BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018662
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L S N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 133/273 (48%), Gaps = 20/273 (7%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD--- 83
T L L + Q+ D+D ++ TNL L+L++N ++ + S +S L++L++LS N + D
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP 168
Query: 84 -AAIEPISRWD-------------ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
A + + R D L LE LI +N++ I + I L ++ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXX 189
+ L+++T+ L +L ++ N++ + + L L+ G+N++ +
Sbjct: 229 LKDIGTLASLTN-LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 190 XXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLST 248
N+++ ++ + LK + ++L N ++ + L+ L+ +N +S + L+
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN 347
Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
L N++ L N+++ + + NL+R+ L LND
Sbjct: 348 LTNINWLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
G +NVTDT+ + L + + ++ +E+ ++L + F +N+L +
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
N+I + L L + ++L +N++T + + L L LS N IS +
Sbjct: 87 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
LS L +L L SSN++T + + NL+ LE L ++ N++ + + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L S N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD--- 83
T L L + Q+ D+D ++ TNL L+L++N ++ + S +S L++L++LS N + D
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP 168
Query: 84 -AAIEPISRWD-------------ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
A + + R D L LE LI +N++ I + I L ++ N+
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXX 189
+ L+++T+ L +L ++ N++ + + L L+ G+N++ +
Sbjct: 229 LKDIGTLASLTN-LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 190 XXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLST 248
N+++ ++ + LK + ++L N ++ + L+ L+ S+N +S + L+
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLAN 347
Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
L N++ L N+++ + + NL+R+ L LND
Sbjct: 348 LTNINWLSAGHNQISDLTPLANLTRITQLGLND 380
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
G +NVTDT+ + L + + ++ +E+ ++L + F +N+L +
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
N+I + L L + ++L +N++T + + L L LS N IS +
Sbjct: 87 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
LS L +L L SSN++T + + NL+ LE L ++ N++ + + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L S N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 129/254 (50%), Gaps = 8/254 (3%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
L+L+S + D+ ++ T+L +L+ ++N++T L +++L+ L++L + N + D
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSD----- 187
Query: 89 ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
IS L LE LI +N++ I + I L ++ N++ L+++T+ L +L +
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN-LTDLDL 246
Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVN-LCGLKC 207
+ N++ + + L L+ G+N++ + N+++ ++ + LK
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 306
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD 267
+ ++L N ++ + L+ L+ +N +S + L+ L N++ L N+++ +
Sbjct: 307 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
Query: 268 IQNLSRLEDLWLND 281
+ NL+R+ L LND
Sbjct: 367 LANLTRITQLGLND 380
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 14/269 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
T L L + Q+ D+D ++ TNL L+L++N ++ + S +S L++L++L+ N + D +
Sbjct: 110 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTD--L 166
Query: 87 EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD---VSFNEITSSHGLSNVTDTL 143
+P++ L LE L + NK + D+S+ KL+ + + N+I+ L +T+ L
Sbjct: 167 KPLAN---LTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDITPLGILTN-L 219
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVN-L 202
EL ++ N++ + + +L L+ +N++ + G N+I ++ L
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 279
Query: 203 CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
GL + + L N+L + L L L N IS + +S+L L L +NK+
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 339
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESIV 291
+ V + NL+ + L NQI L +
Sbjct: 340 SDVSSLANLTNINWLSAGHNQISDLTPLA 368
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
G +NVTDT+ + L + + ++ +E+ ++L + F +N+L +
Sbjct: 27 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
N+I + L L + ++L +N++T + + L L LS N IS +
Sbjct: 87 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
LS L +L L+ SSN++T + + NL+ LE L ++ N++ + + +
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 104
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 105 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 158
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 159 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISPI 305
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 130/272 (47%), Gaps = 19/272 (6%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID---- 82
T L L + Q+ D+D ++ TNL L+L++N ++ + S +S L++L++LS + D
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPL 173
Query: 83 ------------DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
+ IS L LE LI +N++ I + I L ++ N++
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 233
Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXX 190
L+++T+ L +L ++ N++ + + L L+ G+N++ +
Sbjct: 234 KDIGTLASLTN-LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 191 XXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTL 249
N+++ ++ + LK + ++L N ++ + L+ L+ +N +S + L+ L
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 352
Query: 250 VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
N++ L N+++ + + NL+R+ L LND
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLND 384
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 48 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 103
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 104 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 157
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 158 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 216
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 276
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 277 SNISPLAGLTALTNLELNENQLEDISPI 304
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 19/272 (6%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID---- 82
T L L + Q+ D+D ++ TNL L+L++N ++ + S +S L++L++LS + D
Sbjct: 114 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPL 172
Query: 83 ------------DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
+ IS L LE LI +N++ I + I L ++ N++
Sbjct: 173 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 232
Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXX 190
L+++T+ L +L ++ N++ + + L L+ G+N++ +
Sbjct: 233 KDIGTLASLTN-LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 291
Query: 191 XXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTL 249
N+++ ++ + LK + ++L N ++ + L+ L+ ++N +S + L+ L
Sbjct: 292 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL 351
Query: 250 VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
N++ L N+++ + + NL+R+ L LND
Sbjct: 352 TNINWLSAGHNQISDLTPLANLTRITQLGLND 383
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPI 300
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 117/247 (47%), Gaps = 28/247 (11%)
Query: 35 QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
Q+ DL + T L LD+++N+++ + S ++ L+NL+ L N I D I P+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISD--ITPLG---I 214
Query: 95 LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
L L+EL L N+L I ++ L+ D++ N+I++ LS +T L EL + N++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQIS 273
Query: 155 KMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQ 214
+ + L LE N+L + + LK + ++L
Sbjct: 274 NISPLAGLTALTNLELNENQLE---------------------DISPISNLKNLTYLTLY 312
Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
N ++ + L+ L+ S+N +S + L+ L N++ L N+++ + + NL+R+
Sbjct: 313 FNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRI 372
Query: 275 EDLWLND 281
L LND
Sbjct: 373 TQLGLND 379
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
T L + +D VE+ NLT+++ + N+LT I+ L NL KL + N I D
Sbjct: 44 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I P++ L GL L +N++ I + L+ ++S N I+ LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
++L N+V ++ + + L+ L+ SN++ + N+I +
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
G L + ++SL N+L + L +L L++N IS + LS L L L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
+ + + L+ L +L LN+NQ+E + I
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPI 300
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 28/247 (11%)
Query: 35 QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
Q+ DL + T L LD+++N+++ + S ++ L+NL+ L N I D I P+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISD--ITPLG---I 214
Query: 95 LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
L L+EL L N+L I ++ L+ D++ N+I++ LS +T L EL + N++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQIS 273
Query: 155 KMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQ 214
+ + L LE N+L + + LK + ++L
Sbjct: 274 NISPLAGLTALTNLELNENQLE---------------------DISPISNLKNLTYLTLY 312
Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
N ++ + L+ L+ +N +S + L+ L N++ L N+++ + + NL+R+
Sbjct: 313 FNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRI 372
Query: 275 EDLWLND 281
L LND
Sbjct: 373 TQLGLND 379
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 20/281 (7%)
Query: 35 QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRWD 93
++ + +E+ TNL L+L N++T IS LSNL KL+ NL I I IS
Sbjct: 55 KVASIQGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLT---NLYIGTNKITDISALQ 107
Query: 94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNE 152
L L EL L ++ + I ++ K ++ N ++ LSN T L L V++++
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTG-LNYLTVTESK 166
Query: 153 VPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI----KVVNLCGLKCI 208
V + I + DL L N++ + N+I V N L +
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSL 226
Query: 209 KKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI 268
K + +N++T + L L + N IS + + L L L+V SN+++ + +
Sbjct: 227 K---IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVL 283
Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
NLS+L L+LN+NQ+ + + V G LTT++L N
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDX---EVIGGLTNLTTLFLSQN 321
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
