Query 018661
Match_columns 352
No_of_seqs 397 out of 1817
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h6l_A Histone-lysine N-methyl 100.0 1.2E-58 4E-63 437.9 16.8 240 21-260 12-264 (278)
2 3ooi_A Histone-lysine N-methyl 100.0 1.4E-56 4.6E-61 414.3 19.5 216 38-253 14-232 (232)
3 3ope_A Probable histone-lysine 100.0 6.4E-55 2.2E-59 400.7 22.2 213 43-258 2-219 (222)
4 1mvh_A Cryptic LOCI regulator 100.0 3.2E-50 1.1E-54 384.4 20.4 236 11-254 12-299 (299)
5 3bo5_A Histone-lysine N-methyl 100.0 3.1E-49 1.1E-53 376.0 19.7 233 21-255 15-288 (290)
6 1ml9_A Histone H3 methyltransf 100.0 5.8E-49 2E-53 376.5 15.6 227 26-253 8-302 (302)
7 2r3a_A Histone-lysine N-methyl 100.0 1.9E-48 6.6E-53 371.9 18.8 240 9-253 22-300 (300)
8 3hna_A Histone-lysine N-methyl 100.0 3.8E-49 1.3E-53 374.8 12.9 218 21-251 35-287 (287)
9 2w5y_A Histone-lysine N-methyl 100.0 4.7E-40 1.6E-44 295.1 11.3 152 101-253 39-192 (192)
10 3f9x_A Histone-lysine N-methyl 100.0 1.1E-34 3.6E-39 254.3 12.7 132 104-235 20-155 (166)
11 2f69_A Histone-lysine N-methyl 100.0 4.5E-29 1.5E-33 233.7 13.0 141 88-235 83-235 (261)
12 1n3j_A A612L, histone H3 lysin 100.0 3.6E-29 1.2E-33 207.9 8.0 110 113-237 3-112 (119)
13 3s8p_A Histone-lysine N-methyl 99.9 1.5E-28 5.1E-33 230.1 6.8 135 114-255 131-271 (273)
14 1h3i_A Histone H3 lysine 4 spe 99.9 6.2E-27 2.1E-31 222.8 12.6 117 113-235 162-289 (293)
15 2qpw_A PR domain zinc finger p 99.9 3.7E-27 1.3E-31 203.1 8.4 111 111-236 26-147 (149)
16 3rq4_A Histone-lysine N-methyl 99.9 1.7E-25 6E-30 207.1 6.8 133 114-254 103-241 (247)
17 3ep0_A PR domain zinc finger p 99.8 3.9E-20 1.3E-24 162.3 11.0 112 112-235 25-148 (170)
18 3db5_A PR domain zinc finger p 99.8 9.9E-20 3.4E-24 157.1 8.7 113 113-235 22-144 (151)
19 3dal_A PR domain zinc finger p 99.8 1E-18 3.5E-23 156.3 7.6 121 113-250 57-188 (196)
20 3ray_A PR domain-containing pr 99.7 3.6E-17 1.2E-21 149.6 5.2 134 114-264 72-215 (237)
21 3ihx_A PR domain zinc finger p 99.6 1.7E-15 5.9E-20 130.5 5.0 102 115-234 24-142 (152)
22 3n71_A Histone lysine methyltr 99.2 3.6E-11 1.2E-15 121.8 11.6 48 187-236 200-258 (490)
23 3qwp_A SET and MYND domain-con 98.9 1.1E-09 3.7E-14 109.1 4.8 47 186-236 200-246 (429)
24 3qww_A SET and MYND domain-con 98.8 4.1E-09 1.4E-13 105.1 5.5 54 187-244 201-265 (433)
25 2l8d_A Lamin-B receptor; DNA b 97.8 5.6E-05 1.9E-09 54.4 6.4 44 298-341 10-54 (66)
26 2dig_A Lamin-B receptor; tudor 97.7 8E-05 2.7E-09 53.8 6.3 45 297-341 12-57 (68)
27 3qii_A PHD finger protein 20; 97.6 0.00012 4.2E-09 56.0 6.8 54 288-343 12-66 (85)
28 3p8d_A Medulloblastoma antigen 97.6 0.00018 6.1E-09 52.8 6.5 46 297-344 6-52 (67)
29 2g3r_A Tumor suppressor P53-bi 97.4 0.00017 5.9E-09 58.4 5.6 45 296-341 3-48 (123)
30 1mhn_A SurviVal motor neuron p 97.3 0.00054 1.9E-08 48.9 6.7 45 300-344 6-52 (59)
31 4a4f_A SurviVal of motor neuro 97.2 0.00093 3.2E-08 48.5 6.7 46 299-344 10-57 (64)
32 3s6w_A Tudor domain-containing 97.2 0.0011 3.8E-08 46.3 6.6 45 300-344 4-50 (54)
33 2equ_A PHD finger protein 20-l 97.1 0.00087 3E-08 50.2 5.9 44 298-343 10-54 (74)
34 3qxy_A N-lysine methyltransfer 97.1 0.00037 1.3E-08 69.5 4.8 41 188-232 223-263 (449)
35 1ssf_A Transformation related 97.1 0.00097 3.3E-08 56.2 6.4 47 296-343 7-54 (156)
36 1g5v_A SurviVal motor neuron p 96.9 0.0023 7.8E-08 49.6 6.9 46 299-344 12-59 (88)
37 2h21_A Ribulose-1,5 bisphospha 96.9 0.00052 1.8E-08 68.0 4.0 46 188-233 190-242 (440)
38 3pnw_C Tudor domain-containing 96.6 0.0058 2E-07 46.0 7.1 46 299-344 19-66 (77)
39 2d9t_A Tudor domain-containing 96.6 0.0052 1.8E-07 46.3 6.6 46 299-344 11-58 (78)
40 2eqj_A Metal-response element- 96.5 0.0073 2.5E-07 43.8 6.6 46 297-343 13-59 (66)
41 2ldm_A Uncharacterized protein 95.5 0.00043 1.5E-08 52.7 0.0 43 299-343 8-51 (81)
42 3smt_A Histone-lysine N-methyl 96.3 0.0027 9.4E-08 64.0 4.4 43 188-233 273-315 (497)
43 4hcz_A PHD finger protein 1; p 96.2 0.016 5.5E-07 40.8 6.7 44 300-344 6-50 (58)
44 2m0o_A PHD finger protein 1; t 94.3 0.09 3.1E-06 39.0 5.7 48 296-344 25-73 (79)
45 3fdr_A Tudor and KH domain-con 93.6 0.16 5.6E-06 39.0 6.5 45 299-344 29-75 (94)
46 2e5p_A Protein PHF1, PHD finge 93.6 0.23 7.8E-06 35.9 6.5 45 298-343 10-55 (68)
47 2eqk_A Tudor domain-containing 93.5 0.13 4.5E-06 39.2 5.5 46 299-344 23-69 (85)
48 2e5q_A PHD finger protein 19; 93.1 0.21 7.2E-06 35.5 5.6 45 299-344 9-54 (63)
49 2xk0_A Polycomb protein PCL; t 92.2 0.71 2.4E-05 33.5 7.5 46 296-344 14-60 (69)
50 2diq_A Tudor and KH domain-con 91.4 0.22 7.6E-06 39.5 4.7 45 299-344 34-80 (110)
51 2wac_A CG7008-PA; unknown func 89.7 0.65 2.2E-05 40.7 6.7 43 300-344 54-98 (218)
52 3qww_A SET and MYND domain-con 88.7 0.31 1.1E-05 47.9 4.2 34 113-146 6-39 (433)
53 2xdp_A Lysine-specific demethy 85.4 1.2 4E-05 36.3 5.1 48 299-349 66-113 (123)
54 3qwp_A SET and MYND domain-con 85.3 0.75 2.6E-05 45.1 4.7 35 113-147 4-38 (429)
55 2qqr_A JMJC domain-containing 84.7 2 7E-05 34.6 6.2 50 299-351 65-114 (118)
56 4b9x_A TDRD1, tudor domain-con 82.9 2.5 8.6E-05 37.6 6.8 44 300-344 68-113 (226)
57 3ntk_A Maternal protein tudor; 82.4 2.3 7.8E-05 36.1 6.0 41 299-340 49-91 (169)
58 2hqx_A P100 CO-activator tudor 81.7 2.2 7.6E-05 38.2 6.0 42 300-343 68-111 (246)
59 4b9w_A TDRD1, tudor domain-con 76.9 4.7 0.00016 35.0 6.4 44 300-344 68-113 (201)
60 1y96_A Gemin6, SIP2, GEM-assoc 74.7 2.9 9.9E-05 31.8 3.8 34 295-328 11-44 (86)
61 3dlm_A Histone-lysine N-methyl 74.6 5.4 0.00018 35.4 6.0 47 298-344 69-120 (213)
62 3smt_A Histone-lysine N-methyl 73.7 2.3 8E-05 42.5 3.9 32 115-146 94-125 (497)
63 1i4k_A Putative snRNP SM-like 70.8 5.6 0.00019 29.0 4.5 31 296-326 9-39 (77)
64 1mgq_A SM-like protein; LSM, R 69.8 4.6 0.00016 30.1 3.9 34 294-327 18-51 (83)
65 1n9r_A SMF, small nuclear ribo 68.5 4.7 0.00016 30.9 3.8 35 293-327 23-58 (93)
66 2qqr_A JMJC domain-containing 65.1 5.5 0.00019 32.1 3.7 39 299-339 7-46 (118)
67 4emk_B U6 snRNA-associated SM- 64.7 5.7 0.0002 29.0 3.5 31 296-326 9-39 (75)
68 3qxy_A N-lysine methyltransfer 62.6 4.7 0.00016 39.6 3.5 33 115-147 39-72 (449)
69 1h64_1 SnRNP SM-like protein; 62.5 9.4 0.00032 27.7 4.3 32 296-327 9-40 (75)
70 3s6n_F Small nuclear ribonucle 61.8 8.2 0.00028 29.0 3.9 41 295-335 10-53 (86)
71 3h8z_A FragIle X mental retard 61.0 17 0.00059 29.5 6.0 45 297-343 60-112 (128)
72 3bdl_A Staphylococcal nuclease 60.9 11 0.00038 38.1 6.0 43 300-344 414-458 (570)
73 1i8f_A Putative snRNP SM-like 60.9 7.6 0.00026 28.7 3.6 32 295-326 15-46 (81)
74 4emh_A Probable U6 snRNA-assoc 59.1 9.3 0.00032 30.0 4.0 35 294-328 19-53 (105)
75 3bw1_A SMX4 protein, U6 snRNA- 58.1 8.3 0.00029 29.6 3.5 33 294-326 13-45 (96)
76 1d3b_B Protein (small nuclear 57.6 15 0.00052 27.5 4.9 35 293-327 6-40 (91)
77 4emg_A Probable U6 snRNA-assoc 56.5 10 0.00035 28.9 3.7 32 295-326 13-44 (93)
78 2fhd_A RAD9 homolog, DNA repai 54.5 32 0.0011 28.7 6.5 43 300-342 8-56 (153)
79 1th7_A SnRNP-2, small nuclear 54.4 12 0.00041 27.5 3.7 32 295-326 13-44 (81)
80 1b34_A Protein (small nuclear 53.8 16 0.00054 29.2 4.6 33 296-328 7-39 (119)
81 3s6n_G Small nuclear ribonucle 53.6 17 0.00057 26.4 4.4 34 294-327 7-40 (76)
82 1ljo_A Archaeal SM-like protei 52.5 17 0.00058 26.4 4.3 33 295-327 9-42 (77)
83 2xdp_A Lysine-specific demethy 49.9 4.9 0.00017 32.6 0.9 39 299-339 8-47 (123)
84 1wvo_A Sialic acid synthase; a 49.1 6.3 0.00021 29.3 1.4 17 213-229 8-24 (79)
85 4emk_A U6 snRNA-associated SM- 48.4 14 0.00049 28.3 3.4 33 295-327 24-56 (94)
86 2lua_A Protein MALE-specific l 46.6 14 0.00047 25.2 2.6 40 65-106 4-46 (52)
87 2l7y_A Putative endo-beta-N-ac 46.3 22 0.00076 27.5 4.1 42 304-347 9-51 (98)
88 1m5q_A SMAP3, small nuclear ri 45.0 22 0.00077 28.9 4.2 31 297-327 6-36 (130)
89 2h21_A Ribulose-1,5 bisphospha 44.0 9.9 0.00034 36.9 2.3 24 123-146 31-54 (440)
90 4emk_C U6 snRNA-associated SM- 43.7 23 0.00079 28.0 4.0 33 295-327 27-59 (113)
91 1t2y_A Metallothionein, MT; pr 41.6 15 0.00052 21.3 1.9 18 68-87 3-20 (26)
92 1d3b_A Protein (small nuclear 40.6 33 0.0011 24.8 4.2 32 296-327 10-41 (75)
93 2y9a_D Small nuclear ribonucle 39.0 79 0.0027 25.4 6.6 43 295-337 9-55 (126)
94 1b34_B Protein (small nuclear 36.2 34 0.0012 27.1 3.9 33 295-327 31-65 (118)
95 2lcd_A AT-rich interactive dom 41.5 8 0.00027 30.9 0.0 44 295-340 54-98 (118)
96 1h95_A CSD, Y-box binding prot 34.7 47 0.0016 24.3 4.3 27 313-339 8-34 (79)
97 1c9o_A CSPB, cold-shock protei 34.6 48 0.0016 23.3 4.1 21 315-335 3-23 (66)
98 1igq_A Transcriptional repress 33.8 38 0.0013 24.0 3.3 24 324-347 32-56 (62)
99 3dlm_A Histone-lysine N-methyl 33.5 63 0.0021 28.5 5.5 44 299-343 10-56 (213)
100 3pgw_B SM B; protein-RNA compl 32.6 27 0.00091 31.3 3.0 34 293-326 6-39 (231)
101 3cam_A Cold-shock domain famil 31.3 60 0.0021 22.9 4.2 24 315-338 3-26 (67)
102 2lcc_A AT-rich interactive dom 31.0 52 0.0018 24.0 3.9 37 297-333 5-46 (76)
103 1wgs_A MYST histone acetyltran 30.2 46 0.0016 27.1 3.8 35 298-333 13-52 (133)
104 2k5n_A Putative cold-shock pro 29.9 88 0.003 22.6 5.0 27 315-341 4-30 (74)
105 3a0j_A Cold shock protein; OB- 29.6 58 0.002 23.4 4.0 21 315-335 3-23 (73)
106 3i2z_B RNA chaperone, negative 29.2 58 0.002 23.2 3.9 27 314-340 6-32 (71)
107 2kcm_A Cold shock domain famil 27.2 58 0.002 23.6 3.6 20 316-335 3-22 (74)
108 1n3j_A A612L, histone H3 lysin 26.8 26 0.00088 27.4 1.7 20 211-231 15-34 (119)
109 1g6p_A Cold shock protein TMCS 26.4 46 0.0016 23.4 2.8 20 316-335 3-22 (66)
110 3aqq_A Calcium-regulated heat 26.1 74 0.0025 26.3 4.4 30 309-338 58-87 (147)
111 3k3s_A Altronate hydrolase; st 23.6 47 0.0016 26.0 2.6 16 214-229 34-49 (105)
112 2eko_A Histone acetyltransfera 23.5 1.1E+02 0.0038 22.9 4.6 42 295-336 7-54 (87)
113 2bh8_A 1B11; transcription, mo 23.5 83 0.0028 23.9 4.0 28 312-339 15-42 (101)
114 2fwk_A U6 snRNA-associated SM- 23.5 43 0.0015 26.6 2.4 32 295-326 32-63 (121)
115 2yty_A Cold shock domain-conta 22.9 69 0.0023 24.0 3.4 19 315-335 20-38 (88)
116 1v76_A RNAse P protein PH1771P 21.7 67 0.0023 24.6 3.1 35 285-319 3-40 (96)
117 3mea_A SAGA-associated factor 20.6 1.3E+02 0.0044 25.8 5.0 38 299-336 118-157 (180)
118 3mp6_A MBP, SGF29, maltose-bin 20.2 1.2E+02 0.0039 29.7 5.4 36 300-336 460-496 (522)
No 1
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=100.00 E-value=1.2e-58 Score=437.94 Aligned_cols=240 Identities=35% Similarity=0.678 Sum_probs=202.1
Q ss_pred HHhhCCCeEEeCCCCCC-----CCCCCCcEEecceeeccccccccC--CCCCCcccccCCC-----CCCCCCCCCCCccc
Q 018661 21 LKQIGNPVEFELPDWFI-----KPKAIPYVFIKRNIYLTKRIKRRL--EDDGIFCSCTASP-----GSSGVCDRDCHCGM 88 (352)
Q Consensus 21 ~~~~~~~~~f~lp~~~~-----~~~p~~f~~I~~n~~~~~~~~~~~--~~~~~~C~C~~~~-----~~~~~C~~~C~c~~ 88 (352)
+..+-...+|++|..+. ...||.|++|++|+|+.++.+... ..+.+.|+|.+.. .+...|+.+|+|++
T Consensus 12 ~~~~~~~~~f~~~~~~~~~~~~~~~p~~~~~i~~n~y~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~~~~~C~~~C~nr~ 91 (278)
T 3h6l_A 12 VGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRL 91 (278)
T ss_dssp --CEEEGGGGGCHHHHHHHHHTTSSCCCCEECSSCEECC--------------CCCCCCCCHHHHHHTCCSSCTTCTTGG
T ss_pred eecccChhhcCCcHHHHHHHhcccCCCCceEeeeeeccccccccccccccccceeeccCCCcccccccCCCCCCCCCCcc
Confidence 34444566777777652 457999999999999976433222 2246789999854 23458999999999
Q ss_pred eeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcce
Q 018661 89 LLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNF 168 (352)
Q Consensus 89 ~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~ 168 (352)
+++||++.|+|+..|+||++|++...+++|++++++||||||+++|++|+||+||+|+||+..++.+|...+......++
T Consensus 92 ~~~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t~~kG~Gl~A~~~I~~G~~I~EY~Gevi~~~e~~~R~~~y~~~~~~~~ 171 (278)
T 3h6l_A 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHY 171 (278)
T ss_dssp GTBCCCTTCTTGGGCSSCTTTTTCCCCEEEEECSSSCEEEEESSCBCTTCEEEECCCEEECHHHHHHHHHHHHHTTCCCC
T ss_pred eEeccCCCCCcCCCCCCccccCCCccCEEEEEcCCCceEEEeCCccCCCCEeEEeeeeecCHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777667788
Q ss_pred EEeeeccceeEeecccCCccccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC-CceecCCCCC
Q 018661 169 YLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA-DQDCHCGAAG 247 (352)
Q Consensus 169 y~~~l~~~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~-~~~C~Cgs~~ 247 (352)
|++.++.+++|||+.+||++|||||||+|||.++.|.+++.++|+|||+|||++||||||||++.+++. .+.|+||+++
T Consensus 172 y~~~l~~~~~IDa~~~GN~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~~~~~~~~~C~CGs~~ 251 (278)
T 3h6l_A 172 YFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSAN 251 (278)
T ss_dssp CEEEEETTEEEECSSEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTTEECSSCEECCCCCTT
T ss_pred eeecccCCeEEeCcccCChhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCCcCCCCCcEeECCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999988764 5899999999
Q ss_pred CccccCcCCCCCC
Q 018661 248 CRRKLGAKPSKPK 260 (352)
Q Consensus 248 Crg~l~~~~~~~~ 260 (352)
|||+|++++..+.
