Query 018662
Match_columns 352
No_of_seqs 204 out of 3465
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 100.0 2.1E-30 4.5E-35 230.0 4.8 288 24-317 78-383 (873)
2 KOG4194 Membrane glycoprotein 100.0 9.9E-31 2.1E-35 232.1 1.9 296 21-326 99-439 (873)
3 PLN00113 leucine-rich repeat r 100.0 7.1E-28 1.5E-32 243.9 20.8 290 19-314 113-419 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.3E-26 5E-31 233.0 20.1 315 17-351 205-585 (968)
5 KOG0444 Cytoskeletal regulator 99.9 8.6E-27 1.9E-31 209.0 -6.7 324 1-348 12-373 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.3E-26 1.2E-30 204.0 -3.1 284 20-310 74-373 (1255)
7 PRK15387 E3 ubiquitin-protein 99.9 2.9E-22 6.3E-27 191.3 18.3 260 25-315 202-461 (788)
8 PLN03210 Resistant to P. syrin 99.9 4.5E-21 9.7E-26 195.5 23.8 282 16-310 581-880 (1153)
9 PRK15387 E3 ubiquitin-protein 99.9 1.5E-20 3.2E-25 179.7 17.3 259 46-351 201-459 (788)
10 KOG0472 Leucine-rich repeat pr 99.8 2E-23 4.3E-28 178.3 -5.1 281 23-312 182-541 (565)
11 PRK15370 E3 ubiquitin-protein 99.8 1.7E-19 3.8E-24 173.3 15.1 249 25-312 179-428 (754)
12 KOG0472 Leucine-rich repeat pr 99.8 1.8E-23 3.8E-28 178.6 -11.2 259 25-288 46-313 (565)
13 KOG0618 Serine/threonine phosp 99.8 1.5E-21 3.2E-26 182.4 -2.0 285 18-309 213-510 (1081)
14 KOG0618 Serine/threonine phosp 99.8 1.4E-21 3E-26 182.6 -2.2 306 18-338 39-440 (1081)
15 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.5E-26 167.2 -4.3 289 27-325 49-369 (498)
16 PLN03210 Resistant to P. syrin 99.8 1.6E-17 3.4E-22 169.7 22.5 276 23-310 610-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.7 9.3E-17 2E-21 154.6 13.3 227 22-263 197-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-17 8.9E-22 145.1 6.7 267 28-311 2-319 (319)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-16 2.7E-21 142.0 4.7 252 15-284 14-319 (319)
20 KOG4237 Extracellular matrix p 99.6 3.5E-18 7.6E-23 146.1 -5.1 129 21-152 64-199 (498)
21 KOG0617 Ras suppressor protein 99.5 2.6E-16 5.7E-21 120.1 -3.8 158 39-200 26-188 (264)
22 KOG1259 Nischarin, modulator o 99.5 1.5E-14 3.2E-19 120.1 1.5 197 114-312 210-412 (490)
23 KOG0617 Ras suppressor protein 99.5 1.4E-15 2.9E-20 116.2 -4.7 151 24-178 33-188 (264)
24 PF14580 LRR_9: Leucine-rich r 99.4 8.9E-14 1.9E-18 110.2 4.1 125 181-305 15-146 (175)
25 PF14580 LRR_9: Leucine-rich r 99.4 2E-13 4.4E-18 108.2 4.3 132 201-345 14-148 (175)
26 KOG0531 Protein phosphatase 1, 99.3 1.3E-13 2.7E-18 126.6 -0.4 265 45-314 48-320 (414)
27 KOG0531 Protein phosphatase 1, 99.2 7.4E-13 1.6E-17 121.6 -0.7 235 46-286 72-319 (414)
28 KOG1259 Nischarin, modulator o 99.2 1.8E-12 4E-17 107.9 1.6 130 161-290 282-417 (490)
29 KOG1909 Ran GTPase-activating 99.2 2E-12 4.2E-17 109.7 0.8 231 46-284 30-310 (382)
30 KOG3207 Beta-tubulin folding c 99.2 1.7E-12 3.7E-17 113.1 -1.0 38 226-263 299-339 (505)
31 KOG3207 Beta-tubulin folding c 99.2 2.6E-12 5.7E-17 111.9 0.0 192 95-286 120-340 (505)
32 COG4886 Leucine-rich repeat (L 99.2 3.5E-11 7.7E-16 110.2 6.2 190 50-243 97-292 (394)
33 COG4886 Leucine-rich repeat (L 99.2 6.7E-11 1.4E-15 108.4 7.7 168 118-285 116-290 (394)
34 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.5E-16 105.1 0.5 240 65-311 26-310 (382)
35 KOG0532 Leucine-rich repeat (L 99.0 2.1E-11 4.5E-16 109.7 -2.9 218 15-238 41-270 (722)
36 KOG4658 Apoptotic ATPase [Sign 98.9 2.1E-09 4.6E-14 105.9 5.9 146 24-172 523-677 (889)
37 KOG1859 Leucine-rich repeat pr 98.9 5E-11 1.1E-15 110.2 -5.7 170 140-313 108-293 (1096)
38 KOG1859 Leucine-rich repeat pr 98.8 4.1E-11 9E-16 110.7 -7.1 127 163-290 164-297 (1096)
39 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.5E-15 103.4 -4.0 169 95-265 74-249 (722)
40 PF13855 LRR_8: Leucine rich r 98.8 5.3E-09 1.2E-13 68.3 3.5 60 46-108 1-61 (61)
41 PF13855 LRR_8: Leucine rich r 98.6 2.2E-08 4.7E-13 65.4 3.0 59 69-130 1-61 (61)
42 KOG2982 Uncharacterized conser 98.6 3.4E-08 7.4E-13 82.6 2.6 205 28-236 49-287 (418)
43 KOG4658 Apoptotic ATPase [Sign 98.6 2.6E-08 5.6E-13 98.4 2.1 205 34-242 511-731 (889)
44 KOG2982 Uncharacterized conser 98.5 1.9E-08 4E-13 84.2 0.8 190 95-286 70-291 (418)
45 KOG4341 F-box protein containi 98.5 3.8E-09 8.2E-14 92.1 -4.7 259 47-310 139-437 (483)
46 COG5238 RNA1 Ran GTPase-activa 98.5 2.3E-08 4.9E-13 82.6 -0.1 238 45-290 29-321 (388)
47 KOG2120 SCF ubiquitin ligase, 98.4 8.1E-09 1.7E-13 86.3 -4.1 168 46-216 185-373 (419)
48 KOG2120 SCF ubiquitin ligase, 98.4 5.6E-09 1.2E-13 87.3 -5.8 171 25-197 186-375 (419)
49 KOG1644 U2-associated snRNP A' 98.4 6.3E-07 1.4E-11 71.0 5.5 124 26-153 21-152 (233)
50 PLN03150 hypothetical protein; 98.4 1.1E-06 2.3E-11 84.9 8.2 103 47-152 419-526 (623)
51 PLN03150 hypothetical protein; 98.4 9.1E-07 2E-11 85.4 7.7 105 208-315 420-531 (623)
52 KOG4341 F-box protein containi 98.4 2.3E-08 5E-13 87.3 -3.3 281 25-308 139-461 (483)
53 KOG1644 U2-associated snRNP A' 98.4 4E-07 8.6E-12 72.1 3.9 119 167-285 23-153 (233)
54 PF12799 LRR_4: Leucine Rich r 98.3 1.4E-06 3.1E-11 52.1 4.0 38 46-83 1-38 (44)
55 COG5238 RNA1 Ran GTPase-activa 98.2 5.4E-07 1.2E-11 74.7 2.3 218 92-315 26-288 (388)
56 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 51.5 3.4 38 251-288 2-40 (44)
57 KOG3665 ZYG-1-like serine/thre 98.1 1.7E-06 3.7E-11 83.6 3.8 143 163-307 122-283 (699)
58 KOG2123 Uncharacterized conser 98.1 2E-07 4.4E-12 77.4 -2.3 87 227-315 18-104 (388)
59 KOG3665 ZYG-1-like serine/thre 98.1 2.4E-06 5.2E-11 82.6 3.8 132 184-315 121-266 (699)
60 PRK15386 type III secretion pr 98.0 4.8E-05 1E-09 68.2 9.8 134 23-173 51-187 (426)
61 KOG2739 Leucine-rich acidic nu 97.9 8.2E-06 1.8E-10 67.5 2.8 84 25-110 44-130 (260)
62 KOG4579 Leucine-rich repeat (L 97.8 1.4E-06 3.1E-11 64.8 -2.1 84 46-133 53-138 (177)
63 KOG2123 Uncharacterized conser 97.8 8.1E-07 1.7E-11 73.9 -4.7 100 206-305 19-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.7 2.1E-05 4.5E-10 65.1 2.5 101 206-306 43-150 (260)
65 KOG4579 Leucine-rich repeat (L 97.7 3.6E-06 7.7E-11 62.7 -2.0 106 47-156 28-138 (177)
66 PRK15386 type III secretion pr 97.5 0.0006 1.3E-08 61.4 8.7 131 140-282 51-187 (426)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0081 1.8E-07 45.3 7.7 77 201-281 30-112 (129)
68 PF13306 LRR_5: Leucine rich r 96.6 0.0075 1.6E-07 45.5 6.7 31 47-78 13-44 (129)
69 KOG1947 Leucine rich repeat pr 96.5 0.00033 7.2E-09 65.9 -2.3 227 66-310 185-438 (482)
70 PF00560 LRR_1: Leucine Rich R 95.9 0.0036 7.8E-08 31.1 0.8 19 48-66 2-20 (22)
71 PF13504 LRR_7: Leucine rich r 94.7 0.019 4.2E-07 26.4 1.2 14 273-286 2-15 (17)
72 KOG4308 LRR-containing protein 93.7 0.0011 2.3E-08 61.8 -8.2 168 119-286 88-304 (478)
73 KOG1947 Leucine rich repeat pr 93.5 0.049 1.1E-06 51.2 2.5 127 183-310 186-332 (482)
74 KOG3763 mRNA export factor TAP 91.6 0.37 8E-06 44.9 5.3 112 225-336 215-350 (585)
75 KOG0473 Leucine-rich repeat pr 91.5 0.0044 9.5E-08 50.8 -6.2 84 44-131 40-124 (326)
76 KOG4308 LRR-containing protein 91.5 0.0022 4.8E-08 59.7 -9.2 186 98-283 89-329 (478)
77 smart00370 LRR Leucine-rich re 90.9 0.15 3.3E-06 26.2 1.3 15 273-287 3-17 (26)
78 smart00369 LRR_TYP Leucine-ric 90.9 0.15 3.3E-06 26.2 1.3 15 273-287 3-17 (26)
79 KOG4242 Predicted myosin-I-bin 90.2 3.3 7E-05 38.2 9.7 260 25-285 166-481 (553)
80 KOG3864 Uncharacterized conser 90.1 0.067 1.5E-06 43.1 -0.7 78 230-310 103-187 (221)
81 KOG3864 Uncharacterized conser 88.3 0.16 3.5E-06 41.0 0.3 64 251-319 102-168 (221)
82 PF13516 LRR_6: Leucine Rich r 86.5 0.57 1.2E-05 23.4 1.7 15 272-286 2-16 (24)
83 KOG0473 Leucine-rich repeat pr 85.7 0.023 5E-07 46.7 -5.8 85 65-153 38-123 (326)
84 TIGR00864 PCC polycystin catio 85.2 0.62 1.4E-05 51.7 2.7 36 278-316 1-36 (2740)
85 smart00364 LRR_BAC Leucine-ric 85.0 0.63 1.4E-05 24.0 1.3 18 46-63 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 84.0 0.76 1.7E-05 23.7 1.4 17 272-288 2-18 (26)
87 smart00368 LRR_RI Leucine rich 81.5 1.8 3.9E-05 22.7 2.3 15 272-286 2-16 (28)
88 KOG3763 mRNA export factor TAP 74.5 2 4.2E-05 40.3 1.9 66 247-315 215-286 (585)
89 KOG4242 Predicted myosin-I-bin 71.8 14 0.00031 34.2 6.5 15 70-84 166-180 (553)
90 smart00367 LRR_CC Leucine-rich 67.3 4 8.8E-05 20.8 1.4 13 298-310 1-13 (26)
91 PF05725 FNIP: FNIP Repeat; I 58.2 19 0.00042 21.1 3.3 33 22-54 10-42 (44)
92 TIGR00864 PCC polycystin catio 25.9 47 0.001 38.1 2.3 30 30-59 1-32 (2740)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-30 Score=230.05 Aligned_cols=288 Identities=30% Similarity=0.396 Sum_probs=183.3
Q ss_pred ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662 24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 101 (352)
+..+.|++++|++..+... .-+++|+++++..|.++.||.......+|+.|+|.+|.|+.+.. ..+..++-|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHHHhHhhhhhh
Confidence 4456677777777766543 33577777777777777777654455567777777777766533 345556777788
Q ss_pred EccCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC
Q 018662 102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR 176 (352)
Q Consensus 102 ~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~ 176 (352)
|++.|.|..++. +..-.++++|++++|.++.+.... ..+.+|..|.+++|.++.+ ..|.++++|+.|++..|+++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 888877777664 555567888888888777665433 2356777788888877773 34666788888888887776
Q ss_pred Ccc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCC
Q 018662 177 VME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLS 247 (352)
Q Consensus 177 ~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~ 247 (352)
... .+.++++|+.+.+..|.+... .|..+.++++|++..|++..+ .++.++..|+.|++++|.|..+ ++++
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 553 356777777777777766655 555666777777777766655 2455666666667776666653 4556
Q ss_pred CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccc
Q 018662 248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIIL 317 (352)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 317 (352)
..++|+.|++++|.++.+ +.+..++.|++|++++|.|+.+. ...+..+++|++|||+.|.+..-|.+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~---e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA---EGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH---hhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 666666666666666655 34455555555555555555333 22334445555555555554444433
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=9.9e-31 Score=232.07 Aligned_cols=296 Identities=27% Similarity=0.373 Sum_probs=179.9
Q ss_pred cccccCceeecCCCCCcCCCCCCCC-CcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.-.++|+.+.+.+|.++.+|..... .+++.|++.+|.|.++... ++-++.|+.|+|+.|.+..+ ..+.|..-.++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i---~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI---PKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc---cCCCCCCCCCc
Confidence 4446777777777777777765544 3477777777766665443 55566666666666665554 23344444556
Q ss_pred cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCccc-ccCcceEEccCCcCCCc-------------------
Q 018662 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM------------------- 156 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~------------------- 156 (352)
++|++++|.|+.+.. |..+.+|..|.+++|+++.++...+. +++|+.|++..|.+.-.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 666666665554433 44455555555555555555544333 55555555555544432
Q ss_pred -------ccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--
Q 018662 157 -------EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-- 222 (352)
Q Consensus 157 -------~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~-- 222 (352)
..|..+.++++|+++.|++... .++.+++.|+.|+++.|.+..+ ....+++|+.|+++.|+++..+
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 1244445555555555554422 3345555555555555555554 2333455555666655555553
Q ss_pred CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHHHHHHHh
Q 018662 223 GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVA 295 (352)
Q Consensus 223 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 295 (352)
.+..+..|+.|+++.|.+..+. .|.++++|+.||+++|.++.. ..+..+++|+.|.+.||+|+.++ ...+
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAf 412 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAF 412 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhh
Confidence 3445555556666666555543 356778888888888887543 34667888888999999888766 5567
Q ss_pred ccccCccEeeccCCCccccccccCCccHHHH
Q 018662 296 GSRETLTTIYLENNPQNLQIILLPSDKFSQI 326 (352)
Q Consensus 296 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 326 (352)
..+++|.+|||.+| .|..+..+.|..+
T Consensus 413 sgl~~LE~LdL~~N----aiaSIq~nAFe~m 439 (873)