L+ I K+ + ++ S++G E LE L L+ N I+ + LS LV L L + +NK+T
Sbjct: 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIV 291
+ +QNL+ L +L+LN++ I + +
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLA 129
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 92/213 (43%), Gaps = 9/213 (4%)
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
A++ + + L + +L++ K+ I + L +++ N+IT LSN+ L
Sbjct: 32 ASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK-L 90
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNR-----IK 198
LY+ N++ + +++ +L+ L + + + G N
Sbjct: 91 TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSP 150
Query: 199 VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVS 258
+ N GL +++ +++ + L L L++N I + L++L +LH
Sbjct: 151 LSNXTGLNY---LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207
Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESLESIV 291
N++T + + N +RL L + +N+I L +
Sbjct: 208 VNQITDITPVANXTRLNSLKIGNNKITDLSPLA 240
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
N I + G SNVTDT+ + L V +E +++ ++L LE N++ +
Sbjct: 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
N +K V+ + GL+ IK + L S ++T + L+ LYL N
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
I+ + L+ L NL L + + +++ + + NLS+L L +DN+I + + S
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-----ASL 194
Query: 299 ETLTTIYLENN 309
L ++L+NN
Sbjct: 195 PNLIEVHLKNN 205
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 51/248 (20%)
Query: 17 DQAVEIDLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS 75
D + DL T L + ++ V++ NL L+L N++T L + + +L+ + +L
Sbjct: 33 DTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-APLKNLTKITELE 91
Query: 76 LRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
L N P+ A+AGL+ + K L + ++T G
Sbjct: 92 LSGN--------PLKNVSAIAGLQSI----------------KTLDLTSTQITDVTPLAG 127
Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRN 195
LSN L+ LY+ N++ + + +LQ L G+ ++ +
Sbjct: 128 LSN----LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---------------- 167
Query: 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVL 255
+ NL L +K N+++ + L E++L +N IS + L+ NL ++
Sbjct: 168 --PLANLSKLTTLKA---DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
Query: 256 DVSSNKLT 263
+++ +T
Sbjct: 223 TLTNQTIT 230
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
N + ++ G SNVTD + + L V +E I++ ++L LE N++ +
Sbjct: 26 NAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLT 85
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
N +K V+ + GL+ IK + L S ++T + L+ LYL N
Sbjct: 86 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 145
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
I+ + L+ L NL L + +N++ + + NLS+L L +DN+I + + S
Sbjct: 146 QITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL-----ASL 200
Query: 299 ETLTTIYLENN 309
L ++L++N
Sbjct: 201 PNLIEVHLKDN 211
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98
++ +++ NL L+L N++T L + + +L+ + +L L N P+ A+AGL
Sbjct: 62 IEGIQYLNNLIGLELKDNQITDL-TPLKNLTKITELELSGN--------PLKNVSAIAGL 112
Query: 99 EELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE 158
+ + K L + ++T GLSN L+ LY+ N++ +
Sbjct: 113 QSI----------------KTLDLTSTQITDVTPLAGLSN----LQVLYLDLNQITNISP 152
Query: 159 IEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRL 218
+ +LQ L G+N++ + + NL L ++ N++
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLT------------------PLANLSKLTTLRA---DDNKI 191
Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVS 258
+ + L E++L N IS + L+ L NL ++ ++
Sbjct: 192 SDISPLASLPNLIEVHLKDNQISDVSPLANLSNLFIVTLT 231
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI------- 81
LDLTS Q+ D+ + +NL L L N++T++ S ++ L+NL+ LS+ N +
Sbjct: 118 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDLTPLA 176
Query: 82 ----------DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
DD I IS +L L E+ L+DN +I DVS LS
Sbjct: 177 NLSKLTTLRADDNKISDISPLASLPNLIEVHLKDN---QISDVSPLANLS 223
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
K+ +L G++ ++ +SL N + ++ + LEEL++S+N I+ + G+ LVNL VL
Sbjct: 62 KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
+S+NK+T +D + L +LEDL L N +
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 86 IEPISRWDA----LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
I PI + DA L + L L N + KI +S + L + + N I L V D
Sbjct: 34 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
TL+EL++S N++ + IE +L++L +N++
Sbjct: 94 TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSR----LEDLWLNDNQI 284
A + L LS N I K+ LS + NL +L + N L+ I+NL LE+LW++ NQI
Sbjct: 49 ACKHLALSTNNIEKISSLSGMENLRILSLGRN---LIKKIENLDAVADTLEELWISYNQI 105
Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
SL I + V L +Y+ NN
Sbjct: 106 ASLSGIEKLV-----NLRVLYMSNN 125
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 58 LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDV-SI 116
+ +D+ +S L K L+L N IE IS + L L L N + KI ++ ++
Sbjct: 37 IEKMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLIKKIENLDAV 91
Query: 117 FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169
L +S+N+I S G+ + + L+ LY+S N++ EI+ L LE
Sbjct: 92 ADTLEELWISYNQIASLSGIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLE 143
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
K+ +L G++ ++ +SL N + ++ + LEEL++S+N I+ + G+ LVNL VL
Sbjct: 63 KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 122
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
+S+NK+T +D + L +LEDL L N +
Sbjct: 123 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 153
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 86 IEPISRWDA----LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
I PI + DA L + L L N + KI +S + L + + N I L V D
Sbjct: 35 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 94
Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
TL+EL++S N++ + IE +L++L +N++
Sbjct: 95 TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 128
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSR----LEDLWLNDNQI 284
A + L LS N I K+ LS + NL +L + N L+ I+NL LE+LW++ NQI
Sbjct: 50 ACKHLALSTNNIEKISSLSGMENLRILSLGRN---LIKKIENLDAVADTLEELWISYNQI 106
Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
SL I + V L +Y+ NN
Sbjct: 107 ASLSGIEKLV-----NLRVLYMSNN 126
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 58 LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDV-SI 116
+ +D+ +S L K L+L N IE IS + L L L N + KI ++ ++
Sbjct: 38 IEKMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLIKKIENLDAV 92
Query: 117 FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169
L +S+N+I S G+ + + L+ LY+S N++ EI+ L LE
Sbjct: 93 ADTLEELWISYNQIASLSGIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLE 144
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIE 87
L L +LHD+ +++ TNLT L LT N+L SL + + L+NLK+L L +N +
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--- 124
Query: 88 PISRWDALAGLEELILRDNKLMKIPDVSIFKK---LSVFDVSFNEITS-SHGLSNVTDTL 143
P +D L L L L N+L +P +F K L+ D+S+N++ S G+ + L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 144 KELYVSKNEV 153
K+L + +N++
Sbjct: 184 KDLRLYQNQL 193
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L + NKL + ++
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALK 82
Query: 270 NLSRLEDLWLNDNQIESLESIV 291
L+ L L L NQ++SL + V
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGV 104
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 117 FKKLSVFD-VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
KK SV D V+ NE+ S + ++ + +++ ++ I++ +++ L G N+L
Sbjct: 26 LKKKSVTDAVTQNELNS----------IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL 75
Query: 176 RVMXXXXXXXXXXXXXXGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIAL 230
+ N+++ + L +K++ L N+L S+ F++ L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
LYL HN + + L NL LD+ +N+L + + L++L+ L LNDNQ
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ--- 192
Query: 287 LESIVEAVAGSRETLTTIYLENNP 310
L+S+ + V +LT I+L NNP
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNNP 216
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIE 87
L L +LHD+ +++ TNLT L LT N+L SL + + L+NLK+L L +N +
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--- 124
Query: 88 PISRWDALAGLEELILRDNKLMKIPDVSIFKK---LSVFDVSFNEITS-SHGLSNVTDTL 143
P +D L L L L N+L +P +F K L+ D+ N++ S G+ + L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPK-GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 144 KELYVSKNEV 153
K+L ++ N++
Sbjct: 184 KQLSLNDNQL 193
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L + NKL + ++
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALK 82
Query: 270 NLSRLEDLWLNDNQIESLESIV 291
L+ L L L NQ++SL + V
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGV 104
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----- 81
T L+L++ Q+ D+ +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 69 TSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS 127
Query: 82 ------------DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
+ I I+ L LE L L +NK+ I +S KL + N+
Sbjct: 128 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 187
Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
I+ L+ +T L+ LY+SKN + + + +L +LE S
Sbjct: 188 ISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 229
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 117 FKKLSVFD-VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
KK SV D V+ NE+ S + ++ + +++ ++ I++ +L L +N++
Sbjct: 29 LKKKSVTDAVTQNELNS----------IDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQI 78
Query: 176 RVMXXXXXXXXXXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELY 234
+ N++ + L LK + + L N++ + ++ L+ L
Sbjct: 79 TDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 138
Query: 235 LSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAV 294
L HNGIS + GL L L L + +NK+T + + L++L+ L L DNQI S + +
Sbjct: 139 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPL 194
Query: 295 AGSRETLTTIYLENN 309
AG + L +YL N
Sbjct: 195 AGLTK-LQNLYLSKN 208
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 47/82 (57%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L NL L++S+N++T + IQ
Sbjct: 26 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQ 85
Query: 270 NLSRLEDLWLNDNQIESLESIV 291
L + L+LN N++ ++ +
Sbjct: 86 YLPNVTKLFLNGNKLTDIKPLA 107
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 53/341 (15%)
Query: 9 PSAEATNPDQAV------------EIDLSNTVLDLTSFQLHDLDSVEFPT--NLTELDLT 54
P E + D+AV I +LDL ++ L+ EF + +L EL+L
Sbjct: 5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 55 ANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD 113
