-+|+-...=+..+ .+||.++ --.|-|+.+||+..-+.|+...+ ..+|++|+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-~~a~~~~~ 81 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR-EEATEKTL 81 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345677777877776544333322 4455543 34688999999999999998877 67777776
No 133
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.54 E-value=9e+02 Score=29.22 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=9.3
Q ss_pred HHHhhhchHHHHHHHHHHHh
Q 018658 75 AEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Le 94 (352)
||..+-++-.-+.+|.+.++
T Consensus 1610 aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 134
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.36 E-value=3.8e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.453 Sum_probs=28.6
Q ss_pred hHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHH
Q 018658 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKR 277 (352)
Q Consensus 237 ~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKr 277 (352)
.|++.|++++.=+...|..++.++...++.-.-.-.+|+..
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888877766643333344433
No 135
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.61 E-value=3e+02 Score=23.43 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=50.7
Q ss_pred ccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHH
Q 018658 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTL 93 (352)
Q Consensus 25 elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~L 93 (352)
+.......|...+..+-+.+.....-|...+.-+...|..+.++...-+.=+.+++..+.|+.+..+.+
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445566677777777776666666677888888888888888888888888888888877766654
No 136
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.60 E-value=4.8e+02 Score=25.79 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHhh
Q 018658 40 FRKNVVSLAAELKEVRTRL 58 (352)
Q Consensus 40 fRrNVvslAaELK~~R~rL 58 (352)
-|+..+..|..|-+++.+|
T Consensus 46 Ar~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444444555555555444
No 137
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.45 E-value=4.8e+02 Score=25.67 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=41.4
Q ss_pred hhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhh
Q 018658 79 AKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKE 158 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkE 158 (352)
--+|=-+|.-|...|++..+++--.--..+.=..++.-++-..... +.++-.|-.+|.+++..+.+
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L--------------~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL--------------REELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888877766443333333334444444433322 33445556667777777777
Q ss_pred hhhHhh
Q 018658 159 HEDRVT 164 (352)
Q Consensus 159 hE~rV~ 164 (352)
|..=++
T Consensus 173 hGlVlv 178 (302)
T PF09738_consen 173 HGLVLV 178 (302)
T ss_pred CCeeeC
Confidence 776543
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.19 E-value=4.5e+02 Score=28.02 Aligned_cols=110 Identities=25% Similarity=0.236 Sum_probs=55.5
Q ss_pred hhhhhHhhhhHH-hHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccC-chhHH-hhhhhhh
Q 018658 157 KEHEDRVTRLGQ-QLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVS-PKNFE-RINKLLV 233 (352)
Q Consensus 157 kEhE~rV~~lge-QLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evs-pknfe-~in~lL~ 233 (352)
+-.|..+.++.. ||.|...++..+----++|+- +.+|+++..++-..+--.+..-+.++. -++++ .+|+.|
T Consensus 335 ~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~-----~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l- 408 (493)
T KOG0804|consen 335 KYYEQIMSEYEQSQLENQKQYYELLITEADSLKQ-----ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL- 408 (493)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334456666666 888888777654333233332 344455544443222222222222211 11111 222222
Q ss_pred cchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018658 234 VKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKL 295 (352)
Q Consensus 234 ~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKl 295 (352)
+... --|..|-|++|.++...+++-+| -+|+-..|+|-|
T Consensus 409 ---------~knq----~vw~~kl~~~~e~~~~~~~s~d~----------~I~dLqEQlrDl 447 (493)
T KOG0804|consen 409 ---------IKNQ----DVWRGKLKELEEREKEALGSKDE----------KITDLQEQLRDL 447 (493)
T ss_pred ---------HhhH----HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhH
Confidence 2222 24999999999998888776543 455556666654
No 139
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=33.02 E-value=2.4e+02 Score=29.53 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=52.8
Q ss_pred HHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhH
Q 018658 55 RTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (352)
Q Consensus 55 R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tq 125 (352)
..++..--+.|.+|-. ..-.+.+.++..|.+|+.+.++-..+|.++...|..++.+.+.|+.|...+.
T Consensus 26 E~~~l~~~~~~L~~f~---~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFS---PVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554443 3556788999999999999999999999999999999999999999876554
No 140
>PRK11519 tyrosine kinase; Provisional
Probab=32.90 E-value=6.2e+02 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHhhhchHHHHHHHHHHHhhhhhhhhhhh---------ccHHHHHHHhhhhhhhhhH
Q 018658 76 EMKAKNMEDEICKLQKTLEERNGRLQASA---------CTAEKYLMQLDGLRSQLAA 123 (352)
Q Consensus 76 E~kak~ME~Ei~kLqK~Ledk~~QL~as~---------~stek~l~eLd~lRsQLs~ 123 (352)
..-..-+++++..+++.|++-...|.+.- ..++.++..+.++++|+..
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666666655544443321 1233355556666666554
No 141
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.77 E-value=4.3e+02 Score=24.97 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=80.5
Q ss_pred HHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhh
Q 018658 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQL 187 (352)
.+=.+|+=.||.||--+++..+++-. ++..|-..++.|+-.|..++..+.+.....+ .|
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~~l~~~~~-------~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~--------------lL 85 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRAELRNKES-------QIQELQDSLRTKQLELEVCENELQRKKNEAE--------------LL 85 (202)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH--------------Hh
Confidence 34567788888888777665554432 3333334455566555555554444333333 34
Q ss_pred hHHHHHHHHHHH---HHHHHhcC-cchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHH
Q 018658 188 KDEVFRIEQDIM---QTIAKAGV-NKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQ 263 (352)
Q Consensus 188 KDeVlRIE~dIm---~A~akag~-~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQ 263 (352)
++-|-.+|.+|. ++++.+|. ..+|-.....+++-+..-. =-.-+.--..++.+|+.||...--+ -.+.-+-
T Consensus 86 rekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~-~~~~~~~l~~e~erL~aeL~~er~~----~e~q~~~ 160 (202)
T PF06818_consen 86 REKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQA-GEDELGSLRREVERLRAELQRERQR----REEQRSS 160 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhcc-ccccchhHHHHHHHHHHHHHHHHHh----HHHHHHH
Confidence 444445554443 22322221 1111111111111000000 0000111235677788777765433 2334455
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018658 264 LEKQRRADQELKKRVLKLEFCLQEARAQT 292 (352)
Q Consensus 264 lekqrR~dQELKKrVlKLEfcLqEaRsQt 292 (352)
.+--|++=+|=|-||++--==||-.--|+
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~nYvqM 189 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQNYVQM 189 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67779999999999999877777666554
No 142
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=32.67 E-value=3.9e+02 Score=24.38 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHhhhHHH-HHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHH-HHHHHhhhhhhhhhHhHh
Q 018658 49 AELKEVRTRLASQEQCFVKETLTRQE-AEMKAKNMEDEICKLQKTLEERNGRLQASACTAE-KYLMQLDGLRSQLAATKA 126 (352)
Q Consensus 49 aELK~~R~rLasQEq~~~kEt~tRk~-AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~ste-k~l~eLd~lRsQLs~tqa 126 (352)
.=|.-+..++..-+..+..|...|+. -+.+...|-+-|++|.+.|+....+=.-+.-... .|-..+.++...+..--.
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888899999888854 4578899999999999988754333222222222 233555555544332211
Q ss_pred hhH-hhHHhHHHHHHHHHHHhhhhhhhhcchh-hhhhHhhhhHHhHHhHHHHHhh----h---hhh-hHhhhHHHHHHHH
Q 018658 127 TAD-ASAASAQSAQLQCLALVKELDEKNSSLK-EHEDRVTRLGQQLDNLQKDLQA----R---ESS-QKQLKDEVFRIEQ 196 (352)
Q Consensus 127 TAe-aSA~SAqsaqlqCl~L~keL~eK~~sLk-EhE~rV~~lgeQLd~LqkdLqA----R---E~S-qkQLKDeVlRIE~ 196 (352)
+-- .-..+-.+-.--|-.|-..+.+-...+. .=+..-..|+.+|..|+..+.. | |-. -+.|.|++.+|..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111112222334444444333111111 1122223445555555444332 2 211 1234444555444
Q ss_pred HHHHHHHHhcCcchhhHHHhhhccCchhHHhh-hhhhhcchhHhhhhhhHHHH
Q 018658 197 DIMQTIAKAGVNKDCELRKLLDEVSPKNFERI-NKLLVVKDEEIHKLKDEIKI 248 (352)
Q Consensus 197 dIm~A~akag~~~~~El~kil~evspknfe~i-n~lL~~kD~eIakLrdeiri 248 (352)
-|-... ......-.+|...+++|.- +-++- .++-+.==+||+-|++.|-.