T KOG4194|consen 413 SGLEALEHLDLGDN----AIASIQPNAFEPM 439 (873)
T ss_pred ccCcccceecCCCC----cceeecccccccc
Confidence 78888999999998 6677777788765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=7.1e-28 Score=243.90 Aligned_cols=290 Identities=24% Similarity=0.268 Sum_probs=177.6
Q ss_pred cccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662 19 AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 19 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
++....+|++|++++|++++..+...+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~ 189 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI---PNSLTNLTS 189 (968)
T ss_pred HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC---ChhhhhCcC
Confidence 33344566666666666655444445566777777777766 55666777777777777777766542 234556777
Q ss_pred CcEEEccCCCCCC-CCC-CccccCCcEEEccCCCcccc-cCCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCC
Q 018662 98 LEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGS 172 (352)
Q Consensus 98 L~~L~l~~~~l~~-l~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~ 172 (352)
|++|++++|.+.. +|. +..+++|++|++++|.+.+. +.....+.+|++|++++|.+.. +..++.+++|+.|++.+
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 7777777776653 444 66677777777777776643 3333446677777777776654 34566777777777777
Q ss_pred CccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC
Q 018662 173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME 244 (352)
Q Consensus 173 ~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~ 244 (352)
|.+. .+..+..+++|+.|++++|.+... .+..+++|+.|++++|.+... | .+..+++|+.|++++|.+.+ ++
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 7663 334566677777777777766543 455667777777777766544 2 35566777777777776654 22
Q ss_pred -CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662 245 -GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ 314 (352)
Q Consensus 245 -~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 314 (352)
.+..+++|+.|++++|++.+. +.+..+++|+.+++++|.+... ....+..+++|+.|++++|.+.+.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE---IPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc---CCHHHhCCCCCCEEECcCCEeeeE
Confidence 355566677777777666543 3344445555555555555421 112234455566666666554443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.3e-26 Score=232.95 Aligned_cols=315 Identities=24% Similarity=0.245 Sum_probs=171.3
Q ss_pred cccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccc
Q 018662 17 DQAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD 93 (352)
Q Consensus 17 ~~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 93 (352)
+..+..+.+|++|++++|.+.+..+ +..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+ ..+.
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~ 281 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP---PSIF 281 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc---hhHh
Confidence 3444556778888888887775322 344577778888777776 566667777777777777777665422 3445
Q ss_pred cCCCCcEEEccCCCCCC-CCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC--cccccCCCCCcEE
Q 018662 94 ALAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQIL 168 (352)
Q Consensus 94 ~l~~L~~L~l~~~~l~~-l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L 168 (352)
.+++|++|++++|.+.. +|. +..+++|+.|++++|.+.+..+ ....+++|+.|++++|.+.. +..++.+++|+.+
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 56677777777766653 333 5556666666666666554322 22335556666666555543 2234444555555
Q ss_pred EcCCCccC--------------------------CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCC
Q 018662 169 EFGSNRLR--------------------------VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLT 219 (352)
Q Consensus 169 ~l~~~~l~--------------------------~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~ 219 (352)
++++|.+. .+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 55444432 112234445555555555544432 3334455555555555444
Q ss_pred CCc--CccccccCc-----------------------EEECCCCCCCCC-C-CCCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662 220 SMK--GFEECIALE-----------------------ELYLSHNGISKM-E-GLSTLVNLHVLDVSSNKLTLV--DDIQN 270 (352)
Q Consensus 220 ~~~--~~~~~~~L~-----------------------~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~--~~~~~ 270 (352)
+.. .+..+++|+ .|++++|++.+. + .+..+++|+.|++++|.+.+. +.+..
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 331 122334444 444444444321 1 234445555566666555443 34455
Q ss_pred CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY 350 (352)
Q Consensus 271 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
+++|+.|++++|.++... ...+..+++|+.|++++|.+.+.+ |.. +.. ...+..+++++|.+.
T Consensus 522 l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~---p~~-l~~----------l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQNQLSGEI---PKN-LGN----------VESLVQVNISHNHLH 584 (968)
T ss_pred ccCCCEEECCCCcccccC---ChhHhCcccCCEEECCCCcccccC---Chh-Hhc----------CcccCEEeccCCcce
Confidence 566666666666665321 223445566666666666655554 321 221 345777777777765
Q ss_pred C
Q 018662 351 G 351 (352)
Q Consensus 351 ~ 351 (352)
|
T Consensus 585 ~ 585 (968)
T PLN00113 585 G 585 (968)
T ss_pred e
Confidence 4
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=8.6e-27 Score=209.01 Aligned_cols=324 Identities=23% Similarity=0.328 Sum_probs=162.8
Q ss_pred CCCCCCCCCCccCCCccccccccccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCC
Q 018662 1 MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN 79 (352)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 79 (352)
||+.+.+|++.. ++.-++.+.+++.|.+...++..+|. +..+.+|+.|.+++|++.++-..++.+|.|+.+.+..|
T Consensus 12 vDfsgNDFsg~~---FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDR---FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCc---CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 466777776332 23333444556666666666655543 23344455555555554444444444444444444444
Q ss_pred ccCccccccccccccCCCCcEEEccCCCCCCCCC-Cc------------------------cccCCcEEEccCCCccccc
Q 018662 80 LIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VS------------------------IFKKLSVFDVSFNEITSSH 134 (352)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~------------------------~~~~L~~L~l~~~~~~~~~ 134 (352)
.++.... ++.+..+..|..||+++|++...|. +. ++.-|-.||+++|++..++
T Consensus 89 ~LKnsGi--P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 89 NLKNSGI--PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccCCC--CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 4443321 1233344444444444444444443 33 3444444444444444444
Q ss_pred CCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCCcc---CCcccccCCCCCcEEEccCCcccee--cCCCCCC
Q 018662 135 GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL---RVMENLQNLTNLQELWLGRNRIKVV--NLCGLKC 207 (352)
Q Consensus 135 ~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~l---~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~ 207 (352)
+....+..|++|.+++|.+.. +..+..+.+|+.|.+++.+- ..+.++..+.+|+.++++.|.+..+ .+..+++
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~ 246 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRN 246 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhh
Confidence 444444444444444444332 11233333444444444321 1233344445555555555555544 3444555
Q ss_pred CCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcC--CCc-ccccCCCCCCeEEcCCC
Q 018662 208 IKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKL--TLV-DDIQNLSRLEDLWLNDN 282 (352)
Q Consensus 208 L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l--~~~-~~~~~~~~L~~L~l~~n 282 (352)
|+.|.+++|.++... ......+|++|+++.|+++.+|. +.+++.|+.|.+.+|++ .++ +.++.+..|+.+..++|
T Consensus 247 LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred hheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 555555555555442 23344555555555555555542 44555566666666654 233 45555666666666666
Q ss_pred CCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662 283 QIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ 348 (352)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (352)
.+..+|+. +..|.+|+.|.|+.| .+..+|..+. +...++++|+..++
T Consensus 327 ~LElVPEg----lcRC~kL~kL~L~~N----rLiTLPeaIH-----------lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 327 KLELVPEG----LCRCVKLQKLKLDHN----RLITLPEAIH-----------LLPDLKVLDLRENP 373 (1255)
T ss_pred ccccCchh----hhhhHHHHHhccccc----ceeechhhhh-----------hcCCcceeeccCCc
Confidence 66655533 345788888888888 5556665422 24556677766654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.3e-26 Score=203.96 Aligned_cols=284 Identities=24% Similarity=0.320 Sum_probs=234.6
Q ss_pred ccccccCceeecCCCCCc--CCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662 20 VEIDLSNTVLDLTSFQLH--DLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (352)
Q Consensus 20 ~~~~~~l~~L~l~~~~l~--~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 96 (352)
+...+.||.++++.|+++ ++|. +..+..|+.|++++|++.++|..+..-+++-.|++++|.|..+ +-..|.+++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI---Pn~lfinLt 150 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI---PNSLFINLT 150 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC---CchHHHhhH
Confidence 344466677777777665 3443 3446788999999999999988888888999999999988875 334567889
Q ss_pred CCcEEEccCCCCCCCCC-CccccCCcEEEccCCCccccc-CCcccccCcceEEccCCcCCC---cccccCCCCCcEEEcC
Q 018662 97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFG 171 (352)
Q Consensus 97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~ 171 (352)
.|-+||+++|.+..+|+ +..+..|++|++++|++.... ...-.+.+|+.|++++.+-+- +.++..+.+|..++++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 99999999999999998 888999999999999887643 122236788899998875433 5677888999999999
Q ss_pred CCccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCC--CCCC-
Q 018662 172 SNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGI--SKME- 244 (352)
Q Consensus 172 ~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l--~~~~- 244 (352)
.|.+. .+..+..+++|+.|++++|.++.. ......+|++|.++.|+++..| .+..+++|+.|++..|.+ .++|
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 99986 456688999999999999999988 5556789999999999999997 577899999999999975 4676
Q ss_pred CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 245 GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 245 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+++++..|+.+..++|++.-+ +.+..|.+|+.|.++.|++..+|+.+- -++.|..||++.||
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH----lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH----LLPDLKVLDLRENP 373 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh----hcCCcceeeccCCc
Confidence 588999999999999999877 789999999999999999998886543 35899999999999
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=2.9e-22 Score=191.31 Aligned_cols=260 Identities=28% Similarity=0.296 Sum_probs=209.8
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
.-..|+++++.++.+|. .++++|+.|++.+|.++.+|. ..++|++|++++|.++... . ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-----~--lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----V--LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-----C--cccccceeecc
Confidence 46789999999999886 567899999999999999885 3689999999999998741 1 24689999999
Q ss_pred CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184 (352)
Q Consensus 105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 184 (352)
+|.+..+|. ...+|+.|++++|++..++. ..++|+.|++++|.+..++.+ ...|+.|++.+|.+..++.+.
T Consensus 271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp-- 341 (788)
T PRK15387 271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP-- 341 (788)
T ss_pred CCchhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccccc--
Confidence 999998875 34678999999999987764 246899999999988875432 346888999999887655432
Q ss_pred CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662 185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264 (352)
Q Consensus 185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 264 (352)
..|+.|++++|.+..... ..++|+.|.+++|.+..+|.. ..+|+.|++++|.++.++.. +++|+.|++++|+++.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 342 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS 416 (788)
T ss_pred cccceEecCCCccCCCCC-CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCC
Confidence 479999999999887532 346889999999999888753 36799999999999988754 4689999999999988
Q ss_pred cccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
++.+ +.+|+.|++++|.|+.+|.. +..+++|+.|++++|++.+..