N +++++ ++L NL+ L LR N + + P+ + L+ L +L + +NK++ + D
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLD 121
Query: 114 VSI--FKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQIL 168
L +V N++ SH + ++L++L + K + + E + H H L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 169 EFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLK--------CIKKISLQSNRLTS 220
RLR + R+KV+ + C+ ++L S +T
Sbjct: 182 -----RLRHLNINAIRDYSFKRLY---RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 221 MK-------GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQ 269
+ L L LS+N IS +EG L L+ L + + +L +V+ +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 270 NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
L+ L L ++ NQ+ +LE E+V S L T+ L++NP
Sbjct: 294 GLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNP 331
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 193 GRNRIKVVN---LCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGIS--KMEG 245
G+NRIK +N ++++ L N +++++ F L L L N + +
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99
Query: 246 LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
+ L NL LD+S NK+ ++ D Q+L L+ L + DN + + + S E LT
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Query: 304 IYLENNPQNLQIILLPSDKFSQIYSRLIL 332
+ + +P++ S ++ ++L
Sbjct: 160 -------EKCNLTSIPTEALSHLHGLIVL 181
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQN-------- 79
+D +S +L + S P + +LDL +N+L+SL S+ H L+ L+ L L N
Sbjct: 21 VDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 80 -----------LIDDAAIE--PISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124
+ D ++ PI +D L L EL L N+L +P KL+
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 125 VSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLR 176
+ +NE+ S G+ + +LKEL + N++ ++ E + +L+ L+ +N+L+
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 22/81 (27%)
Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD 266
KK+ LQSN+L+S+ K F L LYL+ N K++ L +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGI---------------- 80
Query: 267 DIQNLSRLEDLWLNDNQIESL 287
+ L LE LW+ DN++++L
Sbjct: 81 -FKELKNLETLWVTDNKLQAL 100
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 18 QAVEIDLSNTVLDLTSFQLHDLDSVEFP-------TNLTELDLTANRLTSLDSRI-SHLS 69
QA+ I + + +++L +L P T LT L L N L SL + L+
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD 113
+LK+L L N + P +D L L+ L L +N+L ++P+
Sbjct: 158 SLKELRLYNNQLKRV---PEGAFDKLTELKTLKLDNNQLKRVPE 198
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
+ L+L++N I+K+E LVNL L +SNKLT + L++L L LNDN
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH--- 92
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI 315
L+SI + ++LT IYL NNP + +
Sbjct: 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 44 FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
PT+ L L N++T L+ + HL NL++L N + AI P +D L L +L
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--TAI-PTGVFDKLTQLTQLD 87
Query: 103 LRDNKLMKIP 112
L DN L IP
Sbjct: 88 LNDNHLKSIP 97
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 36 LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN---------------- 79
+ L ++F TNL EL L+ N+++ L S + L+ L++LS+ +N
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
+D+ + L LE L +R+NKL I + KL V D+ NEIT++ GL+
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
L ++++S+ NRL ++ G L L+L +N + + L L NL +L + +NKL
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS 142
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324
+ + LS+LE L L+ N+I + + + LT N P Q L ++
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202
Query: 325 QIYSRLILMYFF 336
R I Y+
Sbjct: 203 DPDGRWISPYYI 214
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 128 NEITSSHGLSNVTDTL--KELYVSKN------EVPKMEEIEHFHDLQILEFGSNRLRVMX 179
N + + G +VTD + KEL +N + + ++ F +L+ L N++ +
Sbjct: 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79
Query: 180 XXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
RNR+K +N C+ ++ L +N L LE L + +N
Sbjct: 80 PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139
Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL-WLN 280
+ + L L L VLD+ N++T + L+RL+ + W++
Sbjct: 140 LKSIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWID 178
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Query: 88 PISRWDALAGLEELILRDNKLMKIPDVSIFKKLSV---FDVSFNEITSSHGLSNVTDTLK 144
PI++ GL + ++ + D+ K+LS F+ + I S G+ T+ LK
Sbjct: 8 PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN-LK 66
Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCG 204
EL++S N++ + ++ L+ L NRL+ + +L
Sbjct: 67 ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIH 126
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNK 261
LK ++ +S+++N+L S+ LE L L N I+ GL+ L ++ +D++ K
Sbjct: 127 LKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 48/315 (15%)
Query: 29 LDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
L+L + D+ S F T L ELDLTA L L S + L+ LKKL L N D
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 87 EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLS----NV 139
+ + +L L +R N V +KL D+S N+I +S S N+
Sbjct: 316 ISAANFPSLT---HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI 197
+ L+ L +S NE ++ + L++L+ RL + + +
Sbjct: 373 SH-LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI-------NAPQSPFQNLHFL 424
Query: 198 KVVN-------------LCGLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHNG 239
+V+N L GL ++ ++L+ N +T + +LE L LS G
Sbjct: 425 QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 240 ISKM--EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN--DNQIESLESIVEAVA 295
+ + + +L + +D+S N LT D I +LS L+ ++LN N I + + +
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLT-CDSIDSLSHLKGIYLNLAANSINIISPRLLPIL 543
Query: 296 GSRETLTTIYLENNP 310
+ +TI L +NP
Sbjct: 544 SQQ---STINLSHNP 555
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 48/297 (16%)
Query: 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
+ L ELDLTA L+ L S + LS LKKL L N ++ S + +L L I +
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGN 335
Query: 106 NKLMKIPDVSI--FKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEVP---KM 156
K +++ + + L D+S ++I +S L N++ L+ L +S NE P K
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNE-PLSLKT 393
Query: 157 EEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC------------- 203
E + L++L+ RL+V + +KV+NL
Sbjct: 394 EAFKECPQLELLDLAFTRLKV-------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 204 GLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLD 256
GL ++ ++LQ N + + LE L LS +S ++ ++L ++ +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 257 VSSNKLTLVDDIQNLSRLEDLWLN--DNQIE-SLESIVEAVAGSRETLTTIYLENNP 310
+S N+LT I+ LS L+ ++LN N I L S++ ++ R TI L NP
Sbjct: 507 LSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR----TINLRQNP 558
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36 LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
+ + +++ N+T+L L N+LT + +++L NL L L +N I
Sbjct: 76 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 134
Query: 82 ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+
Sbjct: 135 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 194
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+T L+ LY+SKN + + + +L +LE S
Sbjct: 195 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 199
Query: 303 TIYLENN 309
+YL N
Sbjct: 200 NLYLSKN 206
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 75 SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
S+ Q + +++ I+ + L + +L L NKL I ++ K L + N+I
Sbjct: 65 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGR 194
LK L + N + + + H L+ L G+N++
Sbjct: 125 -SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 165
Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
+ L L + +SL+ N+++ + L+ LYLS N IS + L+ L NL V
Sbjct: 166 ---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 222
Query: 255 LDVSS 259
L++ S
Sbjct: 223 LELFS 227
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L ++ NKLT + +
Sbjct: 46 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLT 105
Query: 270 NLSRLEDLWLNDNQI 284
NL L L+L++N+I
Sbjct: 106 NLKNLGWLFLDENKI 120
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41 SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
+++ N+T+L L N+LT + +++L NL L L +N I +
Sbjct: 81 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 198
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+ LY+SKN + + + +L +LE S
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 199
Query: 303 TIYLENN 309
+YL N
Sbjct: 200 NLYLSKN 206
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 75 SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
S+ Q + +++ I+ + L + +L L NKL I ++ K L + N+I
Sbjct: 65 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGR 194
LK L + N + + + H L+ L G+N++
Sbjct: 125 -SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 165
Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
+ L L + +SL+ N+++ + L+ LYLS N IS + L+ L NL V
Sbjct: 166 ---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 222
Query: 255 LDVSS 259
L++ S
Sbjct: 223 LELFS 227
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L ++ NKLT + +
Sbjct: 46 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLT 105
Query: 270 NLSRLEDLWLNDNQI 284
NL L L+L++N+I
Sbjct: 106 NLKNLGWLFLDENKI 120
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41 SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
+++ N+T+L L N+LT + +++L NL L L +N I +
Sbjct: 81 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 139
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 198
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+ LY+SKN + + + +L +LE S
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDVLELFS 227
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 85 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 144
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 145 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 199
Query: 303 TIYLENN 309
+YL N
Sbjct: 200 NLYLSKN 206
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 22/185 (11%)
Query: 75 SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
S+ Q + +++ I+ + L + +L L NKL I ++ K L + N+I
Sbjct: 65 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGR 194
LK L + N + + + H L+ L G+N++
Sbjct: 125 -SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 165
Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
+ L L + +SL+ N+++ + L+ LYLS N IS + L+ L NL V
Sbjct: 166 ---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 222
Query: 255 LDVSS 259