T Consensus 165 ~i~~Ek-~~Re~~~~~l~~~le~~~~-~~~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 165 KIEKEK-NTRESKLSELRSELEEVKR-RREKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 442221 1222344556666665542 11111 12233334677777777654
No 143
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.42 E-value=6e+02 Score=26.55 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=10.7
Q ss_pred HHhhhhhhhhhHhHh
Q 018658 112 MQLDGLRSQLAATKA 126 (352)
Q Consensus 112 ~eLd~lRsQLs~tqa 126 (352)
.+|.++.+||+.+++
T Consensus 237 ~~L~~l~~ql~~a~~ 251 (754)
T TIGR01005 237 QQLAELNTELSRARA 251 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777664
No 144
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=32.24 E-value=2.7e+02 Score=23.18 Aligned_cols=57 Identities=33% Similarity=0.442 Sum_probs=33.0
Q ss_pred hHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHH---HHHHHH
Q 018658 237 EEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERR--DKA---IKELRD 311 (352)
Q Consensus 237 ~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErR--Dka---lKElrd 311 (352)
+|...|++||+||.+ |+|+|= +|++.-.=-..-|-|++.||-+.+.+ +.. |-+|++
T Consensus 24 ~e~~~L~eEI~~Lr~-----------qve~nP--------evtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 24 EENEALKEEIQLLRE-----------QVEHNP--------EVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhCH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 556899999999764 555553 24444333334455666666665533 333 555666
Q ss_pred H
Q 018658 312 Q 312 (352)
Q Consensus 312 q 312 (352)
|
T Consensus 85 ~ 85 (86)
T PF12711_consen 85 Q 85 (86)
T ss_pred h
Confidence 5
No 145
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.16 E-value=5.1e+02 Score=25.57 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=15.3
Q ss_pred hhchHHHHHHHHHHHhhhhhhhh
Q 018658 79 AKNMEDEICKLQKTLEERNGRLQ 101 (352)
Q Consensus 79 ak~ME~Ei~kLqK~Ledk~~QL~ 101 (352)
...||.+|..|.+.+.++.+.|.
T Consensus 274 i~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 274 IAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 34566677777777777776654
No 146
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.08 E-value=2.9e+02 Score=30.70 Aligned_cols=121 Identities=31% Similarity=0.425 Sum_probs=82.0
Q ss_pred HHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhc----CcchhhHHHhhhc
Q 018658 144 ALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAG----VNKDCELRKLLDE 219 (352)
Q Consensus 144 ~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag----~~~~~El~kil~e 219 (352)
.+.-+++++..++-+.|++-..|---+..+.+|.+-=+.--+.++.+-..--.-|.+.-++-. .+--++|.
T Consensus 700 ~~s~~~~~~~~~~~~~E~~~~~LR~~~EL~~~~~~~L~~~~~~~~~~~~~~K~~i~E~~~~~~~~~~N~SK~~L~----- 774 (852)
T KOG4787|consen 700 SKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKESIFETEREKMNGERNRSKNELA----- 774 (852)
T ss_pred cccchhhhhhhccccccccHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHhcCcccccHHHHH-----
Confidence 456678999999999999999999999999999988877777776653333333333322221 12223332
Q ss_pred cCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHH---HHHHhHhhHHHHHH
Q 018658 220 VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELES---QLEKQRRADQELKK 276 (352)
Q Consensus 220 vspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEs---QlekqrR~dQELKK 276 (352)
-|.++-..-.+-+.+|-|+..-+-+.|+.+-.-+|+ ||.|+---..|+++
T Consensus 775 -------s~~~~~~~AE~~~K~L~~~~~~~~~~~~~~~~~~~~~~~~L~K~~~~E~E~~~ 827 (852)
T KOG4787|consen 775 -------AMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQLPDEHEMKE 827 (852)
T ss_pred -------HhhcchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 233333334456778889999999999988777775 66666666666654
No 147
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.07 E-value=3.5e+02 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=11.4
Q ss_pred HHHHHHhHhhHHHHHHHHHHH
Q 018658 261 ESQLEKQRRADQELKKRVLKL 281 (352)
Q Consensus 261 EsQlekqrR~dQELKKrVlKL 281 (352)
+-.|+.....-.+|+++...|
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 487 EKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666665443
No 148
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=31.82 E-value=1.4e+02 Score=29.17 Aligned_cols=68 Identities=32% Similarity=0.410 Sum_probs=40.9
Q ss_pred hhhhhhhcchhHhhhhh----------hHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 018658 227 RINKLLVVKDEEIHKLK----------DEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQT-RKL 295 (352)
Q Consensus 227 ~in~lL~~kD~eIakLr----------deirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQt-rKl 295 (352)
+|=+||..||+|+.+|- .+|+. ||..+||+-+--|.|.|-+---|..|--|=-|- .||
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~-----------Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKL 115 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRT-----------LEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKL 115 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999987652 33444 444466666667777776666666554443333 356
Q ss_pred HHhhhhhhHH
Q 018658 296 QRMGERRDKA 305 (352)
Q Consensus 296 qrmgErRDka 305 (352)
.-|.+-+.++
T Consensus 116 ksi~~A~krp 125 (272)
T KOG4552|consen 116 KSIKEAEKRP 125 (272)
T ss_pred HHHHHHhcCC
Confidence 5555555444
No 149
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.71 E-value=7.5e+02 Score=27.45 Aligned_cols=249 Identities=22% Similarity=0.334 Sum_probs=125.0
Q ss_pred hHHHHhHHHHhHHHHHHHHHHHHHhhh--hhhhhHH-HHhhhHHHHHHhhh----ch-------HHHHHHHHHHHhhhhh
Q 018658 33 LNEKKQSFRKNVVSLAAELKEVRTRLA--SQEQCFV-KETLTRQEAEMKAK----NM-------EDEICKLQKTLEERNG 98 (352)
Q Consensus 33 L~EKK~sfRrNVvslAaELK~~R~rLa--sQEq~~~-kEt~tRk~AE~kak----~M-------E~Ei~kLqK~Ledk~~ 98 (352)
=..|--+|-||+--|=.|+--.++++. ..+..|. ++-...+-.-...| .. .-|+-.+|..|++.+.