T Consensus 252 Crg~l~~~~~~~~ 264 (278)
T 3h6l_A 252 CRGYLGGENRVSI 264 (278)
T ss_dssp CCSEECCC-----
T ss_pred CeeecCCCCcCCc
Confidence 9999998765543
No 2
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=414.32 Aligned_cols=216 Identities=38% Similarity=0.706 Sum_probs=195.4
Q ss_pred CCCCCCcEEecceeecccccc-ccCCCCCCcccccCCCCCCCCCCCCCCccceeeeCCC-CCCCCCCCCCcccccCCccc
Q 018661 38 KPKAIPYVFIKRNIYLTKRIK-RRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSS-GCKCGNSCLNKPFQNRPVKK 115 (352)
Q Consensus 38 ~~~p~~f~~I~~n~~~~~~~~-~~~~~~~~~C~C~~~~~~~~~C~~~C~c~~~~~eC~~-~C~C~~~C~Nr~~q~~~~~~ 115 (352)
..+||+|++|++|.++.+... ....++...|+|++..++.++|+.+|+|+++++||++ .|+|+..|+||++|++...+
T Consensus 14 ~~~pp~y~~i~~n~~~~~~~~~~~~~~~~~~C~C~~~~~~~C~~~~~C~nr~~~~EC~~~~C~c~~~C~Nr~~q~~~~~~ 93 (232)
T 3ooi_A 14 DKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGGRCQNQCFSKRQYPE 93 (232)
T ss_dssp CCSCCCCEECSSCEECTTCCCCCCCGGGSCCCSCCTTSSSTTCTTSCCHHHHTTBCCCTTTCTTGGGCCCCHHHHTCCCC
T ss_pred CCCCCCceEeeccccccccccccCCcccCCcccccCCCCCCCCCCCCCcCcCceeEeCCCCCCCCCCcCCccccCCCCcc
Confidence 578999999999999875322 2334556789999876555555688999999999998 69999999999999999999
Q ss_pred EEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCccccccCCC
Q 018661 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSC 195 (352)
Q Consensus 116 l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~aRfiNHSC 195 (352)
++|++++++||||||+++|++|++|+||+|+|++..++.+|...+......++|++.++.+++|||+.+||++|||||||
T Consensus 94 lev~~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC 173 (232)
T 3ooi_A 94 VEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCC 173 (232)
T ss_dssp EEEEECSSSSEEEEESSCBCTTCEEEECCEEEECHHHHHHHHHHHHHTTCCCCCEEEEETTEEEEEEEEECGGGGCEECS
T ss_pred EEEEEcCCceeEEEECceecCCceeeEeeeeccCHHHHHHHHHHHhhcCCCceeeeecCcceEEeccccccccccccccC
Confidence 99999999999999999999999999999999999999988776666667788999999999999999999999999999
Q ss_pred CCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC-CceecCCCCCCccccC
Q 018661 196 CPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA-DQDCHCGAAGCRRKLG 253 (352)
Q Consensus 196 ~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~-~~~C~Cgs~~Crg~l~ 253 (352)
+||+.++.|.+++..+++|||+|||++||||||||++.+++. .+.|+|||++|||+||
T Consensus 174 ~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~C~CGs~~CrG~lG 232 (232)
T 3ooi_A 174 QPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFLG 232 (232)
T ss_dssp SCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTCTTCBCCCCCTTCCSBCC
T ss_pred CCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCCCCcEeECCCCcCcCcCC
Confidence 999999999999999999999999999999999999988765 5899999999999997
No 3
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=6.4e-55 Score=400.70 Aligned_cols=213 Identities=36% Similarity=0.741 Sum_probs=186.4
Q ss_pred CcEEecceeeccccccccCCCCCCcccccCCCC-CCCCCCCCCCccceeeeCCC-CCCCCCCCCCcccccCCcc-cEEEE
Q 018661 43 PYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPG-SSGVCDRDCHCGMLLSSCSS-GCKCGNSCLNKPFQNRPVK-KMKLV 119 (352)
Q Consensus 43 ~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~-~~~~C~~~C~c~~~~~eC~~-~C~C~~~C~Nr~~q~~~~~-~l~v~ 119 (352)
.|++|++|+|+..+.. ...+...|+|++... .+..|+++|+|+++++||++ .|+|+..|+||++|++... +++|+
T Consensus 2 ~~~~i~~n~~~~~~~~--~~~~~~~C~C~~~~~~~~~~c~~~C~nr~~~~EC~~~~C~C~~~C~Nr~~q~~~~~~~lev~ 79 (222)
T 3ope_A 2 SYKKIRSNVYVDVKPL--SGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERF 79 (222)
T ss_dssp CCEECSSCEECSCCCB--CCCCCCCCCCCCCSCSSSCSSCSCCTTGGGTBCCCTTTCTTTTSCSSCTTTTTCCCSCCEEE
T ss_pred CccCcccceeeeeccC--ccccCccccCcCCCcCCCCCCcccCcCcCeEeEeCCCCCcCCCCCCCceEeCCCccccEEEE
Confidence 5999999999986543 345678999997643 34689999999999999998 7999999999999998765 59999
Q ss_pred EecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCccccccCCCCCCc
Q 018661 120 QTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNT 199 (352)
Q Consensus 120 ~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~aRfiNHSC~PN~ 199 (352)
+++++||||||+++|++|++|+||+|+|++.+++.+|...... ...+.|++.++.+++|||+.+||++|||||||+||+
T Consensus 80 ~t~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~-~~~~~y~~~l~~~~~IDa~~~Gn~aRfiNHSC~PN~ 158 (222)
T 3ope_A 80 RAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYH-NHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNC 158 (222)
T ss_dssp ECTTSSEEEECSSCBCTTCEEEECCSEEECHHHHHHHHHHTST-TCCSCCEEEEETTEEEECSSEECGGGGCEECSSCSE
T ss_pred EcCCCceEEEECceECCCCEEEEecceecCHHHHHHHHHHHhc-ccCCeEEEecCCCEEEeCccccccceeeccCCCCCe
Confidence 9999999999999999999999999999999999888654332 234578999999999999999999999999999999
Q ss_pred ceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC--CceecCCCCCCccccCcCCCC
Q 018661 200 EMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA--DQDCHCGAAGCRRKLGAKPSK 258 (352)
Q Consensus 200 ~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~--~~~C~Cgs~~Crg~l~~~~~~ 258 (352)
.++.|.+++.++++|||+|||++||||||||++.+|+. .+.|+|||++|||+|++++..
T Consensus 159 ~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~~C~CGs~~Crg~i~~~~q~ 219 (222)
T 3ope_A 159 EMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQR 219 (222)
T ss_dssp EEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCCSCCCBCCCCCTTCCSBCC-----
T ss_pred EeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCCcCCCEeeCCCcCCCCccCCCCcc
Confidence 99999999999999999999999999999999988754 589999999999999997653
No 4
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=100.00 E-value=3.2e-50 Score=384.38 Aligned_cols=236 Identities=27% Similarity=0.440 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHhhCCCeEEeCCCCCCCCCCC--CcEEecceeeccccccccCCCCCCcccccCCCCCCCCCCC----CC
Q 018661 11 SRIGHAFNKLLKQIGNPVEFELPDWFIKPKAI--PYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDR----DC 84 (352)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~f~lp~~~~~~~p~--~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~----~C 84 (352)
...+.+|++.++.+ |.+++++-+..+...|| .|+||.++++..... .........|+|.+. ..|.. +|
T Consensus 12 ~~~~~~~~~~~~g~-e~~pi~~~N~vd~~~~p~~~F~Yi~~~~~~~~~~-~~~~~~~~gC~C~~~----~~C~~~~~~~C 85 (299)
T 1mvh_A 12 YEKRELFRKKLREI-EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVI-PPDPNFQSGCNCSSL----GGCDLNNPSRC 85 (299)
T ss_dssp HHHHHHHHHHHHTS-SSSCEEEECSSCCCCCSCCCSEECSSCEECTTCC-CCCGGGCCCCCCCCS----SSSCTTCTTTC
T ss_pred hHHHHHHHHHHcCc-CCCCEEEEeCCCCCCCCCCCcEEccceecCCCcC-cCCCcCCCCCcCcCC----CCcCCCCCCCC
Confidence 45677888888866 56677776666655554 599999999865422 222223478999851 12432 44
Q ss_pred Ccc----------------------ceeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEE
Q 018661 85 HCG----------------------MLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIE 142 (352)
Q Consensus 85 ~c~----------------------~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~e 142 (352)
.|. .+++||++.|+|+..|+||++|++...+++|++++.+||||||+++|++|+||+|
T Consensus 86 ~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~~G~Gv~A~~~I~kG~~I~E 165 (299)
T 1mvh_A 86 ECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITC 165 (299)
T ss_dssp SSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEE
T ss_pred ccccccccccccccCCCCceeecCCCCeEeCCCCCCCCCCcCCccccccccccEEEEEcCCCcceEeeCceeCCCCEEEE
Confidence 442 2479999999999999999999999999999999999999999999999999999
Q ss_pred EeeeEechhhHHHHHHHhhhcCCcceEEeeecc-----ceeEeecccCCccccccCCCCCCcceEEEEEC----CeEEEE
Q 018661 143 YVGEVIDDQTCEERLWKMKHLGETNFYLCEINR-----DMVIDATYKGNKSRYINHSCCPNTEMQKWIID----GETRIG 213 (352)
Q Consensus 143 y~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~-----~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~----g~~~i~ 213 (352)
|+||||+.+++++|...+... ...|+|.++. .++|||+.+||++|||||||+||+.+..+..+ +.++++
T Consensus 166 Y~Gevi~~~ea~~R~~~y~~~--~~~Y~f~l~~~~~~~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~ 243 (299)
T 1mvh_A 166 YLGEVITSAEAAKRDKNYDDD--GITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLA 243 (299)
T ss_dssp CCCEEEEHHHHHHHHTTCCSC--SCCCEEEECSSCSSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEE
T ss_pred eeeEECcHHHHHHHHHhhhcc--CceEEEEecCCCCCccEEEeCcccCChhheEeecCCCCeEEEEEEeecCCCCceEEE
Confidence 999999999998887655332 3468888764 68999999999999999999999998766654 358999
Q ss_pred EEEccCCCCCCeEEEcCCCCCCC---------------CCceecCCCCCCccccCc
Q 018661 214 IFATRDIKKGENLTYDYQFVQFG---------------ADQDCHCGAAGCRRKLGA 254 (352)
Q Consensus 214 i~A~rdI~~GEELT~dY~~~~~~---------------~~~~C~Cgs~~Crg~l~~ 254 (352)
|||+|||++||||||||+..++. ..+.|+|||++|||+|++
T Consensus 244 ~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~k~~~~C~CGs~~Crg~l~g 299 (299)
T 1mvh_A 244 FFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLFG 299 (299)
T ss_dssp EEESSCBCTTCBCEECCCTTSSSSCCC-----------------------------
T ss_pred EEEccCcCCCCEEEEEcCCcccccccccccccccccccCCcCcCCCCCCCccccCC
Confidence 99999999999999999988771 126899999999999864
No 5
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=100.00 E-value=3.1e-49 Score=376.04 Aligned_cols=233 Identities=26% Similarity=0.441 Sum_probs=181.8
Q ss_pred HHhhCCCeEEeCCCCCCCCCCCCcEEecceeeccccccccCCCCCCcccccCC-CC-CCCCCC--------CCCC-----
Q 018661 21 LKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTAS-PG-SSGVCD--------RDCH----- 85 (352)
Q Consensus 21 ~~~~~~~~~f~lp~~~~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~-~~-~~~~C~--------~~C~----- 85 (352)
+++....+.+++|-......|+.|+||.++++..............+|+|... |. ..+.|. ..|.
T Consensus 15 ~Dis~G~E~~pi~~~n~~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~~~C~~~~C~C~~~~~~y~~~~~l~~~~~ 94 (290)
T 3bo5_A 15 LDVACGQENLPVGAWPPGAAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGS 94 (290)
T ss_dssp SCTTTTCSSSCCEEESTTCCCCCCEECSSCEECTTCSSCTTSCCCCCCCCCSSCCCTTTCGGGTTSCSBCTTSCBCC---
T ss_pred hhhhCCCCCCceeeECCCCCCCCcEEeeceecCCCCcCCcccccCCCCCCCCCCcCCCCCcchhhcCccCcccccccccc
Confidence 34455555566655444677999999999987544222222222468999863 22 122231 1121
Q ss_pred ---ccceeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhh
Q 018661 86 ---CGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKH 162 (352)
Q Consensus 86 ---c~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~ 162 (352)
++.+++||++.|.|+..|+||++|++...+++|++++.+||||||+++|++|+||+||+||||+.+++++|...+..