L++ S
Sbjct: 223 LELFS 227
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L ++ NKLT + +
Sbjct: 46 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLT 105
Query: 270 NLSRLEDLWLNDNQI 284
NL L L+L++N+I
Sbjct: 106 NLKNLGWLFLDENKI 120
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41 SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
+++ N+T+L L N+LT + +++L NL L L +N I +
Sbjct: 58 GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 116
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 175
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+ LY+SKN + + + +L +LE S
Sbjct: 176 QNLYLSKNHISDLRALAGLKNLDVLELFS 204
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 62 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 121
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 122 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 176
Query: 303 TIYLENN 309
+YL N
Sbjct: 177 NLYLSKN 183
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 75 SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
S+ Q + +++ I+ + L + +L L NKL I ++ K L + N+I
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 101
Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGR 194
L LK L + N + + + H L+ L G+N++
Sbjct: 102 SLK-DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 142
Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
+ L L + +SL+ N+++ + L+ LYLS N IS + L+ L NL V
Sbjct: 143 ---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 199
Query: 255 LDVSS 259
L++ S
Sbjct: 200 LELFS 204
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQ 269
K +L+ +T E +++++ +++ I ++G+ L N+ L ++ NKLT + +
Sbjct: 23 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLT 82
Query: 270 NLSRLEDLWLNDNQI 284
NL L L+L++N+I
Sbjct: 83 NLKNLGWLFLDENKI 97
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 46 TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
++L L L N+ L++ + L+NL+ L+L Q +D A + + + L LE L+LR
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLR 137
Query: 105 DNKLMKIPDVSIF---KKLSVFDVSFNEITS 132
DN + KI S F ++ V D++FN++ S
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 52 DLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK 110
DL+ +++ +L S SH ++L++L+L QN I+ I+ + W L L+EL L N+L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN--KIDDNAFW-GLTHLKELALDTNQLKS 337
Query: 111 IPDVSIFKKLS 121
+PD IF +L+
Sbjct: 338 VPD-GIFDRLT 347
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 46 TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
++L L L N+ L++ + L+NL+ L+L Q +D A + + + L LE L+LR
Sbjct: 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLR 137
Query: 105 DNKLMKIPDVSIF---KKLSVFDVSFNEITS 132
DN + KI S F ++ V D++FN++ S
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 46 TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
T+L +L+L+ N L S+DSR+ +L L+ L L N I + L L+EL L
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL---GLPNLKELALD 379
Query: 105 DNKLMKIPDVSIFKKLS 121
N+L +PD IF +L+
Sbjct: 380 TNQLKSVPD-GIFDRLT 395
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36 LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
+ + +++ N+T+L L N+LT + +++L NL L L +N I
Sbjct: 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113
Query: 82 ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+T L+ LY+SKN + + + +L +LE S
Sbjct: 174 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 206
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
+ GL L L L + +NK+T + + L++L+ L L DNQI +
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 168
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 37/207 (17%)
Query: 53 LTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP 112
+T N L S+D I++ S++K + Q L + +L L NKL I
Sbjct: 37 VTQNELNSIDQIIANNSDIKSVQGIQ---------------YLPNVTKLFLNGNKLTDIK 81
Query: 113 DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
++ K L + N+I LK L + N + + + H L+ L G+
Sbjct: 82 PLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 140
Query: 173 NRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEE 232
N++ + L L + +SL+ N+++ + L+
Sbjct: 141 NKI---------------------TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179
Query: 233 LYLSHNGISKMEGLSTLVNLHVLDVSS 259
LYLS N IS + L+ L NL VL++ S
Sbjct: 180 LYLSKNHISDLRALAGLKNLDVLELFS 206
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQI 284
E +++++ +++ I ++G+ L N+ L ++ NKLT + + NL L L+L++N+I
Sbjct: 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI 99
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
+ LYL N I+K+E L L LD+ +N+LT++ L++L L LNDNQ
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ--- 89
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI--ILLPSDKFSQIYSRLILMYFFRSH 339
L+SI + +LT I+L NNP + IL S SQ + L+ Y H
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQ-HPWLVFGYLNLDH 143
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
+ S T +D + L + + PT L L NR+T L+ + L+ L +L L N
Sbjct: 6 QCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNN 64
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIP 112
+ + P +D L L +L L DN+L IP
Sbjct: 65 QL---TVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 211 ISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLVD 266
++L N++ +K F+ LE L LS N I +E + L NL+ L++ N+LT +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 267 D--IQNLSRLEDLWLNDNQIESLES 289
+ LS+L++LWL +N IES+ S
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPS 153
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 72/285 (25%)
Query: 46 TNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
TN L+L N++ + + HL +L+ L L +N I IE I ++ LA L L L
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--TIE-IGAFNGLANLNTLELF 120
Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
DN+L IP+ F LS LKEL++ N + E I +
Sbjct: 121 DNRLTTIPN-GAFVYLS--------------------KLKELWLRNNPI---ESIPSY-- 154
Query: 165 LQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGF 224
NRI + L +K++S S F
Sbjct: 155 ----------------------------AFNRIPSLRRLDLGELKRLSY-----ISEGAF 181
Query: 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDN 282
E L L L+ + ++ L+ L+ L LD+S N L+ + Q L L+ LW+ +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 283 QIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIY 327
QI+ +E + ++L I L +N + LLP D F+ ++
Sbjct: 242 QIQVIE---RNAFDNLQSLVEINLAHN----NLTLLPHDLFTPLH 279
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----------------- 81
+ +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119
Query: 82 DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT- 178
Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
L+ LY+SKN + + + +L +LE S
Sbjct: 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 181
Query: 303 TIYLENN 309
+YL N
Sbjct: 182 NLYLSKN 188
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
+ LYL N I+K+E L L LD+ +N+LT++ L++L L LNDNQ
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ--- 97
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI--ILLPSDKFSQIYSRLILMYF 335
L+SI + ++LT I+L NNP + IL S SQ + L+ Y
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ-HPGLVFGYL 147
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
+ S T +D + L + + PT L L N++T L+ + L+ L +L L N
Sbjct: 14 QCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 72
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIP 112
+ + P +D L L +L L DN+L IP
Sbjct: 73 QL---TVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----------------- 81
+ +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 117
Query: 82 DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT- 176
Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
L+ LY+SKN + + + +L +LE S
Sbjct: 177 KLQNLYLSKNHISDLRALAGLKNLDVLELFS 207
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 65 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 124
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 125 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 179
Query: 303 TIYLENN 309
+YL N
Sbjct: 180 NLYLSKN 186
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36 LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
+ + +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKS 116
Query: 82 ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 176
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+T L+ LY+SKN + + + +L +LE S
Sbjct: 177 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 209
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302
+ GL L L L + +NK+T + + L++L+ L L DNQI S + +AG + L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI----SDIVPLAGLTK-LQ 181
Query: 303 TIYLENN 309
+YL N
Sbjct: 182 NLYLSKN 188
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
+ LYL N I+K+E L L LD+ +N+LT++ L++L L LNDNQ
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ--- 89
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI--ILLPSDKFSQIYSRLILMYF 335
L+SI + ++LT I+L NNP + IL S SQ + L+ Y
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ-HPGLVFGYL 139
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
+ S T +D + L + + PT L L N++T L+ + L+ L +L L N
Sbjct: 6 QCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIP 112
+ + P +D L L +L L DN+L IP
Sbjct: 65 QL---TVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 209 KKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTL 264
+ ++LQ N + ++ F+ LE L LS N + K+E + L +L+ L++ N+LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 265 VDD--IQNLSRLEDLWLNDNQIESLES 289
V + LS+L +LWL +N IES+ S
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPS 124
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 65/247 (26%)
Query: 45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
P N L+L N + + + HL +L+ L L +NL+ IE + ++ L L L L
Sbjct: 34 PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK--IE-VGAFNGLPSLNTLEL 90
Query: 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFH 163
DN+L +P F+ LS L+EL++ N +
Sbjct: 91 FDNRLTTVP-TQAFEYLS--------------------KLRELWLRNNPIE--------- 120
Query: 164 DLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG 223
I + NR+ + + ++L LK ++ IS
Sbjct: 121 --SIPSYAFNRVPSL-------------------RRLDLGELKRLEYIS--------EAA 151
Query: 224 FEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLND 281
FE + L L L + + L+ LV L L++S N+L L+ Q L+ L LWL
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 282 NQIESLE 288
Q+ ++E
Sbjct: 212 AQVATIE 218
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 209 KKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTL 264
+ ++LQ N + ++ F+ LE L LS N + K+E + L +L+ L++ N+LT