T Consensus 417 IP~l--~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 417 LPML--PSGLLSLSVYRNQLTRLPES----LIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCcc--hhhhhhhhhccCcccccChH----HhhccCCCeEECCCCCCCchH
Confidence 7543 35789999999999988753 345789999999999988765
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.5e-21 Score=195.50 Aligned_cols=282 Identities=20% Similarity=0.233 Sum_probs=187.4
Q ss_pred ccccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 95 (352)
++++...+..|+.|++.++.++.+|....+.+|++|++.++++..++..+..+++|++|+++++.... .++.+..+
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~----~ip~ls~l 656 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK----EIPDLSMA 656 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC----cCCccccC
Confidence 34455556778888888888888887666788999999999988888888889999999998865333 22346678
Q ss_pred CCCcEEEccCC-CCCCCCC-CccccCCcEEEccCCC-cccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcC
Q 018662 96 AGLEELILRDN-KLMKIPD-VSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFG 171 (352)
Q Consensus 96 ~~L~~L~l~~~-~l~~l~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~ 171 (352)
++|++|++.+| .+..+|. +..+++|+.|++++|. +..++. ...+.+|+.|++++|.... ++ ....+|+.|++.
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~ 733 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLD 733 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCCCCccccc--cccCCcCeeecC
Confidence 88999999887 4667776 7788899999998875 334433 2256788888888875322 22 124578888888
Q ss_pred CCccCCcccccCCCCCcEEEccCCcccee----------cCCCCCCCCEEEcCCCc-CCCCc-CccccccCcEEECCCC-
Q 018662 172 SNRLRVMENLQNLTNLQELWLGRNRIKVV----------NLCGLKCIKKISLQSNR-LTSMK-GFEECIALEELYLSHN- 238 (352)
Q Consensus 172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~----------~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~n- 238 (352)
++.+..++....+++|+.|.+.++..... ....+++|+.|++++|. +...| .+..+++|+.|++++|
T Consensus 734 ~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 734 ETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred CCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 88776554444556666666655321111 12234567777777763 33344 4566777777777765
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCc-CCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 239 GISKMEGLSTLVNLHVLDVSSNK-LTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 239 ~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
.+..+|....+++|+.|++++|. +..++.+ .++|+.|++++|.|+.+|.. ...+++|+.|++++|+
T Consensus 814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~s----i~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 814 NLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWW----IEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHH----HhcCCCCCEEECCCCC
Confidence 45555544456677777777654 2222221 34677777777777766532 3445777777777765
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.5e-20 Score=179.74 Aligned_cols=259 Identities=21% Similarity=0.278 Sum_probs=205.2
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEc
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l 125 (352)
..-..|+++++.++++|..+. ++|+.|++++|.++... . .+++|++|++++|+++.+|. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP-----~--lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP-----A--LPPELRTLEVSGNQLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCC-----C--CCCCCcEEEecCCccCcccC--cccccceeec
Confidence 456789999999999998775 48999999999998741 1 25889999999999999885 3578999999
Q ss_pred cCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCC
Q 018662 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205 (352)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 205 (352)
++|.+..++.. ..+|+.|++++|.+..++. ..++|+.|++++|.+..++.+ ...|+.|++++|.+.... ...
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP-~lp 341 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP-TLP 341 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCccccccc--cccccceeECCCCccccCCCC--cccccccccccCcccccc-ccc
Confidence 99998876652 3678999999999887543 347899999999998765543 246888999999887653 123
Q ss_pred CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCc
Q 018662 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285 (352)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~ 285 (352)
.+|+.|++++|.++.+|.+ .++|+.|++++|.+..++.. +.+|+.|++++|++++++.. .++|+.|++++|.++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLT 415 (788)
T ss_pred cccceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCC
Confidence 5899999999999988754 46899999999999988754 36799999999999987543 368999999999999
Q ss_pred chHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeeccC
Q 018662 286 SLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYG 351 (352)
Q Consensus 286 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
.+|.. ..+|+.|++++|. +..+|.. |.+ +.++.++++++|.+.|
T Consensus 416 sIP~l-------~~~L~~L~Ls~Nq----Lt~LP~s-l~~----------L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 416 SLPML-------PSGLLSLSVYRNQ----LTRLPES-LIH----------LSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCcc-------hhhhhhhhhccCc----ccccChH-Hhh----------ccCCCeEECCCCCCCc
Confidence 88743 2468899999995 4466754 332 4677778888877654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2e-23 Score=178.27 Aligned_cols=281 Identities=26% Similarity=0.328 Sum_probs=174.2
Q ss_pred cccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662 23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 101 (352)
++.|+++|+-.|.++.+|+ ++.+.+|..|++++|++..+| .|.+|..|+++.++.|.+... +.+.+..++++.+|
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~l---pae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEML---PAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhh---HHHHhcccccceee
Confidence 5555666666666665543 344555555555555555555 455555555555555555443 22233345555555
Q ss_pred EccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc------------------------
Q 018662 102 ILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM------------------------ 156 (352)
Q Consensus 102 ~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------------ 156 (352)
|++.|+++.+|+ +..+++|..||+++|.+++.+...+.+ +|+.|.+.+|.+.++
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 555555555554 444555555555555555555444444 555555555433221
Q ss_pred -------------------ccccCCCCCcEEEcCCCccCC-cccccCCC---CCcEEEccCCc-----------------
Q 018662 157 -------------------EEIEHFHDLQILEFGSNRLRV-MENLQNLT---NLQELWLGRNR----------------- 196 (352)
Q Consensus 157 -------------------~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~---~L~~L~l~~~~----------------- 196 (352)
+......+.+.+++++-.++. ++.+.... -...++++.|.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 011223345566666555542 22222211 13444554443
Q ss_pred -------ccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcCCCc
Q 018662 197 -------IKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV 265 (352)
Q Consensus 197 -------l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 265 (352)
+... .++.+++|+.|++++|.+.+.| .++.+..|+.++++.|++..+|. ...+..++.+..++|++..+
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence 2222 4566788999999999988887 56677779999999998888774 34455677777788999887
Q ss_pred --ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662 266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
+.+.++.+|..||+.+|.+..+|++ .++|.+|++|++.|||+-
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq~IPp~----LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQQIPPI----LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchhhCChh----hccccceeEEEecCCccC
Confidence 4588999999999999999988864 577899999999999875
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.7e-19 Score=173.25 Aligned_cols=249 Identities=23% Similarity=0.260 Sum_probs=161.7
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
+...|++++..++.+|. ..+++++.|++++|+++++|..+. ++|++|++++|.++.. +..+ .+.|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsL----P~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-CIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSI----PATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccC----Chhh--hccccEEECc
Confidence 46788899888888875 457789999999999988887653 5899999999888763 1122 3468889998
Q ss_pred CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184 (352)
Q Consensus 105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 184 (352)
+|.+..+|.. ...+|+.|++++|.+..++... ..+|+.|++++|.+..++.. ..++|+.|++.+|
T Consensus 250 ~N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N----------- 314 (754)
T PRK15370 250 INRITELPER-LPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSN----------- 314 (754)
T ss_pred CCccCcCChh-HhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCccc-chhhHHHHHhcCC-----------
Confidence 8888887751 1247888888888877655322 24677777777766543210 0123444444444
Q ss_pred CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662 185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264 (352)
Q Consensus 185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 264 (352)
.+........++|+.|++++|.++.+|.. -+++|+.|++++|++..++.. ..++|+.|++++|.++.
T Consensus 315 -----------~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 315 -----------SLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTN 381 (754)
T ss_pred -----------ccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChh-hcCCcCEEECCCCcCCC
Confidence 44333222234566666666666655421 135677777777777665531 13567777777777766
Q ss_pred cc-cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662 265 VD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 265 ~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
++ .+. ..|+.|++++|.++.+|+.+......++.+..|++.+||+.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 52 221 35777777777777777665666666677777778777654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.8e-23 Score=178.62 Aligned_cols=259 Identities=25% Similarity=0.330 Sum_probs=181.1
Q ss_pred cCceeecCCCCCcCCC-CCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
.+..+.+++|.++.+. .+..+..+++|.+.+|++..+|+++..+..++.+++++|.+.. .++..+.+..|+.+++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhc
Confidence 4566777777776653 3455667777777777777777777777777777777777766 3445566777777777
Q ss_pred cCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCccC-Cccc
Q 018662 104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR-VMEN 180 (352)
Q Consensus 104 ~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~ 180 (352)
++|.+..+++ +..+..+..++..+|++...++....+.++..+++.+|.+.. ++..-+++.|++++...|.++ .++.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~ 201 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE 201 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh
Confidence 7777777665 666777777777777777777766667777777777777666 333334777777777777665 4456
Q ss_pred ccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCCCC-CCCCCCCcEEE
Q 018662 181 LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG-LSTLVNLHVLD 256 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~ 256 (352)
++.+.+|+.|++..|++... .|.+|+.|..+.++.|++...|. ..+++.+..|+++.|+++.+|. +..+++|.+||
T Consensus 202 lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 77777777777777777766 67777777777777777766652 3466777777777777777653 55566677777
Q ss_pred cCCCcCCCc-ccccCCCCCCeEEcCCCCCcchH
Q 018662 257 VSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLE 288 (352)
Q Consensus 257 l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~ 288 (352)
+++|.+++. ..++++ +|+.|-+.||++..+-
T Consensus 282 lSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 282 LSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred ccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence 777777777 456666 7777777777766543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-21 Score=182.42 Aligned_cols=285 Identities=26% Similarity=0.282 Sum_probs=226.7
Q ss_pred ccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
......++++.|+.+.|.++.....+.+.++++++++++.++.+|..+..+.+|+.+.+.+|.++. .+..+...+.
T Consensus 213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~ 288 (1081)
T KOG0618|consen 213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITS 288 (1081)
T ss_pred eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhh
Confidence 344455778888888888887777788899999999999999999779999999999999999966 3445667889
Q ss_pred CcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCccc--ccCcceEEccCCcCCCccccc--CCCCCcEEEcCC
Q 018662 98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV--TDTLKELYVSKNEVPKMEEIE--HFHDLQILEFGS 172 (352)
Q Consensus 98 L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 172 (352)
|+.|.+..|.+..+|+ ....++|++|++..|.+..++..... ...++.++.+.+.+......+ ..+.|+.|.+.+
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 9999999999999998 55599999999999999988764433 234777777777776654433 356688899999
Q ss_pred CccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCCC
Q 018662 173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGL 246 (352)
Q Consensus 173 ~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 246 (352)
|.+. .++.+.+.++|+.|+++.|.+..+ .+..++.|+.|.+++|.++.+| .+..++.|++|....|++..+|.+
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 9885 456788889999999999977765 6677888999999999999886 467888999999999999998888
Q ss_pred CCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCC
Q 018662 247 STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (352)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n 309 (352)
..++.|+.+|++.|.++.. +.....++|++||++||.-..++ ...+..+.++...++.-+
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d---~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD---HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc---hhhhHHhhhhhheecccC
Confidence 8889999999999998766 22222278999999999855443 334555666666666655
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-21 Score=182.60 Aligned_cols=306 Identities=23% Similarity=0.274 Sum_probs=180.1
Q ss_pred ccccccccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 96 (352)
.+++..-.|+.||++++.+..+|. +....+|+.|+++.|-+.++|....++++|+++.|.+|.... .+.++..+.
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~----lP~~~~~lk 114 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS----LPASISELK 114 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc----CchhHHhhh
Confidence 333444458999999999999874 455688899999999888888888888889999998887766 455677788
Q ss_pred CCcEEEccCCCCCCCCC-CccccCCcEEEccCC-------------------CcccccCCcccccCcce-EEccCCcCC-
Q 018662 97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFN-------------------EITSSHGLSNVTDTLKE-LYVSKNEVP- 154 (352)
Q Consensus 97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~L~~-L~l~~~~~~- 154 (352)
+|++|+++.|.+..+|. +..+..+..+..++| .+..... .....+++ +++.+|.+.
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~--~~i~~l~~~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL--IDIYNLTHQLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh--cchhhhheeeecccchhhh
Confidence 88888888888777664 333333333333322 2111000 00111122 333333332
Q ss_pred ----------------------------------------CcccccCCCCCcEEEcCCCccC-CcccccCCCCCcEEEcc
Q 018662 155 ----------------------------------------KMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLG 193 (352)
Q Consensus 155 ----------------------------------------~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~ 193 (352)
.........++++++++.++++ .+.++..|.+|+.++..
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 1111122345666666666654 33456667777777776
Q ss_pred CCcccee--cCCCCCCCCEEEcCCCcCCCCcC-ccccccCcEEECCCCCCCCCCC-------------------------
Q 018662 194 RNRIKVV--NLCGLKCIKKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEG------------------------- 245 (352)
Q Consensus 194 ~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~------------------------- 245 (352)
.|.+... .+...++|+++.+..|.+..+|. ..+...|++|++..|++..++.