T Consensus 95 ~~~~~~~~~EC~~~C~C~~~C~Nr~~q~g~~~~l~V~~s~~~G~Gl~A~~~I~~G~~I~EY~Gevi~~~e~~~R~~~~~~ 174 (290)
T 3bo5_A 95 GGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTK 174 (290)
T ss_dssp --CCCCCEECCCTTCCSCTTCTTCCGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCEEEECHHHHHHHHTTCCS
T ss_pred ccccCCceEeCCCCCCCCCCCCCeEcccCCcccEEEEEcCCCcceEeECCccCCCCEEEEEeeEEeCHHHHHHHHHhhcc
Confidence 23468999999999999999999999999999999999999999999999999999999999999999888644322
Q ss_pred cCCcceEEeeecc--------ceeEeecccCCccccccCCCCCCcceEEEEECC-eEEEEEEEccCCCCCCeEEEcCCCC
Q 018661 163 LGETNFYLCEINR--------DMVIDATYKGNKSRYINHSCCPNTEMQKWIIDG-ETRIGIFATRDIKKGENLTYDYQFV 233 (352)
Q Consensus 163 ~~~~~~y~~~l~~--------~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~g-~~~i~i~A~rdI~~GEELT~dY~~~ 233 (352)
....|++.+.. .++|||+.+||++|||||||+||+.++.|.+++ .++++|||+|||++||||||||+..
T Consensus 175 --~~~~Y~~~l~~~~~~~~~~~~~IDa~~~GN~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~ 252 (290)
T 3bo5_A 175 --SDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGR 252 (290)
T ss_dssp --SCCCCCEEEEECC-----EEEEEEEEEEECGGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSC
T ss_pred --cCCcceeeecccccCCccceeEEeeeecCCchheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCc
Confidence 23346666542 478999999999999999999999998888776 5899999999999999999999987
Q ss_pred CCC--------------CCceecCCCCCCccccCcC
Q 018661 234 QFG--------------ADQDCHCGAAGCRRKLGAK 255 (352)
Q Consensus 234 ~~~--------------~~~~C~Cgs~~Crg~l~~~ 255 (352)
+|. ..+.|+|||++|||+|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~l~~~ 288 (290)
T 3bo5_A 253 YLNLTVSASKERLDHGKLRKPCYCGAKSCTAFLPFD 288 (290)
T ss_dssp TTCCSSSEEEEEEECSSCCCBCCCCCTTCCSBCCCE
T ss_pred cccccccccccccccCCCCccccCCCcCCCccCCCC
Confidence 763 1478999999999999753
No 6
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=100.00 E-value=5.8e-49 Score=376.49 Aligned_cols=227 Identities=26% Similarity=0.464 Sum_probs=161.6
Q ss_pred CCeEEeCCCCCCC-CCCCCcEEecceeeccccccccCCCCCCcccccC--CCC-CCCCCCCC------------------
Q 018661 26 NPVEFELPDWFIK-PKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTA--SPG-SSGVCDRD------------------ 83 (352)
Q Consensus 26 ~~~~f~lp~~~~~-~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~--~~~-~~~~C~~~------------------ 83 (352)
|.+++.+-+..+. ..|+.|+||+++++.... .........+|+|.. +|. +.+.|...
T Consensus 8 e~~pi~~~N~vd~~~~P~~F~Yi~~~~~~~~~-~~~~~~~~~gC~C~~~~~C~~~~C~C~~~~~~~~~~~~~~~~~~~~~ 86 (302)
T 1ml9_A 8 AQLPISIVNREDDAFLNPNFRFIDHSIIGKNV-PVADQSFRVGCSCASDEECMYSTCQCLDEMAPDSDEEADPYTRKKRF 86 (302)
T ss_dssp -CCCEEEECSSSSCCCCTTCEECSSCEECTTC-CCCCGGGCCCCCCSSTTGGGSTTSGGGTTSCCC-----------CCS
T ss_pred CCCCEEEEeCCCCCCCCCCCEEeeeeecCCCc-cccCcccCCCccCcCCCCcCCCCCcChhhcccccccccccccccccc
Confidence 4455665555544 458899999999986542 222223357899987 332 12233110
Q ss_pred ----------CC------ccceeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeE
Q 018661 84 ----------CH------CGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEV 147 (352)
Q Consensus 84 ----------C~------c~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gev 147 (352)
+. .+.+++||++.|+|+..|.||++|++...+++|++++.+||||||+++|++|+||+||+|||
T Consensus 87 ~y~~~g~~~g~l~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~kG~Gv~A~~~I~~G~~I~EY~Gev 166 (302)
T 1ml9_A 87 AYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI 166 (302)
T ss_dssp SBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCSCEEEEECSSSCEEEECSSCBCTTCEEEECCCEE
T ss_pred ccccCCcccceeehhcccCCCCeEecCCCCCCCCCCCCcccccCCccceEEEEcCCCceEEEECCeeCCCCEEEEEeeEE
Confidence 00 12347999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHHHHhhhcCCcceEEeeecc--------------ceeEeecccCCccccccCCCCCCcceEEEEEC----Ce
Q 018661 148 IDDQTCEERLWKMKHLGETNFYLCEINR--------------DMVIDATYKGNKSRYINHSCCPNTEMQKWIID----GE 209 (352)
Q Consensus 148 i~~~e~~~r~~~~~~~~~~~~y~~~l~~--------------~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~----g~ 209 (352)
|+.+++++|...+......+.|+|.++. .++|||+.+||++|||||||+||+.+..+..+ +.
T Consensus 167 i~~~e~~~R~~~~~~~~~~~~Y~f~l~~~~~~~~~d~~~~~~~~~IDa~~~GN~arfiNHSC~PN~~~~~~~~~~~~~~~ 246 (302)
T 1ml9_A 167 ITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHI 246 (302)
T ss_dssp ECHHHHHHHHHHSCGGGCHHHHEEECCSSCCSSSSCHHHHSCCCEEECSSEECGGGGCEECSSCSEEEEEEESSGGGGGG
T ss_pred eCHHHHHHHHHHHhhhcCCceEEEEeccccCcccccccccCCcEEEeCcccCCHHHhcccCCCCCeeEEEEEeccCCCCc
Confidence 9999999887655433345668888753 68999999999999999999999988765433 23
Q ss_pred EEEEEEEccCCCCCCeEEEcCCCCCCCC------------CceecCCCCCCccccC
Q 018661 210 TRIGIFATRDIKKGENLTYDYQFVQFGA------------DQDCHCGAAGCRRKLG 253 (352)
Q Consensus 210 ~~i~i~A~rdI~~GEELT~dY~~~~~~~------------~~~C~Cgs~~Crg~l~ 253 (352)
++++|||+|||++||||||||++.++.. .+.|+|||++|||+|.
T Consensus 247 ~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Crg~l~ 302 (302)
T 1ml9_A 247 HDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYLW 302 (302)
T ss_dssp CEEEEEESSCBCTTCEEEECTTC---------------------------------
T ss_pred eEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCccccC
Confidence 7999999999999999999999876642 2689999999999973
No 7
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=371.92 Aligned_cols=240 Identities=30% Similarity=0.477 Sum_probs=186.0
Q ss_pred chhhHHHHHHHHHHhhCC-CeEEeCCCCCCCCC-CCCcEEecceeeccccccccCCCCCCcccccCCCCCCCCCCCCCCc
Q 018661 9 DNSRIGHAFNKLLKQIGN-PVEFELPDWFIKPK-AIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC 86 (352)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~f~lp~~~~~~~-p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c 86 (352)
+|....+.|++.++..+. ..++.+.+.++... |+.|+||+++++...- .. ......+|+|.. |.....|...+..
T Consensus 22 ~q~~~~~~w~~~~~~~~~~~~~i~~~N~vd~~~~P~~f~yi~~~~~~~~~-~~-~~~~~~gC~C~~-C~~~~cc~~~~~~ 98 (300)
T 2r3a_A 22 KQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGI-SL-VNEATFGCSCTD-CFFQKCCPAEAGV 98 (300)
T ss_dssp HHHHHHHHHHHHHHHHCCSSSCEEEECSSSCCCCCSSCEECSSCEECTTC-CC-C---CCCCCCSS-TTTSSCHHHHTTS
T ss_pred hhHHHHHHHHHHhcccccCCCCeEEEeCcCCccCCCCEEECcccccCCCC-cc-CCCCCCCcCCcC-CCCCCcchhhccC
Confidence 455566778888887643 45667767766544 5589999999875442 11 123457899985 4322112111111
Q ss_pred --------------cceeeeCCCCCCCCCCCCCcccccCCcccEEEEEec-CCCcEEEeccccCCCceEEEEeeeEechh
Q 018661 87 --------------GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTE-KCGAGIVADEDIKRGEFVIEYVGEVIDDQ 151 (352)
Q Consensus 87 --------------~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~-~kG~GlfA~~~I~~G~~I~ey~Gevi~~~ 151 (352)
..+++||++.|.|+..|+||++|++...+++|+++. .+||||||+++|++|+||+||+||||+.+
T Consensus 99 ~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~vfrt~~~kG~Gl~A~~~I~~G~~I~EY~Gevi~~~ 178 (300)
T 2r3a_A 99 LLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSE 178 (300)
T ss_dssp CCSBCTTSCBCSCTTCCEECCCTTSSCCTTCTTCSGGGCCCSCEEEEECSSSCCEEEEESSCBCTTCEEEEECCEEEEHH
T ss_pred ccccccCCcEeccCCCcEEeCCCCCCCCCcCCCccccccccccEEEEEeCCCceEEEEeCccccCCCEeEEEeeEEecHH
Confidence 135899999999999999999999999999999985 79999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCCcceEEeeec---cceeEeecccCCccccccCCCCCCcceEEEEEC----CeEEEEEEEccCCCCCC
Q 018661 152 TCEERLWKMKHLGETNFYLCEIN---RDMVIDATYKGNKSRYINHSCCPNTEMQKWIID----GETRIGIFATRDIKKGE 224 (352)
Q Consensus 152 e~~~r~~~~~~~~~~~~y~~~l~---~~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~----g~~~i~i~A~rdI~~GE 224 (352)
++++|...+...+ ..|+|.++ ..++|||+.+||++|||||||+||+.+..|.++ +.++++|||+|||++||
T Consensus 179 ea~~R~~~y~~~~--~~Y~f~l~~~~~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GE 256 (300)
T 2r3a_A 179 EAERRGQFYDNKG--ITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGE 256 (300)
T ss_dssp HHHHHHHTCCHHH--HHTEEECCSSCSSEEEECSSEECGGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTC
T ss_pred HHHHHHHHhhhcc--ccEEEEeecCCceEEEecccccChHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCC
Confidence 9988865443322 34677665 568999999999999999999999999888765 35899999999999999
Q ss_pred eEEEcCCCCCCC---------------CCceecCCCCCCccccC
Q 018661 225 NLTYDYQFVQFG---------------ADQDCHCGAAGCRRKLG 253 (352)
Q Consensus 225 ELT~dY~~~~~~---------------~~~~C~Cgs~~Crg~l~ 253 (352)
||||||++.... ..+.|+|||++|||+|.
T Consensus 257 ELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~Crg~ln 300 (300)
T 2r3a_A 257 ELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300 (300)
T ss_dssp EEEECGGGSSCC--------------CCCCBCCCCCTTCCSBCC
T ss_pred EEEEECCCCccccccccccccccccccCCCEeeCCCccccccCc
Confidence 999999976432 14789999999999973
No 8
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=100.00 E-value=3.8e-49 Score=374.80 Aligned_cols=218 Identities=31% Similarity=0.558 Sum_probs=173.0
Q ss_pred HHhhCCCeEEeCCCCCCC-CCCCCcEEecceeeccccccccCCCCCCcccccCCCCCCCCCCCCCCcc------------
Q 018661 21 LKQIGNPVEFELPDWFIK-PKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCG------------ 87 (352)
Q Consensus 21 ~~~~~~~~~f~lp~~~~~-~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c~------------ 87 (352)
++...|.+++++-+.++. ..|+.|+||.++++..............+|+|..+|.+ .+|.|.
T Consensus 35 is~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~~~~~~~~gC~C~~~C~~-----~~C~C~~~~~~~~y~~~g 109 (287)
T 3hna_A 35 IARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSS-----SNCMCGQLSMRCWYDKDG 109 (287)
T ss_dssp TTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCCCBGGGCCCCCCSSSSCS-----TTCHHHHHTSSCCBCTTS
T ss_pred hCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCccccccCCCCCCCcCcCCCCC-----CCCcCcccCcccccCCCC
Confidence 333444444444444443 45789999999987544211122223468999975532 245443
Q ss_pred -----------ceeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHH
Q 018661 88 -----------MLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEER 156 (352)
Q Consensus 88 -----------~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r 156 (352)
.+++||++.|.|+..|+||++|++...+++|++++++||||||+++|++|++|+||+|+|++.++++.|
T Consensus 110 ~l~~~~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~l~v~~t~~kG~Gv~A~~~I~~G~~I~eY~Gevi~~~e~~~r 189 (287)
T 3hna_A 110 RLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR 189 (287)
T ss_dssp CBCTTCCSSSCCCEECCCTTSSSCTTCSSCSGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEEECEEEEEHHHHHTC
T ss_pred cccccccccCCceEEecCCCCCCCCCCCCcccCcCCcccEEEEEcCCCceEEEeCcccCCCCEEEEeeeEEccHHHHhhh
Confidence 348999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred HHHhhhcCCcceEEeeeccc----eeEeecccCCccccccCCCCCCcceEEEEECC----eEEEEEEEccCCCCCCeEEE
Q 018661 157 LWKMKHLGETNFYLCEINRD----MVIDATYKGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFATRDIKKGENLTY 228 (352)
Q Consensus 157 ~~~~~~~~~~~~y~~~l~~~----~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~g----~~~i~i~A~rdI~~GEELT~ 228 (352)
..+.|++.++.. ++|||+.+||++|||||||+||+.++.+++.+ .++|+|||+|||++||||||
T Consensus 190 --------~~~~Y~f~l~~~~~~~~~IDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~ 261 (287)
T 3hna_A 190 --------EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGF 261 (287)
T ss_dssp --------SCCTTEEESCCSSSSCEEEEEEEEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEE
T ss_pred --------cccceEEEeccCCCceEEEeccccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEE
Confidence 234577777543 69999999999999999999999988776543 46999999999999999999
Q ss_pred cCCCCCCC---CCceecCCCCCCccc
Q 018661 229 DYQFVQFG---ADQDCHCGAAGCRRK 251 (352)
Q Consensus 229 dY~~~~~~---~~~~C~Cgs~~Crg~ 251 (352)
||+..+|. ..+.|+|||++|||+
T Consensus 262 dYg~~~~~~~~~~~~C~CGs~~CRgs 287 (287)
T 3hna_A 262 DYGERFWDIKGKLFSCRCGSPKCRHS 287 (287)
T ss_dssp CCCHHHHHHHTTTCCCCCCCTTCSCC
T ss_pred eCCCcccccCCCcCEeeCCCCCCCCC
Confidence 99976653 458999999999985
No 9
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=100.00 E-value=4.7e-40 Score=295.14 Aligned_cols=152 Identities=36% Similarity=0.611 Sum_probs=133.3
Q ss_pred CCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEe
Q 018661 101 NSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVID 180 (352)
Q Consensus 101 ~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~ID 180 (352)
..|.++.+|++...+++|++++.+||||||+++|++|++|+||+|+|++..+++.|...+...+ ...|+|.++..++||
T Consensus 39 ~~~~~~~l~~~~~~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gevi~~~e~~~R~~~y~~~~-~~~Y~f~l~~~~~ID 117 (192)
T 2w5y_A 39 MPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKG-IGCYMFRIDDSEVVD 117 (192)
T ss_dssp HHHHHTTHHHHHHHHEEEEECSSSSEEEEESSCBCTTCEEEECCSEEEEGGGHHHHHHHHHHHT-CCCCEEECSSSEEEE
T ss_pred cchhHHHHhccCCCcEEEEEcCCceeEEEECcccCCCCEEEEeeeeEechHHHHHHHHHHhhcC-CceeeeeecCceEEE
Confidence 3567788888888899999999999999999999999999999999999999888765554433 346889999999999
Q ss_pred ecccCCccccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC--CceecCCCCCCccccC
Q 018661 181 ATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA--DQDCHCGAAGCRRKLG 253 (352)
Q Consensus 181 a~~~GN~aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~--~~~C~Cgs~~Crg~l~ 253 (352)
|+..||++|||||||+|||.+..|.++|..+++|||+|||++|||||+||+..++.. .+.|.|||++|||+|.