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777777777777777766654 3333343 22222222111111 11 2355556666665554
Q ss_pred h----------hhhhhccHHH----HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhh
Q 018658 99 R----------LQASACTAEK----YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVT 164 (352)
Q Consensus 99 Q----------L~as~~stek----~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~ 164 (352)
| |+.|.+..++ +..++|.||..|.-....-+--.++...++=-=.-+..++++...-+.-.+-.|+
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2333333333 5577777777776555444444444444444444555677776667777777777
Q ss_pred hhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhh
Q 018658 165 RLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKD 244 (352)
Q Consensus 165 ~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrd 244 (352)
.|-..+++|...|.-++ +||..+.-|+-. .+.....-. . .+.|..-+.-++--|.+|++
T Consensus 396 ~Lq~kie~Lee~l~ekd---~ql~~~k~Rl~~-------~~d~~~~~~---~--------~~~lEea~~eker~~e~l~e 454 (775)
T PF10174_consen 396 VLQKKIENLEEQLREKD---RQLDEEKERLSS-------QADSSNEDE---A--------LETLEEALREKERLQERLEE 454 (775)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhc-------cccccchHH---H--------HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777775433 234333333321 111111101 1 13444444444444444431
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhHHHHHH
Q 018658 245 EIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFC-------LQEARAQTRKLQRMGERRDKAIKEL 309 (352)
Q Consensus 245 eirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfc-------LqEaRsQtrKlqrmgErRDkalKEl 309 (352)
-|..=-++.-.+++.++..-++++-.|-.|+-= |=.++..+.+|---+++-|--|+-|
T Consensus 455 -------~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l 519 (775)
T PF10174_consen 455 -------QRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERL 519 (775)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHH
Confidence 234444555566666666666666665555432 2234444445544455444444433
No 150
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.57 E-value=4.7e+02 Score=25.06 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHhhhchHHHHHHHHHHHhhhhhhhhhhhc-----cHH----HHHHHhhhhhhhhhHhHhh
Q 018658 75 AEMKAKNMEDEICKLQKTLEERNGRLQASAC-----TAE----KYLMQLDGLRSQLAATKAT 127 (352)
Q Consensus 75 AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~-----ste----k~l~eLd~lRsQLs~tqaT 127 (352)
+..-..-+++++..+++.|++-..+|.+.-. +++ --...|.++.+|+..+++-
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~ 230 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQ 230 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHH
Confidence 4444556666777777776666665555321 111 1135678888888877654
No 151
>PRK03918 chromosome segregation protein; Provisional
Probab=31.52 E-value=6.3e+02 Score=26.45 Aligned_cols=7 Identities=57% Similarity=0.923 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 018658 307 KELRDQL 313 (352)
Q Consensus 307 KElrdq~ 313 (352)
.++..++
T Consensus 506 ~~l~~~l 512 (880)
T PRK03918 506 KELEEKL 512 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 152
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.49 E-value=3.1e+02 Score=22.95 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=14.2
Q ss_pred hhhhhHhhhhHHhHHhHHHHHh
Q 018658 157 KEHEDRVTRLGQQLDNLQKDLQ 178 (352)
Q Consensus 157 kEhE~rV~~lgeQLd~LqkdLq 178 (352)
.+-+.|+.-|.+|=..|..-|+
T Consensus 108 ~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 108 SELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777766554
No 153
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.42 E-value=7.6e+02 Score=27.42 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHH
Q 018658 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEK 109 (352)
Q Consensus 30 LkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek 109 (352)
|.|+...+-.++.|+.+....=.+...-. ........+-+.+...|+.|-..|.-+|..-..++..+-.--.-
T Consensus 556 LqDv~s~~sEIK~~f~~~ss~e~E~~~~d-------ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E 628 (769)
T PF05911_consen 556 LQDVSSMRSEIKKNFDGDSSSEAEINSED-------EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKE 628 (769)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhH
Q 018658 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189 (352)
Q Consensus 110 ~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKD 189 (352)
.=..|..|+++|..++....+...--+...-.=-.|-..+.+-..-+.+.-..|..|-++|..-....+-=..--..|.+
T Consensus 629 ~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~ 708 (769)
T PF05911_consen 629 SEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEE 708 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Q ss_pred HHHHHHHH
Q 018658 190 EVFRIEQD 197 (352)
Q Consensus 190 eVlRIE~d 197 (352)
+.-|..++
T Consensus 709 el~r~~~~ 716 (769)
T PF05911_consen 709 ELERMKKE 716 (769)
T ss_pred HHHhhhcc
No 154
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=31.18 E-value=3.6e+02 Score=23.51 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhh
Q 018658 42 KNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQL 121 (352)
Q Consensus 42 rNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQL 121 (352)
|.|..|+..+.+ .=++-.+.-.+.+... -.+.|.||.++.++-..+.++...+-..+. .+.+++++-.+|
T Consensus 27 ~~~l~Lc~R~Q~-HL~~cA~~Va~~Q~~L-----~~riKevd~~~~~l~~~~~erqk~~~k~ae----~L~kv~els~~L 96 (131)
T PF10158_consen 27 RPVLRLCSRYQE-HLNQCAEAVAFDQNAL-----AKRIKEVDQEIAKLLQQMVERQKRFAKFAE----QLEKVNELSQQL 96 (131)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 567777777765 2222223333333322 257899999999999999998877655443 566688888888
Q ss_pred hHhHhhhH
Q 018658 122 AATKATAD 129 (352)
Q Consensus 122 s~tqaTAe 129 (352)
..++..=+
T Consensus 97 ~~~~~lL~ 104 (131)
T PF10158_consen 97 SRCQSLLN 104 (131)
T ss_pred HHHHHHHH
Confidence 87776443
No 155
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.06 E-value=2.6e+02 Score=21.92 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhH
Q 018658 47 LAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAATK 125 (352)
Q Consensus 47 lAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tq 125 (352)
|-++....|+||.+ +..+....+.+...|...=.----||.--.....++-.|++.|+-+|.-++
T Consensus 3 Lea~~~~Lr~rLd~--------------~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDS--------------LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555556666644 334444555555555542211122333333344455566666666655443
No 156
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=30.99 E-value=31 Score=23.75 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=6.4
Q ss_pred CCCCCcccccCCCC
Q 018658 4 SGHRSSMSTSSSSS 17 (352)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (352)
+|..||.|||+++|
T Consensus 13 s~n~sSTsts~tt~ 26 (27)
T PF12522_consen 13 SGNNSSTSTSATTP 26 (27)
T ss_pred ccCCccccccccCC
Confidence 34444444444443
No 157
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=30.77 E-value=1.2e+02 Score=29.73 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=41.0
Q ss_pred hhhhhHHHHHhhhhhhhhHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 018658 240 HKLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 240 akLrdeirimSaHW~~KTKELEsQlekqr-R~dQELKKrVlKLEfcLqEaRsQ 291 (352)
..+.++| ..-|..|+..+..|+.-++ ++.-+..-++-+|+..|+-|.++
T Consensus 182 ~~l~~~i---~~~~~~~~~~l~~~~~~~~~~ak~~~~~~i~rl~~AL~IA~aa 231 (342)
T PRK11638 182 SHLNDEL---KGAWAARTIQMKAQVKRQEAVAKAIYDREVNSVEQALKIAEQQ 231 (342)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445554 4679999999999999999 77788889999999999999875
No 158
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.59 E-value=4.3e+02 Score=27.37 Aligned_cols=8 Identities=25% Similarity=0.223 Sum_probs=4.0
Q ss_pred cccccccc
Q 018658 324 TEKQNFWE 331 (352)
Q Consensus 324 ~~kqnfWe 331 (352)
+..||+|.
T Consensus 325 ~~~~~~l~ 332 (514)
T TIGR03319 325 SYGQNVLQ 332 (514)
T ss_pred cCCccHHH
Confidence 34455565
No 159
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.13 E-value=4.5e+02 Score=24.36 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.9
Q ss_pred hcchhHhhhhh
Q 018658 233 VVKDEEIHKLK 243 (352)
Q Consensus 233 ~~kD~eIakLr 243 (352)
.|...+|.+++
T Consensus 315 ~v~~~~~~~i~ 325 (423)
T TIGR01843 315 KLSPKDIGFVH 325 (423)
T ss_pred EEChhhhhhhC
Confidence 34444444444
No 160
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=29.85 E-value=8e+02 Score=27.16 Aligned_cols=169 Identities=28% Similarity=0.359 Sum_probs=96.2
Q ss_pred hhhHhhHHhHHHHHHHHHHHhhhhhh--hhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHH
Q 018658 126 ATADASAASAQSAQLQCLALVKELDE--KNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIA 203 (352)
Q Consensus 126 aTAeaSA~SAqsaqlqCl~L~keL~e--K~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~a 203 (352)
+|||-+|--|+--..-|.-+.+..-. -|--...-.+-.++|..||||+...+..-.. ++ +| -.+.-+-+.