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 265 VDD--IQNLSRLEDLWLNDNQIESLES 289
V + LS+L +LWL +N IES+ S
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPS 124
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 65/250 (26%)
Query: 42 VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100
P N L+L N + + + HL +L+ L L +NL+ IE + ++ L L
Sbjct: 31 ASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK--IE-VGAFNGLPSLNT 87
Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
L L DN+L +P F+ LS L+EL++ N +
Sbjct: 88 LELFDNRLTTVP-TQAFEYLS--------------------KLRELWLRNNPIES----- 121
Query: 161 HFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTS 220
I + NR+ ++ ++L LK ++ IS
Sbjct: 122 ------IPSYAFNRVP-------------------SLRRLDLGELKRLEYIS-------- 148
Query: 221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLW 278
FE + L L L + + L+ LV L L++S N+L L+ Q L+ L LW
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 279 LNDNQIESLE 288
L Q+ ++E
Sbjct: 209 LMHAQVATIE 218
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 22 IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
I T LDL + L L + F T+LT+L L N+L SL + + + L++L L+L
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 79 NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
N + P +D L L+EL L N+L +PD +F KL+
Sbjct: 86 NQLQSL---PNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLT 124
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 46 TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
T+LT L+L+ N+L SL + + L+ LK+L+L N + P +D L L++L L
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL---PDGVFDKLTQLKDLRLY 132
Query: 105 DNKLMKIPDVSIFKKLS 121
N+L +PD +F +L+
Sbjct: 133 QNQLKSVPD-GVFDRLT 148
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 65 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 124
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
+ GL L L L + +NK+T + + L++L+ L L DNQI +
Sbjct: 125 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI 169
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 36 LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
+ + +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKS 114
Query: 82 ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
+ I I+ L LE L L +NK+ I +S KL + N+I L+
Sbjct: 115 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLAR 174
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
+T L+ LY+SKN + + + +L +LE S
Sbjct: 175 LT-KLQNLYLSKNHISDLRALRGLKNLDVLELFS 207
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 27 TVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
T LD++ H + DS ++P + L+L++ + + + I L+ L + N +D +
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLEVLDVSNNNLDSFS 447
Query: 86 IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS-SHGLSNVTDTLK 144
+ L L+EL + NKL +PD S+F L V +S N++ S G+ + +L+
Sbjct: 448 L-------FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500
Query: 145 ELYVSKN----EVPKMEEIEHF 162
++++ N P+++ + +
Sbjct: 501 KIWLHTNPWDCSCPRIDYLSRW 522
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
I+VV C + ++ + + +N L S F L+ELY+S N + + S L V+
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLP--RLQELYISRNKLKTLPDASLFPVLLVMK 479
Query: 257 VSSNKLTLVDD--IQNLSRLEDLWLNDN 282
+S N+L V D L+ L+ +WL+ N
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
I+VV C + ++ + + +N L S F L+ELY+S N + + S L V+
Sbjct: 448 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLP--RLQELYISRNKLKTLPDASLFPVLLVMK 505
Query: 257 VSSNKLTLVDD--IQNLSRLEDLWLNDN 282
++SN+L V D L+ L+ +WL+ N
Sbjct: 506 IASNQLKSVPDGIFDRLTSLQKIWLHTN 533
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 27 TVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
T LD++ H + DS ++P + L+L++ + + + I L+ L + N +D +
Sbjct: 416 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLEVLDVSNNNLDSFS 473
Query: 86 IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS-SHGLSNVTDTLK 144
+ L L+EL + NKL +PD S+F L V ++ N++ S G+ + +L+
Sbjct: 474 L-------FLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQ 526
Query: 145 ELYVSKN----EVPKMEEIEHF 162
++++ N P+++ + +
Sbjct: 527 KIWLHTNPWDCSCPRIDYLSRW 548
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYL----------------------SHNGISK 242
L + K+ L N+LT +K L L+L HNGIS
Sbjct: 62 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 121
Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
+ GL L L L + +NK+T + + L++L+ L L DNQI +
Sbjct: 122 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 166
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----------------- 81
+ +++ N+T+L L N+LT + +++L NL L L +N +
Sbjct: 56 VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 114
Query: 82 DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
+ I I+ L LE L L +NK+ I +S KL + N+I+ L+ +T
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLT- 173
Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
L+ LY+SKN + + + +L +LE S
Sbjct: 174 KLQNLYLSKNHISDLRALCGLKNLDVLELFS 204
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 44 FPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
P +LTEL L N++T +D+ + L+NL KL L N I +A++ S + L EL
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANT-PHLRELH 246
Query: 103 LRDNKLMKIP 112
L +NKL+K+P
Sbjct: 247 LNNNKLVKVP 256
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 103 LRDNKLMKIPDVSI--FKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE- 158
L++NK+ +I D K L + N+I+ S G L+ LY+SKN++ ++ E
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118
Query: 159 -IEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNL-----CGLKCIKKIS 212
+ +L++ E ++R G N +K + G+K + I
Sbjct: 119 MPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 213 LQSNRLTSM-KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD-- 267
+ +T++ +G +L EL+L N I+K++ L L NL L +S N ++ VD+
Sbjct: 178 IADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
+ N L +L LN+N++ V + + +YL NN
Sbjct: 236 LANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHNN 273
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 44 FPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
P +LTEL L N++T +D+ + L+NL KL L N I +A++ S + L EL
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANT-PHLRELH 246
Query: 103 LRDNKLMKIP 112
L +NKL+K+P
Sbjct: 247 LNNNKLVKVP 256
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 103 LRDNKLMKIPDVSI--FKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE- 158
L++NK+ +I D K L + N+I+ S G L+ LY+SKN++ ++ E
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118
Query: 159 -IEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNL-----CGLKCIKKIS 212
+ +L++ E ++R G N +K + G+K + I
Sbjct: 119 MPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 213 LQSNRLTSM-KGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD-- 267
+ +T++ +G +L EL+L N I+K++ L L NL L +S N ++ VD+
Sbjct: 178 IADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
+ N L +L LN+N++ V + + +YL NN
Sbjct: 236 LANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHNN 273
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 230 LEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIE 285
LE L L N I ++E + L +L+ L++ N LT++ + LS+L +LWL +N IE
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 286 SLES 289
S+ S
Sbjct: 161 SIPS 164
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 48/199 (24%)
Query: 68 LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP-------------DV 114
L++L L L N + + P ++ L+ L EL LR+N + IP D+
Sbjct: 122 LASLNTLELFDNWL---TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 115 SIFKKL-----SVFDVSFNEITSSHGLSNVTDT--------LKELYVSKNEVPKMEEIEH 161
KKL F+ FN + G+ N+ D L+EL +S N P++
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GS 237
Query: 162 FHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSM 221
FH L L+ +L VM RN GL + +++L N L+S+
Sbjct: 238 FHGLSSLK----KLWVMNSQVSLIE-------RNAFD-----GLASLVELNLAHNNLSSL 281
Query: 222 KG--FEECIALEELYLSHN 238
F L EL+L HN
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLE-------SIVEAVAGSRETLTTIY--LENNPQNLQI 315
+ ++ L L++L+L N++++L +E ++ + LT + L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + + +Y+ I FF SH +L F+F
Sbjct: 177 LLL---QENSLYT--IPKGFFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 43 EFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
+ P + T L L+ N L + + + + L +L+L D A + + L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL-----DRAELTKLQVDGTLPVLGTL 82
Query: 102 ILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEV------ 153
L N+L +P + L+V DVSFN +TS G L+ELY+ NE+
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 -----PKMEEI 159
PK+E++
Sbjct: 143 LLTPTPKLEKL 153
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLE-------SIVEAVAGSRETLTTIY--LENNPQNLQI 315
+ ++ L L++L+L N++++L +E ++ + LT + L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + + +Y+ I FF SH +L F+F
Sbjct: 177 LLL---QENSLYT--IPKGFFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 81 IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSN 138
+D A + + L L L L N+L +P + L+V DVSFN +TS G
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 139 VTDTLKELYVSKNEV-----------PKMEEI 159
L+ELY+ NE+ PK+E++
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 40/253 (15%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
T LD + + D+ +E T LT+L T+N +T+LD +S +NL L+ N + + +
Sbjct: 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDV 102
Query: 87 EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
P+++ L L NKL K+ DVS L+ + + N +T
Sbjct: 103 TPLTK------LTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLT--------------- 140
Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGS--NRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCG 204
EI+ H+ Q+ E N+ N+I +++
Sbjct: 141 -----------EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQ 189
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
K + +++ +N +T + + I L L S N +++++ ++ L L D S N LT
Sbjct: 190 NKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTE 247
Query: 265 VDDIQNLSRLEDL 277
+ D+ LS+L L
Sbjct: 248 L-DVSTLSKLTTL 259
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLE-------SIVEAVAGSRETLTTIY--LENNPQNLQI 315
+ ++ L L++L+L N++++L +E ++ + LT + L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N +T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 117
Query: 265 VDDIQNLSRLEDLWLNDNQIESLE-------SIVEAVAGSRETLTTIY--LENNPQNLQI 315
+ ++ L L++L+L N++++L +E ++ + LT + L N +NL
Sbjct: 118 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 177