T Consensus 118 a~~~Gn~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~~~~~~C~Cgs~~Crg~ln 192 (192)
T 2w5y_A 118 ATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192 (192)
T ss_dssp CTTTCCGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-------CCBCCCCCTTCCSBCC
T ss_pred CccccChhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcCCCCceeECCCCCCcCcCC
Confidence 999999999999999999999988899999999999999999999999999988753 6899999999999973
No 10
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=100.00 E-value=1.1e-34 Score=254.27 Aligned_cols=132 Identities=29% Similarity=0.470 Sum_probs=116.9
Q ss_pred CCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCc---ceEEeeeccceeEe
Q 018661 104 LNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGET---NFYLCEINRDMVID 180 (352)
Q Consensus 104 ~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~---~~y~~~l~~~~~ID 180 (352)
.++++|++...+++|+.++++||||||+++|++|++|+||.|++++..++..|...+...... .+++..++..++||
T Consensus 20 ~~~~~q~g~~~~l~v~~~~~kG~Gl~A~~~I~~G~~I~ey~Gevi~~~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~iD 99 (166)
T 3f9x_A 20 IDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVD 99 (166)
T ss_dssp HHHHHHHTCCTTEEEEEETTTEEEEEESSCBCTTCEEEECCSEEEEHHHHHHHHHHHTTCTTSCCCEEEEEETTEEEEEE
T ss_pred HHHHHHcCCccCeEEEECCCceeEEEECCCcCCCCEEEEeeceEcCHHHHHHHHHHHhhccCCCceEEEEecCCCCeEEe
Confidence 356788899999999999999999999999999999999999999999999887666543333 23344477889999
Q ss_pred eccc-CCccccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCC
Q 018661 181 ATYK-GNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQF 235 (352)
Q Consensus 181 a~~~-GN~aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~ 235 (352)
|+.. ||++|||||||+|||.+..+.+++.++++|||+|||++||||||||++.+.
T Consensus 100 a~~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 100 ATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp CCSCCSCSGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCH
T ss_pred chhcCCChhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChh
Confidence 9996 999999999999999999999999999999999999999999999998764
No 11
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.96 E-value=4.5e-29 Score=233.73 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=112.4
Q ss_pred ceeeeCCCCCCCCCCCCCcccccC-CcccEEEEEecCC--CcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcC
Q 018661 88 MLLSSCSSGCKCGNSCLNKPFQNR-PVKKMKLVQTEKC--GAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164 (352)
Q Consensus 88 ~~~~eC~~~C~C~~~C~Nr~~q~~-~~~~l~v~~s~~k--G~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~ 164 (352)
...++|...|.. ..|.|..+... ....++|.+++.+ ||||||+++|++|++|+||+|++|+..++++|...+.
T Consensus 83 ~~~~~~d~~~~~-~i~~~~~~~~~~~~~~~~v~~S~i~~kG~GvfA~~~I~~G~~I~eY~Gevi~~~e~~~R~~~~~--- 158 (261)
T 2f69_A 83 NSVYHFDKSTSS-CISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALN--- 158 (261)
T ss_dssp CCEECCCCCCSS-CSCSCTTSCCHHHHTTEEEEECSSTTCCEEEEESSCBCTTCEEEEECCEEECHHHHHTSCGGGC---
T ss_pred CceEecCcccCc-ceeCccccCCcccCceEEEEecCCCCCceEEEECcccCCCCEEEEEeeEEeCHHHHHHHhhhhc---
Confidence 347778776432 34666665543 2457899998655 9999999999999999999999999999887654331
Q ss_pred CcceEEeeeccceeEeec--------ccCCccccccCCCCCCcceEEEEECCe-EEEEEEEccCCCCCCeEEEcCCCCCC
Q 018661 165 ETNFYLCEINRDMVIDAT--------YKGNKSRYINHSCCPNTEMQKWIIDGE-TRIGIFATRDIKKGENLTYDYQFVQF 235 (352)
Q Consensus 165 ~~~~y~~~l~~~~~IDa~--------~~GN~aRfiNHSC~PN~~~~~~~~~g~-~~i~i~A~rdI~~GEELT~dY~~~~~ 235 (352)
.|.+.++..++|||+ ..||++|||||||+|||.+..|...+. ..+.|||+|||++||||||||++...
T Consensus 159 ---~~~f~l~~~~~IDa~~~~~~~~~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~ 235 (261)
T 2f69_A 159 ---GNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS 235 (261)
T ss_dssp ---SSCEECSSSCEEECCTTTTSTTTCCSCCGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSC
T ss_pred ---cceeeecCCeEEEccccccccccccccceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCccc
Confidence 356788999999995 599999999999999999988744343 34499999999999999999998653
No 12
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.95 E-value=3.6e-29 Score=207.86 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=96.9
Q ss_pred cccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCcccccc
Q 018661 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYIN 192 (352)
Q Consensus 113 ~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~aRfiN 192 (352)
.++++|.+++.+||||||+++|++|++|+||.|++++.+++.. ....|++.++. |+...+|.+||||
T Consensus 3 ~~~~~v~~s~~~G~GvfA~~~I~~G~~I~ey~g~vi~~~e~~~---------~~~~y~f~~~~----d~~~~~~~~~~~N 69 (119)
T 1n3j_A 3 NDRVIVKKSPLGGYGVFARKSFEKGELVEECLCIVRHNDDWGT---------ALEDYLFSRKN----MSAMALGFGAIFN 69 (119)
T ss_dssp CSSEEEECSCSSCCEEEECCCBCSCEEECCCCCEEECSHHHHH---------HSCSEEEEETT----EEEEESSSHHHHH
T ss_pred CCCEEEEECCCceeEEEECCcCCCCCEEEEeeEEEECHHHHhh---------ccCCeEEEeCC----ccccccCceeeec
Confidence 4688999999999999999999999999999999999877654 12347777766 8999999999999
Q ss_pred CCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC
Q 018661 193 HSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA 237 (352)
Q Consensus 193 HSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~ 237 (352)
|||+|||.+.. ..+..++.++|+|||++|||||+||+..+|+.
T Consensus 70 Hsc~pN~~~~~--~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 70 HSKDPNARHEL--TAGLKRMRIFTIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp SCSSCCCEEEE--CSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred cCCCCCeeEEE--ECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence 99999998854 45667899999999999999999999998865
No 13
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=230.11 Aligned_cols=135 Identities=27% Similarity=0.374 Sum_probs=104.0
Q ss_pred ccEEEEEe-----cCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCcc
Q 018661 114 KKMKLVQT-----EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKS 188 (352)
Q Consensus 114 ~~l~v~~s-----~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~a 188 (352)
.+++|..+ +++||||||+++|++|++|+||+|+++...+.+++. +.......++.+. . ....+++..||.+
T Consensus 131 ~gfeV~~~~ry~~e~~G~GlfA~~~I~kGe~I~EY~Geii~~~e~ee~~--~~~~~~~dF~i~~-s-~~~~~a~~~g~~a 206 (273)
T 3s8p_A 131 SGFEILPCNRYSSEQNGAKIVATKEWKRNDKIELLVGCIAELSEIEENM--LLRHGENDFSVMY-S-TRKNCAQLWLGPA 206 (273)
T ss_dssp GCEEEEEECCCTTCSSEEEEEESSCBCTTCEEEEEEEEEEEECHHHHHH--HCCTTTSCTTEEE-E-TTTTEEEEEESGG
T ss_pred CCceEEeccceeecCCCceEEECCccCCCCEEEEEEEEEccccHHHHHH--Hhhhcccccceec-c-ccccccceecchH
Confidence 45666664 569999999999999999999999998776665542 2122222222222 1 1224578899999
Q ss_pred ccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC-CceecCCCCCCccccCcC
Q 018661 189 RYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA-DQDCHCGAAGCRRKLGAK 255 (352)
Q Consensus 189 RfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~-~~~C~Cgs~~Crg~l~~~ 255 (352)
|||||||+|||.+. ..+..++.|+|+|||++|||||+||+..+|+. .+.|.||+++|||..+.+
T Consensus 207 rfiNHSC~PN~~~~---~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~~~~f~C~C~~c~crG~g~f~ 271 (273)
T 3s8p_A 207 AFINHDCRPNCKFV---STGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCERRGTGAFK 271 (273)
T ss_dssp GGCEECSSCSEEEE---EEETTEEEEEESSCBCTTCBCEECCCTTTTSGGGTTCCCHHHHHHTCGGGC
T ss_pred HhhCCCCCCCeEEE---EcCCCEEEEEECceeCCCCEEEEecCchhcCCCCeEEECCCCcCCCCCCCc
Confidence 99999999999763 23446899999999999999999999988864 589999999999997754
No 14
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=6.2e-27 Score=222.77 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=99.7
Q ss_pred cccEEEEEecCC--CcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEee--------c
Q 018661 113 VKKMKLVQTEKC--GAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDA--------T 182 (352)
Q Consensus 113 ~~~l~v~~s~~k--G~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa--------~ 182 (352)
...++|.+|+.+ ||||||+++|++|++|+||+|++|+..++.+|...+ ..+.+.++...+||| +
T Consensus 162 ~~~~~v~~S~i~GkG~Gvfa~~~I~~G~~I~ey~Ge~i~~~~~~~r~~~~------~~~~~~l~~~~~iDa~~~~~~~~~ 235 (293)
T 1h3i_A 162 SERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWAL------NGNTLSLDEETVIDVPEPYNHVSK 235 (293)
T ss_dssp HTTEEEEECSSSSSSEEEEESSCBCTTCEEEEECCEEECHHHHHHSCGGG------CTTEEECSSSCEEECCTTTTSTTT
T ss_pred ceeEEEeeeecCCCcceEEECCcCCCCCEEEEeccEEcCHHHHhHHhhhc------ccCEEecCCCEEEeCcccccccce
Confidence 357889988554 599999999999999999999999999988874433 235678899999999 7
Q ss_pred ccCCccccccCCCCCCcceEEEEECCeEE-EEEEEccCCCCCCeEEEcCCCCCC
Q 018661 183 YKGNKSRYINHSCCPNTEMQKWIIDGETR-IGIFATRDIKKGENLTYDYQFVQF 235 (352)
Q Consensus 183 ~~GN~aRfiNHSC~PN~~~~~~~~~g~~~-i~i~A~rdI~~GEELT~dY~~~~~ 235 (352)
..||+||||||||+|||.++.+...+..+ ++|||+|||++||||||||++...
T Consensus 236 ~~gn~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~~ 289 (293)
T 1h3i_A 236 YCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHS 289 (293)
T ss_dssp CCSCCGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTBC
T ss_pred eeccceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCCC
Confidence 79999999999999999998875544345 489999999999999999998764
No 15
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=99.94 E-value=3.7e-27 Score=203.14 Aligned_cols=111 Identities=28% Similarity=0.317 Sum_probs=92.8
Q ss_pred CCcccEEEEEec--CCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeec---c-ceeEeecc-
Q 018661 111 RPVKKMKLVQTE--KCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEIN---R-DMVIDATY- 183 (352)
Q Consensus 111 ~~~~~l~v~~s~--~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~---~-~~~IDa~~- 183 (352)
.....++|.++. ++||||||+++|++|++|++|.|++++..++. .+.|+|.+. . .++|||+.
T Consensus 26 ~lp~~l~l~~S~i~~~G~GVfA~~~I~kG~~~gey~Ge~i~~~e~~-----------~~~Y~f~i~~~~~~~~~IDa~~~ 94 (149)
T 2qpw_A 26 GLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVK-----------NNVYMWEVYYPNLGWMCIDATDP 94 (149)
T ss_dssp TCCTTEEEEECSSCTTSEEEEESSCBCTTCEECCCCCEEECGGGCC-----------CSSSEEEEEETTTEEEEEECSSG
T ss_pred CCCCCeEEEEcCCCCCceEEEECCccCCCCEEEEEeCEEcCHHHhc-----------cCceEEEEecCCCeeEEEeCCCC
Confidence 455689999984 67999999999999999999999999876531 245777763 2 36899997
Q ss_pred -cCCccccccCCCCC---CcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCC
Q 018661 184 -KGNKSRYINHSCCP---NTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFG 236 (352)
Q Consensus 184 -~GN~aRfiNHSC~P---N~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~ 236 (352)
.||++|||||||+| ||... ..+ .+|.|+|+|||++|||||+||+..++.
T Consensus 95 ~~gn~~RfINhSc~p~eqNl~~~--~~~--~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 95 EKGNWLRYVNWACSGEEQNLFPL--EIN--RAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp GGSCGGGGCEECBTTBTCCEEEE--EET--TEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred CCCcceeeeeccCChhhcCEEEE--EEC--CEEEEEEccCCCCCCEEEEccCCccCC
Confidence 99999999999999 98763 233 589999999999999999999988764
No 16
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.7e-25 Score=207.14 Aligned_cols=133 Identities=23% Similarity=0.341 Sum_probs=97.8
Q ss_pred ccEEEEEe-----cCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCcc
Q 018661 114 KKMKLVQT-----EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKS 188 (352)
Q Consensus 114 ~~l~v~~s-----~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~a 188 (352)
..++|..+ .++||||||+++|++|++|.+|+|+++...+.+++.. ...... |.+... ....++..+||++
T Consensus 103 ~g~eV~~~~Ry~~~~~G~Gv~A~~~I~kGE~I~ey~Geli~~t~~e~~~~---~~~~n~-f~i~~~-~~~~~~~l~~~~a 177 (247)
T 3rq4_A 103 SGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELREADEGLL---RAGEND-FSIMYS-TRKRSAQLWLGPA 177 (247)
T ss_dssp GCEEEEECCCCTTCSSCEEEEESSCBCTTCEEEEEEEEEEECCGGGGGGC---CTTTSC-TTEEEE-TTTTEEEEEESGG
T ss_pred CCcEEEeeeeeeecCCcceEEeCCccCCCCEEEEEEeEEEeCcHHHHHhh---hccCCc-EEEEec-CCcccceeecchh
Confidence 34555543 5789999999999999999999999986555444221 111222 222222 2235788899999
Q ss_pred ccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC-CceecCCCCCCccccCc
Q 018661 189 RYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA-DQDCHCGAAGCRRKLGA 254 (352)
Q Consensus 189 RfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~-~~~C~Cgs~~Crg~l~~ 254 (352)
|||||||+|||.+..+ + ..++.|+|+|||++|||||++|+..+|+. .+.|.|+++.+.+..+.
T Consensus 178 r~iNHSC~PN~~~~~~--~-~~~i~v~A~rdI~~GEElt~~Y~~~~~~~~~f~C~C~~C~~~~~g~f 241 (247)
T 3rq4_A 178 AFINHDCKPNCKFVPA--D-GNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKGEGAF 241 (247)
T ss_dssp GGCEECSSCSEEEEEE--T-TTEEEEEESSCBCTTCBCEECCCTTSSSGGGTTCCCHHHHHHTCGGG
T ss_pred hhcCCCCCCCEEEEEe--C-CCEEEEEECCcCCCCCEEEEecCchhcCCCCCEEECCCCCCCCCCcc
Confidence 9999999999976443 3 35899999999999999999999998865 47899997665555443
No 17
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=162.32 Aligned_cols=112 Identities=23% Similarity=0.193 Sum_probs=80.9
Q ss_pred CcccEEEEEe--cCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeecc-----ceeEeecc-
Q 018661 112 PVKKMKLVQT--EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR-----DMVIDATY- 183 (352)
Q Consensus 112 ~~~~l~v~~s--~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~-----~~~IDa~~- 183 (352)
....+.|.+| +++|+||||+++|++|+++++|.|++++.+++... ..+.|++.+.. .++||++.