T Consensus 214 a~AEk~aRn~~e~L~~i~n~g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~s-e~----~v---v~ky~~~ve 285 (657)
T KOG1854|consen 214 ATAEKSARNAQEKLVTIANLGETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNS-EA----EV---VGKYSELVE 285 (657)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhh-HH----HH---HHHHHHHHH
Confidence 56666666555555566655554221 2344566778889999999999877443211 11 11 122333455
Q ss_pred HhcCcchhhHHHhhhccCch-hHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhh----hHHHHHH-----------HHHh
Q 018658 204 KAGVNKDCELRKLLDEVSPK-NFERINKLLVVKDEEIHKLKDEIKIMSAHWKLK----TKELESQ-----------LEKQ 267 (352)
Q Consensus 204 kag~~~~~El~kil~evspk-nfe~in~lL~~kD~eIakLrdeirimSaHW~~K----TKELEsQ-----------lekq 267 (352)
++.....-||.-|+..+|-- |=++|+ +|+.--+-||=-.| .++|++| +||+
T Consensus 286 ~ar~~F~~EL~si~p~l~~~d~~~~L~-------------~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~aiEk~ 352 (657)
T KOG1854|consen 286 KARHQFEQELESILPGLSLADKEENLS-------------EDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRAIEKQ 352 (657)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhhcc-------------HhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666677777776533311 111111 34443444444444 3555663 4777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 018658 268 RRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAA 315 (352)
Q Consensus 268 rR~dQELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~ 315 (352)
|-.|-+-++.-+-+|.-.-+.+.|..-.....+-|++-=.||+.|+..
T Consensus 353 Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~ 400 (657)
T KOG1854|consen 353 RLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKR 400 (657)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666666666655555666666666677777653
No 161
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.84 E-value=17 Score=37.81 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=0.0
Q ss_pred hHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhh
Q 018658 71 TRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRS 119 (352)
Q Consensus 71 tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRs 119 (352)
.+...+.++..+|.||.+|+. +|..|.+-+-.+..|..|||.||.
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q----~~~eL~~~A~~a~~LrDElD~lR~ 305 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQ----ENEELQAEAREARALRDELDELRE 305 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555566777766554 455666666666667777776665
No 162
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.25 E-value=2.6e+02 Score=21.34 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 018658 272 QELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQ 318 (352)
Q Consensus 272 QELKKrVlKLEfcLqEaRsQtrKlqrmgErRDkalKElrdq~a~KQ~ 318 (352)
|+++.|+-.+|-=+-.-.-..++|.+..+.-+.+++.+.+++..=..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666777777888888889999988875443
No 163
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.59 E-value=61 Score=21.47 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=14.0
Q ss_pred HhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHh
Q 018658 238 EIHKLKDEIKIMSAHWKLKTKELESQLEKQRR 269 (352)
Q Consensus 238 eIakLrdeirimSaHW~~KTKELEsQlekqrR 269 (352)
||.+||..| .+||+||..=++
T Consensus 2 E~~rlr~rI-----------~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRI-----------SDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHH-----------HHHHHHHHHHhc
Confidence 566666655 588888876543
No 164
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=28.49 E-value=1.1e+02 Score=24.10 Aligned_cols=18 Identities=39% Similarity=0.912 Sum_probs=16.7
Q ss_pred hHhhhhhhHHHHHhhhhh
Q 018658 237 EEIHKLKDEIKIMSAHWK 254 (352)
Q Consensus 237 ~eIakLrdeirimSaHW~ 254 (352)
++|...+.+|.|=|.||+
T Consensus 11 d~I~~~K~~l~ik~~H~E 28 (62)
T PF06034_consen 11 DEINQMKRQLTIKSQHWE 28 (62)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999999999996
No 165
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.02 E-value=2.8e+02 Score=22.42 Aligned_cols=52 Identities=29% Similarity=0.541 Sum_probs=33.8
Q ss_pred hHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 018658 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (352)
Q Consensus 38 ~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~Q 99 (352)
..|-..|.+=..|+-..|+.+-.=|+.+.+ .| ..-|+||.+|...|+.++.|
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k---------mK-~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRK---------MK-QQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHCHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHHhhCCC
Confidence 344455666666777777766665554431 12 13599999999999998876
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.70 E-value=7e+02 Score=25.82 Aligned_cols=142 Identities=20% Similarity=0.292 Sum_probs=83.5
Q ss_pred HHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhh----hhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHh
Q 018658 141 QCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARES----SQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKL 216 (352)
Q Consensus 141 qCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~----SqkQLKDeVlRIE~dIm~A~akag~~~~~El~ki 216 (352)
+.-.+..+|++=..+=.+|...|..|.+....++|.|-+.-. +-..|-+.+-.||.+..+...-...|.--+-+.+
T Consensus 116 ~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~ei 195 (560)
T PF06160_consen 116 DIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREI 195 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445677777777777788999999999999999999998865 4566777788888887665444333333333333
Q ss_pred hhccCch------hHHhh----hhhhhcchhHhhhhhhHHHHH-hhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH
Q 018658 217 LDEVSPK------NFERI----NKLLVVKDEEIHKLKDEIKIM-SAHWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (352)
Q Consensus 217 l~evspk------nfe~i----n~lL~~kD~eIakLrdeirim-SaHW~~KTKELEsQlekqrR~dQELKKrVlKLE 282 (352)
|..+.-. .++.| ..+-..=.+.++.|++-++=| ..|..+..-+++.+++.-+..-.+....+-.|+
T Consensus 196 l~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~ 272 (560)
T PF06160_consen 196 LEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLE 272 (560)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3322110 01111 111112234455555555433 335555555666666666555555555554443
No 167
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.51 E-value=1.1e+02 Score=28.95 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=32.7
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHH
Q 018658 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI 198 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dI 198 (352)
+.--|.+|.++.+|++.+=..+.+---+-.+++.+|-.+|.||
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~ 123 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDI 123 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHH
Confidence 3445677777777777776666655556678999999999999
No 168
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=26.91 E-value=1.6e+02 Score=28.76 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=39.7
Q ss_pred hhhhHHHHHhhhhhhhhHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 018658 241 KLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 241 kLrdeirimSaHW~~KTKELEsQlekqr-R~dQELKKrVlKLEfcLqEaRsQ 291 (352)
.+.++| ..-|..|+..+..|+.-++ ++..+..-|+-+|+..|+-|+++
T Consensus 162 ~l~~~i---~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~rL~~AL~IA~aa 210 (325)
T PRK15471 162 ELEKDL---KDNIALRTKTLQDSLETQEVVAQEQKDLRIKQIQEALQYANQA 210 (325)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444 4678999999999999999 77777888999999999998875
No 169
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.78 E-value=2.9e+02 Score=25.98 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=28.3
Q ss_pred cchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhh
Q 018658 154 SSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLK 188 (352)
Q Consensus 154 ~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLK 188 (352)
..|+.-.+-+..+.+|.+-|+.+|..|.--..||+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666677889999999999999999887666664
No 170
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=26.76 E-value=2.1e+02 Score=28.31 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=42.3
Q ss_pred HhhhhhhHHHHHhhhhhhhhHHHHHHHHHhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 018658 238 EIHKLKDEIKIMSAHWKLKTKELESQLEKQR-RADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 238 eIakLrdeirimSaHW~~KTKELEsQlekqr-R~dQELKKrVlKLEfcLqEaRsQ 291 (352)
-...+.++|+ .-|..|+..+..|++-++ ++.-+..-|+-+|+..|+-|.++
T Consensus 199 ~~~~l~~~i~---~~~~~k~~~~~~~~~~~~~~ak~~~~~~i~rl~~AL~IA~aa 250 (377)
T PRK10381 199 VVKEVLENIR---NKLEIKTQFEKEKLAMDRIKLKNQLDANIQRLNYSLSIANAA 250 (377)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566664 589999999999999999 77888999999999999998874
No 171
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.58 E-value=6.2e+02 Score=27.14 Aligned_cols=96 Identities=26% Similarity=0.437 Sum_probs=52.5
Q ss_pred HHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhh-Hhhh
Q 018658 110 YLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQ-KQLK 188 (352)
Q Consensus 110 ~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~Sq-kQLK 188 (352)
|...+++|-+++..+. +-|. .-.-.|..|.+.|..-....+--+..+..++..+..||.+|..=..+- .||
T Consensus 418 Y~~RI~eLt~qlQ~ad----SKa~---~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL- 489 (518)
T PF10212_consen 418 YMSRIEELTSQLQHAD----SKAV---HFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQL- 489 (518)
T ss_pred HHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-
Confidence 5566666666665433 2222 223367777777765444444444555566666666666665433331 111
Q ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhh
Q 018658 189 DEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLK 243 (352)
Q Consensus 189 DeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLr 243 (352)
..+ ..-+-.||.-|.-.+|||..||
T Consensus 490 -----------s~M-------------------SEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 490 -----------SMM-------------------SEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred -----------HHH-------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 111 0123467877888888888777
No 172
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=26.48 E-value=2.2e+02 Score=20.63 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=35.1
Q ss_pred hHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHH-------HHHhhhhhhh
Q 018658 212 ELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEI-------KIMSAHWKLK 256 (352)
Q Consensus 212 El~kil~evspknfe~in~lL~~kD~eIakLrdei-------rimSaHW~~K 256 (352)
.|.++++...+.+...+-..|.+.+.+|..++.+- .-|=-+|..+
T Consensus 2 ~l~~~l~~~~~~~Wk~La~~Lg~~~~~i~~i~~~~~~~~~~~~~~L~~W~~~ 53 (83)
T PF00531_consen 2 KLFDLLAEDLGSDWKRLARKLGLSESEIENIEEENPDLREQTYEMLQRWRQR 53 (83)
T ss_dssp HHHHHHHHSHSTCHHHHHHHTTS-HHHHHHHHHHSTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcchhhHHHHHHHhCcCHHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999887643 3444567666
No 173
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.16 E-value=6.2e+02 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018658 259 ELESQLEKQRRADQELKKRVLKLEFCLQEARAQT 292 (352)
Q Consensus 259 ELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQt 292 (352)
-+...+..||.--.+|+..|=+|.--++.-+.+.