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 6665444 33333444444444444444432 3335566666666666554321
Q ss_pred C--CCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCc
Q 018662 246 L--STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD 321 (352)
Q Consensus 246 ~--~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 321 (352)
. ...+.|+.|.+.+|.+++- +.+.++.+|+.|++++|++..+| +....++..|++|+|+|| .+..+|..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp---as~~~kle~LeeL~LSGN----kL~~Lp~t 425 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP---ASKLRKLEELEELNLSGN----KLTTLPDT 425 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC---HHHHhchHHhHHHhcccc----hhhhhhHH
Confidence 1 1223456666667766654 56666777777777777777665 344556677777777777 45555632
Q ss_pred cHHHHHHHHHHhhhhcc
Q 018662 322 KFSQIYSRLILMYFFRS 338 (352)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ 338 (352)
... +.++..++.+.|
T Consensus 426 -va~-~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 426 -VAN-LGRLHTLRAHSN 440 (1081)
T ss_pred -HHh-hhhhHHHhhcCC
Confidence 222 566666666666
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=167.17 Aligned_cols=289 Identities=24% Similarity=0.303 Sum_probs=206.8
Q ss_pred ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
...+.++..++.+|. ..|+..++++|..|.|+.||+. |+.+++||.|+|++|.|..+.| ..|..+++|..|-+.+
T Consensus 49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p---~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP---DAFKGLASLLSLVLYG 124 (498)
T ss_pred ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh---HhhhhhHhhhHHHhhc
Confidence 456777788888775 7888999999999999999886 8999999999999999998844 4677778877776665
Q ss_pred -CCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC---
Q 018662 106 -NKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR--- 176 (352)
Q Consensus 106 -~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~--- 176 (352)
|+|+.+|. +.++.+++.|.+.-|++..+.. .+..++++..|.+..|.+..+ ..+..+..++++.+..+.+-
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 89999887 8888888888887777765543 344477888888888877764 35777788888888777642
Q ss_pred Ccccc-----------cCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCC
Q 018662 177 VMENL-----------QNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHN 238 (352)
Q Consensus 177 ~~~~~-----------~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n 238 (352)
..++. +...-.....+....+... ..+....+.+--.+.+.... .| .|..+++|+.+++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 11111 1111111111111222222 11111122111112222222 23 4778999999999999
Q ss_pred CCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662 239 GISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ 314 (352)
Q Consensus 239 ~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 314 (352)
.++.+. +|...+.++.|.+..|++..+ ..|..+..|+.|++.+|+|+.+. ..++.....|.+|++-.|||.|+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe---cccccccceeeeeehccCcccCc
Confidence 999985 688999999999999999888 67899999999999999999765 34567778999999999999999
Q ss_pred ccccCCccHHH
Q 018662 315 IILLPSDKFSQ 325 (352)
Q Consensus 315 ~~~~~~~~~~~ 325 (352)
+ .-.++..
T Consensus 362 C---~l~wl~~ 369 (498)
T KOG4237|consen 362 C---RLAWLGE 369 (498)
T ss_pred c---chHHHHH
Confidence 9 4444543
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.6e-17 Score=169.72 Aligned_cols=276 Identities=18% Similarity=0.165 Sum_probs=206.8
Q ss_pred cccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCC-CCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANR-LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
+.+|+.|+++++.+..++. ...+++|++|+++++. +..+|. +..+++|++|++++|..... .+..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~---lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE---LPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc---cchhhhccCCCCE
Confidence 5789999999999998754 4567899999999875 567764 78899999999999854433 3345678999999
Q ss_pred EEccCC-CCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc-
Q 018662 101 LILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM- 178 (352)
Q Consensus 101 L~l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 178 (352)
|++++| .+..+|...++++|+.|++++|......+ ....+|++|+++++.+..++....+++|+.|.+.++.....
T Consensus 686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 999987 67788875578999999999986432221 22468999999999887755544677888888776432111
Q ss_pred --------ccccCCCCCcEEEccCCccce-e--cCCCCCCCCEEEcCCC-cCCCCcCccccccCcEEECCCCC-CCCCCC
Q 018662 179 --------ENLQNLTNLQELWLGRNRIKV-V--NLCGLKCIKKISLQSN-RLTSMKGFEECIALEELYLSHNG-ISKMEG 245 (352)
Q Consensus 179 --------~~~~~~~~L~~L~l~~~~l~~-~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 245 (352)
.....+++|+.|++++|.... . .+..+++|+.|++++| .+..+|....+++|+.|++++|. +..++.
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 112335689999999875332 2 5778899999999987 56666654578899999999874 444544
Q ss_pred CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCC-CCcchHHHHHHHhccccCccEeeccCCC
Q 018662 246 LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDN-QIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 246 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
. ..+|+.|++++|.++.+ ..+..+++|+.|++++| .++.++.. ...+++|+.+++++|+
T Consensus 844 ~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 I--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCG 904 (1153)
T ss_pred c--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCc
Confidence 3 36799999999999887 56788899999999985 46665532 3456888888888887
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=9.3e-17 Score=154.61 Aligned_cols=227 Identities=23% Similarity=0.246 Sum_probs=153.2
Q ss_pred ccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 101 (352)
.++.++.|++++|+++.+|. ..+++|++|++++|.++++|..+. ++|+.|++++|.+... | ..+ .++|+.|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P---~~l--~s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL-P---ERL--PSALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC-C---hhH--hCCCCEE
Confidence 35689999999999999886 445799999999999999987653 4899999999998863 2 222 3579999
Q ss_pred EccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181 (352)
Q Consensus 102 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 181 (352)
++++|.+..+|. .-.++|+.|++++|.+..++... ..+|+.|++++|.+..++. ...++|+.|++.+|.+..++.
T Consensus 268 ~Ls~N~L~~LP~-~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt~LP~- 342 (754)
T PRK15370 268 DLFHNKISCLPE-NLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALTSLPA- 342 (754)
T ss_pred ECcCCccCcccc-ccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCc-cccccceeccccCCccccCCh-
Confidence 999999998886 11358999999999998766432 3579999999998876432 123578888888877754432
Q ss_pred cCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC-----CCCCCCCcEEE
Q 018662 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLD 256 (352)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~ 256 (352)
.-.++|+.|++++|.+........++|+.|++++|.++.+|.- -...|+.|++++|++..+|. ....+.+..++
T Consensus 343 ~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 343 SLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred hhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 1124666666666665543222234566666666665555421 11245556666665555432 12234455555
Q ss_pred cCCCcCC
Q 018662 257 VSSNKLT 263 (352)
Q Consensus 257 l~~n~l~ 263 (352)
+.+|.+.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 5555553
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.1e-17 Score=145.09 Aligned_cols=267 Identities=22% Similarity=0.228 Sum_probs=142.2
Q ss_pred eeecCCCCCcCCCCC---CCCCcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCc--cccc-cccccccCC
Q 018662 28 VLDLTSFQLHDLDSV---EFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD--AAIE-PISRWDALA 96 (352)
Q Consensus 28 ~L~l~~~~l~~~~~~---~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~l~ 96 (352)
.|++.++.+++-... ...++|++|+++++.++ .++..+...+.+++++++++.+.. .... ....+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355666666532221 12355778888888774 344455666777888877776552 1000 112344566
Q ss_pred CCcEEEccCCCCCC-CCC-Cccc---cCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCC-CCCcEEEc
Q 018662 97 GLEELILRDNKLMK-IPD-VSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF-HDLQILEF 170 (352)
Q Consensus 97 ~L~~L~l~~~~l~~-l~~-~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 170 (352)
+|+.|++++|.+.. .+. +..+ ++|++|++++|.+........ ...+..+ ++|+.+++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l-----------------~~~l~~~~~~L~~L~L 144 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-----------------AKGLKDLPPALEKLVL 144 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH-----------------HHHHHhCCCCceEEEc
Confidence 77777777776652 111 2222 336666666665542110000 0112222 34444444
Q ss_pred CCCccCC------cccccCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCc
Q 018662 171 GSNRLRV------MENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALE 231 (352)
Q Consensus 171 ~~~~l~~------~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~ 231 (352)
.+|.+.. ...+..+++|++|++++|.+... .+...++|+.|++++|.+... ..+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 4444331 11233444555555555544421 122335666666666655433 1244567777
Q ss_pred EEECCCCCCCCC--CC----C-CCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHH-HHHHhcc
Q 018662 232 ELYLSHNGISKM--EG----L-STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESI-VEAVAGS 297 (352)
Q Consensus 232 ~L~l~~n~l~~~--~~----~-~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~ 297 (352)
+|++++|.+++. .. + ...+.|++|++++|.+++. ..+..+++|+++++++|.+++.+.. .......
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 777777776641 11 1 1246788888888887632 3345557888888888888865322 2223333
Q ss_pred c-cCccEeeccCCCc
Q 018662 298 R-ETLTTIYLENNPQ 311 (352)
Q Consensus 298 ~-~~L~~L~l~~n~~ 311 (352)
. +.|+.+++.+|||
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 4 6788888888864
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=1.2e-16 Score=141.97 Aligned_cols=252 Identities=24% Similarity=0.287 Sum_probs=153.9
Q ss_pred CccccccccccCceeecCCCCCcCC-----C-CCCCCCcccEEEcCCCCCCc-------chhhhhcCCCCcEEeccCCcc
Q 018662 15 NPDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTS-------LDSRISHLSNLKKLSLRQNLI 81 (352)
Q Consensus 15 ~~~~~~~~~~~l~~L~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~~~~ 81 (352)
+....+.....++.++++++.++.. . .+...+.+++++++++.+.. ++..+..+++|++|+++++.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 4456666667799999999998542 2 13345679999999987763 334567889999999999988
Q ss_pred CccccccccccccCCCCcEEEccCCCCCC-----CCC-Cccc-cCCcEEEccCCCccccc-----CCcccccCcceEEcc
Q 018662 82 DDAAIEPISRWDALAGLEELILRDNKLMK-----IPD-VSIF-KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVS 149 (352)
Q Consensus 82 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----l~~-~~~~-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~ 149 (352)
....+..+..+...++|++|++++|.+.. +.. +..+ ++|+.|++++|.+.... .....+.+|++|+++
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 75432222222111459999999998773 111 3445 78888888888876311 111223456666666
Q ss_pred CCcCCCc--ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCC
Q 018662 150 KNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTS 220 (352)
Q Consensus 150 ~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~ 220 (352)
+|.+... .. ....+...++|+.|++++|.+... .+..+++|+.|++++|.+++
T Consensus 174 ~n~l~~~~~~~------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 174 NNGIGDAGIRA------------------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCCchHHHHH------------------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 6555431 00 001122334445555554444322 23445667777777766654
Q ss_pred Cc--Ccc-----ccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc------ccccCC-CCCCeEEcC
Q 018662 221 MK--GFE-----ECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNL-SRLEDLWLN 280 (352)
Q Consensus 221 ~~--~~~-----~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~-~~L~~L~l~ 280 (352)
.. .+. ..+.|++|++++|.+++. ..+...++|+++++++|.++.. ..+... +.|+++++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 21 111 236788888888877631 2234457788888888888754 234444 678888888
Q ss_pred CCCC
Q 018662 281 DNQI 284 (352)
Q Consensus 281 ~n~i 284 (352)
+|++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7763
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=3.5e-18 Score=146.10 Aligned_cols=129 Identities=23% Similarity=0.306 Sum_probs=105.2
Q ss_pred cccccCceeecCCCCCcCCCCCCC--CCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccC-CccCccccccccccccCC
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA 96 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~ 96 (352)
++|+....+++..|.|+.+|+..| .++|++|+|++|.|+.|- ..|.+++.|.+|-+.+ |+|++. +-..|..+.
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l---~k~~F~gL~ 140 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL---PKGAFGGLS 140 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh---hhhHhhhHH
Confidence 456678999999999999998655 589999999999999885 4599999988887777 899986 455677888
Q ss_pred CCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCc
Q 018662 97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNE 152 (352)
Q Consensus 97 ~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 152 (352)
.|+.|.+.-|.+..++. +..++++..|.+.+|.+..+.. .+..+..++.+++..|.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 89999998888887664 7889999999999998887654 33446777888777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.6e-16 Score=120.07 Aligned_cols=158 Identities=30% Similarity=0.449 Sum_probs=124.3
Q ss_pred CCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-Cccc
Q 018662 39 LDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIF 117 (352)
Q Consensus 39 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 117 (352)
++.+.-.+++++|-+++|+++.+|+.+..+.+|+.|++++|++.. .+.++..+++|+.|++.-|.+..+|. ++.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh----cChhhhhchhhhheecchhhhhcCccccCCC
Confidence 344455688899999999999999999999999999999999887 45567788999999998888888887 8889
Q ss_pred cCCcEEEccCCCccc--ccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCcc-CCcccccCCCCCcEEEcc
Q 018662 118 KKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELWLG 193 (352)
Q Consensus 118 ~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~L~~L~l~ 193 (352)
|.|+.||+++|.+.. ++.-++.+..|+.|+++.|.+.- +..++++++|+.+.+..|.+ +.+..++.++.|++|.+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 999999999888764 44555557788888888888776 46788888888888877765 455667777777777777
Q ss_pred CCcccee
Q 018662 194 RNRIKVV 200 (352)
Q Consensus 194 ~~~l~~~ 200 (352)
+|.+.-.