T Consensus 25 LP~~l~l~~S~i~~~G~GVfA~~~IpkGt~fGpY~Ge~i~~~ea~~~--------~~~~y~w~i~~~~G~~~~~IDa~~e 96 (170)
T 3ep0_A 25 LPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDIC--------KNNNLMWEVFNEDGTVRYFIDASQE 96 (170)
T ss_dssp CCTTEEEEECSSSSCSEEEEESSCBCTTCEEEEECCEEECC------------------CEEEEECTTSSEEEEEECC--
T ss_pred CCCCeEEEEcCCCCCceEEEECcccCCCCEEEecCceecCHHHhccc--------cCCceEEEEecCCCcEEEEEECCCC
Confidence 3457899997 56699999999999999999999999998765431 22346666532 26899997
Q ss_pred -cCCccccccCCCC---CCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCC
Q 018661 184 -KGNKSRYINHSCC---PNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQF 235 (352)
Q Consensus 184 -~GN~aRfiNHSC~---PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~ 235 (352)
.||++|||||||. +|+... ..+ .+|.++|+|||.+||||+++|+..+.
T Consensus 97 ~~~NWmR~Vn~A~~~~eqNl~a~--q~~--~~I~~~a~RdI~pGeELlvwYg~~y~ 148 (170)
T 3ep0_A 97 DHRSWMTYIKCARNEQEQNLEVV--QIG--TSIFYKAIEMIPPDQELLVWYGNSHN 148 (170)
T ss_dssp ----GGGGCEECSSTTTCCEEEE--EET--TEEEEEESSCBCTTCBCEEEECC---
T ss_pred CCcceeeeEEecCCcccCCeeeE--EEC--CEEEEEECcCcCCCCEEEEeeCHHHH
Confidence 7999999999996 787653 233 58999999999999999999998774
No 18
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=99.80 E-value=9.9e-20 Score=157.09 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=79.8
Q ss_pred cccEEEEEe-cCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeec--c--ceeEeecc--cC
Q 018661 113 VKKMKLVQT-EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEIN--R--DMVIDATY--KG 185 (352)
Q Consensus 113 ~~~l~v~~s-~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~--~--~~~IDa~~--~G 185 (352)
...++|..+ +++|+||||++.|++|+.+++|.|++++.+++..+. + ..+.|++.+. . ..+||++. .|
T Consensus 22 P~~l~l~~S~~~~g~GVfa~~~Ip~G~~fGPy~Ge~~~~~e~~~~~----~--~~~~y~w~i~~~~~~~~~iD~~~~~~~ 95 (151)
T 3db5_A 22 PKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWT----D--KAVNHIWKIYHNGVLEFCIITTDENEC 95 (151)
T ss_dssp CTTEEEEECC---CEEEEESSCBCTTCEECCCCCEEEC-----------------CCSEEEEEETTEEEEEEECCCTTTS
T ss_pred CCCeEEEEccCCCceEEEEecccCCCCEEEEeccEEeCHHHhhccc----c--cCCCceEEEEeCCCEEEEEECcCCCCC
Confidence 346888885 678999999999999999999999999988766542 1 1123455432 1 35899997 59
Q ss_pred CccccccCCCCC---CcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCC
Q 018661 186 NKSRYINHSCCP---NTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQF 235 (352)
Q Consensus 186 N~aRfiNHSC~P---N~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~ 235 (352)
|++|||||||++ |+.... .+ .+|.++|+|||++||||+++|+..++
T Consensus 96 NWmR~Vn~A~~~~eqNl~a~q--~~--~~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 96 NWMMFVRKARNREEQNLVAYP--HD--GKIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp CGGGGCEECSSTTTCCEEEEE--ET--TEEEEEESSCBCTTCBCEEEECC---
T ss_pred cceeEEEecCCcccCceEEEE--EC--CEEEEEEccccCCCCEEEEecCHHHH
Confidence 999999999965 886633 33 58999999999999999999998775
No 19
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=156.33 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=92.0
Q ss_pred cccEEEEEe--cCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeecc----ceeEeecc--c
Q 018661 113 VKKMKLVQT--EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR----DMVIDATY--K 184 (352)
Q Consensus 113 ~~~l~v~~s--~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~----~~~IDa~~--~ 184 (352)
...+.|.++ +++|+||||++.|++|+.+++|.|++++.+++.+. ..+.|++.+.. ..+|||+. .
T Consensus 57 P~~L~lr~S~i~~~G~GVfa~~~IpkGt~fGPY~Ge~~~~~e~~~~--------~~~~y~w~i~~~g~~~~~IDas~e~~ 128 (196)
T 3dal_A 57 PRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKN--------ANRKYFWRIYSRGELHHFIDGFNEEK 128 (196)
T ss_dssp CTTEEEEECTTSCCEEEEEESSCBCTTEEECCCCCEEECTTTCC-----------CCTTEEEEEETTEEEEEEECCCTTS
T ss_pred CCCeEEEECCCCCceeEEEEccccCCCCEEEeccceEcCHHHhhhc--------cCCcceeeeccCCCEEEEEECCCCCC
Confidence 357888887 45899999999999999999999999998764221 12345565532 37899987 8
Q ss_pred CCccccccCCCC---CCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCCCceecCCCCCCcc
Q 018661 185 GNKSRYINHSCC---PNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRR 250 (352)
Q Consensus 185 GN~aRfiNHSC~---PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg 250 (352)
||++|||||||. +|+... ..+ .+|.++|+|||++||||+++|+..+ ...+|.+-|+.
T Consensus 129 gNWmRfVn~A~~~~eqNl~a~--q~~--~~I~y~a~RdI~pGeELlvwYg~~Y-----~~~lg~p~~~~ 188 (196)
T 3dal_A 129 SNWMRYVNPAHSPREQNLAAC--QNG--MNIYFYTIKPIPANQELLVWYCRDF-----AERLHYPYPGE 188 (196)
T ss_dssp SCGGGGCEECSSTTTCCEEEE--EET--TEEEEEESSCBCTTCBCEEEECHHH-----HHHTTCCCTTC
T ss_pred CceEEeEEecCCcccCCcEEE--EEC--CEEEEEECcccCCCCEEEEecCHHH-----HHHcCCCCCHH
Confidence 999999999996 688653 333 5899999999999999999999654 34444444433
No 20
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=99.66 E-value=3.6e-17 Score=149.56 Aligned_cols=134 Identities=22% Similarity=0.181 Sum_probs=86.7
Q ss_pred ccEEEEEecCCCcEEEec-cccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeec--c--ceeEeecc--cCC
Q 018661 114 KKMKLVQTEKCGAGIVAD-EDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEIN--R--DMVIDATY--KGN 186 (352)
Q Consensus 114 ~~l~v~~s~~kG~GlfA~-~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~--~--~~~IDa~~--~GN 186 (352)
..++|.++...|.|||+. +.|++|+.+++|.|++++..++. +.|++.+. . ..+||+.. .||
T Consensus 72 ~~L~vr~S~i~~~Gv~~~~~~IpkGt~fGPY~Ge~~s~~ea~------------~~y~wei~~~~g~~~~IDgsde~~gN 139 (237)
T 3ray_A 72 QGMEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQDKSA------------GFFSWLIVDKNNRYKSIDGSDETKAN 139 (237)
T ss_dssp TTEEEEECTTSCEEEEECSSCBCTTEEECCCCSEEECC-----------------CCEEEEECTTSCEEEEECCCTTTSC
T ss_pred CCeEEEEcCCCCcceEEEeCcCCCCCEEEecccEEcChHHcc------------ccceEEEEcCCCcEEEEecCCCCCCc
Confidence 468999999999999987 89999999999999999875431 12444442 2 35899997 799
Q ss_pred ccccccCCCC---CCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCCCceecCCCCCCccccCcCCCCCCCCh
Q 018661 187 KSRYINHSCC---PNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISS 263 (352)
Q Consensus 187 ~aRfiNHSC~---PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg~l~~~~~~~~~~~ 263 (352)
++|||||+|. +|+... ..+ .+|.++|+|+|.+||||+++|+..++ ....+.|++.-|++...+.+......+
T Consensus 140 WmRfVn~Ar~~~EqNL~A~--q~~--~~Iyy~a~RdI~pGeELlVwYg~~Y~-~~l~~~~~~~~~~~~~~~~k~~~~~~~ 214 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAF--QHS--ERIYFRACRDIRPGEWLRVWYSEDYM-KRLHSMSQETIHRNLARGEKRLQREKS 214 (237)
T ss_dssp GGGGCEECCCTTTCCEEEE--EET--TEEEEEESSCBCTTCBCEEEECHHHH-HHHCC----------------------
T ss_pred ceeEEEcCCCcccccceeE--EeC--CEEEEEEccccCCCCEEEEeeCHHHH-HHhcccccchhcccccchhhcccccCc
Confidence 9999999996 577553 333 58999999999999999999997764 345688999999998877654444433
Q ss_pred H
Q 018661 264 D 264 (352)
Q Consensus 264 ~ 264 (352)
+
T Consensus 215 ~ 215 (237)
T 3ray_A 215 E 215 (237)
T ss_dssp -
T ss_pred c
Confidence 3
No 21
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=130.54 Aligned_cols=102 Identities=8% Similarity=0.089 Sum_probs=77.2
Q ss_pred cEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeee------------ccceeEeec
Q 018661 115 KMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEI------------NRDMVIDAT 182 (352)
Q Consensus 115 ~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l------------~~~~~IDa~ 182 (352)
.++|. ..|+||||++.|++|+.+++|.|++++.+++.. +.|.+.+ +...+||++
T Consensus 24 ~L~i~---~~g~GVfA~~~IpkGt~fGPy~Ge~~~~~e~~~-----------~~~~~~v~~~d~~~~~~~~~~~~~iD~~ 89 (152)
T 3ihx_A 24 VLYID---RFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKD-----------CYIHLKVSLDKGDRKERDLHEDLWFELS 89 (152)
T ss_dssp TEEEC---TTTCSEEESSCBCSSCEECCCCSCEECSTTCCS-----------SSCCCBC---------------CEECCC
T ss_pred ceEEe---ecCCeEEECceecCCCEEEeeccEEcCHHHhcc-----------CcceEEEEccccccccccCCccEEEEcc
Confidence 44543 358999999999999999999999998865311 1121111 135789998
Q ss_pred c--cCCccccccCCCC---CCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCC
Q 018661 183 Y--KGNKSRYINHSCC---PNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQ 234 (352)
Q Consensus 183 ~--~GN~aRfiNHSC~---PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~ 234 (352)
. .||++|||||+|. +|+... .. ..++.+.|+|+|.+||||+++|+..+
T Consensus 90 ~~~~~NWmr~vn~a~~~~eqNl~a~--q~--~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 90 DETLCNWMMFVRPAQNHLEQNLVAY--QY--GHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp CTTTSCGGGGCCBCCSTTTCCEEEE--EC--SSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred CCCCCcceeeeeccCCccCCCcEEE--Ee--CCeEEEEEeeecCCCCEEEEechHHH
Confidence 6 5999999999998 677652 22 35788999999999999999998654
No 22
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.22 E-value=3.6e-11 Score=121.79 Aligned_cols=48 Identities=31% Similarity=0.424 Sum_probs=38.5
Q ss_pred ccccccCCCCCCcceEEEEECCe-----------EEEEEEEccCCCCCCeEEEcCCCCCCC
Q 018661 187 KSRYINHSCCPNTEMQKWIIDGE-----------TRIGIFATRDIKKGENLTYDYQFVQFG 236 (352)
Q Consensus 187 ~aRfiNHSC~PN~~~~~~~~~g~-----------~~i~i~A~rdI~~GEELT~dY~~~~~~ 236 (352)
.+.||||||.|||.+.. .++. .++.|+|+|||++|||||++|....+.
T Consensus 200 ~~s~~NHSC~PN~~~~~--~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~ 258 (490)
T 3n71_A 200 NLGLVNHDCWPNCTVIF--NNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258 (490)
T ss_dssp TGGGCEECSSCSEEEEE--ECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSC
T ss_pred hhhhcccCCCCCeeEEe--cCCccccccccccccceEEEEECCCCCCCCEEEEeecCCCCC
Confidence 35689999999998643 3321 289999999999999999999876553
No 23
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.87 E-value=1.1e-09 Score=109.06 Aligned_cols=47 Identities=32% Similarity=0.400 Sum_probs=39.0
Q ss_pred CccccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCC
Q 018661 186 NKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFG 236 (352)
Q Consensus 186 N~aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~ 236 (352)
..++|+||||.||+.+.. .+ .++.|+|+|||++|||||++|....+.
T Consensus 200 ~~~s~~NHsC~PN~~~~~--~~--~~~~~~a~r~I~~GeEl~isY~~~~~~ 246 (429)
T 3qwp_A 200 PSISLLNHSCDPNCSIVF--NG--PHLLLRAVRDIEVGEELTICYLDMLMT 246 (429)
T ss_dssp TTGGGCEECSSCSEEEEE--ET--TEEEEEECSCBCTTCEEEECCSCSSCC
T ss_pred hhhHhhCcCCCCCeEEEE--eC--CEEEEEEeeeECCCCEEEEEecCCCCC
Confidence 457899999999997743 33 478899999999999999999876554
No 24
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.78 E-value=4.1e-09 Score=105.07 Aligned_cols=54 Identities=26% Similarity=0.511 Sum_probs=42.9
Q ss_pred ccccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCC-----------CceecCC
Q 018661 187 KSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA-----------DQDCHCG 244 (352)
Q Consensus 187 ~aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~-----------~~~C~Cg 244 (352)
.+.|+||||.||+.+. +.+ .++.|+|+|||++|||||++|....+.. .|.|.|.
T Consensus 201 ~~s~~NHsC~PN~~~~--~~~--~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~ 265 (433)
T 3qww_A 201 DVALMNHSCCPNVIVT--YKG--TLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECR 265 (433)
T ss_dssp TGGGSEECSSCSEEEE--EET--TEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSH
T ss_pred cccccCCCCCCCceEE--EcC--CEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECC
Confidence 4568999999999763 333 3688999999999999999999765431 3788885
No 25
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.78 E-value=5.6e-05 Score=54.44 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=40.5
Q ss_pred cccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEe
Q 018661 298 CCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFID 341 (352)
Q Consensus 298 ~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~ 341 (352)
-.||..|.--||.|..|| +.|.++|+.+...+|+|-||.+|.|-
T Consensus 10 ~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 10 YADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp SCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 468899999999999999 99999999999999999999988764
No 26
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.70 E-value=8e-05 Score=53.79 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=40.9
Q ss_pred ccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEe
Q 018661 297 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFID 341 (352)
Q Consensus 297 ~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~ 341 (352)
...||..|.--||.|..|| +.|.++|+.+...+|+|-||.+|.|-
T Consensus 12 ~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 12 KFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp SSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred EeecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 3468999999999999999 99999999999999999999988764
No 27
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.63 E-value=0.00012 Score=56.01 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=41.2
Q ss_pred CCCCcCCCcccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 288 PYNQRQICPQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 288 ~~~q~k~~~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
++........-.||.++..-| .|..|| |+|.+.+.. ++.+|+|+||.+|.|...
T Consensus 12 ~~~~~~~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 12 NLYFQGGSSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp ---------CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccCcccCCcccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 333333455668999999999 999999 999999998 689999999999988754
No 28
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00018 Score=52.83 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=40.4
Q ss_pred ccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 297 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 297 ~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
.--||.++..-| .|..|| |+|.+.+.. +..+|.|+||.+|.|.+..
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~~ 52 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHIH 52 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGGG
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHHH
Confidence 346888999999 999999 999999998 6799999999999987653
No 29
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.45 E-value=0.00017 Score=58.38 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=38.8
Q ss_pred cccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEe
Q 018661 296 PQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFID 341 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~ 341 (352)
+.++||.|+-.-|+.|..|| |+|.+ |....|.+|+||||++-.+.
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEEE
T ss_pred CccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCeeEee
Confidence 56789999999999888899 99988 58899999999999987663
No 30
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.34 E-value=0.00054 Score=48.91 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=41.2
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
+|..+..-|..|..|| ++|.+.++..++.+|.|.| |.+|.+.++.