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778889999999998888877777666553
No 174
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.79 E-value=2.5e+02 Score=19.94 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhh
Q 018658 108 EKYLMQLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQL 187 (352)
Q Consensus 108 ek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQL 187 (352)
.+|..+++++-.-|..+.+.-..... ....-.+..+++.+..-...+..|+.+|+.+-+.-+.|. +. ....-..+
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~-~~--~~~~~~~i 78 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI-DS--GPEDSDEI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT--THTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-Hc--CCCcHHHH
Confidence 46777777777777776665411111 000111222333333333445556666666555555552 11 13333445
Q ss_pred hHHHHHHH
Q 018658 188 KDEVFRIE 195 (352)
Q Consensus 188 KDeVlRIE 195 (352)
++.+-.|.
T Consensus 79 ~~~~~~l~ 86 (105)
T PF00435_consen 79 QEKLEELN 86 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 175
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.47 E-value=3.5e+02 Score=23.29 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=53.1
Q ss_pred hhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhh
Q 018658 163 VTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKL 242 (352)
Q Consensus 163 V~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakL 242 (352)
+.++-.++..++..+..-+-...++.+|+.+.-...=+. ++......+|..=+.++.- -.+.+=.+|.=|.+++..|
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--~~~~~~~~~L~~el~~l~~-ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL--RALKKEVEELEQELEELQQ-RYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHH
Confidence 445555666777777777778888888887765444222 2223344455555555543 2344455677799999999
Q ss_pred hhHHHHH
Q 018658 243 KDEIKIM 249 (352)
Q Consensus 243 rdeirim 249 (352)
+.+|.=|
T Consensus 102 ~~Dv~Dl 108 (120)
T PF12325_consen 102 RADVQDL 108 (120)
T ss_pred HHHHHHH
Confidence 9888644
No 176
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=25.08 E-value=2.2e+02 Score=27.12 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=61.2
Q ss_pred hHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHH--HHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhH
Q 018658 161 DRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDI--MQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEE 238 (352)
Q Consensus 161 ~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dI--m~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~e 238 (352)
++|.+|-.-|-.||---+-||--.+.|| .++|+++ +.+=.+.|.+.. ...++-|...+-..|-=|++-
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR---~~lE~EL~~lr~qq~~~~~~~-------~~~~~~~~~~L~~~LrEkEEr 72 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLR---TRLERELESLRAQQRQGNSSG-------SSSPSNNASNLKELLREKEER 72 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccCCCCC-------CCCCCCcHHHHHHHHHHHHHH
Confidence 5889999999999999999999999998 5667776 333333332211 122335778888888889999
Q ss_pred hhhhhhHHHHHhhhhhhhh
Q 018658 239 IHKLKDEIKIMSAHWKLKT 257 (352)
Q Consensus 239 IakLrdeirimSaHW~~KT 257 (352)
|=.|.-|+ ++|.-|-
T Consensus 73 ILaLEad~----~kWEqkY 87 (205)
T PF12240_consen 73 ILALEADM----TKWEQKY 87 (205)
T ss_pred HHHHHHHH----HHHHHHH
Confidence 98888886 6888776
No 177
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.00 E-value=4.2e+02 Score=23.36 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=38.9
Q ss_pred hhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhh
Q 018658 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLK 188 (352)
Q Consensus 130 aSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLK 188 (352)
.+|.-|--++|.=++-+|.+--++..... -.+..++-+++.+|.-+...|..-+.|+
T Consensus 44 ~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~--~~~~~l~a~~~e~qsli~~yE~~~~kLe 100 (131)
T PF04859_consen 44 QAADEAVVSELRRLSELKRRYRKKQSDPS--PQVARLAAEIQEQQSLIKTYEIVVKKLE 100 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCC--ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 45556667788888877776655555444 4556788888888888888777744443
No 178
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=25.00 E-value=5.5e+02 Score=24.60 Aligned_cols=109 Identities=30% Similarity=0.456 Sum_probs=72.6
Q ss_pred chhhHHHhhhc------cCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhH---HH---HH------HHHHh---
Q 018658 209 KDCELRKLLDE------VSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTK---EL---ES------QLEKQ--- 267 (352)
Q Consensus 209 ~~~El~kil~e------vspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTK---EL---Es------Qlekq--- 267 (352)
.|.+|.++.++ -.|+|++|-.++-.++ +-|++|+.|+.-..+--+.-.. +. ++ ++...
T Consensus 138 ~d~~l~~~fe~~~~v~~PNpkNi~N~~~i~~Le-e~I~rLk~E~~~W~~~l~~~~~p~~e~~~~~~~~~~~~~~~~~~~~ 216 (301)
T PF08202_consen 138 EDTTLRKLFEDSKVVLKPNPKNIENEENIAELE-EKIKRLKEERQAWAQLLKPYQDPDKEWSKIESSRDSEAKIDSVLED 216 (301)
T ss_pred CcccccccccccccccCCCccchhhHHHHHHHH-HHHHHHHhhHHHHHHHHhhccCcccccccccccccccccccccccC
Confidence 56677776644 3689999999888877 6899999998755444322222 11 00 00000
Q ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHhhhh
Q 018658 268 ----RRADQELKKRVLKLEFCLQEARAQTRKLQR----MGERRDKAIKELRDQLAAKQQ 318 (352)
Q Consensus 268 ----rR~dQELKKrVlKLEfcLqEaRsQtrKlqr----mgErRDkalKElrdq~a~KQ~ 318 (352)
..+.+-+...--.|||-+=+-...+.+|+. .++--+.-|..|..+++..-.