T Consensus 182 gnrl~vl 188 (264)
T KOG0617|consen 182 GNRLTVL 188 (264)
T ss_pred cceeeec
Confidence 7766543
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.46 E-value=1.5e-14 Score=120.11 Aligned_cols=197 Identities=22% Similarity=0.271 Sum_probs=123.9
Q ss_pred CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccC---CcccccCCCCCcEE
Q 018662 114 VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR---VMENLQNLTNLQEL 190 (352)
Q Consensus 114 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~L~~L 190 (352)
+..+++|+.+.++.+.-..+......-+.|+++.+....++..+.+-....+.-.....-... ....+...+.|+++
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 344567777777777655555544455677777777665555433333332222222211111 11223344566777
Q ss_pred EccCCcccee--cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCC-CCCCCCcEEEcCCCcCCCccc
Q 018662 191 WLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLDVSSNKLTLVDD 267 (352)
Q Consensus 191 ~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 267 (352)
++++|.+..+ +..-.|.++.|+++.|.+..+..+..+++|+.|++++|.++.+.++ ..+-++++|.+++|.+..++.
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG 369 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG 369 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh
Confidence 7777777666 5566777777777777777776677777777777777777776543 356677777777777777766
Q ss_pred ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 268 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
+..+-+|..||+++|+|..+++. ...+++|.|.++.+.+||+.
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCcc
Confidence 77777777777777777766542 23466777777777777654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-15 Score=116.23 Aligned_cols=151 Identities=24% Similarity=0.270 Sum_probs=135.1
Q ss_pred ccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 24 LSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
...+.|.++.++++..++ +.-+.+|+.|++.+|+++++|.+++.+++|+.|+++-|++.. .+.+|+.++-|+.||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~----lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI----LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc----CccccCCCchhhhhh
Confidence 456888999999998865 567899999999999999999999999999999999998776 466888999999999
Q ss_pred ccCCCCC--CCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-cccccCCCCCcEEEcCCCccCCc
Q 018662 103 LRDNKLM--KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLRVM 178 (352)
Q Consensus 103 l~~~~l~--~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~ 178 (352)
+.+|++. .+|. +..+..|+.|++++|.+.-+++..+.+.+|+.|.+..|.+.+ +..++.+..|+++.+.+|++..+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 9999887 5776 888999999999999999999888889999999999998777 56799999999999999998743
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.43 E-value=8.9e-14 Score=110.20 Aligned_cols=125 Identities=30% Similarity=0.376 Sum_probs=31.5
Q ss_pred ccCCCCCcEEEccCCcccee-cCC-CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC-CC-CCCCCCcEEE
Q 018662 181 LQNLTNLQELWLGRNRIKVV-NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GL-STLVNLHVLD 256 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~-~~~~~L~~L~ 256 (352)
+.++..+++|++.++.+... .+. .+.+|+.|++++|.++.++.+..++.|+.|++++|.++.+. .+ ..+++|++|.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 33344445555555544444 222 23445555555555555544445555555555555555443 12 1344555555
Q ss_pred cCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEee
Q 018662 257 VSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305 (352)
Q Consensus 257 l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~ 305 (352)
+++|+|.++ ..+..+++|+.|++.+|+++..+..-..+...+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555555443 3334445555555555555544333333334445555543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=2e-13 Score=108.18 Aligned_cols=132 Identities=30% Similarity=0.471 Sum_probs=57.1
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCcc-ccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc-ccc-cCCCCCCeE
Q 018662 201 NLCGLKCIKKISLQSNRLTSMKGFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDI-QNLSRLEDL 277 (352)
Q Consensus 201 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~-~~~~~L~~L 277 (352)
....+..++.|++.+|.++.+..++ .+.+|+.|++++|.++.++++..++.|+.|++++|+++.+ +.+ ..+++|++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4455668899999999999998776 5789999999999999999999999999999999999998 444 468999999
Q ss_pred EcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceecee
Q 018662 278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFS 345 (352)
Q Consensus 278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (352)
++++|+|.++.+. ..+..+++|+.|++.|||+... + -.|...++.++.+.++|..
T Consensus 94 ~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~----~-------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEK----K-------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGS----T-------THHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHh--HHHHcCCCcceeeccCCcccch----h-------hHHHHHHHHcChhheeCCE
Confidence 9999999987653 3456789999999999986422 2 3456677778888887654
No 26
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-13 Score=126.65 Aligned_cols=265 Identities=40% Similarity=0.588 Sum_probs=174.3
Q ss_pred CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (352)
Q Consensus 45 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L 123 (352)
++.++.++...+.+.........+..++.+.+..+.+.. ....+..+++|+.|++.+|.+..+.. +..+++|++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L 123 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVL 123 (414)
T ss_pred cchhhhhcchhccccchhhhHHHhHhHHhhccchhhhhh----hhcccccccceeeeeccccchhhcccchhhhhcchhe
Confidence 345555555555433221111345566666666666655 12234556777777777777777776 6777777777
Q ss_pred EccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCccc--ccCCCCCcEEEccCCcccee-
Q 018662 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV- 200 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~~- 200 (352)
++++|.+..+.+... +..|+.|++.+|.+..+..+..+..|+.+++++|.+..+.. ...+.+++.+++.+|.+...
T Consensus 124 ~ls~N~I~~i~~l~~-l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 124 DLSFNKITKLEGLST-LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred eccccccccccchhh-ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence 777777776654333 34477777777777777777777778888888777766655 47777777777777777666
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCcccccc--CcEEECCCCCCCCC-CCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeE
Q 018662 201 NLCGLKCIKKISLQSNRLTSMKGFEECIA--LEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277 (352)
Q Consensus 201 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L 277 (352)
.......+..+++..|.+.....+...+. |+.+++.+|++..+ ..+..+..+..+++..|++.....+...+.+..+
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~ 282 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSEL 282 (414)
T ss_pred chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHh
Confidence 45555555556777777766654444444 78888888888777 6677777788888888888777667777777778
Q ss_pred EcCCCCCcchHHHHHHH-hccccCccEeeccCCCcccc
Q 018662 278 WLNDNQIESLESIVEAV-AGSRETLTTIYLENNPQNLQ 314 (352)
Q Consensus 278 ~l~~n~i~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~ 314 (352)
....+.+.......... ...-+.++.+.+.+||....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 88887766432222221 34457777888888875443
No 27
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.25 E-value=7.4e-13 Score=121.57 Aligned_cols=235 Identities=32% Similarity=0.399 Sum_probs=125.2
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccc-cccCCCCcEEEccCCCCCCCCCCccccCCcEEE
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISR-WDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~ 124 (352)
..+..+.++.+.+.++...+..+++|+.|++.+|.+..+ .. +..+++|++|++++|.|..+..+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 444444455555554433445555555555555555542 12 334555555555555555555555555555555
Q ss_pred ccCCCcccccCCcccccCcceEEccCCcCCCccc--ccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-c
Q 018662 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-N 201 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~ 201 (352)
+++|.+..+..... +..|+.+++++|.+..... ...+.+++.+++.++.+..+.++.....+..+.+..+.+... .
T Consensus 147 l~~N~i~~~~~~~~-l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 147 LSGNLISDISGLES-LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred eccCcchhccCCcc-chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence 55555554433222 4555555555555555444 355555666666666555554444444444445555555444 2
Q ss_pred CCCCCC--CCEEEcCCCcCCCC-cCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc------ccccCCC
Q 018662 202 LCGLKC--IKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV------DDIQNLS 272 (352)
Q Consensus 202 ~~~~~~--L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~ 272 (352)
...... |+.+.+.++.+... ..+..+..+..+++..+.+..+..+.....+..+....+.+... ......+
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 233333 56666666666555 44555666666666666666665555555556666666655422 1134455
Q ss_pred CCCeEEcCCCCCcc
Q 018662 273 RLEDLWLNDNQIES 286 (352)
Q Consensus 273 ~L~~L~l~~n~i~~ 286 (352)
.+..+.+.+|.+..
T Consensus 306 ~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 306 TLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccCcccc
Confidence 66666666666554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.8e-12 Score=107.86 Aligned_cols=130 Identities=28% Similarity=0.403 Sum_probs=103.8
Q ss_pred CCCCCcEEEcCCCccCCcc-cccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCC
Q 018662 161 HFHDLQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSH 237 (352)
Q Consensus 161 ~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~ 237 (352)
-...|+++++++|.++.++ ++.-.|.++.|+++.|.+..+ .+..+++|+.|++++|.++... +-..+-+++.|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 3455777788887776553 456677888888888887776 6777888888888888887774 334677888999999
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHH
Q 018662 238 NGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESI 290 (352)
Q Consensus 238 n~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~ 290 (352)
|.+.++.+++.+-+|..||+++|+|..+ ..++.+|.|+.+.+.+|++..+++.
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999999899999999999999998776 6788899999999999998877643
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=2e-12 Score=109.68 Aligned_cols=231 Identities=23% Similarity=0.271 Sum_probs=99.9
Q ss_pred CcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCc---cccccc----cccccCCCCcEEEccCCCCC--CC
Q 018662 46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD---AAIEPI----SRWDALAGLEELILRDNKLM--KI 111 (352)
Q Consensus 46 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~---~~~~~~----~~~~~l~~L~~L~l~~~~l~--~l 111 (352)
..++++++++|.+. .+...+.+.++|+..+++.--... ..|+.+ ..+..+++|++|+|+.|.+. .+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 56677777777665 244445666667766666532111 111111 11233445555555555443 12
Q ss_pred CC----CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc------ccc
Q 018662 112 PD----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------ENL 181 (352)
Q Consensus 112 ~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~~ 181 (352)
+. ++++..|++|.+.+|.+........ -..|.++.. ....+..++|+.+...+|++..- ..+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELAV-------NKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHHH-------HhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 21 3334445555555554432111000 000111110 01123344555555555554311 123
Q ss_pred cCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC-----
Q 018662 182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM----- 243 (352)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~----- 243 (352)
..++.|+.+.+..|.+... .+..++.|+.|++.+|.++.. ..+..++.|+.+++++|.+..-
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 4445555555555544432 344455555555555544332 1233445555555555555431
Q ss_pred -CC-CCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCC
Q 018662 244 -EG-LSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQI 284 (352)
Q Consensus 244 -~~-~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i 284 (352)
.. -...++|+.+.+.+|.++.- ..+...+.|+.|++++|++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 00 12244555555555555321 1223344555555555555
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-12 Score=113.07 Aligned_cols=38 Identities=37% Similarity=0.392 Sum_probs=20.7
Q ss_pred ccccCcEEECCCCCCCCCCC---CCCCCCCcEEEcCCCcCC
Q 018662 226 ECIALEELYLSHNGISKMEG---LSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 226 ~~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~ 263 (352)
..++|++|++..|++.+.++ +...++|+.|.+..|++.
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 35566666666666655433 334455555666555554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.6e-12 Score=111.91 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=108.4
Q ss_pred CCCCcEEEccCCCCCCCC---CCccccCCcEEEccCCCcccccC---CcccccCcceEEccCCcCCCcc---cccCCCCC
Q 018662 95 LAGLEELILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSHG---LSNVTDTLKELYVSKNEVPKME---EIEHFHDL 165 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L 165 (352)
+.+|+.+.+.++.+...+ ....+++++.||++.|-+....+ +...+++|+.|+++.|.+..+. .-..++.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 344444444444433222 13334444444554444333221 1122444455555444443321 11244566
Q ss_pred cEEEcCCCccCC---cccccCCCCCcEEEccCCc-ccee--cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECC
Q 018662 166 QILEFGSNRLRV---MENLQNLTNLQELWLGRNR-IKVV--NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLS 236 (352)
Q Consensus 166 ~~L~l~~~~l~~---~~~~~~~~~L~~L~l~~~~-l~~~--~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~ 236 (352)
+.|.+++|+++. ...+..+|.++.|++..|. +... ....++.|+.|++++|++...+ ....+|.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 667777776651 1224567777777777773 2222 4455677888888888776664 35677888888888
Q ss_pred CCCCCCCCC--------CCCCCCCcEEEcCCCcCCCccc---ccCCCCCCeEEcCCCCCcc
Q 018662 237 HNGISKMEG--------LSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 237 ~n~l~~~~~--------~~~~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~i~~ 286 (352)
.+++.++.. ....++|++|+++.|++..+.. +..+++|+.+.+.+|.+..