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH
Confidence 6888899999999999 9999999988999999988 9999998864
No 31
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=97.19 E-value=0.00093 Score=48.53 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=41.7
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
-+|..+..-|..|..|| ++|.+.++.++..+|.|.| |.+|.+.+++
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHH
Confidence 47889999999999999 9999999988999999976 9999998764
No 32
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.16 E-value=0.0011 Score=46.30 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=38.8
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
+|..+..-|+.|..|| ++|.+.++..++..|.|.| |.+|.+.++.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 6888889999999999 9999999888999999966 9999998864
No 33
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.00087 Score=50.22 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=38.4
Q ss_pred cccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 298 CCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 298 ~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
--||..+..-|. |..|| |+|.+.+.. ++.+|.|+|+.+|.|...
T Consensus 10 ~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~ 54 (74)
T 2equ_A 10 FKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM 54 (74)
T ss_dssp CCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG
T ss_pred CCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH
Confidence 357999999999 99999 999999876 789999999999988543
No 34
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=97.08 E-value=0.00037 Score=69.53 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=34.2
Q ss_pred cccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCC
Q 018661 188 SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (352)
Q Consensus 188 aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~ 232 (352)
+-++||||.||+.+. .++ ..+.++|.|+|++||||+++||.
T Consensus 223 ~D~~NH~~~~~~~~~---~~~-~~~~~~a~~~i~~Geei~~~YG~ 263 (449)
T 3qxy_A 223 ADILNHLANHNANLE---YSA-NCLRMVATQPIPKGHEIFNTYGQ 263 (449)
T ss_dssp GGGCEECSSCSEEEE---ECS-SEEEEEESSCBCTTCEEEECCSS
T ss_pred HHHhcCCCCCCeEEE---EeC-CeEEEEECCCcCCCchhhccCCC
Confidence 458999999999653 232 36889999999999999999996
No 35
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=97.06 E-value=0.00097 Score=56.25 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=40.7
Q ss_pred cccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 296 PQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
+...||.|+-.-|..++.|| |+|+.+ ....+.+|+||||.+-.|..+
T Consensus 7 ~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 7 GNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp -CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeecc
Confidence 45589999999999999999 999995 778889999999999887643
No 36
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.92 E-value=0.0023 Score=49.56 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=41.5
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
-||..+..-|..|..|| ++|.+.++..++.+|.|.| |.+|.|.+..
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 47999999999999999 9999999988999999966 9999998764
No 37
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=96.89 E-value=0.00052 Score=67.98 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=34.7
Q ss_pred cccccCCCCCCcceEEEEECC-------eEEEEEEEccCCCCCCeEEEcCCCC
Q 018661 188 SRYINHSCCPNTEMQKWIIDG-------ETRIGIFATRDIKKGENLTYDYQFV 233 (352)
Q Consensus 188 aRfiNHSC~PN~~~~~~~~~g-------~~~i~i~A~rdI~~GEELT~dY~~~ 233 (352)
+=++|||+.||.....|.+++ ...+.+.|.|+|++||||+++||..
T Consensus 190 ~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~ 242 (440)
T 2h21_A 190 ADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 242 (440)
T ss_dssp TTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTT
T ss_pred hHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCC
Confidence 457999999986433344332 4578899999999999999999964
No 38
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.62 E-value=0.0058 Score=46.00 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=41.0
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
-+|..+-.-|..|..|| ++|.+.++..+..+|.|.| |.+|.+.++.
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~ 66 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 66 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHH
Confidence 37888999999999999 9999999988999999966 9999998754
No 39
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.59 E-value=0.0052 Score=46.34 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~~ 344 (352)
-+|..+-.-|..|..|| ++|.+.+...++.+|.|.| |.+|.+.++.
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~ 58 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSN 58 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHH
Confidence 47888999999999999 9999999888999999977 9999998753
No 40
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.52 E-value=0.0073 Score=43.80 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=40.8
Q ss_pred ccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 297 QCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 297 ~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
.--+|.-|+.-| .|-.|| |+|++=|..+++-.|.|+||..-++..+
T Consensus 13 ~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 13 KFEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CSCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 446899999999 788888 9999999999999999999998887654
No 41
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.51 E-value=0.00043 Score=52.71 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=37.0
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
-+|.++-.-|. |..|| ++|.+.+.. ++.+|+|+||.+|.|.+.
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 36888888899 99999 999999864 589999999999988765
No 42
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=64.04 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=32.6
Q ss_pred cccccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCC
Q 018661 188 SRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFV 233 (352)
Q Consensus 188 aRfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~ 233 (352)
+-++||||.||.. .+.. ....+.++|.|+|++||||+++||..
T Consensus 273 ~Dm~NH~~~~~~~--~~~~-~~~~~~~~a~~~i~~Geei~isYG~~ 315 (497)
T 3smt_A 273 WDMCNHTNGLITT--GYNL-EDDRCECVALQDFRAGEQIYIFYGTR 315 (497)
T ss_dssp GGGCEECSCSEEE--EEET-TTTEEEEEESSCBCTTCEEEECCCSC
T ss_pred HHhhcCCCcccce--eeec-cCCeEEEEeCCccCCCCEEEEeCCCC
Confidence 4479999999642 1222 23467889999999999999999863
No 43
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=96.21 E-value=0.016 Score=40.80 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=37.8
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
+|.-|=+-|. |.+|| |+|...|.....-.|.|+||.+-++.+++
T Consensus 6 ~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kd 50 (58)
T 4hcz_A 6 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKD 50 (58)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGG
T ss_pred cCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHH
Confidence 5777888898 46667 99999999999999999999998887653
No 44
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=94.27 E-value=0.09 Score=39.00 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=39.9
Q ss_pred cccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 296 PQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
..--+|.-|=+-|- |..|| |+|+.-|....+-.|.|+||..-+...++
T Consensus 25 ~~f~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kd 73 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKD 73 (79)
T ss_dssp CCCCTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ceeccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeec
Confidence 34557888888898 56666 99999999999999999999988876653
No 45
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=93.61 E-value=0.16 Score=39.02 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=38.5
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
-+|..+-+.|+.|..|| |.|.+.++ +++-.|.| |=|.+|.+.+++
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~ 75 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKD 75 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHH
Confidence 48999999999999999 99999975 46778888 779999998764
No 46
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.58 E-value=0.23 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=37.7
Q ss_pred cccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEecc
Q 018661 298 CCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 298 ~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~ 343 (352)
--+|.-|=+-|. |-.|| |+|+.-|.....-.|.|+|+..-++..+
T Consensus 10 f~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 10 LWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CCTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 346777888888 56777 9999999999999999999998877654
No 47
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.49 E-value=0.13 Score=39.22 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=41.8
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
=+|..+.+-.+.|..|| |.|.+=+..++-|.++||=|.+|.++...
T Consensus 23 k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~ 69 (85)
T 2eqk_A 23 ENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC 69 (85)
T ss_dssp CSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT
T ss_pred cCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc
Confidence 47889999999999999 99999999999999999999999998653
No 48
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.08 E-value=0.21 Score=35.51 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=37.6
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
-+|.-|=+-|. |-.|| |+|+.-|....+-.|.|+|+..-++..++
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kd 54 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKD 54 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEeec
Confidence 36777888888 66667 99999999999999999999988876553
No 49
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=92.22 E-value=0.71 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=35.9
Q ss_pred cccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccc
Q 018661 296 PQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~ 344 (352)
..--+|..|=+-|-+ ..|| |+|. |..+++--|.|+|..+-++.+++
T Consensus 14 ~~~~~geDVL~rw~D-G~fYLGtIV--d~~~~~ClV~FeD~S~~Wv~~kd 60 (69)
T 2xk0_A 14 VTYALQEDVFIKCND-GRFYLGTII--DQTSDQYLIRFDDQSEQWCEPDK 60 (69)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEE--EECSSCEEEEETTCCEEEECTTT
T ss_pred cccccCCeEEEEecC-CCEEEEEEE--ecCCceEEEEecCCcceeeeHHH
Confidence 344578888888985 6666 9994 56788999999999988887664
No 50
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.38 E-value=0.22 Score=39.46 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=38.1
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
-+|..+-+.|+.|..|| ++|.+.++. ++-+|.| |=|.+|.+.++.
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHH
Confidence 47888999999999999 999999874 5677888 779999998764
No 51
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=89.65 E-value=0.65 Score=40.70 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=37.0
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
+|..+-+-|+.|..|| |+|.+.+. ..-+|.| |.|.+|.+.++.
T Consensus 54 ~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~ 98 (218)
T 2wac_A 54 RGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNR 98 (218)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGG
T ss_pred cCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHH
Confidence 8899999999999999 99999987 7788998 559999987643
No 52
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.69 E-value=0.31 Score=47.94 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.9
Q ss_pred cccEEEEEecCCCcEEEeccccCCCceEEEEeee
Q 018661 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGE 146 (352)
Q Consensus 113 ~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Ge 146 (352)
...|+++.++++|+||+|+++|++|++|..-...
T Consensus 6 ~~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~ 39 (433)
T 3qww_A 6 RGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAY 39 (433)
T ss_dssp STTEEEEECTTSCEEEEESSCBCTTCEEEEEECS
T ss_pred CCcEEEeecCCCcCeEEECCCCCCCCEEEecCCc
Confidence 4689999999999999999999999999766443
No 53
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=85.44 E-value=1.2 Score=36.30 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.2
Q ss_pred ccccEEEEEeCCCceeeEEEEeeeCCCCeEEEEeecCceeEEeccccceEe
Q 018661 299 CIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWEL 349 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h~v~y~dg~~e~~~l~~e~~~~ 349 (352)
..|..|+|-|+..+.|=|+..+... +.+.+|.||||. .+.|++++.-.
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~~-~~~YtV~FeDgs--~~~~kR~~iyt 113 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNI-AHMYQVEFEDGS--QIAMKREDIYT 113 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEE-EEEEEEECTTSC--EEEEEGGGCCC
T ss_pred CCCCEEEEEcCCCCEEeEEEeeeee-EEEEEEEECCCC--eEEecHHHccc
Confidence 4689999999988874476655443 457789999996 66777776543
No 54
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.32 E-value=0.75 Score=45.05 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=29.6
Q ss_pred cccEEEEEecCCCcEEEeccccCCCceEEEEeeeE
Q 018661 113 VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEV 147 (352)
Q Consensus 113 ~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gev 147 (352)
...++.+.++++|+||+|+++|++|++|..-...+
T Consensus 4 ~~~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~ 38 (429)
T 3qwp_A 4 PLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLA 38 (429)
T ss_dssp CCSEEEEECSSSSEEEEESSCBCTTCEEEEECCSE
T ss_pred ccceeecccCCCCCeEEeCCCCCCCCEEEecCCce
Confidence 35688888999999999999999999998755443
No 55
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=84.72 E-value=2 Score=34.63 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=36.3
Q ss_pred ccccEEEEEeCCCceeeEEEEeeeCCCCeEEEEeecCceeEEeccccceEecc
Q 018661 299 CIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVT 351 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h~v~y~dg~~e~~~l~~e~~~~~~ 351 (352)
..|..|+|-|+..+.|=|+..+... +.+.+|.|+||. .+.|++++.-.++
T Consensus 65 ~~G~~V~V~W~DG~~y~a~f~g~~~-~~~Y~V~feDgs--~~~~kR~~iyt~~ 114 (118)
T 2qqr_A 65 AEGEVVQVRWTDGQVYGAKFVASHP-IQMYQVEFEDGS--QLVVKRDDVYTLD 114 (118)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEE-EEEEEEEETTSC--EEEECGGGEEETT
T ss_pred CCCCEEEEEcCCCCEeeeEEeceeE-EEEEEEEECCCC--EEEEcHHHeeccc
Confidence 4689999999988764365554332 457889999998 4778888765543
No 56
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=82.92 E-value=2.5 Score=37.56 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.2
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
+|..+-+.++.|..|| |.|.+..+. ++-+|.| |=|.+|.+.+++
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~~ 113 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTDQ 113 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHHH
Confidence 6888889999999999 999998764 5678888 889999987654
No 57
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=82.37 E-value=2.3 Score=36.11 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=34.9
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEE
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFI 340 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~ 340 (352)
-+|..+-+.|+.|..|| |+|.+.++.. +-.|.| |=|.+|.+
T Consensus 49 ~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v 91 (169)
T 3ntk_A 49 KEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT 91 (169)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh
Confidence 47888989999999999 9999998855 788888 66888874
No 58
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=81.68 E-value=2.2 Score=38.17 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.9
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeec-CceeEEecc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFED-GESEFIDMA 343 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~d-g~~e~~~l~ 343 (352)
+|..+-+.|. |..|| |.|.+.++. .+-.|.|-| |.+|.+.++
T Consensus 68 ~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 111 (246)
T 2hqx_A 68 RGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 111 (246)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHH
Confidence 7888889888 99999 999999764 477888855 999999654
No 59
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=76.91 E-value=4.7 Score=35.01 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=36.7
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
+|..+-+.++.|..|| |.|.+..+. ++-+|.| |=|.+|.+.+++
T Consensus 68 ~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~~ 113 (201)
T 4b9w_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTDQ 113 (201)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHHH
Confidence 6888889999999999 999998764 4577888 889999987653
No 60
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=74.71 E-value=2.9 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=28.2
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCCeE
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH 328 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h 328 (352)
...++||+.|+|-=-..+.|.|+|.+|||.+-.=
T Consensus 11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sI 44 (86)
T 1y96_A 11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANI 44 (86)
T ss_dssp HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCE
T ss_pred HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEE
Confidence 4568999999999987777669999999877543
No 61
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=74.56 E-value=5.4 Score=35.37 Aligned_cols=47 Identities=13% Similarity=0.321 Sum_probs=36.2
Q ss_pred cccccEEEEEeCCC--ceee-EEEEeeeCCC--CeEEEEeecCceeEEeccc
Q 018661 298 CCIGKVIRISHPKN--ESSF-GIIRRFDEYS--RKHSVLFEDGESEFIDMAK 344 (352)
Q Consensus 298 ~~~g~~i~~~~~~~--~~~~-g~v~~~~~~~--~~h~v~y~dg~~e~~~l~~ 344 (352)
=.||.||-..|... ..|| |+|.-=+... -++-|.||||....+.+.+
T Consensus 69 l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~ 120 (213)
T 3dlm_A 69 LYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSE 120 (213)
T ss_dssp CCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGG
T ss_pred EeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCce
Confidence 36899999999754 2688 9887655432 3788999999999888764
No 62
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=73.65 E-value=2.3 Score=42.52 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=28.0
Q ss_pred cEEEEEecCCCcEEEeccccCCCceEEEEeee
Q 018661 115 KMKLVQTEKCGAGIVADEDIKRGEFVIEYVGE 146 (352)
Q Consensus 115 ~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Ge 146 (352)
.+++...++.|+||+|+++|++|+.|+...-.
T Consensus 94 ~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP~~ 125 (497)
T 3smt_A 94 GFEMVNFKEEGFGLRATRDIKAEELFLWVPRK 125 (497)
T ss_dssp TEEEEEETTTEEEEEESSCBCTTCEEEEEEGG
T ss_pred ceEEEEcCCCccEEEEcccCCCCCEEEEcCHH
Confidence 57888889999999999999999999876544
No 63
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=70.82 E-value=5.6 Score=29.04 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=26.3
Q ss_pred cccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
...++|++|.|+-..++.|.|++++||..-.
T Consensus 9 L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mN 39 (77)
T 1i4k_A 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMN 39 (77)
T ss_dssp HHTTTTSEEEEEETTSCEEEEEEEEECTTCC
T ss_pred HHHhCCCEEEEEEcCCCEEEEEEEEEcCCCC
Confidence 4568899999999877776699999998876
No 64
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=69.79 E-value=4.6 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCcccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 294 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 294 ~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
.....++|++|.|+-..++.|.|++++||..-..