T Consensus 217 ~~~~~~~~~~~~~v~~~le~~iD~L~~~vH~L~~~~~~~~~~~~~~l~klS~~l~~r~~ 275 (301)
T PF08202_consen 217 PETYSKILQRLSQVQSDLEFKIDELADSVHKLEQRSEAAGEEADQKLQKLSAQLAKRLE 275 (301)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233555556799999999999999999 788888888778777776544
No 179
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=24.95 E-value=5.8e+02 Score=23.88 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=46.1
Q ss_pred HHhhhhhhhhcchhhhh-hHhhhhHHhHHhHHHHHhhhhhh-hHhhhHHHHHH---HHHHHHHHHHhcCcchhhHHHhhh
Q 018658 144 ALVKELDEKNSSLKEHE-DRVTRLGQQLDNLQKDLQARESS-QKQLKDEVFRI---EQDIMQTIAKAGVNKDCELRKLLD 218 (352)
Q Consensus 144 ~L~keL~eK~~sLkEhE-~rV~~lgeQLd~LqkdLqARE~S-qkQLKDeVlRI---E~dIm~A~akag~~~~~El~kil~ 218 (352)
.-+.+...+...||.|- ..++..-+.++.+.+.+++.-.- |-+||-+=+++ |..+ ......+.||-+|.|
T Consensus 125 ~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L-----eQK~kEn~ELtkICD 199 (207)
T PF05010_consen 125 ERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESL-----EQKTKENEELTKICD 199 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34455677888898884 45666777778777776665443 44566663333 3333 334566788888888
Q ss_pred cc
Q 018658 219 EV 220 (352)
Q Consensus 219 ev 220 (352)
|+
T Consensus 200 eL 201 (207)
T PF05010_consen 200 EL 201 (207)
T ss_pred HH
Confidence 75
No 180
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.62 E-value=4e+02 Score=21.94 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=51.1
Q ss_pred hcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018658 233 VVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQ--RRADQELKKRVLKLEFCLQEARAQTRKLQRMG 299 (352)
Q Consensus 233 ~~kD~eIakLrdeirimSaHW~~KTKELEsQlekq--rR~dQELKKrVlKLEfcLqEaRsQtrKlqrmg 299 (352)
-++.++|+.|.+.+.-. ..|-..+|..++.- +..-+.|+..+-.++=++.+-+.+++-+.+..
T Consensus 31 ~a~~~~~~~l~~~~~~~----~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEH----DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred hccHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36788999998877632 56777799999988 88888999999999999999998887765543
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.26 E-value=9.4e+02 Score=26.10 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhH
Q 018658 140 LQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKD 189 (352)
Q Consensus 140 lqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKD 189 (352)
-++...+.++..+..-|.++...+..+-.++....+.+..++--..+++.
T Consensus 277 ~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (908)
T COG0419 277 RELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777776666666655555544444444443
No 182
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=24.24 E-value=1.1e+02 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhc--CcchhhHHHhhhccCchhHHhhhhhh
Q 018658 194 IEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFERINKLL 232 (352)
Q Consensus 194 IE~dIm~A~akag--~~~~~El~kil~evspknfe~in~lL 232 (352)
||-+|-|+++++| .-.-.||-.-+...+|-+...+.+++
T Consensus 7 veLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~Rim 47 (51)
T PF08100_consen 7 VELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIM 47 (51)
T ss_dssp HHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHH
T ss_pred HHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHH
Confidence 6889999999998 34456666666656677666666554
No 183
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.82 E-value=6.8e+02 Score=25.17 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccC--------------chhHHhhhhhhh
Q 018658 168 QQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVS--------------PKNFERINKLLV 233 (352)
Q Consensus 168 eQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evs--------------pknfe~in~lL~ 233 (352)
+.+..|++.+..=+--...+.++.-.++.-| ++|+... +...+.+..++.
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA----------------KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFD 134 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhhhccccccccccCCCCHHHHHHHHH
Q ss_pred cchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHH
Q 018658 234 VKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKL 281 (352)
Q Consensus 234 ~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKL 281 (352)
.=.++++.++.+++ +++.++++.++.-++|.++.-.|
T Consensus 135 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 135 FNGSEIERLLTEDR-----------EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhh
No 184
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.78 E-value=1.1e+03 Score=26.87 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhh
Q 018658 138 AQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA 179 (352)
Q Consensus 138 aqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA 179 (352)
-|+|-+..+|.|..|. |+.|-=+.++|+++-.|+-.++-
T Consensus 468 ~ql~qs~iIkKLRAk~---ke~etl~~K~ge~i~~L~sE~~~ 506 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKI---KEAETLEEKKGELITKLQSEENK 506 (961)
T ss_pred HHHHHHHHHHHHHHHh---hhhhHHHHHhhhHHHHHHHHHHH
Confidence 3677788899998875 56666677777777776666554
No 185
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.61 E-value=5.5e+02 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred hHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhh
Q 018658 38 QSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKA 79 (352)
Q Consensus 38 ~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~ka 79 (352)
...+..+..|-+++.+.+.+++.-+..+..+...|...+.|.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~ 106 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE 106 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 344455556666666666666666555555544444443333
No 186
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.54 E-value=27 Score=36.50 Aligned_cols=100 Identities=24% Similarity=0.351 Sum_probs=0.0
Q ss_pred hhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHhhhhhhhhhH----------hHhhhHhhHHhHHHHHHHHHHHhh
Q 018658 78 KAKNMEDEICKLQKTLEERNGRLQASACTAEKYLMQLDGLRSQLAA----------TKATADASAASAQSAQLQCLALVK 147 (352)
Q Consensus 78 kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~eLd~lRsQLs~----------tqaTAeaSA~SAqsaqlqCl~L~k 147 (352)
.++.+-|||.-|..+- +|-.++.+.+..--+-|++++++|.|+-. +.+--|.....+-...-|+-.+-+
T Consensus 292 ~a~~LrDElD~lR~~a-~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~ 370 (713)
T PF05622_consen 292 EARALRDELDELREKA-DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKK 370 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666665554332 23333433333333334555566655422 222222222222233344445555
Q ss_pred hhhhhhcchhhhhhHhhhhHHhHHhHHHHHh
Q 018658 148 ELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQ 178 (352)
Q Consensus 148 eL~eK~~sLkEhE~rV~~lgeQLd~LqkdLq 178 (352)
++.+-...+.+...++.++-..+..|+..+.
T Consensus 371 qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 371 QIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566665555555555443
No 187
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.52 E-value=2.7e+02 Score=23.70 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=23.0
Q ss_pred cChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhh
Q 018658 26 IDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRL 58 (352)
Q Consensus 26 lDPLLkDL~EKK~sfRrNVvslAaELK~~R~rL 58 (352)
+=|+|+.+.+.=...++.+..+.++|.+.+...
T Consensus 11 lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 43 (120)
T PF09969_consen 11 LLPLLRPILEEIRELKAELEELEERLQELEDSL 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 346677666666777777778877777766555
No 188
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.47 E-value=5.5e+02 Score=23.16 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=58.1
Q ss_pred ccChhhhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHH-------------HHhhhHHHHHHhhhchHHHHHHHHH
Q 018658 25 EIDPLLKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFV-------------KETLTRQEAEMKAKNMEDEICKLQK 91 (352)
Q Consensus 25 elDPLLkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~-------------kEt~tRk~AE~kak~ME~Ei~kLqK 91 (352)
-+|-++.|+.+-=...|+.|+..-+.-+....++...+.... .|...|..++ +...-+..+..|+.
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~-~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI-EKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345567777777777788888777766666555544333221 2333333322 11222333333333
Q ss_pred HHhhhhhhhhhhhccHHHHHHHhhhhhhhhhHhHhhhHhhHHhHHHHHH
Q 018658 92 TLEERNGRLQASACTAEKYLMQLDGLRSQLAATKATADASAASAQSAQL 140 (352)
Q Consensus 92 ~Ledk~~QL~as~~stek~l~eLd~lRsQLs~tqaTAeaSA~SAqsaql 140 (352)
|+.....+.+++-..|..|+.++...++.-..=.+=.+.|+.