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888776532 2456778888888888876633 3445667777777777664
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.5e-11 Score=110.18 Aligned_cols=190 Identities=31% Similarity=0.426 Sum_probs=120.2
Q ss_pred EEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCC-CCcEEEccCCCCCCCC-CCccccCCcEEEccC
Q 018662 50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA-GLEELILRDNKLMKIP-DVSIFKKLSVFDVSF 127 (352)
Q Consensus 50 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~ 127 (352)
.+....+.+..-...+...+.++.|++.++.++...+ ...... +|+.|++++|.+..+| .+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~----~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP----LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcc----ccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 4566666554333334455667777777776666422 122232 6777777777777664 366677777777777
Q ss_pred CCcccccCCcccccCcceEEccCCcCCCcccc-cCCCCCcEEEcCCC-ccCCcccccCCCCCcEEEccCCccce--ecCC
Q 018662 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSN-RLRVMENLQNLTNLQELWLGRNRIKV--VNLC 203 (352)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~l~~--~~~~ 203 (352)
|++..++......+.|+.|++++|.+..++.. .....|+++.+.+| .+..+..+..+..+..+.+.++.+.. ..+.
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 77766665544556677777777776665443 34445777777776 34455556666666666666666665 3666
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC
Q 018662 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243 (352)
Q Consensus 204 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 243 (352)
.+++++++++++|.+..++.+....+++.++++++.+..+
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 6677777777777777776666777777777777766553
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=6.7e-11 Score=108.37 Aligned_cols=168 Identities=27% Similarity=0.411 Sum_probs=78.0
Q ss_pred cCCcEEEccCCCcccccCCccccc-CcceEEccCCcCCCc-ccccCCCCCcEEEcCCCccCCccccc-CCCCCcEEEccC
Q 018662 118 KKLSVFDVSFNEITSSHGLSNVTD-TLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMENLQ-NLTNLQELWLGR 194 (352)
Q Consensus 118 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~l~~ 194 (352)
+.++.+++.++.+..+.+...... +|+.|+++.|.+... ..++.++.|+.|++..|++..++... ..+.|+.+++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 444444444444444444333332 444444444444443 24444555555555555544333332 444555555555
Q ss_pred CccceecC--CCCCCCCEEEcCCCcC-CCCcCccccccCcEEECCCCCCCC-CCCCCCCCCCcEEEcCCCcCCCcccccC
Q 018662 195 NRIKVVNL--CGLKCIKKISLQSNRL-TSMKGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLVDDIQN 270 (352)
Q Consensus 195 ~~l~~~~~--~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 270 (352)
|.+..... .....|+.+.+++|.. .....+....++..+.+..|++.. ...+..+++++.|++++|.++.++.+..
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~ 275 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGS 275 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccc
Confidence 55444421 2333355555555522 222234444445555555554444 2334444445555555555555544445
Q ss_pred CCCCCeEEcCCCCCc
Q 018662 271 LSRLEDLWLNDNQIE 285 (352)
Q Consensus 271 ~~~L~~L~l~~n~i~ 285 (352)
..+++.+++++|.+.
T Consensus 276 ~~~l~~L~~s~n~~~ 290 (394)
T COG4886 276 LTNLRELDLSGNSLS 290 (394)
T ss_pred cCccCEEeccCcccc
Confidence 555555555555444
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=105.12 Aligned_cols=240 Identities=23% Similarity=0.266 Sum_probs=152.7
Q ss_pred hhcCCCCcEEeccCCccCcccccccc-ccccCCCCcEEEccCCCCC----CCCC--------CccccCCcEEEccCCCcc
Q 018662 65 ISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLM----KIPD--------VSIFKKLSVFDVSFNEIT 131 (352)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~----~l~~--------~~~~~~L~~L~l~~~~~~ 131 (352)
+..+..++++++++|.+..-....+. .+.+.++|+..++++--.. .+|. +..+|+|+++++|+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45667888888888877664333322 2345567777776642111 2221 344556777777777654
Q ss_pred cc-----cCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee------
Q 018662 132 SS-----HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV------ 200 (352)
Q Consensus 132 ~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~------ 200 (352)
.- ......+..|++|++.+|.+.....-.--..|..+. .....+..+.|+.+...+|.+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 31 112222455555555555544311000000011111 012245667899999999987765
Q ss_pred -cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc--
Q 018662 201 -NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV-- 265 (352)
Q Consensus 201 -~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~-- 265 (352)
.+...+.|+.+.+..|.+..- ..+..|++|+.|++++|.++.- ..++.+++|+.|++++|.++.-
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 567779999999999977543 2477899999999999988752 2467788999999999998754
Q ss_pred ----ccc-cCCCCCCeEEcCCCCCcchHHH-HHHHhccccCccEeeccCCCc
Q 018662 266 ----DDI-QNLSRLEDLWLNDNQIESLESI-VEAVAGSRETLTTIYLENNPQ 311 (352)
Q Consensus 266 ----~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~~~L~~L~l~~n~~ 311 (352)
..+ ...|+|+.+.+.+|.|+.-... +.......|.|..|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 112 3478999999999999863321 222233369999999999987
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=2.1e-11 Score=109.73 Aligned_cols=218 Identities=25% Similarity=0.260 Sum_probs=164.6
Q ss_pred CccccccccccCceeecCCCCCcCCCCCCC---CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccc
Q 018662 15 NPDQAVEIDLSNTVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISR 91 (352)
Q Consensus 15 ~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 91 (352)
..++.++...---.|.|++.+++.+|.... ...-...+++.|++.++|..+..|..|+.+.+..|.+..+ +..
T Consensus 41 sl~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i----p~~ 116 (722)
T KOG0532|consen 41 SLERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI----PEA 116 (722)
T ss_pred hhhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec----chh
Confidence 344444444455677888888888765332 3456678899999999998888888999999999888773 445
Q ss_pred cccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEE
Q 018662 92 WDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILE 169 (352)
Q Consensus 92 ~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~ 169 (352)
..++..|++++++.|++..+|. +..++ |+.|-+++|++..++...+...+|..|+++.|.+.++ ..++.+.+|+.+.
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 6678889999999999998887 54454 8888999999988887666778899999999988884 5588888888888
Q ss_pred cCCCccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCcC----ccccccCcEEECCCC
Q 018662 170 FGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKG----FEECIALEELYLSHN 238 (352)
Q Consensus 170 l~~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n 238 (352)
+..|++. .++.+..+ .|..|+++.|++... .|..+..|++|.+.+|.+.+-|. .+...-.++|+..-|
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888875 44556644 488899999988887 77788999999999998887652 122333455555555
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2.1e-09 Score=105.93 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=106.4
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCC--CCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANR--LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~--l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
...+.+.+-++.+..++....++.|++|-+..+. +..++.. |..+|.|+.|++++|.--.. .+..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~---LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK---LPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc---CChHHhhhhhhhc
Confidence 4568888888888877766677789999999996 6666665 77899999999998643332 3445567889999
Q ss_pred EEccCCCCCCCCC-CccccCCcEEEccCCCccccc-CCcccccCcceEEccCCcCCC----cccccCCCCCcEEEcCC
Q 018662 101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGS 172 (352)
Q Consensus 101 L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~ 172 (352)
|+++++.+..+|. +.+++.|.+|++..+...... .....+.+|++|.+....... ...+.++.+|+.+....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999999998 888999999999987654333 344448889999887665221 23345555555555543
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.86 E-value=5e-11 Score=110.20 Aligned_cols=170 Identities=24% Similarity=0.318 Sum_probs=122.6
Q ss_pred ccCcceEEccCCcCCCcccccCC-CCCcEEEcCCCccCC--------cccccC---CCCCcEEEccCCcccee--cCCCC
Q 018662 140 TDTLKELYVSKNEVPKMEEIEHF-HDLQILEFGSNRLRV--------MENLQN---LTNLQELWLGRNRIKVV--NLCGL 205 (352)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~--------~~~~~~---~~~L~~L~l~~~~l~~~--~~~~~ 205 (352)
..+|+.|.+.++.+.....+..+ ..|++|.-.+ .+.. ...+.+ ...|...+++.|.+..+ .+.-+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll 186 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLL 186 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHH
Confidence 56788888888887764333222 2344443222 1110 111111 12455666677766655 66778
Q ss_pred CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCC--CCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCC
Q 018662 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS--TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQ 283 (352)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 283 (352)
+.++.|+++.|+++.+..+..++.|++||+++|.+..++-++ .+ +|+.|.+++|.++.+..+.++.+|+.||++.|-
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence 899999999999999988889999999999999999887654 33 399999999999999889999999999999999
Q ss_pred CcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 284 IESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 284 i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
|....+. ..+..+..|+.|+|.|||+-|
T Consensus 266 l~~hseL--~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 266 LSEHSEL--EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence 8875432 334556889999999998543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.84 E-value=4.1e-11 Score=110.72 Aligned_cols=127 Identities=32% Similarity=0.435 Sum_probs=105.8
Q ss_pred CCCcEEEcCCCccCCcc-cccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCcc--ccccCcEEECCCC
Q 018662 163 HDLQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFE--ECIALEELYLSHN 238 (352)
Q Consensus 163 ~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~n 238 (352)
.+|.+.+.+.|.+..++ ++.-+++++.|++++|++... .+..++.|++||+++|.+..+|.++ .|. |+.|.+++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 34666777777776553 467788999999999999888 7788999999999999999988654 444 999999999
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHH
Q 018662 239 GISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESI 290 (352)
Q Consensus 239 ~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~ 290 (352)
.++++-++.++.+|+.||+++|-+.+- ..++.+..|+.|++.||++-.-|..
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 999998888999999999999988765 6677888999999999998876643
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=2.1e-10 Score=103.44 Aligned_cols=169 Identities=22% Similarity=0.301 Sum_probs=97.6
Q ss_pred CCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcc-cccCCCCCcEEEcCC
Q 018662 95 LAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME-EIEHFHDLQILEFGS 172 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~ 172 (352)
+..-...|++.|.+..+|. +..+..|..+.++.|.+..++.....+..|..++++.|.+...+ .+..+ -|+.+-+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEec
Confidence 4444566677777777665 55566666677777766666655555666666666666665532 22222 256666666
Q ss_pred CccC-CcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCC-CCC
Q 018662 173 NRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKME-GLS 247 (352)
Q Consensus 173 ~~l~-~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~ 247 (352)
|++. .+..++..+.|..++.+.|.+... .++.+.+|+.+.+..|.+..+| .+. .-.|..||+++|++..+| .|.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhh
Confidence 6654 334455555666666666655554 4555556666666666555554 233 223556666666666655 355
Q ss_pred CCCCCcEEEcCCCcCCCc
Q 018662 248 TLVNLHVLDVSSNKLTLV 265 (352)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~ 265 (352)
.++.|++|.|.+|.+...
T Consensus 232 ~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhheeeeeccCCCCCC
Confidence 566666666666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=5.3e-09 Score=68.28 Aligned_cols=60 Identities=37% Similarity=0.542 Sum_probs=41.0
Q ss_pred CcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCC
Q 018662 46 TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL 108 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 108 (352)
++|++|++++|++..+|.. |.++++|++|++++|.++.. ....|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777777654 66777777777777777665 233566677777777777653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.2e-08 Score=65.35 Aligned_cols=59 Identities=34% Similarity=0.514 Sum_probs=41.6
Q ss_pred CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCc
Q 018662 69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEI 130 (352)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~ 130 (352)
|+|++|++++|.++.. +...|..+++|++|++++|.+..+++ +..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i---~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI---PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE---CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc---CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777765 33456667777777777777776665 67777777777777753
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=3.4e-08 Score=82.62 Aligned_cols=205 Identities=19% Similarity=0.189 Sum_probs=139.3
Q ss_pred eeecCCCCCcCCCC----CCCCCcccEEEcCCCCCCcch---hhhhcCCCCcEEeccCCccCcccccccccc-ccCCCCc
Q 018662 28 VLDLTSFQLHDLDS----VEFPTNLTELDLTANRLTSLD---SRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLE 99 (352)
Q Consensus 28 ~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~ 99 (352)
.+-+-++.|.+... ...+++++++++.+|.|+... ..+.++|+|+.|+++.|++.. ++..+ ....+|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCcccccceE
Confidence 44555666655432 134588999999999998543 346899999999999998876 33333 2467899
Q ss_pred EEEccCCCCC--CCCC-CccccCCcEEEccCCCcccccC----CcccccCcceEEccCCcCCCccc----ccCCCCCcEE
Q 018662 100 ELILRDNKLM--KIPD-VSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEVPKMEE----IEHFHDLQIL 168 (352)
Q Consensus 100 ~L~l~~~~l~--~l~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L 168 (352)
+|-+.++.+. .... +..+|.++.|.++.|.+..+.. .....+.+++++...|....... ...++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9999888765 2333 6678888999999885543211 11124567777777776544322 3456888888
Q ss_pred EcCCCccCCc---ccccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCC-----c---CccccccCcEE
Q 018662 169 EFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-----K---GFEECIALEEL 233 (352)
Q Consensus 169 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~-----~---~~~~~~~L~~L 233 (352)
.+..+++... ......+.+-.|.++.+++++. .+..++.|..|.+..+.+... + -++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 8888877533 3455667777888888888877 667888999999988876543 1 14567777776
Q ss_pred ECC
Q 018662 234 YLS 236 (352)
Q Consensus 234 ~l~ 236 (352)
+=+
T Consensus 285 NGs 287 (418)
T KOG2982|consen 285 NGS 287 (418)
T ss_pred cCc
Confidence 543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=2.6e-08 Score=98.37 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=136.4
Q ss_pred CCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCc--cCccccccccccccCCCCcEEEccCC-CCCC
Q 018662 34 FQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL--IDDAAIEPISRWDALAGLEELILRDN-KLMK 110 (352)
Q Consensus 34 ~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~ 110 (352)
......+....+...+++.+-++.+..++... .+++|++|-+.++. +... ..+.|..++.|++||+++| .+..