T Consensus 18 ~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNl 51 (83)
T 1mgq_A 18 DALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNL 51 (83)
T ss_dssp HHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCE
T ss_pred HHHHHhCCCEEEEEEcCCcEEEEEEEEECCCcee
Confidence 3567789999999988776655999999998773
No 65
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=68.50 E-value=4.7 Score=30.92 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=26.9
Q ss_pred CCCcccccccEEEEEeCCC-ceeeEEEEeeeCCCCe
Q 018661 293 QICPQCCIGKVIRISHPKN-ESSFGIIRRFDEYSRK 327 (352)
Q Consensus 293 k~~~~~~~g~~i~~~~~~~-~~~~g~v~~~~~~~~~ 327 (352)
......++|++|.||--.+ +.|-|++++||..-..
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNl 58 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNL 58 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEE
Confidence 3456778999999999877 5544999999998773
No 66
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=65.08 E-value=5.5 Score=32.06 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=30.6
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeE
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEF 339 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~ 339 (352)
-||.+|..-|+ +..|| |.|.+= ...--+.|.|+||--=.
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~-~~~~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRL-TTETFYEVNFDDGSFSD 46 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEE-EEEEEEEEEETTSCEEE
T ss_pred ccCCEEEEECC-CCCEEeEEEEEE-eeEEEEEEEcCCCCccC
Confidence 58999999999 67778 999885 33467889999996543
No 67
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=64.69 E-value=5.7 Score=28.95 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.6
Q ss_pred cccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
...++|++|.|+--.++.|.|++.+||..-.
T Consensus 9 L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mN 39 (75)
T 4emk_B 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMN 39 (75)
T ss_dssp HHHTTTSEEEEECTTSCEEEEEEEEECTTCE
T ss_pred HHHhCCCeEEEEEcCCcEEEEEEEEEcCcce
Confidence 3568999999998877665599999999765
No 68
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=62.56 E-value=4.7 Score=39.63 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.5
Q ss_pred cEEEEEe-cCCCcEEEeccccCCCceEEEEeeeE
Q 018661 115 KMKLVQT-EKCGAGIVADEDIKRGEFVIEYVGEV 147 (352)
Q Consensus 115 ~l~v~~s-~~kG~GlfA~~~I~~G~~I~ey~Gev 147 (352)
+++|... +..|+||+|+++|++|+.|+...-.+
T Consensus 39 ~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~IP~~~ 72 (449)
T 3qxy_A 39 KVAVSRQGTVAGYGMVARESVQAGELLFVVPRAA 72 (449)
T ss_dssp TEEEESSSCSSSSEEEESSCBCTTCEEEEEEGGG
T ss_pred ceEEEecCCCceEEEEECCCCCCCCEEEEeCcHH
Confidence 5677654 47899999999999999998775543
No 69
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=62.55 E-value=9.4 Score=27.66 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=26.3
Q ss_pred cccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
...++|++|.|.-..++.|-|++++||..-..
T Consensus 9 L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNl 40 (75)
T 1h64_1 9 IHRSLDKDVLVILKKGFEFRGRLIGYDIHLNV 40 (75)
T ss_dssp HHTTTTSEEEEEETTSEEEEEEEEEECTTCCE
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEEEeCCCCe
Confidence 35689999999988776655999999998773
No 70
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=61.78 E-value=8.2 Score=29.03 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.8
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCCeE---EEEeecC
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH---SVLFEDG 335 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h---~v~y~dg 335 (352)
....++|++|.|+--.++.|.|++.+||..-..+ .+-+.||
T Consensus 10 ~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g 53 (86)
T 3s6n_F 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDG 53 (86)
T ss_dssp HHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCC
Confidence 3457899999999988777669999999987643 3334455
No 71
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=61.02 E-value=17 Score=29.51 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=33.6
Q ss_pred ccccccEEEEEeCCCc----eee-EEEEeeeCCCCeEEEEeecCc---eeEEecc
Q 018661 297 QCCIGKVIRISHPKNE----SSF-GIIRRFDEYSRKHSVLFEDGE---SEFIDMA 343 (352)
Q Consensus 297 ~~~~g~~i~~~~~~~~----~~~-g~v~~~~~~~~~h~v~y~dg~---~e~~~l~ 343 (352)
+-.+|..|.||+..+. .|| |+|+.... ..+.|-|++=+ .|++.+.
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~EiV~~~ 112 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYNEIVTLE 112 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----CEEECGG
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcceEEehh
Confidence 3478999999999877 799 99998874 68999987733 5666643
No 72
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=60.94 E-value=11 Score=38.06 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=36.8
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEe-ecCceeEEeccc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLF-EDGESEFIDMAK 344 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y-~dg~~e~~~l~~ 344 (352)
+|..+-+.|. |..|| +.|.+.++ .++-.|.| |=|.+|.+.++.
T Consensus 414 ~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~ 458 (570)
T 3bdl_A 414 RGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTR 458 (570)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGG
T ss_pred cCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHH
Confidence 8889999998 99999 99999987 56788888 669999987653
No 73
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=60.94 E-value=7.6 Score=28.71 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.2
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
....++|++|.|+-..++.|.|++++||..-.
T Consensus 15 ~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN 46 (81)
T 1i8f_A 15 TLQDSIGKQVLVKLRDSHEIRGILRSFDQHVN 46 (81)
T ss_dssp HHHTTTTSEEEEEEGGGEEEEEEEEEECTTCC
T ss_pred HHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCe
Confidence 34678899999998866665599999998876
No 74
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=59.05 E-value=9.3 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCcccccccEEEEEeCCCceeeEEEEeeeCCCCeE
Q 018661 294 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH 328 (352)
Q Consensus 294 ~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h 328 (352)
.....++|++|.|+--.+..|-|++.+||..-...
T Consensus 19 ~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlv 53 (105)
T 4emh_A 19 TLLNATQGRPILVELKNGETFNGHLENCDNYMNLT 53 (105)
T ss_dssp -------CCEEEEEETTSCEEEEEEEEECTTCCEE
T ss_pred HHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEE
Confidence 45678999999999998877669999999988643
No 75
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=58.09 E-value=8.3 Score=29.58 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=27.6
Q ss_pred CCcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 294 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 294 ~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
.....++|++|+|.-..++.|.|++++||+.-.
T Consensus 13 ~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mN 45 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRGARTLVGTLQAFDSHCN 45 (96)
T ss_dssp HHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCC
T ss_pred HHHHHHCCCeEEEEECCCcEEEEEEEEECCCCc
Confidence 345679999999999877776699999998875
No 76
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=57.59 E-value=15 Score=27.54 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=28.2
Q ss_pred CCCcccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 293 QICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 293 k~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
......++|++|+|.--.++.|.|++++||..-..
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNl 40 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNL 40 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCE
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeE
Confidence 34567899999999998777666999999988763
No 77
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=56.47 E-value=10 Score=28.94 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=25.9
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
....++|++|+|.--.++.|.|++++||..-.
T Consensus 13 lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mN 44 (93)
T 4emg_A 13 LVRLSLDEIVYVKLRGDRELNGRLHAYDEHLN 44 (93)
T ss_dssp HHHTTTTSEEEEEETTTEEEEEEEEEECTTCC
T ss_pred HHHHhCCCEEEEEECCCcEEEEEEEEECCccc
Confidence 44667999999998766665599999998865
No 78
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=54.47 E-value=32 Score=28.66 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=31.2
Q ss_pred cccEEEEEeCCCce-ee-EEEEeee----CCCCeEEEEeecCceeEEec
Q 018661 300 IGKVIRISHPKNES-SF-GIIRRFD----EYSRKHSVLFEDGESEFIDM 342 (352)
Q Consensus 300 ~g~~i~~~~~~~~~-~~-g~v~~~~----~~~~~h~v~y~dg~~e~~~l 342 (352)
+--||=.+|+.-++ || ++...=. -.+++..|.|||+.+-.+|+
T Consensus 8 ~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V~~ 56 (153)
T 2fhd_A 8 FKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTVNS 56 (153)
T ss_dssp GGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEEET
T ss_pred ccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCccCh
Confidence 35678889996555 67 7665555 47889999999996656444
No 79
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=54.38 E-value=12 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=26.1
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
....++|++|.|.-..++.|-|++++||..-.
T Consensus 13 ~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN 44 (81)
T 1th7_A 13 VLAESLNNLVLVKLKGNKEVRGMLRSYDQHMN 44 (81)
T ss_dssp HHHHHTTSEEEEEETTTEEEEEEEEEECTTCC
T ss_pred HHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCC
Confidence 34568999999998876665599999999877
No 80
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=53.80 E-value=16 Score=29.19 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=27.1
Q ss_pred cccccccEEEEEeCCCceeeEEEEeeeCCCCeE
Q 018661 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH 328 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h 328 (352)
..+++|++|.||--.+..|.|++.+||..-..+
T Consensus 7 L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlv 39 (119)
T 1b34_A 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTH 39 (119)
T ss_dssp HHTCTTCEEEEEETTCCEEEEEEEEECTTCCEE
T ss_pred HHHhCCCEEEEEEcCCCEEEEEEEEEcccceEE
Confidence 457899999999987766559999999987643
No 81
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=53.60 E-value=17 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCcccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 294 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 294 ~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
....+++|++|.|--..++.|.|++.+||..-..
T Consensus 7 ~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNl 40 (76)
T 3s6n_G 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNL 40 (76)
T ss_dssp -------CCEEEEEETTTEEEEEEEEEECTTCCE
T ss_pred HHHHHhCCCeEEEEECCCcEEEEEEEEECCcceE
Confidence 4567899999999998777766999999988763
No 82
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=52.53 E-value=17 Score=26.38 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=26.4
Q ss_pred CcccccccEEEEEeCCC-ceeeEEEEeeeCCCCe
Q 018661 295 CPQCCIGKVIRISHPKN-ESSFGIIRRFDEYSRK 327 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~-~~~~g~v~~~~~~~~~ 327 (352)
....++|++|+|.--.+ +.|-|++++||+.-..
T Consensus 9 ~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNl 42 (77)
T 1ljo_A 9 MVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNL 42 (77)
T ss_dssp HHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCE
T ss_pred HHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceE
Confidence 34568999999999877 5545999999998763
No 83
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=49.87 E-value=4.9 Score=32.59 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=30.7
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeE
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEF 339 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~ 339 (352)
-||.+|..-|+ +..|| |.|.+=.. .--+.|.|+||-.=.
T Consensus 8 ~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s~ 47 (123)
T 2xdp_A 8 SVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSFSR 47 (123)
T ss_dssp CTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCEEE
T ss_pred ccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCccC
Confidence 47888888888 57788 99988774 667899999997543
No 84
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.09 E-value=6.3 Score=29.26 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.2
Q ss_pred EEEEccCCCCCCeEEEc
Q 018661 213 GIFATRDIKKGENLTYD 229 (352)
Q Consensus 213 ~i~A~rdI~~GEELT~d 229 (352)
.++|.|||++||-||-+
T Consensus 8 slvA~rdI~~Gevit~~ 24 (79)
T 1wvo_A 8 SVVAKVKIPEGTILTMD 24 (79)
T ss_dssp EEEESSCBCTTCBCCGG
T ss_pred EEEEeCccCCCCCcCHH
Confidence 58999999999999865
No 85
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=48.45 E-value=14 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=27.3
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
....++|++|.|.--.++.|-|++++||..-..
T Consensus 24 lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNl 56 (94)
T 4emk_A 24 LIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNI 56 (94)
T ss_dssp HHHHTTTSEEEEEESSSEEEEEEEEEECTTCCE
T ss_pred HHHHHcCCeEEEEECCCcEEEEEEEEEcccCCe
Confidence 556789999999998777666999999998753
No 86
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=46.63 E-value=14 Score=25.22 Aligned_cols=40 Identities=35% Similarity=0.834 Sum_probs=28.1
Q ss_pred CCcccccCCCCCC--CCC-CCCCCccceeeeCCCCCCCCCCCCCc
Q 018661 65 GIFCSCTASPGSS--GVC-DRDCHCGMLLSSCSSGCKCGNSCLNK 106 (352)
Q Consensus 65 ~~~C~C~~~~~~~--~~C-~~~C~c~~~~~eC~~~C~C~~~C~Nr 106 (352)
...|.|......+ ..| +..|+|..-...|. .|.|. .|.|.
T Consensus 4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~-GCkNP 46 (52)
T 2lua_A 4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCV-GCKNP 46 (52)
T ss_dssp CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCS-SCCCS
T ss_pred CcccccCcccCCCCceeEcCCccceecCCCccC-CCEec-CcCCC
Confidence 3458886643322 246 77899998888997 58886 59885
No 87
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=46.30 E-value=22 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=32.7
Q ss_pred EEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEEeccccce
Q 018661 304 IRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFIDMAKVDW 347 (352)
Q Consensus 304 i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~~l~~e~~ 347 (352)
|.|--+..+.|. |. .+|..-.+=++.|+||..+.+.|..+..
T Consensus 9 iei~~~P~k~Y~vGE--~LDltGl~v~~~YsDgt~~~~~lt~~~v 51 (98)
T 2l7y_A 9 IEVSQEPKKDYLVGD--SLDLSEGRFAVAYSNDTMEEHSFTDEGV 51 (98)
T ss_dssp EEECCCSCCEEETTT--CCCCCSCEEEEEETTSCEEEEESCCTTS
T ss_pred EEEEcCCCcEEecCC--ccccCCCEEEEEEcCCCEEEEecccCCc
Confidence 445555566655 74 7899999999999999999999988743
No 88
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=45.02 E-value=22 Score=28.88 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=26.0
Q ss_pred ccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 297 QCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 297 ~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
..++|++|.||--.+..|-|++.+||..-..
T Consensus 6 ~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNl 36 (130)
T 1m5q_A 6 NNLLGREVQVVLSNGEVYKGVLHAVDNQLNI 36 (130)
T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEECTTCCE
T ss_pred HHhCCCeEEEEECCCcEEEEEEEEEccccee
Confidence 4689999999988776655999999988664
No 89
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=43.96 E-value=9.9 Score=36.95 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred CCCcEEEeccccCCCceEEEEeee
Q 018661 123 KCGAGIVADEDIKRGEFVIEYVGE 146 (352)
Q Consensus 123 ~kG~GlfA~~~I~~G~~I~ey~Ge 146 (352)
..|+||+|+++|++|+.|+...-.
T Consensus 31 ~~GrGl~A~~~I~~ge~ll~IP~~ 54 (440)
T 2h21_A 31 TEGLGLVALKDISRNDVILQVPKR 54 (440)
T ss_dssp TTEEEEEESSCBCTTEEEEEEEGG
T ss_pred CCCCEEEEcccCCCCCEEEEeChh
Confidence 479999999999999999877554
No 90
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=43.71 E-value=23 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=24.1
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
....++|++|+|---.++.|.|++++||..-..
T Consensus 27 ~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNL 59 (113)
T 4emk_C 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNL 59 (113)
T ss_dssp -----CCSEEEEEETTSCEEEEEEEEECTTCCE
T ss_pred HHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccE
Confidence 556789999999998776666999999998763
No 91
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=41.58 E-value=15 Score=21.32 Aligned_cols=18 Identities=39% Similarity=1.125 Sum_probs=10.8
Q ss_pred ccccCCCCCCCCCCCCCCcc
Q 018661 68 CSCTASPGSSGVCDRDCHCG 87 (352)
Q Consensus 68 C~C~~~~~~~~~C~~~C~c~ 87 (352)
|.|.. .++..|+.+|.|.
T Consensus 3 CgCs~--tgtC~Cg~~CsC~ 20 (26)
T 1t2y_A 3 CGCSG--ASSCNCGSGCSCS 20 (26)
T ss_dssp CSCSS--TTTCCCSSSCCSS
T ss_pred cccCC--CccccCCCCcccc
Confidence 66665 3455666666663
No 92
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=40.64 E-value=33 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=27.1
Q ss_pred cccccccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 296 ~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
...++|++|.|---.+..|-|++.+||+.-..
T Consensus 10 L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl 41 (75)
T 1d3b_A 10 LHEAEGHIVTCETNTGEVYRGKLIEAEDNMNC 41 (75)
T ss_dssp HHHTTTSEEEEEETTSCEEEEEEEEECTTCCE
T ss_pred HHHhCCCEEEEEECCCcEEEEEEEEEccceeE
Confidence 45689999999999887766999999998763
No 93
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=38.99 E-value=79 Score=25.39 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=32.6
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCCeE---EEEee-cCce
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKH---SVLFE-DGES 337 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~~h---~v~y~-dg~~ 337 (352)
....++|++|.|---.+..|-|++.+||.+-..| .+.++ ||..