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 178 LLLQENSLYTIPKG-----FFGSH-LLPFAF 202
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 76 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 136 ELKTLPPGLLTPTPKLEKL 154
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLE-------SIVEAVAGSRETLTTIY--LENNPQNLQI 315
+ ++ L L++L+L N++++L +E ++ + LT + L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 43 EFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
+ P + T L L+ N L + + + + L +L+L D A + + L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL-----DRAELTKLQVDGTLPVLGTL 82
Query: 102 ILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEV------ 153
L N+L +P + L+V DVSFN +TS G L+ELY+ NE+
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 154 -----PKMEEI 159
PK+E++
Sbjct: 143 LLTPTPKLEKL 153
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 45/290 (15%)
Query: 23 DLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
D+S ++L + DL S F T + ELDLTA L L S I +++LKKL L N
Sbjct: 252 DMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANS 311
Query: 81 ID-----DAAIEPISRWDALAG-LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
D +AA P R + G + +L L L K+ + L D+S ++I +S
Sbjct: 312 FDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKL------ENLQKLDLSHSDIEASD 365
Query: 135 G----LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXX 190
L N+ L+ L +S NE +E+ + F + LE L V
Sbjct: 366 CCNLQLKNLRH-LQYLNLSYNEPLGLED-QAFKECPQLEL----LDVAFTHLHVKAPHSP 419
Query: 191 XXGRNRIKVVN-------------LCGLKCIKKISLQSN-----RLTSMKGFEECIALEE 232
+ ++V+N L GL+ ++ ++LQ N ++ + +LE
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 233 LYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
L LS + + + L N++ LD+S N LT D + LS L+ L+LN
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT-GDSMDALSHLKGLYLN 528
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 213 LQSNRLTSMKG--FEECIALEELYLSHN--GISKMEGLSTLVNLHVLDVSSNKLTLVDD- 267
L N++T ++ F+ I L+ELYL N G + +L L VLD+ +N+LT++
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 268 -IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQI 326
L L++L++ N++ L +E + LT + L+ N Q+ +P F ++
Sbjct: 107 VFDRLVHLKELFMCCNKLTELPRGIERLT----HLTHLALDQN----QLKSIPHGAFDRL 158
Query: 327 YSRLILMYFF 336
S L Y F
Sbjct: 159 -SSLTHAYLF 167
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL 108
T +D + R S+ + I +N + L L N I +EP +D+L L+EL L N+L
Sbjct: 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQI--TKLEP-GVFDSLINLKELYLGSNQL 76
Query: 109 MKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDT---LKELYVSKNEVPKMEE-IEH 161
+P V +F +L+V D+ N++T S V D LKEL++ N++ ++ IE
Sbjct: 77 GALP-VGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKELFMCCNKLTELPRGIER 133
Query: 162 FHDLQILEFGSNRLR 176
L L N+L+
Sbjct: 134 LTHLTHLALDQNQLK 148
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 22 IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQ 78
I S T L+L S +L L F T LT+L L+ N++ SL D L+ L L L +
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 79 NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
N + P +D L L+EL L N+L +PD IF +L+
Sbjct: 86 NKLQSL---PNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLT 124
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT---------TIYLENNPQNLQI 315
+ ++ L L++L+L N++++L + E L+ L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N++T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
T L+L QL L + F T L L L N+L SL + HL+ L KL L N +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHG 135
P +D L L+EL L N+L IP F KL+ +S N++ S HG
Sbjct: 122 L---PSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT---------TIYLENNPQNLQI 315
+ ++ L L++L+L N++++L + E L+ L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N++T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT---------TIYLENNPQNLQI 315
+ ++ L L++L+L N++++L + E L+ L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N++T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
T L+L QL L + F T L L L N+L SL + HL+ L KL L N +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 84 AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHG 135
P +D L L+EL L N+L IP F KL+ +S N++ S HG
Sbjct: 122 L---PSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT---------TIYLENNPQNLQI 315
+ ++ L L++L+L N++++L + E L+ L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N++T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVV 200
D L+ ++ +N V KME + D+++L L V+ NR++ +
Sbjct: 423 DDLRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL 478
Query: 201 N--LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVN---LHVL 255
L L+C++ + N L ++ G L+EL L +N + + + LV+ L +L
Sbjct: 479 PPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 256 DVSSNKLTLVDDIQ 269
++ N L + IQ
Sbjct: 539 NLQGNSLCQEEGIQ 552
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
+T LDL+ NRL +L ++ L L+ L D A+E + L L+EL+L +N+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQ-----ASDNALENVDGVANLPRLQELLLCNNR 519
Query: 108 LMKI----PDVSIFKKLSVFDVSFNEITSSHGL 136
L + P VS +L + ++ N + G+
Sbjct: 520 LQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGI 551
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVV 200
D L+ ++ +N V KME + D+++L L V+ NR++ +
Sbjct: 423 DDLRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL 478
Query: 201 N--LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVN---LHVL 255
L L+C++ + N L ++ G L+EL L +N + + + LV+ L +L
Sbjct: 479 PPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 256 DVSSNKLTLVDDIQ 269
++ N L + IQ
Sbjct: 539 NLQGNSLCQEEGIQ 552
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
+T LDL+ NRL +L ++ L L+ L D A+E + L L+EL+L +N+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQ-----ASDNALENVDGVANLPRLQELLLCNNR 519
Query: 108 LMK---IPDVSIFKKLSVFDVSFNEITSSHGL 136
L + I + +L + ++ N + G+
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS-TLVNLHVLDVSSNKLT--L 264
+ +++L LT ++ L L LSHN + + L TL L VLDVS N+LT
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT---------TIYLENNPQNLQI 315
+ ++ L L++L+L N++++L + E L+ L N +NL
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 316 ILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346
+LL + I FF SH +L F+F
Sbjct: 177 LLLQENSLYTIPKG-----FFGSH-LLPFAF 201
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 94 ALAGLEELILRDNKLMKIPDVS-IFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
L L L L N+L +P + L+V DVSFN +TS G L+ELY+ N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 152 EV-----------PKMEEI 159
E+ PK+E++
Sbjct: 135 ELKTLPPGLLTPTPKLEKL 153
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
L LDL+ N+L SL L L L + N + P+ L L+EL L+ N+
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE 135
Query: 108 LMKIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNE---VPK 155
L +P ++ KL ++ N++T GL N + L L + +N +PK
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
P L EL ++ N+L SL + S L KL N + + P +GL+EL +
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELC---KLWAYNNQLTSLPMLP-------SGLQELSV 188
Query: 104 RDNKLMKIPDV-SIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
DN+L +P + S KL ++ N +TS L + LKEL VS N + + +
Sbjct: 189 SDNQLASLPTLPSELYKLWAYN---NRLTS---LPALPSGLKELIVSGNRLTSLPVLP-- 240
Query: 163 HDLQILEFGSNRL 175
+L+ L NRL
Sbjct: 241 SELKELMVSGNRL 253
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 36/224 (16%)
Query: 40 DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99
D+ + T+L L L++NRLT +D +S + +L ++ NL+ AI PI +E
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI-PI-------AVE 208
Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
EL N + + + +L++ + N +T + L N L E+ +S NE+ K+
Sbjct: 209 ELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNELEKIM-Y 265
Query: 160 EHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCG--LKCIKKISLQSNR 217
F +Q LE RL + NR+ +NL G + +K + L N
Sbjct: 266 HPFVKMQRLE----RLYI---------------SNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 218 LTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
L + + + LE LYL HN I ++ LST L L +S N
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHN 349
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
NR+ V+L + + ++ N L+++ IA+EEL SHN I+ + G V L +
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRG-PVNVELTI 230
Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
L + N LT + N L ++ L+ N+ LE I+ + L +Y+ NN
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNN 282
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 29 LDLTSFQLHDLDSVEFPTNLTELD---LTANRLTSLD-SRISHLSNLKKLSLRQNLIDDA 84
LDL+S LH LD F ++L L+ L N + +D + ++ L+KL L QN I
Sbjct: 93 LDLSSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 85 AIEPISRWDALAGLEELILRDNKLMKIP 112
+E I + L L L L NKL K+P
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 223 GFEECIALEELYLSHNGISK-----MEGLSTLVNLHVLDVSSNKLTLVD--DIQNLSRL- 274
FE+ L++LYLS N IS+ ++ + L L +LD+SSNKL + D+Q L
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190
Query: 275 -EDLWLNDNQIE 285
L+L++N +E
Sbjct: 191 KNGLYLHNNPLE 202
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 47 NLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN---LIDDAAIEPISRWDALAGLEELI 102
NL LDL++N L +LD + S L L+ L L N ++D A E +A L++L
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE------DMAQLQKLY 142
Query: 103 LRDNKLMKIP-----DVSIFKKLSVFDVSFNEI 130
L N++ + P D + KL + D+S N++
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 230 LEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQI 284
L L LSHN ++ + E + NL LD+SSN L +D+ +L LE L L +N I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 43/288 (14%)
Query: 15 NPDQAVEIDLSNTV---LDLTSFQLHDLDSVEFPT--NLTELDLTANRLTSL-DSRISHL 68
+PDQ L+ + LDL+ + L+S F T +L L+L N++ + D L
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313
Query: 69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVS 126
NL+ L+L NL+ + S + L + + L+ N + I D +KL D+
Sbjct: 314 DNLQVLNLSYNLLGELYS---SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 127 FNEITSSHGLSNVTD---------TLKELYVSKNEVPKME------EIEHF----HDLQI 167
N +T+ H + ++ D TL ++ ++ N + E +I +F LQI
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 168 LEFGSNRLRVMXXXXXXX---XXXXXXXGRNRIKVV---NLC-----GLKCIKKISLQSN 216
L NR G N +++ LC GL ++ + L N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 217 RLTSMKG--FEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
L S+ F AL L L+ N ++ + NL +LD+S N+L
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTL--VDDIQNLSRLEDLWLNDNQIES 286
+ L+L N I+K+E +L L L+++ N+LT V L++L L L+ NQ