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCc
Confidence 34444555566688999999999988776653 45689999999985 4443 3344788999999999987 6788
Q ss_pred CCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCC-c-ccccCCCCCcEEEcCCCccC----CcccccC
Q 018662 111 IPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-M-EEIEHFHDLQILEFGSNRLR----VMENLQN 183 (352)
Q Consensus 111 l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~l~----~~~~~~~ 183 (352)
+|. ++.+-+|++|+++++.+..++.....+..|.+|++..+.... + .....+.+|++|.+...... ....+..
T Consensus 587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~ 666 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN 666 (889)
T ss_pred CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence 998 888999999999999999998888888999999999876433 3 33445899999999776532 2233455
Q ss_pred CCCCcEEEccCCcccee-cCCCCCCCC----EEEcCCCcCC-CCcCccccccCcEEECCCCCCCC
Q 018662 184 LTNLQELWLGRNRIKVV-NLCGLKCIK----KISLQSNRLT-SMKGFEECIALEELYLSHNGISK 242 (352)
Q Consensus 184 ~~~L~~L~l~~~~l~~~-~~~~~~~L~----~L~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~ 242 (352)
+.+|+.+.......... .+.....|. .+.+.++... ....+..+.+|+.|.+.++.+.+
T Consensus 667 Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 667 LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 55555555433322000 112222222 2222222221 22345567777777777776654
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.9e-08 Score=84.18 Aligned_cols=190 Identities=19% Similarity=0.184 Sum_probs=98.0
Q ss_pred CCCCcEEEccCCCCCCCCC----CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCc---ccccCCCCCc
Q 018662 95 LAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKM---EEIEHFHDLQ 166 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~ 166 (352)
++.++.+|+.+|.++.+.. +.++|.|+.|+++.|++....... ....+|+.|.+++..+... ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4444555555554443222 334555555555555544332222 2234555555555544331 2244555555
Q ss_pred EEEcCCCccCCc----cccc-CCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCC---cCccccccCcEE
Q 018662 167 ILEFGSNRLRVM----ENLQ-NLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSM---KGFEECIALEEL 233 (352)
Q Consensus 167 ~L~l~~~~l~~~----~~~~-~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L 233 (352)
.+.++.|.+... .... -.+.++++.+..|..... ....++++..+.+..+.+... ......|.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 565555533211 0011 122444454444433222 223467777777877766555 245566777777
Q ss_pred ECCCCCCCCC---CCCCCCCCCcEEEcCCCcCCCc--------ccccCCCCCCeEEcCCCCCcc
Q 018662 234 YLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 234 ~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n~i~~ 286 (352)
+++.+++... +.+.+++.|..|.++++.+.+. -.+..+++++.|+=+ +|++
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 8888877764 3456777788888888877543 123455666655433 5543
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=3.8e-09 Score=92.06 Aligned_cols=259 Identities=19% Similarity=0.119 Sum_probs=150.5
Q ss_pred cccEEEcCCCCCC---cchhhhhcCCCCcEEeccCCc-cCcccccccccc-ccCCCCcEEEccCC-CCCC--CCC-Cccc
Q 018662 47 NLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRW-DALAGLEELILRDN-KLMK--IPD-VSIF 117 (352)
Q Consensus 47 ~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~l~~L~~L~l~~~-~l~~--l~~-~~~~ 117 (352)
.++.|.++++.=. .+-....++|+++.|.+.++. +++.. ...+ ..+++|++|++..| .++. +.. ...+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s---~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS---LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH---HHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 4667777777543 233334677788888777763 44331 2222 35777788877775 4442 221 3457
Q ss_pred cCCcEEEccCCCccc---ccCCcccccCcceEEccCCcCCCccc----ccCCCCCcEEEcCCCc-cCCc---ccccCCCC
Q 018662 118 KKLSVFDVSFNEITS---SHGLSNVTDTLKELYVSKNEVPKMEE----IEHFHDLQILEFGSNR-LRVM---ENLQNLTN 186 (352)
Q Consensus 118 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-l~~~---~~~~~~~~ 186 (352)
++|++++++++.-.. +......+..++.+...+|.-.+... -+.+..+..+++..|. ++.. ..-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 777888887775332 22223334556666666654443222 1233445555544442 2211 11245666
Q ss_pred CcEEEccCCcc-cee----cCCCCCCCCEEEcCCCcC-CCCc---CccccccCcEEECCCCCCCC---CC-CCCCCCCCc
Q 018662 187 LQELWLGRNRI-KVV----NLCGLKCIKKISLQSNRL-TSMK---GFEECIALEELYLSHNGISK---ME-GLSTLVNLH 253 (352)
Q Consensus 187 L~~L~l~~~~l-~~~----~~~~~~~L~~L~l~~~~~-~~~~---~~~~~~~L~~L~l~~n~l~~---~~-~~~~~~~L~ 253 (352)
|+.+..+++.- +.. -...+.+|+.+.+.+++- +... --.+++.|+.+++..+.... +. .-..++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 77777766543 222 234567888888888743 3321 12467788888888775433 22 234677888
Q ss_pred EEEcCCCcC-CCc------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 254 VLDVSSNKL-TLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 254 ~L~l~~n~l-~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
.+.++++.. ++. ..-..+..|+.+.+++++.+. +........|++|+.+++-++.
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCcccceeeeechh
Confidence 888887764 222 223455678888888888554 5556667888888888888875
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=2.3e-08 Score=82.62 Aligned_cols=238 Identities=22% Similarity=0.227 Sum_probs=133.5
Q ss_pred CCcccEEEcCCCCCCc-----chhhhhcCCCCcEEeccCCccCcc---ccc----cccccccCCCCcEEEccCCCCC-CC
Q 018662 45 PTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDA---AIE----PISRWDALAGLEELILRDNKLM-KI 111 (352)
Q Consensus 45 ~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~---~~~----~~~~~~~l~~L~~L~l~~~~l~-~l 111 (352)
...+.++++++|.|.+ +...+.+-++|+..+++.-..... .++ ....+..|++|+..+++.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4667777777777662 334455556676666665321110 000 1122345556666666655444 22
Q ss_pred CC-----CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc------cc
Q 018662 112 PD-----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------EN 180 (352)
Q Consensus 112 ~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~ 180 (352)
|. +++...|.+|.+++|.+..+..... -..|.+|-. ..-...-|.|+.+....|++... ..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri-gkal~~la~-------nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRI-GKALFHLAY-------NKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHH-HHHHHHHHH-------HhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 21 3444455555555554432211000 001111100 01123456677777777776422 12
Q ss_pred ccCCCCCcEEEccCCcccee--------cCCCCCCCCEEEcCCCcCCCCc------CccccccCcEEECCCCCCCCC--C
Q 018662 181 LQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM--E 244 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~--~ 244 (352)
+.....|+.+.+..|.+... ....+.+|+.|++++|.++... .+..++.|+.|.+..|-++.- .
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 34446788888888877665 4566788999999988776542 244567788888888877642 1
Q ss_pred ----CC--CCCCCCcEEEcCCCcCCCc--c--cc-----cCCCCCCeEEcCCCCCcchHHH
Q 018662 245 ----GL--STLVNLHVLDVSSNKLTLV--D--DI-----QNLSRLEDLWLNDNQIESLESI 290 (352)
Q Consensus 245 ----~~--~~~~~L~~L~l~~n~l~~~--~--~~-----~~~~~L~~L~l~~n~i~~~~~~ 290 (352)
.+ ...++|..|..++|.+.+- . .+ ..+|-|..|.+.||+|....+.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~ 321 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADF 321 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHH
Confidence 11 2457788888888876432 1 11 3567788888888888865443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.1e-09 Score=86.33 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=89.9
Q ss_pred CcccEEEcCCCCCC--cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCC-CCCCCCC---CccccC
Q 018662 46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIPD---VSIFKK 119 (352)
Q Consensus 46 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~---~~~~~~ 119 (352)
+++++|+++...++ ++-..++.|.+|+.|++.++.+.+.. ...+.....|+.|+++.| .++.... +.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I---~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI---VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH---HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 45777777777776 44445677777777777777776631 223445667777777766 4553322 566677
Q ss_pred CcEEEccCCCccccc---CCcccccCcceEEccCCcCCC----cc-cccCCCCCcEEEcCCCccC---CcccccCCCCCc
Q 018662 120 LSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK----ME-EIEHFHDLQILEFGSNRLR---VMENLQNLTNLQ 188 (352)
Q Consensus 120 L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~----~~-~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~L~ 188 (352)
|..|++++|.+.... ...+..++|..|+++++.-.- +. -...+++|.+|+++.+..- ....+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 777777777654321 112224556666666653111 11 1345555666666554331 112344555555
Q ss_pred EEEccCCccc-ee---cCCCCCCCCEEEcCCC
Q 018662 189 ELWLGRNRIK-VV---NLCGLKCIKKISLQSN 216 (352)
Q Consensus 189 ~L~l~~~~l~-~~---~~~~~~~L~~L~l~~~ 216 (352)
++.++.|..- .. .+...|.|.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5555554311 11 3444455555555444
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.6e-09 Score=87.26 Aligned_cols=171 Identities=22% Similarity=0.131 Sum_probs=127.8
Q ss_pred cCceeecCCCCCcCCCC---CCCCCcccEEEcCCCCCC-cchhhhhcCCCCcEEeccCC-ccCccccccccccccCCCCc
Q 018662 25 SNTVLDLTSFQLHDLDS---VEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~ 99 (352)
.+++||+++..++--.. +..|.+|+.|.+.++++. .+...+.+..+|+.|+++.+ .++..+... -+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH--HHHhhhhHh
Confidence 48999999998875322 345789999999999998 67778999999999999996 566543222 246899999
Q ss_pred EEEccCCCCCC-C-CC-C-ccccCCcEEEccCCCcc----cccCCcccccCcceEEccCCcCCC---cccccCCCCCcEE
Q 018662 100 ELILRDNKLMK-I-PD-V-SIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQIL 168 (352)
Q Consensus 100 ~L~l~~~~l~~-l-~~-~-~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L 168 (352)
.|++++|.+.. . .. + .--++|+.|+++++.-. ++......++++.+|+++.|.... ...+.+++.|+++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999997663 1 11 2 22467899999988532 223334459999999999997666 3567889999999
Q ss_pred EcCCCccCCc---ccccCCCCCcEEEccCCcc
Q 018662 169 EFGSNRLRVM---ENLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 169 ~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l 197 (352)
.++.|-.-.+ -.+...|.|.+|++.++--
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9999855333 3467888999999877643
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.38 E-value=6.3e-07 Score=71.02 Aligned_cols=124 Identities=23% Similarity=0.325 Sum_probs=93.5
Q ss_pred CceeecCCCCCcCCCCCCC-CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+.+++++.++..+..++. ..+...+++++|.+..++ .|..++.|.+|.+++|.|+.+.+.. . ..++.|..|.+.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L-~--~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL-D--TFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccch-h--hhccccceEEec
Confidence 5778888888877766544 367788999999888764 3778889999999999998875532 2 347889999999
Q ss_pred CCCCCCC---CCCccccCCcEEEccCCCcccccC----CcccccCcceEEccCCcC
Q 018662 105 DNKLMKI---PDVSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEV 153 (352)
Q Consensus 105 ~~~l~~l---~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 153 (352)
+|.+..+ .++..+|+|++|.+-+|+...... +...+++|+.|++.+-..
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9887754 447788999999999998876543 344578999998876543
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=1.1e-06 Score=84.90 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=71.6
Q ss_pred cccEEEcCCCCCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC-CCC-CccccCCcEE
Q 018662 47 NLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLSVF 123 (352)
Q Consensus 47 ~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~~L~~L 123 (352)
.++.|+|++|.+. .+|..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+ +|. +..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 3778888888887 677778888888888888888876432 346677888888888888874 555 7778888888
Q ss_pred EccCCCcccccCCc-cc-ccCcceEEccCCc
Q 018662 124 DVSFNEITSSHGLS-NV-TDTLKELYVSKNE 152 (352)
Q Consensus 124 ~l~~~~~~~~~~~~-~~-~~~L~~L~l~~~~ 152 (352)
++++|.+.+..+.. .. ..++..+++.+|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88888776543321 11 2334455555543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=9.1e-07 Score=85.39 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=75.9
Q ss_pred CCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCC
Q 018662 208 IKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLND 281 (352)
Q Consensus 208 L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~ 281 (352)
++.|++++|.+.+. | .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+. +.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888877654 2 46678888888888888874 44 477788888888888888764 5677888888888888
Q ss_pred CCCcc-hHHHHHHHhccccCccEeeccCCCccccc
Q 018662 282 NQIES-LESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 282 n~i~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
|.++. +|.. +.....++..+++.+|+..|..