T Consensus 9 ~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~ 55 (126)
T 2y9a_D 9 VLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRV 55 (126)
T ss_dssp HHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCC
T ss_pred HHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcE
Confidence 3467899999998888877669999999998843 44553 6653
No 94
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=36.21 E-value=34 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.1
Q ss_pred Cccccc--ccEEEEEeCCCceeeEEEEeeeCCCCe
Q 018661 295 CPQCCI--GKVIRISHPKNESSFGIIRRFDEYSRK 327 (352)
Q Consensus 295 ~~~~~~--g~~i~~~~~~~~~~~g~v~~~~~~~~~ 327 (352)
....++ |.+|.||--.++.|-|++++||..-..
T Consensus 31 lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNl 65 (118)
T 1b34_B 31 VLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 65 (118)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCE
T ss_pred HHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEE
Confidence 345677 499999998777755999999988663
No 95
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=41.45 E-value=8 Score=30.87 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred CcccccccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCceeEE
Q 018661 295 CPQCCIGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGESEFI 340 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~~e~~ 340 (352)
.+.=-||..|-+-.|. ..|. |+|..---. -..+|.|||||+..|
T Consensus 54 kG~l~vG~~ve~~~~~-~~~~~~~I~~i~D~-S~YtVVFdDGD~ktL 98 (118)
T 2lcd_A 54 KGPLRVGAIVETRTSD-GSFQEAIISKLTDA-SWYTVVFDDGDERTL 98 (118)
Confidence 4444589999999984 5667 877554332 257899999998765
No 96
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=34.71 E-value=47 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=20.7
Q ss_pred eeeEEEEeeeCCCCeEEEEeecCceeE
Q 018661 313 SSFGIIRRFDEYSRKHSVLFEDGESEF 339 (352)
Q Consensus 313 ~~~g~v~~~~~~~~~h~v~y~dg~~e~ 339 (352)
+..|+|++||..++-==|.-|||..++
T Consensus 8 ~~~G~Vkwfn~~kGfGFI~~~~gg~Dv 34 (79)
T 1h95_A 8 KVLGTVKWFNVRNGYGFINRNDTKEDV 34 (79)
T ss_dssp EEEEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred ccceEEEEEECCCCcEEEecCCCCccE
Confidence 445999999999988888888865443
No 97
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=34.62 E-value=48 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.3
Q ss_pred eEEEEeeeCCCCeEEEEeecC
Q 018661 315 FGIIRRFDEYSRKHSVLFEDG 335 (352)
Q Consensus 315 ~g~v~~~~~~~~~h~v~y~dg 335 (352)
.|+|++||+.++-==|.-|||
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGG 23 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTE
T ss_pred ceEEEEEECCCCeEEEecCCC
Confidence 488999998888777777777
No 98
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=33.79 E-value=38 Score=23.96 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.2
Q ss_pred CCCeEEEEeec-CceeEEeccccce
Q 018661 324 YSRKHSVLFED-GESEFIDMAKVDW 347 (352)
Q Consensus 324 ~~~~h~v~y~d-g~~e~~~l~~e~~ 347 (352)
..+.-.|.|+| |.++.++|..-.-
T Consensus 32 ~~G~~wiKyED~G~e~E~d~~~v~l 56 (62)
T 1igq_A 32 AEGYAWLKYEDDGQEFEANLADVKL 56 (62)
T ss_dssp STTEEEEEETTTCCEEEEEGGGCEE
T ss_pred cCceEEEEEecCCcEEEEeccceEE
Confidence 45667899976 9999998876543
No 99
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=33.50 E-value=63 Score=28.50 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=33.9
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeC--CCCeEEEEeecCceeEEecc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDE--YSRKHSVLFEDGESEFIDMA 343 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~--~~~~h~v~y~dg~~e~~~l~ 343 (352)
-||.+|=.-|. +..|| |+|..=-+ ...+.+|.|+++..+.|+..
T Consensus 10 ~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs~~ 56 (213)
T 3dlm_A 10 IVSMRILGKKR-TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGN 56 (213)
T ss_dssp ETTCEEEEECT-TSBEEEEEEEEEEEETTEEEEEEEESSSCEEEECGG
T ss_pred EEccEEEEEec-CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEeecc
Confidence 48999999995 57899 98877333 45789999998877777643
No 100
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=32.56 E-value=27 Score=31.31 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=27.4
Q ss_pred CCCcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 293 QICPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 293 k~~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
+....++|+++|+|---.++.|.|++++||..-.
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MN 39 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMN 39 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEccccc
Confidence 3345678999999999877776699999998754
No 101
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=31.34 E-value=60 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEeeeCCCCeEEEEeecCcee
Q 018661 315 FGIIRRFDEYSRKHSVLFEDGESE 338 (352)
Q Consensus 315 ~g~v~~~~~~~~~h~v~y~dg~~e 338 (352)
.|+|++||..++-==|.-|||..+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~d 26 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGED 26 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCC
T ss_pred CEEEEEEECCCCeEEEecCCCCcc
Confidence 488999998888888887876444
No 102
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=31.04 E-value=52 Score=24.01 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=27.0
Q ss_pred ccccccEEEEEeCC--Cceee-EEEEeeeCCCC--eEEEEee
Q 018661 297 QCCIGKVIRISHPK--NESSF-GIIRRFDEYSR--KHSVLFE 333 (352)
Q Consensus 297 ~~~~g~~i~~~~~~--~~~~~-g~v~~~~~~~~--~h~v~y~ 333 (352)
.-.||.++.|+|+. +..+| +.|.+-+...+ +.-|-|.
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~ 46 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYY 46 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEET
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeC
Confidence 34699999999983 36788 98888776544 3566665
No 103
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=30.18 E-value=46 Score=27.07 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=25.7
Q ss_pred cccccEEEEEeCCCceee-EEEEeeeC----CCCeEEEEee
Q 018661 298 CCIGKVIRISHPKNESSF-GIIRRFDE----YSRKHSVLFE 333 (352)
Q Consensus 298 ~~~g~~i~~~~~~~~~~~-g~v~~~~~----~~~~h~v~y~ 333 (352)
--||.+|-++|+ |..|| +.|..-.. ...+.-|-|.
T Consensus 13 ~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~ 52 (133)
T 1wgs_A 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYV 52 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECT
T ss_pred cCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEecc
Confidence 469999999998 77888 98877553 2335666665
No 104
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=29.95 E-value=88 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEeeeCCCCeEEEEeecCceeEEe
Q 018661 315 FGIIRRFDEYSRKHSVLFEDGESEFID 341 (352)
Q Consensus 315 ~g~v~~~~~~~~~h~v~y~dg~~e~~~ 341 (352)
.|+|++||..++-==|.-|||....+-
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg~~dFvH 30 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENGDNRYFH 30 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCCceEEE
Confidence 499999999999888888888555543
No 105
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=29.57 E-value=58 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=17.4
Q ss_pred eEEEEeeeCCCCeEEEEeecC
Q 018661 315 FGIIRRFDEYSRKHSVLFEDG 335 (352)
Q Consensus 315 ~g~v~~~~~~~~~h~v~y~dg 335 (352)
.|+|+.||..++-==|.-|||
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGD 23 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTS
T ss_pred CEEEEEEECCCCEEEEecCCC
Confidence 488999998888877777887
No 106
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=29.23 E-value=58 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=20.6
Q ss_pred eeEEEEeeeCCCCeEEEEeecCceeEE
Q 018661 314 SFGIIRRFDEYSRKHSVLFEDGESEFI 340 (352)
Q Consensus 314 ~~g~v~~~~~~~~~h~v~y~dg~~e~~ 340 (352)
..|+|+.||+.++-==|.-+||..+.+
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g~~dvF 32 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDGSKDVF 32 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTCCCCEE
T ss_pred ccEEEEEEECCCCcEEEecCCCCccEE
Confidence 349999999998887788888854443
No 107
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=27.19 E-value=58 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.9
Q ss_pred EEEEeeeCCCCeEEEEeecC
Q 018661 316 GIIRRFDEYSRKHSVLFEDG 335 (352)
Q Consensus 316 g~v~~~~~~~~~h~v~y~dg 335 (352)
|+|++||..++-==|.-+||
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 88888988888877777888
No 108
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=26.79 E-value=26 Score=27.42 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.7
Q ss_pred EEEEEEccCCCCCCeEEEcCC
Q 018661 211 RIGIFATRDIKKGENLTYDYQ 231 (352)
Q Consensus 211 ~i~i~A~rdI~~GEELT~dY~ 231 (352)
-.++||.++|++||-|. .|.
T Consensus 15 G~GvfA~~~I~~G~~I~-ey~ 34 (119)
T 1n3j_A 15 GYGVFARKSFEKGELVE-ECL 34 (119)
T ss_dssp CCEEEECCCBCSCEEEC-CCC
T ss_pred eeEEEECCcCCCCCEEE-Eee
Confidence 47899999999999986 553
No 109
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=26.44 E-value=46 Score=23.37 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.0
Q ss_pred EEEEeeeCCCCeEEEEeecC
Q 018661 316 GIIRRFDEYSRKHSVLFEDG 335 (352)
Q Consensus 316 g~v~~~~~~~~~h~v~y~dg 335 (352)
|+|++||+.++-==|.-|||
T Consensus 3 G~Vk~fn~~kGfGFI~~~~g 22 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 88888888888777777776
No 110
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=26.06 E-value=74 Score=26.33 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=22.1
Q ss_pred CCCceeeEEEEeeeCCCCeEEEEeecCcee
Q 018661 309 PKNESSFGIIRRFDEYSRKHSVLFEDGESE 338 (352)
Q Consensus 309 ~~~~~~~g~v~~~~~~~~~h~v~y~dg~~e 338 (352)
+...|..|+|+.||..++-==|.-|||..+
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~D 87 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPD 87 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCcc
Confidence 344555599999999988888888887433
No 111
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=23.62 E-value=47 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.6
Q ss_pred EEEccCCCCCCeEEEc
Q 018661 214 IFATRDIKKGENLTYD 229 (352)
Q Consensus 214 i~A~rdI~~GEELT~d 229 (352)
.+|+++|++||+|+++
T Consensus 34 aVAl~~L~aG~~v~~~ 49 (105)
T 3k3s_A 34 AVALADLAEGTEVSVD 49 (105)
T ss_dssp EEESSCBCTTCEEEET
T ss_pred EEecCccCCCCEEeeC
Confidence 4789999999999864
No 112
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.50 E-value=1.1e+02 Score=22.88 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=31.3
Q ss_pred CcccccccEEEEEeC---CCceee-EEEEeeeCCC--CeEEEEeecCc
Q 018661 295 CPQCCIGKVIRISHP---KNESSF-GIIRRFDEYS--RKHSVLFEDGE 336 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~---~~~~~~-g~v~~~~~~~--~~h~v~y~dg~ 336 (352)
...-.||.++.|+++ .+..|| +.|.+.+... ...-|-|.+=.
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 345579999999997 577889 9998877643 35677776544
No 113
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=23.45 E-value=83 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=21.1
Q ss_pred ceeeEEEEeeeCCCCeEEEEeecCceeE
Q 018661 312 ESSFGIIRRFDEYSRKHSVLFEDGESEF 339 (352)
Q Consensus 312 ~~~~g~v~~~~~~~~~h~v~y~dg~~e~ 339 (352)
.+.-|+|++||..++-=-|.-+||..+.
T Consensus 15 ~~~~G~Vk~fn~~kGfGFI~~~~gg~dv 42 (101)
T 2bh8_A 15 GKMTGIVKWFNADKGFGFITPDDGSKDV 42 (101)
T ss_dssp -CEEEEEEEEEGGGTEEEEEESSSSCEE
T ss_pred ccceeEEEEEECCCCCEEEEeCCCCcEE
Confidence 3434999999999998878778875443
No 114
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=23.45 E-value=43 Score=26.63 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=26.3
Q ss_pred CcccccccEEEEEeCCCceeeEEEEeeeCCCC
Q 018661 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (352)
Q Consensus 295 ~~~~~~g~~i~~~~~~~~~~~g~v~~~~~~~~ 326 (352)
....++|.+|.|--..++.|-|++++||..-.
T Consensus 32 lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mN 63 (121)
T 2fwk_A 32 LIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVN 63 (121)
T ss_dssp HHHHTBTSBCEEEETTTEEECCEEEEECTTCC
T ss_pred HHHHHcCCeEEEEECCCcEEEEEEEEEcccCC
Confidence 44678999999998877765599999998765
No 115
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.93 E-value=69 Score=23.97 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=9.7
Q ss_pred eEEEEeeeCCCCeEEEEeecC
Q 018661 315 FGIIRRFDEYSRKHSVLFEDG 335 (352)
Q Consensus 315 ~g~v~~~~~~~~~h~v~y~dg 335 (352)
.|+|++|| ++-==|.-|||
T Consensus 20 ~G~Vk~f~--kGfGFI~~ddg 38 (88)
T 2yty_A 20 LGYVATLK--DNFGFIETANH 38 (88)
T ss_dssp EEEEEEEC--SSEEEEECSSS
T ss_pred eEEEEEEE--CCccEEecCCC
Confidence 36666665 34344444554
No 116
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=21.69 E-value=67 Score=24.57 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCCCCCCcCCCcccccccEEEEEeCCCceee---EEEE
Q 018661 285 SRPPYNQRQICPQCCIGKVIRISHPKNESSF---GIIR 319 (352)
Q Consensus 285 ~~~~~~q~k~~~~~~~g~~i~~~~~~~~~~~---g~v~ 319 (352)
.+-.+.+++....+++|.+|+|....+..+. |+|.
T Consensus 3 ~~~~~t~~~l~~~dl~G~~v~Vv~S~~pslVGi~GiVV 40 (96)
T 1v76_A 3 HRGRVTRRNIIWHELIGLRVRIVGSTHPAFVGIEGYVI 40 (96)
T ss_dssp --CCCCTTGGGTSCCTTCEEEEEEESSGGGTTCEEEEE
T ss_pred cccccCHHHhhhhhhcCCEEEEEEcCCCCccCcEEEEE
Confidence 3446677888899999999999999888766 6554
No 117
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=20.59 E-value=1.3e+02 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.2
Q ss_pred ccccEEEEEeCCCceee-EEEEeeeCC-CCeEEEEeecCc
Q 018661 299 CIGKVIRISHPKNESSF-GIIRRFDEY-SRKHSVLFEDGE 336 (352)
Q Consensus 299 ~~g~~i~~~~~~~~~~~-g~v~~~~~~-~~~h~v~y~dg~ 336 (352)
=.|.+|-.-||.--+|| ++|.+=-.. ++..+|+|||-+
T Consensus 118 ~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde 157 (180)
T 3mea_A 118 QKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTS 157 (180)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTT
T ss_pred CCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCC
Confidence 36889999999999999 988875332 368999997754
No 118
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=20.24 E-value=1.2e+02 Score=29.75 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=31.5
Q ss_pred cccEEEEEeCCCceee-EEEEeeeCCCCeEEEEeecCc
Q 018661 300 IGKVIRISHPKNESSF-GIIRRFDEYSRKHSVLFEDGE 336 (352)
Q Consensus 300 ~g~~i~~~~~~~~~~~-g~v~~~~~~~~~h~v~y~dg~ 336 (352)
.|.+|-.-||.--+|| ++|.+ =+.+++-.|+|||.+
T Consensus 460 ~~~~v~a~~p~tt~fy~a~v~~-~~~~~~~~~~f~~~~ 496 (522)
T 3mp6_A 460 PGTKVLARYPETTTFYPAIVIG-TKRDGTCRLRFDGEE 496 (522)
T ss_dssp TTCEEEEECTTCSEEEEEEEEE-ECTTSCEEEEETTC-
T ss_pred CCCEEEEECCCCcceEeEEEec-CCCCCeEEEEecCCC
Confidence 8999999999999999 99998 577788999998865
Done!