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ--- 99
Query: 287 LESIVEAVAGSRETLTTIYLENNPQNLQI 315
L+SI V + ++LT IYL NNP + +
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNNPWDCEC 128
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
PT L L N++T L+ + +L +L+ ++ P+ +D L L L L
Sbjct: 38 IPTTTQVLHLYINQITKLEPGV--FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 104 RDNKLMKIPDVSIFKKLSVFD 124
N+L IP + VFD
Sbjct: 96 HINQLKSIP-------MGVFD 109
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 27 TVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
T +D++ H + ++ ++P + L+L++ R+ S+ I K L ++D +
Sbjct: 390 TNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIP-----KTL----EILDVSN 440
Query: 86 IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS-SHGLSNVTDTLK 144
L L+EL + NKLM +PD S+ L V +S N++ S G+ + +L+
Sbjct: 441 NNLNLFSLNLPQLKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQ 500
Query: 145 ELYVSKN 151
++++ N
Sbjct: 501 KIWLHTN 507
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 208 IKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLT 263
+K + L +NR+T S + C+ L+ L L+ NGI+ +E S+L +L LD+S N L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDN 282
L+ELY+S N + + S L L VL +S N+L V D L+ L+ +WL+ N
Sbjct: 453 LKELYISRNKLMTLPDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVS----IFKKLSV 122
HL +L+ L L +NL+ + ++ + DA L+ LILR N L + K L+
Sbjct: 332 HLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTN 391
Query: 123 FDVSFNEITSSHGLSNVTDTLKELYVSKNE-------VPKMEEI 159
D+S N S + +K L +S +PK EI
Sbjct: 392 IDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEI 435
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 206 KCIKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNK 261
+ +K + L +NR+T S + C+ L+ L L+ NGI+ +E S+L +L LD+S N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 262 LT 263
L+
Sbjct: 112 LS 113
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 38/225 (16%)
Query: 40 DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99
D+ + T+L L L++NRLT +D +S + +L ++ NL+ AI PI+ +E
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI-PIA-------VE 214
Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
EL N + + + +L++ + N +T + L N L E+ +S NE+ K+ +
Sbjct: 215 ELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNELEKI--M 270
Query: 160 EH-FHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCG--LKCIKKISLQSN 216
H F +Q LE RL + NR+ +NL G + +K + L N
Sbjct: 271 YHPFVKMQRLE----RLYI---------------SNNRLVALNLYGQPIPTLKVLDLSHN 311
Query: 217 RLTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
L + + + LE LYL HN I ++ LST L L +S N
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHN 355
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 56/254 (22%)
Query: 21 EIDLSNTVLDLTSFQLHDLDSVEFPT--NLTELDLTANRLTSLDSR-ISHLSNLKKLSLR 77
EI T+LDL + + +L +F +L L L N+++ + + S L L+KL +
Sbjct: 51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110
Query: 78 QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH- 134
+N + I P + + L EL + DN++ K+P S + ++ ++ N + +S
Sbjct: 111 KNHL--VEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164
Query: 135 ------GL----------------SNVTDTLKELYVSKNEVP--KMEEIEHFHDLQILEF 170
GL ++ +TL EL++ N++ ++E++ + L L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 171 GSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-GFEECIA 229
G N++R+ I+ +L L ++++ L +N+L+ + G +
Sbjct: 225 GHNQIRM-------------------IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265
Query: 230 LEELYLSHNGISKM 243
L+ +YL N I+K+
Sbjct: 266 LQVVYLHTNNITKV 279
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
P + LDL NR+ S+ ++HL L++L++ N + P +D L L+ + L
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV---PDGVFDRLTSLQYIWLH 505
Query: 105 DN 106
DN
Sbjct: 506 DN 507
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 15/95 (15%)
Query: 230 LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE-- 285
++EL LS N +S++ L+ L +L++SSN L D+++LS L L LN+N ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 286 ----SLESIVEA------VAGSR-ETLTTIYLENN 309
S+E++ A V+ SR + IYL NN
Sbjct: 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
LE L L +N I ++G L LD+SSNKL +
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 230 LEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESL 287
L LYL+ N ++++ + L NL VLD+S N+LT L ++ + +L+ + DN + +L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 288 ESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDK 322
G+ L + +E NP Q + + ++K
Sbjct: 309 PWEF----GNLCNLQFLGVEGNPLEKQFLKILTEK 339
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
K F++ + L L HN I ++ L L L N + + D+I + D+ D
Sbjct: 151 KQFQQGVKLXLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHS-----DIIYAD 205
Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNPQNLQ--IILLPSDKFSQIYSRLILMYFFRSH 339
+ S+ E +A T N LQ II++P++K Q ++ + F
Sbjct: 206 HTHTPFASLSEELAARTITCXAPSXTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGL 265
Query: 340 SVLGFSFCQ 348
++ ++ Q
Sbjct: 266 NIFAYTAXQ 274
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 259 SNKLTLV--DDIQNLS---------------------------RLEDLWLNDNQIESLES 289
SNK+ + D++ L RL++L L+ NQ L+S
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ---LKS 214
Query: 290 IVEAVAGSRETLTTIYLENNP 310
+ + + +L I+L NP
Sbjct: 215 VPDGIFDRLTSLQKIWLHTNP 235
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 46 TNLTELDLTANRLTSL---DSRISH-----LSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
TNL LDL++N++ S+ D R+ H +L N I A + I
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------- 201
Query: 98 LEELILRDNKLMKIPDVSIFKKLS 121
L+EL L N+L +PD IF +L+
Sbjct: 202 LKELALDTNQLKSVPD-GIFDRLT 224
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 40 DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99
D E P +LT LD++ N + L S + NL L+ N I S D LE
Sbjct: 271 DLPELPQSLTFLDVSENIFSGL-SELP--PNLYYLNASSNEIR-------SLCDLPPSLE 320
Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
EL + +NKL+++P ++ +L SFN + + + LK+L+V N + + +I
Sbjct: 321 ELNVSNNKLIELP--ALPPRLERLIASFNHLAE---VPELPQNLKQLHVEYNPLREFPDI 375
Query: 160 -EHFHDLQI 167
E DL++
Sbjct: 376 PESVEDLRM 384
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
+ +K + + +N L ++ LE L +S+N + K+ L L ++DV +N L +
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 168
Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
D+ LE + +NQ+E L + + LT IY +NN
Sbjct: 169 PDLP--PSLEFIAAGNNQLEELPEL-----QNLPFLTAIYADNN 205
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 129/292 (44%), Gaps = 47/292 (16%)
Query: 18 QAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLR 77
QA E++L+N L L+S E P +L L + N LT L L +L
Sbjct: 72 QAHELELNN--LGLSSLP-------ELPPHLESLVASCNSLTELPELPQSLKSL------ 116
Query: 78 QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
L+D+ ++ +S L LE L + +N+L K+P++ L + DV N + L
Sbjct: 117 --LVDNNNLKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LP 169
Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI 197
++ +L+ + N++ ++ E+++ L + +N L+ + G N +
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL--PDLPLSLESIVAGNNIL 227
Query: 198 -KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME------------ 244
++ L L + I +N L ++ +LE L + N ++ +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPP--SLEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 245 -----GLSTL-VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
GLS L NL+ L+ SSN++ + D+ LE+L +++N++ L ++
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLP--PSLEELNVSNNKLIELPAL 335
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 23/120 (19%)
Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD 267
++ + + +N+L + + L+ + + +N + K+ L +L + +N+L + +
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP--SLEFIAAGNNQLEELPE 190
Query: 268 IQNLSRLEDLWLNDNQIE-------SLESIVEAVAGSR-----------ETLTTIYLENN 309
+QNL L ++ ++N ++ SLESI VAG+ LTTIY +NN
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESI---VAGNNILEELPELQNLPFLTTIYADNN 247
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 259 SNKLTLV--DDIQNLS---------------------------RLEDLWLNDNQIESLES 289
SNK+ + D++ L RL++L L+ NQ L+S
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ---LKS 215
Query: 290 IVEAVAGSRETLTTIYLENNP 310
+ + + +L I+L NP
Sbjct: 216 VPDGIFDRLTSLQKIWLHTNP 236
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 46 TNLTELDLTANRLTSL---DSRISH-----LSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
TNL LDL++N++ S+ D R+ H +L N I A + I
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------- 202
Query: 98 LEELILRDNKLMKIPDVSIFKKLS 121
L+EL L N+L +PD IF +L+
Sbjct: 203 LKELALDTNQLKSVPD-GIFDRLT 225
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 33 SFQLHDLDSVEFPTNLT----ELDLTANRLTSLDS-RISHLSNLKKLSLRQ---NLIDDA 84
++Q +L+ + P NL LDL+ N L L S L+ L L + I+D
Sbjct: 12 TYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 85 AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT---- 140
A + +L+ L LIL N + + + F LS T+ L N
Sbjct: 72 A------YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILE---FGSNRLR 176
TLKEL V+ N + + E+F +L LE SN+++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 15/95 (15%)
Query: 230 LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE-- 285
++EL LS N +S++ L+ L +L++SSN L D+++LS L L LN+N ++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 286 ----SLESIVEA------VAGSR-ETLTTIYLENN 309
S+E++ A V+ SR + IYL NN
Sbjct: 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
LE L L +N I ++G L LD+SSNKL +
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 100 GLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 259 SNKLTLV--DDIQNLS---------------------------RLEDLWLNDNQIESLES 289
SNK+ + D++ L RL++L L+ NQ L+S
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ---LKS 216
Query: 290 IVEAVAGSRETLTTIYLENNP 310
+ + + +L I+L NP
Sbjct: 217 VPDGIFDRLTSLQKIWLHTNP 237
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 46 TNLTELDLTANRLTSL---DSRISH-----LSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
TNL LDL++N++ S+ D R+ H +L N I A + I
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------- 203
Query: 98 LEELILRDNKLMKIPDVSIFKKLS 121
L+EL L N+L +PD IF +L+
Sbjct: 204 LKELALDTNQLKSVPD-GIFDRLT 226
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 100 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 259 SNKLTLV--DDIQNLS---------------------------RLEDLWLNDNQIESLES 289
SNK+ + D++ L RL++L L+ NQ L+S
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ---LKS 216
Query: 290 IVEAVAGSRETLTTIYLENNP 310