T Consensus 107 -------~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 107 -------ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455666677777888887777776644444444443
No 189
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.39 E-value=5.5e+02 Score=23.14 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=37.5
Q ss_pred hhhhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHh
Q 018658 30 LKDLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLE 94 (352)
Q Consensus 30 LkDL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Le 94 (352)
+..|..+...++..+..|-.++.+++. =-.+|..|...-.+...++.++..|++.|+
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~--------~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKK--------GREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554422 224557888888888899999999998887
No 190
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=23.03 E-value=5.9e+02 Score=24.37 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=45.3
Q ss_pred HhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhh
Q 018658 162 RVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHK 241 (352)
Q Consensus 162 rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIak 241 (352)
-+.++++-|--+|-|.++ +|-|||.-|.+.++--|. .| +.-=+.|.+...+.|-||.+
T Consensus 69 ~L~~fae~la~vqDYRqa----------~v~RlE~KVv~pL~~Y~~--~c----------K~~r~elK~~~~ar~kEikq 126 (219)
T PF06730_consen 69 GLKNFAECLAKVQDYRQA----------EVERLEAKVVEPLSQYGT--IC----------KHARDELKKFNKARNKEIKQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHH--HH----------HHHHHHHHHHHHHHHHHHHH
Confidence 456788888888877766 689999999988877763 11 11113345556677777777
Q ss_pred hh--hHHHHHhhh
Q 018658 242 LK--DEIKIMSAH 252 (352)
Q Consensus 242 Lr--deirimSaH 252 (352)
++ +.+|-=+|.
T Consensus 127 ~~~Leklr~k~ps 139 (219)
T PF06730_consen 127 LKQLEKLRQKNPS 139 (219)
T ss_pred HHHHHHHHccCCc
Confidence 77 355444443
No 191
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.73 E-value=87 Score=32.91 Aligned_cols=38 Identities=37% Similarity=0.450 Sum_probs=29.2
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018658 261 ESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRM 298 (352)
Q Consensus 261 EsQlekqrR~dQELKKrVlKLEfcLqEaRsQtrKlqrm 298 (352)
|+-+..-=.--|||+|+|..||--=+---+|++|||-+
T Consensus 278 E~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 278 ESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred hhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33333333456999999999999888888999999865
No 192
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.66 E-value=3.3e+02 Score=20.24 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=38.4
Q ss_pred hhHHhHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhh----hhhhhHhhhHHHHHHHHHHHHHHH
Q 018658 130 ASAASAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQA----RESSQKQLKDEVFRIEQDIMQTIA 203 (352)
Q Consensus 130 aSA~SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqA----RE~SqkQLKDeVlRIE~dIm~A~a 203 (352)
.|+......+-.+..|...+......+...+..|...-+.|-....++.. ++==....+.+..+-|...||.++
T Consensus 42 ~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~a 119 (123)
T PF02050_consen 42 VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELDEIA 119 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555544444332 122233445566677777766554
No 193
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=22.60 E-value=6.9e+02 Score=23.97 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018658 283 FCLQEARAQTRKLQRMGERRDKAIKELRDQL 313 (352)
Q Consensus 283 fcLqEaRsQtrKlqrmgErRDkalKElrdq~ 313 (352)
-.+..-|.-+.||..|+..|.+.+++||+..
T Consensus 188 ~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~ 218 (337)
T cd09234 188 AIEKELKRILNKVNEMRKQRRSLEQQLRDAI 218 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466668888999999999999999998754
No 194
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.49 E-value=1.1e+03 Score=26.35 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhH
Q 018658 134 SAQSAQLQCLALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCEL 213 (352)
Q Consensus 134 SAqsaqlqCl~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El 213 (352)
|+.-+|-+|-..--.+....+.+..-+-+.++-..|++..++.++++.-++.++.++-.-+.+-+-.--+ ..|+
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~------~~el 239 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL------SEEL 239 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh------hhHH
Confidence 3345678888888888888999999999999999999999999999999999999997766554432221 1122
Q ss_pred HHh---hh-ccCchhHHhhhhhhhcchhHhhhhhhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 018658 214 RKL---LD-EVSPKNFERINKLLVVKDEEIHKLKDEIKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEF 283 (352)
Q Consensus 214 ~ki---l~-evspknfe~in~lL~~kD~eIakLrdeirimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEf 283 (352)
..| .. .+.-. +.+-+-+.=--+|.+.+|+ -+..++||+.--+-|++.|-.. ..|+-+++-||.
T Consensus 240 e~i~~~~~dqlqel--~~l~~a~~q~~ee~~~~re-~~~tv~~LqeE~e~Lqskl~~~----~~l~~~~~~LEL 306 (716)
T KOG4593|consen 240 EAINKNMKDQLQEL--EELERALSQLREELATLRE-NRETVGLLQEELEGLQSKLGRL----EKLQSTLLGLEL 306 (716)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhHHH
Confidence 111 10 00000 0000001111133344433 3456789998888888776543 467888888875
No 195
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=22.23 E-value=6.3e+02 Score=23.38 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=27.1
Q ss_pred hhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHh
Q 018658 156 LKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKA 205 (352)
Q Consensus 156 LkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~aka 205 (352)
|+.--|-|+.++++|.+.-+ |++.++-.+..++..-+.++
T Consensus 39 lkqqqd~itk~veeLe~~~~----------q~~~~~s~~~~~~vk~L~k~ 78 (165)
T PF09602_consen 39 LKQQQDWITKQVEELEKELK----------QFKREFSDLYEEYVKQLRKA 78 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 66667778888888776544 55666667777776666443
No 196
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.11 E-value=6.1e+02 Score=23.16 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018658 256 KTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQT 292 (352)
Q Consensus 256 KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQt 292 (352)
|...+.+.|+.-.+..+|..+..-..|-.|.++|.+-
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 197
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=22.10 E-value=1e+03 Score=25.82 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=48.2
Q ss_pred hHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhc-c-----CchhHHhhhhhhhcchhHhhhh
Q 018658 169 QLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDE-V-----SPKNFERINKLLVVKDEEIHKL 242 (352)
Q Consensus 169 QLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~e-v-----spknfe~in~lL~~kD~eIakL 242 (352)
.++..-|.-...+.--.++..+...+.-+|-++...... .-+....|.+ + .-.|+..+-......+.+|..|
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l 246 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS--AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQAL 246 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHH
Confidence 455555555555555556666666666666555544433 1122222222 1 2233444445555556666666
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHhHhhHHHH
Q 018658 243 KDEIKIMSAHWKLKTKELESQLEKQRRADQEL 274 (352)
Q Consensus 243 rdeirimSaHW~~KTKELEsQlekqrR~dQEL 274 (352)
++++.. |+.+.++|..+..+-.+.-|+.
T Consensus 247 ~~~l~~----l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 247 QQELEE----LKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 3444444444444444443333
No 198
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=22.09 E-value=66 Score=33.56 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.9
Q ss_pred HHHHhhhhhhhhhHhHhhhHh
Q 018658 110 YLMQLDGLRSQLAATKATADA 130 (352)
Q Consensus 110 ~l~eLd~lRsQLs~tqaTAea 130 (352)
+-+|+||||.||++.|+-+|-
T Consensus 423 LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 423 LQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999998763
No 199
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=21.80 E-value=81 Score=25.32 Aligned_cols=31 Identities=32% Similarity=0.615 Sum_probs=27.1
Q ss_pred HHHhhhccCchhHHhhhhhhhcchhHhhhhh
Q 018658 213 LRKLLDEVSPKNFERINKLLVVKDEEIHKLK 243 (352)
Q Consensus 213 l~kil~evspknfe~in~lL~~kD~eIakLr 243 (352)
|-.+.++|||+++..+-+-|.+.|.+|....
T Consensus 2 ~y~v~d~v~~~~wk~~~R~LGlse~~Id~ie 32 (80)
T cd08313 2 LYTVLDEVPPRRWKEFVRRLGLSDNEIERVE 32 (80)
T ss_pred HHHHHHhCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567899999999999999999999997554
No 200
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.77 E-value=7.7e+02 Score=26.48 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=48.3
Q ss_pred HHHhhhhhhhhcchhhhhhHhhhhHHhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHH
Q 018658 143 LALVKELDEKNSSLKEHEDRVTRLGQQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAK 204 (352)
Q Consensus 143 l~L~keL~eK~~sLkEhE~rV~~lgeQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~ak 204 (352)
-.|...++-.+.-.+-|.+|++.++|-+..|||..-.=-..-.+.|.--.+++|-|.+-+-|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIK 398 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777888999999999999999999666555566677787788888888775543
No 201
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.37 E-value=4e+02 Score=26.51 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=35.4
Q ss_pred HHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhh
Q 018658 36 KKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGR 99 (352)
Q Consensus 36 KK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~Q 99 (352)
-|.-++.-...|-+|+.+++.||.+-|--.++ -|.+.+.++.|+.+|.+++.+-.+-
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~-------LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSR-------LEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhchhHHHHHHHHHHHhccc
Confidence 35556666667777777777777655433321 3445566777888887777654443
No 202
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.35 E-value=3.9e+02 Score=25.59 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred hhHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHh
Q 018658 32 DLNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKET 69 (352)
Q Consensus 32 DL~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt 69 (352)
..-||=.++|.....|.+++...+++++.|+..+....
