Query 018659
Match_columns 352
No_of_seqs 247 out of 728
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.6E-33 1.6E-37 220.4 6.2 67 279-346 9-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.2E-32 4.1E-37 219.0 5.5 67 279-346 12-78 (78)
3 2rpr_A Flywch-type zinc finger 64.6 3.3 0.00011 32.0 2.2 49 284-345 24-74 (87)
4 1xiw_B T-cell surface glycopro 25.2 28 0.00096 26.7 1.6 49 285-342 17-75 (79)
5 1cz6_A Protein (androctonin); 25.0 21 0.00071 22.5 0.6 7 306-312 16-22 (26)
6 1odh_A MGCM1; transcription fa 17.3 99 0.0034 27.6 3.5 38 307-347 122-159 (174)
7 1xwj_B Talin, metavinculin; ce 17.3 1.6E+02 0.0053 18.3 3.5 21 3-23 5-25 (26)
8 1xiw_A T-cell surface glycopro 17.0 24 0.00081 29.2 -0.5 27 285-311 33-78 (105)
9 2vsd_A CHIR AB1; immune system 12.6 40 0.0014 25.4 -0.2 36 305-343 68-103 (105)
10 2v9t_A Roundabout homolog 1; s 11.1 92 0.0031 23.0 1.4 34 303-342 82-115 (117)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=4.6e-33 Score=220.42 Aligned_cols=67 Identities=60% Similarity=1.142 Sum_probs=63.3
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 018659 279 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP 346 (352)
Q Consensus 279 ~~~di~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~ 346 (352)
...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4568999999999999999999999999999995 899999999999999999999999999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=1.2e-32 Score=218.97 Aligned_cols=67 Identities=52% Similarity=1.033 Sum_probs=63.1
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 018659 279 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP 346 (352)
Q Consensus 279 ~~~di~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~ 346 (352)
...++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4568899999999999999999999999999995 899999999999999999999999999999863
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=64.61 E-value=3.3 Score=32.02 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCCCccccccCCCCCCCCCCCCcceeccCC--CCCCcccceeecCCCCcEEEEEEeccCCCCCC
Q 018659 284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSM--RGCPARKHVERCLEEPTMLIVTYEGEHNHPRL 345 (352)
Q Consensus 284 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~--~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~ 345 (352)
.-|||...+--. ...+.|.+|+.. .+|.|+=.... ++ +...+.|||+..
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCc
Confidence 358987775321 123689999962 48999744432 22 235789999753
No 4
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.20 E-value=28 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=27.3
Q ss_pred CCCccccccCCCC--------CC--CCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCC
Q 018659 285 PDDYSWRKYGQKP--------IK--GSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342 (352)
Q Consensus 285 ~Dgy~WRKYGQK~--------Ik--gs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H 342 (352)
.+++.|-|-|... +. ...-|||||.|.. .+.+. .....+.|.|.=..||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~------~~~~~---~~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG------TDIYK---DKESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC------CCCCC---cccEEEEEEhhhcCCc
Confidence 4668899888641 23 2345999999952 11111 0012567888777666
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=25.04 E-value=21 Score=22.53 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=6.0
Q ss_pred cceeccC
Q 018659 306 GYYKCSS 312 (352)
Q Consensus 306 sYYrCs~ 312 (352)
.||+|++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 6999995
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=17.33 E-value=99 Score=27.64 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=23.8
Q ss_pred ceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCCCC
Q 018659 307 YYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPS 347 (352)
Q Consensus 307 YYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~~ 347 (352)
-+.|.-+-|=||+ ++-|-.++. +| .--+|.|+|++|++
T Consensus 122 ~~~Crgh~GyPVT-hFWrh~~~~-if-FqaKG~HDHpRPe~ 159 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRHDGRF-IF-FQSKGEHDHPRPET 159 (174)
T ss_dssp EECCCTBTTBCCE-EEEEECSSB-EE-EEEECCCCSCCCCC
T ss_pred eEeccCcCCCcce-EEEEEcCCE-EE-EecccccCCCCCCC
Confidence 4667654566663 455533333 33 34689999999875
No 7
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=17.32 E-value=1.6e+02 Score=18.28 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 018659 3 EVEEANKAAVESCHRVLSLLS 23 (352)
Q Consensus 3 eVeEA~~a~veS~~~ll~lLS 23 (352)
|+-+++|.-.|.+.+||..|.
T Consensus 5 el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 5 ELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999885
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=16.96 E-value=24 Score=29.22 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=17.8
Q ss_pred CCCccccccCCCC----------------CCCCCC---CCcceecc
Q 018659 285 PDDYSWRKYGQKP----------------IKGSPH---PRGYYKCS 311 (352)
Q Consensus 285 ~Dgy~WRKYGQK~----------------Ikgs~~---pRsYYrCs 311 (352)
++...|-|-|+.. +.++-. ||+||.|.
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 3457777776441 445533 89999996
No 9
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=12.59 E-value=40 Score=25.44 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=16.2
Q ss_pred CcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCC
Q 018659 305 RGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 343 (352)
Q Consensus 305 RsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~ 343 (352)
-+-|+|....+-+ .+....-|+..+.|+|.+.|.|.
T Consensus 68 sG~Y~C~~~n~~~---~~~s~~Sdpl~L~V~~~~~~~~~ 103 (105)
T 2vsd_A 68 AGTYQCRYQVSEP---LWTSNQSDPVELVLTIEGRHHHH 103 (105)
T ss_dssp CEEEEEEEEEETT---EEECCCCCCEEECCC--------
T ss_pred CeEEEEEEEcCCC---CcccCCCCCEEEEEEEecccccc
Confidence 3788997311111 12223468888999999999875
No 10
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=11.12 E-value=92 Score=23.04 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=14.2
Q ss_pred CCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCC
Q 018659 303 HPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342 (352)
Q Consensus 303 ~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H 342 (352)
...+.|.|. |...+-........+.|.|.-+|-|
T Consensus 82 ~D~G~Y~C~------a~N~~G~~~s~~~~l~~~~~~~~~~ 115 (117)
T 2v9t_A 82 PDEGVYVCV------ARNYLGEAVSHDASLEVAAAAHHHH 115 (117)
T ss_dssp SSCEEEEEE------EEETTEEEECCCEEEEEC-------
T ss_pred CcCEEEEEE------EEeCccceEeeeEEEEhhhhhhhhc
Confidence 344667776 3344444444555566655555544
Done!