+ + + +L I+L NP
Sbjct: 217 VPDGIFDRLTSLQKIWLHTNP 237
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 46 TNLTELDLTANRLTSL---DSRISH-----LSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
TNL LDL++N++ S+ D R+ H +L N I A + I
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------- 203
Query: 98 LEELILRDNKLMKIPDVSIFKKLS 121
L+EL L N+L +PD IF +L+
Sbjct: 204 LKELALDTNQLKSVPD-GIFDRLT 226
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 33 SFQLHDLDSVEFPTNLT----ELDLTANRLTSLDS-RISHLSNLKKLSLRQ---NLIDDA 84
++Q +L+ + P NL LDL+ N L L S L+ L L + I+D
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 85 AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT---- 140
A + +L+ L LIL N + + + F LS T+ L N
Sbjct: 73 A------YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILE---FGSNRLR 176
TLKEL V+ N + + E+F +L LE SN+++
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 99 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 259 SNKLTLV--DDIQNLS---------------------------RLEDLWLNDNQIESLES 289
SNK+ + D++ L RL++L L+ NQ L+S
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ---LKS 215
Query: 290 IVEAVAGSRETLTTIYLENNP 310
+ + + +L I+L NP
Sbjct: 216 VPDGIFDRLTSLQKIWLHTNP 236
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 46 TNLTELDLTANRLTSL---DSRISH-----LSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
TNL LDL++N++ S+ D R+ H +L N I A + I
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------- 202
Query: 98 LEELILRDNKLMKIPDVSIFKKLS 121
L+EL L N+L +PD IF +L+
Sbjct: 203 LKELALDTNQLKSVPD-GIFDRLT 225
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 33 SFQLHDLDSVEFPTNLT----ELDLTANRLTSLDS-RISHLSNLKKLSLRQ---NLIDDA 84
++Q +L+ + P NL LDL+ N L L S L+ L L + I+D
Sbjct: 12 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 85 AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT---- 140
A + +L+ L LIL N + + + F LS T+ L N
Sbjct: 72 A------YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILE---FGSNRLR 176
TLKEL V+ N + + E+F +L LE SN+++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL-TLVDDIQNLSRLEDLWLNDNQ 283
+ C L+ L +S N IS +S VNL LDVSSN T + + + S L+ L ++ N+
Sbjct: 172 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 231
Query: 284 IES 286
+
Sbjct: 232 LSG 234
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
Query: 27 TVLDLT----SFQLHDLDSVEFPTNLTELDLTANRLTSLDSRIS---HLSNLKKLSLRQN 79
T LDL+ S + L S+ + L L++++N L ++S L++L+ L L N
Sbjct: 100 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSAN 158
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV 139
I A + D L+ L + NK+ DVS L DVS N ++
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 218
Query: 140 TDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL 175
L+ L +S N++ I +L++L SN+
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL-TLVDDIQNLSRLEDLWLNDNQ 283
+ C L+ L +S N IS +S VNL LDVSSN T + + + S L+ L ++ N+
Sbjct: 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234
Query: 284 IES 286
+
Sbjct: 235 LSG 237
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
Query: 27 TVLDLT----SFQLHDLDSVEFPTNLTELDLTANRLTSLDSRIS---HLSNLKKLSLRQN 79
T LDL+ S + L S+ + L L++++N L ++S L++L+ L L N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSAN 161
Query: 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV 139
I A + D L+ L + NK+ DVS L DVS N ++
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 140 TDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL 175
L+ L +S N++ I +L++L SN+
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 27/142 (19%)
Query: 193 GRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS----------- 241
G N + V G +K +++ N+++ C+ LE L +S N S
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224
Query: 242 ---------KMEG-----LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
K+ G +ST L +L++SSN+ L L+ L L +N+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG- 283
Query: 288 ESIVEAVAGSRETLTTIYLENN 309
I + ++G+ +TLT + L N
Sbjct: 284 -EIPDFLSGACDTLTGLDLSGN 304
>pdb|2AQX|A Chain A, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
pdb|2AQX|B Chain B, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
Length = 289
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 297 SRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFS 345
+RE +T + E N I++ D+ I + L + FF+ H V+G S
Sbjct: 179 TREQVTEAFREFTKGNQNILIAYRDRLKAIRATLEISPFFKCHEVIGSS 227
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 131/313 (41%), Gaps = 48/313 (15%)
Query: 11 AEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-------------- 56
A+ + + +S+ V D + +L + + PTN+T L+LT N
Sbjct: 1 ADLGSASSTTKCTVSHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYS 59
Query: 57 RLTSLDSRISHLSN-----------LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
+LTSLD + +S LK L+L+ N + + + + L EL L
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA---FCTNLTELHLMS 116
Query: 106 NKLMKIPDVSIFKK--LSVFDVSFNEITSSHGLSNVTDTLKELYVSKN---EVPKMEEIE 160
N + KI + K+ L D+S N ++S+ + V + + N + K EE++
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 176
Query: 161 HFHD--LQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRL 218
F + L+ LE SN+++ N +++ G +K+ L+
Sbjct: 177 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL----GPSLTEKLCLELAN- 231
Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLED 276
TS++ ++L LS + GL NL +LD+S N L +V D L +LE
Sbjct: 232 TSIRN----LSLSNSQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 286
Query: 277 LWLNDNQIESLES 289
+L N I+ L S
Sbjct: 287 FFLEYNNIQHLFS 299
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 259 SNKL 262
SNK+
Sbjct: 182 SNKI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 259 SNKL 262
SNK+
Sbjct: 158 SNKI 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 204 GLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
GL ++K+ L S++ F L+EL ++HN I E S L NL LD+S
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 259 SNKL 262
SNK+
Sbjct: 158 SNKI 161
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 48/305 (15%)
Query: 19 AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN--------------RLTSLDSR 64
+ +S+ V D + +L + + PTN+T L+LT N +LTSLD
Sbjct: 4 TTKCTVSHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 62
Query: 65 ISHLSN-----------LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD 113
+ +S LK L+L+ N + + + + L EL L N + KI +
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA---FCTNLTELHLMSNSIQKIKN 119
Query: 114 VSIFKK--LSVFDVSFNEITSSHGLSNVTDTLKELYVSKN---EVPKMEEIEHFHD--LQ 166
K+ L D+S N ++S+ + V + + N + K EE++ F + L+
Sbjct: 120 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 179
Query: 167 ILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEE 226
LE SN+++ N +++ G +K+ L+ TS++
Sbjct: 180 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL----GPSLTEKLCLELAN-TSIRN--- 231
Query: 227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQI 284
++L LS + GL NL +LD+S N L +V D L +LE +L N I
Sbjct: 232 -LSLSNSQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Query: 285 ESLES 289
+ L S
Sbjct: 290 QHLFS 294
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 47/281 (16%)
Query: 43 EFPTNLTELDLTAN--------------RLTSLDSRISHLSN-----------LKKLSLR 77
+ PTN+T L+LT N +LTSLD + +S LK L+L+
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 78 QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKK--LSVFDVSFNEITSSHG 135
N + + + + L EL L N + KI + K+ L D+S N ++S+
Sbjct: 82 HNELSQLSDKTFA---FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
Query: 136 LSNVTDTLKELYVSKN---EVPKMEEIEHFHD--LQILEFGSNRLRVMXXXXXXXXXXXX 190
+ V + + N + K EE++ F + L+ LE SN+++
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 191 XXGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLV 250
N +++ G +K+ L+ TS++ ++L LS + GL
Sbjct: 199 GLFLNNVQL----GPSLTEKLCLELAN-TSIRN----LSLSNSQLSTTSNTTFLGLK-WT 248
Query: 251 NLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLES 289
NL +LD+S N L +V D L +LE +L N I+ L S
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
>pdb|1TZD|A Chain A, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
pdb|1TZD|B Chain B, Crystal Structure Of The Catalytic Core Of Inositol 1,4,5-
Trisphosphate 3-Kinase
Length = 275
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 297 SRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFS--FCQDY 350
SRE +T ++ E + +++ ++ QI L + FFR H V+G S F D+
Sbjct: 165 SREQVTRVFEEFXQGDAEVLKRYLNRLQQIRDTLEISDFFRRHEVIGSSLLFVHDH 220
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
NLT L L NR++S+ R L +L +L L QN + A + P + D L L L L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRD-LGRLMTLYLFA 210
Query: 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
N L +P ++ + L ++ N + L++ S +EVP
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLT---ELDLTAN-RLTSLDSRISH-LSNLKKLSLRQNLI 81
T+L L S L +D+ F T L +LDL+ N +L S+D H L L L L
Sbjct: 59 TILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL----- 112
Query: 82 DDAAIEPISR--WDALAGLEELILRDNKLMKIPD 113
D ++ + + LA L+ L L+DN L +PD
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
NLT L L NR++S+ R L +L +L L QN + A + P + D L L L L
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRD-LGRLMTLYLFA 209
Query: 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
N L +P ++ + L ++ N + L++ S +EVP
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 260
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLT---ELDLTAN-RLTSLDSRISH-LSNLKKLSLRQNLI 81
T+L L S L +D+ F T L +LDL+ N +L S+D H L L L L
Sbjct: 58 TILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL----- 111
Query: 82 DDAAIEPISR--WDALAGLEELILRDNKLMKIPD 113
D ++ + + LA L+ L L+DN L +PD
Sbjct: 112 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 145
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 27 TVLDLTSFQLHDLDSVEFPTNLT---ELDLTAN-RLTSLD-SRISHLSNLKKLSLRQNLI 81
T+L L S L +D+ F T LT +LDL+ N +L +D + L +L L L
Sbjct: 58 TILWLHSNALAGIDAAAF-TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL----- 111
Query: 82 DDAAIEPISR--WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF---NEITS--SH 134
D ++ + + LA L+ L L+DN L +PD + F+ L F N I S H
Sbjct: 112 DRCGLQELGPGLFRGLAALQYLYLQDNNLQALPD-NTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDL 165
+ +L L + +N V ++ F DL
Sbjct: 171 AFRGL-HSLDRLLLHQNHVARVHP-HAFRDL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,640
Number of Sequences: 62578
Number of extensions: 318296
Number of successful extensions: 1503
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 342
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)