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678889999999999999999999999998887653
No 203
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=21.28 E-value=4.4e+02 Score=21.16 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=5.0
Q ss_pred hHHhHHhHHHHHh
Q 018658 166 LGQQLDNLQKDLQ 178 (352)
Q Consensus 166 lgeQLd~LqkdLq 178 (352)
|....+.+...|.
T Consensus 87 l~~~~~~~~~~l~ 99 (202)
T PF01442_consen 87 LSERAEELKERLE 99 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443333
No 204
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.13 E-value=4.6e+02 Score=21.57 Aligned_cols=13 Identities=8% Similarity=0.442 Sum_probs=4.9
Q ss_pred CCCCccccChhhh
Q 018658 19 SSVPAREIDPLLK 31 (352)
Q Consensus 19 ss~~~~elDPLLk 31 (352)
+-+..-+.|-++.
T Consensus 17 ~kIa~Vd~~~v~~ 29 (158)
T PF03938_consen 17 PKIAVVDVDKVFQ 29 (158)
T ss_dssp -CEEEE-HHHHHH
T ss_pred CcEEEeeHHHHHH
Confidence 3444444444443
No 205
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.00 E-value=2.8e+02 Score=27.35 Aligned_cols=38 Identities=34% Similarity=0.446 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 018658 254 KLKTKELESQLEKQRRADQELKKRVLKLEFCLQEARAQ 291 (352)
Q Consensus 254 ~~KTKELEsQlekqrR~dQELKKrVlKLEfcLqEaRsQ 291 (352)
+-+..+||..++.--.+-+++.|++-+|+=+|++.-..
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777778877777788888888888888764433
No 206
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.55 E-value=1.4e+03 Score=26.60 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=54.2
Q ss_pred hHHHHhHHHHhHHHHHHHHHHHHHhhhhhhhhHHHHhhhHHHHHHhhhchHHHHHHHHHHHhhhhhhhhhhhccHHHHHH
Q 018658 33 LNEKKQSFRKNVVSLAAELKEVRTRLASQEQCFVKETLTRQEAEMKAKNMEDEICKLQKTLEERNGRLQASACTAEKYLM 112 (352)
Q Consensus 33 L~EKK~sfRrNVvslAaELK~~R~rLasQEq~~~kEt~tRk~AE~kak~ME~Ei~kLqK~Ledk~~QL~as~~stek~l~ 112 (352)
|.||---||-+=+.|-.-.+|+--.|.+++++.. .++..-.++.+-+.+++.....-+--.+.-+.--+++..
T Consensus 429 lkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444555666666666666777777777766654 333444444454444444333322222222223334445
Q ss_pred HhhhhhhhhhHhHhhhHhhHHhHHHHHHHHHHHhhhhhhhhcchh
Q 018658 113 QLDGLRSQLAATKATADASAASAQSAQLQCLALVKELDEKNSSLK 157 (352)
Q Consensus 113 eLd~lRsQLs~tqaTAeaSA~SAqsaqlqCl~L~keL~eK~~sLk 157 (352)
||--+--++...+-+-..++ .+..++++ .|-..|.+|+..+-
T Consensus 502 El~~l~~e~~~lq~~~~~~~-qs~~~~~~--~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLA-QSHNNQLA--QLEDLLKQKDRLAA 543 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHHH--HHHHHHHhhHHHHH
Confidence 55555555544444422222 22233332 33444556665543
No 207
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.52 E-value=9.4e+02 Score=27.27 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 018658 246 IKIMSAHWKLKTKELESQLEKQRRADQELKKRVLKLEFC 284 (352)
Q Consensus 246 irimSaHW~~KTKELEsQlekqrR~dQELKKrVlKLEfc 284 (352)
..+=+.||.-.--..|++++.+|-.-.+++++.+-.|.-
T Consensus 532 ~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~ 570 (809)
T KOG0247|consen 532 AQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYS 570 (809)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 333347777777777788888888778888877765543
No 208
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.41 E-value=3.1e+02 Score=26.13 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=45.7
Q ss_pred HhHHhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHhcCcchhhHHHhhhccCchhHHhhhhhhhcchhHhhhhhhHHH
Q 018658 168 QQLDNLQKDLQARESSQKQLKDEVFRIEQDIMQTIAKAGVNKDCELRKLLDEVSPKNFERINKLLVVKDEEIHKLKDEIK 247 (352)
Q Consensus 168 eQLd~LqkdLqARE~SqkQLKDeVlRIE~dIm~A~akag~~~~~El~kil~evspknfe~in~lL~~kD~eIakLrdeir 247 (352)
+-++.+...|+.++ +.|||+++|=++|..--..| +.. +--.+||.-++-|.--++.+.+|+..|.
T Consensus 3 e~i~si~~~L~e~d----~~REE~l~lsRei~r~s~~a-------I~~----~H~~~~eeA~~~l~~a~~~v~~Lk~~l~ 67 (204)
T COG2178 3 EEINSIREVLQEKD----KAREEALKLSREIVRLSGEA-------IFL----LHRGDFEEAEKKLKKASEAVEKLKRLLA 67 (204)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHH----HHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777787776 56999999999997643332 111 1223488888888888888888887664
No 209
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.38 E-value=2.7e+02 Score=29.35 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHhHhhHHHHHHHHHHHH
Q 018658 252 HWKLKTKELESQLEKQRRADQELKKRVLKLE 282 (352)
Q Consensus 252 HW~~KTKELEsQlekqrR~dQELKKrVlKLE 282 (352)
-+..|++|||.||++-|..-++|.+..-.+|
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4788999999999999877777777766664
No 210
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.24 E-value=4.8e+02 Score=29.18 Aligned_cols=116 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred HhhhhHHhHHhHHHHHhhh-----hhhhHhhhHHHHHHHHHHHHHHHHhc--CcchhhHHHhhhccCchhHHh--hhhhh
Q 018658 162 RVTRLGQQLDNLQKDLQAR-----ESSQKQLKDEVFRIEQDIMQTIAKAG--VNKDCELRKLLDEVSPKNFER--INKLL 232 (352)
Q Consensus 162 rV~~lgeQLd~LqkdLqAR-----E~SqkQLKDeVlRIE~dIm~A~akag--~~~~~El~kil~evspknfe~--in~lL 232 (352)
++..|.+.|..|+..+.-= .++-.-|++-+-.+-.+|-+-++.|+ .+--.-|-.+=.|+|--|..+ ||..|
T Consensus 430 ~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L 509 (762)
T PLN03229 430 PVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVL 509 (762)
T ss_pred CCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHH
Q ss_pred hcchhHhhhhhhHH-HHHhh-----hhhhhhHHHHHHHH---------HhHhhHHHHHHHHHH
Q 018658 233 VVKDEEIHKLKDEI-KIMSA-----HWKLKTKELESQLE---------KQRRADQELKKRVLK 280 (352)
Q Consensus 233 ~~kD~eIakLrdei-rimSa-----HW~~KTKELEsQle---------kqrR~dQELKKrVlK 280 (352)
.-| |.+|++|| +=+++ .-+.|-.-|-.... +--.-+||+||||..
T Consensus 510 ~eK---~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e 569 (762)
T PLN03229 510 MEK---IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKE 569 (762)
T ss_pred HHH---HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHH
Done!