T Consensus 500 N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAA---LGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChH---HhhccccCceEEecCCccccCC
Confidence 88773 3322 2222345677888888877765
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=2.3e-08 Score=87.26 Aligned_cols=281 Identities=19% Similarity=0.085 Sum_probs=184.7
Q ss_pred cCceeecCCCCCcCCCC----CCCCCcccEEEcCCCC-CC--cchhhhhcCCCCcEEeccCC-ccCccccccccccccCC
Q 018662 25 SNTVLDLTSFQLHDLDS----VEFPTNLTELDLTANR-LT--SLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALA 96 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~ 96 (352)
-++.|.++++.-.+..+ ...+++++.|++.+|. ++ +.-..-..|++|++|++..| .+++..... -...++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~--la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY--LAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH--HHHhhh
Confidence 57888888886655543 2457999999999995 43 12222357999999999995 566543221 123689
Q ss_pred CCcEEEccCC-CCCC--CCC-CccccCCcEEEccCCCcccccC---CcccccCcceEEccCCcCCCc----ccccCCCCC
Q 018662 97 GLEELILRDN-KLMK--IPD-VSIFKKLSVFDVSFNEITSSHG---LSNVTDTLKELYVSKNEVPKM----EEIEHFHDL 165 (352)
Q Consensus 97 ~L~~L~l~~~-~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L 165 (352)
+|++|++++| .+++ +.. ..++..++.+...+|.-..... ....+.-+..+++..|...+- ..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 9999999998 4553 333 5666677777777664333221 122244456666556643331 223456788
Q ss_pred cEEEcCCCccC---Cccc-ccCCCCCcEEEccCCc-cceec----CCCCCCCCEEEcCCCcCCCCc----CccccccCcE
Q 018662 166 QILEFGSNRLR---VMEN-LQNLTNLQELWLGRNR-IKVVN----LCGLKCIKKISLQSNRLTSMK----GFEECIALEE 232 (352)
Q Consensus 166 ~~L~l~~~~l~---~~~~-~~~~~~L~~L~l~~~~-l~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~ 232 (352)
+.+..+++... .+.. ..++++|+.+.+..+. +.... -.+++.|+.+++..+...... .-.+|+.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 88888876542 1122 3567899999998886 33332 245788999999888554332 2347899999
Q ss_pred EECCCCCCCCCC-------CCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCcc
Q 018662 233 LYLSHNGISKME-------GLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302 (352)
Q Consensus 233 L~l~~n~l~~~~-------~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~ 302 (352)
+.++.+....-. .......++.+.+++++.... +.+..+++|+.+++-+++-..- +.+..+...+|+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk-~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK-EAISRFATHLPNIK 455 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh-hhhHHHHhhCccce
Confidence 999987543211 234567799999999986543 6778889999999999873321 44566778889988
Q ss_pred EeeccC
Q 018662 303 TIYLEN 308 (352)
Q Consensus 303 ~L~l~~ 308 (352)
+..+-.
T Consensus 456 v~a~~a 461 (483)
T KOG4341|consen 456 VHAYFA 461 (483)
T ss_pred ehhhcc
Confidence 765443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.35 E-value=4e-07 Score=72.14 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=72.8
Q ss_pred EEEcCCCccCCcccccC-CCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC-cCcc-ccccCcEEECCCCCCCC
Q 018662 167 ILEFGSNRLRVMENLQN-LTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM-KGFE-ECIALEELYLSHNGISK 242 (352)
Q Consensus 167 ~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~n~l~~ 242 (352)
.+++.+.++..+..++. .-....+++++|.+... .+..++.|.+|.+.+|.++.+ |.+. .+|+|..|.+.+|.+..
T Consensus 23 e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 34444444433332221 22455677777776665 666777777777777777766 3333 35667777777776554
Q ss_pred ---CCCCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCc
Q 018662 243 ---MEGLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIE 285 (352)
Q Consensus 243 ---~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~ 285 (352)
+..+..++.|++|.+-+|.++.. -.+..+|+|+.||+.+=...
T Consensus 103 l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 103 LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 34556667777777777777655 34556677777777665443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.4e-06 Score=52.15 Aligned_cols=38 Identities=47% Similarity=0.705 Sum_probs=29.4
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCc
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~ 83 (352)
++|++|++++|+|+.+|+.+.+|++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 46788888888888888778888888888888887775
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=5.4e-07 Score=74.65 Aligned_cols=218 Identities=22% Similarity=0.199 Sum_probs=102.6
Q ss_pred cccCCCCcEEEccCCCCCC-----CCC-CccccCCcEEEccCCCcccc-----------cCCcccccCcceEEccCCcCC
Q 018662 92 WDALAGLEELILRDNKLMK-----IPD-VSIFKKLSVFDVSFNEITSS-----------HGLSNVTDTLKELYVSKNEVP 154 (352)
Q Consensus 92 ~~~l~~L~~L~l~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~ 154 (352)
+..+..+..+++++|.+.. +.. +.+-.+|+..+++.-..... .+....|++|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3446778888888887763 222 44556677666664321111 112223555555555555543
Q ss_pred C--c----ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcC-----
Q 018662 155 K--M----EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG----- 223 (352)
Q Consensus 155 ~--~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~----- 223 (352)
. + +.+.....|.+|.+.+|.+..+..-.--..|.+|- .|+ -...-|.|+++....|.+.+-+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--~nK----Kaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--YNK----KAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--HHh----hhccCCCceEEEeccchhccCcHHHHHH
Confidence 3 1 12334444555555555443211100000000000 000 12233556666666665544321
Q ss_pred -ccccccCcEEECCCCCCCC--C-----CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchH-
Q 018662 224 -FEECIALEELYLSHNGISK--M-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE- 288 (352)
Q Consensus 224 -~~~~~~L~~L~l~~n~l~~--~-----~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~- 288 (352)
+..-..|+.+.+.+|.|.. + -++..+.+|+.||+..|.++.. ..+..++.|++|.+.+|-++.-.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 2222456666666666543 1 1244556677777776666533 33445555677777777665311
Q ss_pred -HHHHHH-hccccCccEeeccCCCccccc
Q 018662 289 -SIVEAV-AGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 289 -~~~~~~-~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.....+ -...|+|..|....|..-+.+
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCce
Confidence 111111 122466666666666554443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2e-06 Score=51.52 Aligned_cols=38 Identities=39% Similarity=0.569 Sum_probs=18.7
Q ss_pred CCcEEEcCCCcCCCccc-ccCCCCCCeEEcCCCCCcchH
Q 018662 251 NLHVLDVSSNKLTLVDD-IQNLSRLEDLWLNDNQIESLE 288 (352)
Q Consensus 251 ~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~i~~~~ 288 (352)
+|++|++++|+++.++. +..+++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35555555555555533 555555555555555555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.7e-06 Score=83.60 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCCcEEEcCCCccCCccc----ccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEE
Q 018662 163 HDLQILEFGSNRLRVMEN----LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELY 234 (352)
Q Consensus 163 ~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 234 (352)
.+|++|++++...-.-.+ -..+|.|++|.+.+-.+... -...+++|..||+++.+++...+++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 345555565533211111 13456677776666554443 2345677777777777777666666777777777
Q ss_pred CCCCCCCC---CCCCCCCCCCcEEEcCCCcCCCc--------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccE
Q 018662 235 LSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303 (352)
Q Consensus 235 l~~n~l~~---~~~~~~~~~L~~L~l~~n~l~~~--------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~ 303 (352)
+++=.+.. +..+..+.+|+.||++..+.... +.-..+|.|+.||.+++.+.. +........-|+|+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILEELLNSHPNLQQ 279 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHHHHHHhCccHhh
Confidence 66655544 23456677777777776543221 334457788888888777764 444445455566665
Q ss_pred eecc
Q 018662 304 IYLE 307 (352)
Q Consensus 304 L~l~ 307 (352)
+-+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5433
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2e-07 Score=77.38 Aligned_cols=87 Identities=26% Similarity=0.377 Sum_probs=75.1
Q ss_pred cccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeec
Q 018662 227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306 (352)
Q Consensus 227 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l 306 (352)
+.+.+.|+..+|++.++.....++.|+.|.|+-|+|+.+..+..|++|++|+|..|.|.++++. ..+.++|+|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL--~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL--EYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH--HHHhcCchhhhHhh
Confidence 4567788999999999887888899999999999999998899999999999999999988764 56788999999999
Q ss_pred cCCCccccc
Q 018662 307 ENNPQNLQI 315 (352)
Q Consensus 307 ~~n~~~~~~ 315 (352)
..||..+.-
T Consensus 96 ~ENPCc~~a 104 (388)
T KOG2123|consen 96 DENPCCGEA 104 (388)
T ss_pred ccCCccccc
Confidence 999865554
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=2.4e-06 Score=82.55 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=102.4
Q ss_pred CCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCCCCCCCCCCCCCCcEE
Q 018662 184 LTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKMEGLSTLVNLHVL 255 (352)
Q Consensus 184 ~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L 255 (352)
-.+|++|++++...-.. -...+|+|++|.+++-.+.... ....+|+|..||+++++++.+.+++.+++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35789999988653332 2346899999999997765542 345789999999999999999999999999999
Q ss_pred EcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHH---HHhccccCccEeeccCCCccccc
Q 018662 256 DVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVE---AVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 256 ~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.+.+=.+..- ..+-++++|+.||+|..+-...+..+. +....+|.|+.||.+|.....++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9988887653 567789999999999987655443333 34566899999999998655444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=4.8e-05 Score=68.23 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=83.0
Q ss_pred cccCceeecCCCCCcCCCCCCCCCcccEEEcCCC-CCCcchhhhhcCCCCcEEeccCC-ccCccccccccccccCCCCcE
Q 018662 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~~ 100 (352)
...++.|+++++.++.+| .+|++|++|.+++| .++.+|..+ .++|++|.+++| .+.. . ...|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s----L------P~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG----L------PESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc----c------ccccce
Confidence 478899999999999888 57888999999886 556676544 358999999987 4432 1 245777
Q ss_pred EEccCCCCCCCCCCccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCcccccCCCCCcEEEcCCC
Q 018662 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (352)
Q Consensus 101 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (352)
|++..+....++. -.++|+.|.+.++......... ...++|++|.+++|.....+. .-..+|+.|.+..+
T Consensus 117 L~L~~n~~~~L~~--LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKN--VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCccccc--CcchHhheeccccccccccccccccCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence 8877655443321 1125667766543211111111 124678888888776443211 12256777777654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.88 E-value=8.2e-06 Score=67.48 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=40.0
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCC--CCC-cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN--RLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~--~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 101 (352)
.+..+.+.+..++++...+.+++|+.|.++.| ++. .++.....+|+|++|++++|++..+ +.+..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--stl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--STLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--cccchhhhhcchhhh
Confidence 34445555555555554555555555555555 333 3333334445555555555554431 122333344445555
Q ss_pred EccCCCCCC
Q 018662 102 ILRDNKLMK 110 (352)
Q Consensus 102 ~l~~~~l~~ 110 (352)
++..|....
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 555444443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=1.4e-06 Score=64.76 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=43.1
Q ss_pred CcccEEEcCCCCCCcchhhhh-cCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662 46 TNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L 123 (352)
.+|+..++++|.+.++|..|. +++-++.|++++|.+.+. +..+..++.|+.|+++.|.+...|. +..+.++-.|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv----PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV----PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc----hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 345555555555555555543 344555555555555552 2234445555555555555555444 3334555555
Q ss_pred EccCCCcccc
Q 018662 124 DVSFNEITSS 133 (352)
Q Consensus 124 ~l~~~~~~~~ 133 (352)
+..+|....+
T Consensus 129 ds~~na~~ei 138 (177)
T KOG4579|consen 129 DSPENARAEI 138 (177)
T ss_pred cCCCCccccC
Confidence 5555544443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=8.1e-07 Score=73.89 Aligned_cols=100 Identities=25% Similarity=0.281 Sum_probs=51.6
Q ss_pred CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCC
Q 018662 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDN 282 (352)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n 282 (352)
.+.+.|+.+++.+.++.....+|.|+.|.|+-|.|+.+..+..+.+|++|.|..|.|.++ ..+.++|+|+.|.|..|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 344455555555555444444555555555555555555555555555555555555554 34455666666666655
Q ss_pred CCc--chHHHHHHHhccccCccEee
Q 018662 283 QIE--SLESIVEAVAGSRETLTTIY 305 (352)
Q Consensus 283 ~i~--~~~~~~~~~~~~~~~L~~L~ 305 (352)
+=. .=+..-...+.-+|+|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 522 11112223334455565553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.70 E-value=2.1e-05 Score=65.14 Aligned_cols=101 Identities=26% Similarity=0.274 Sum_probs=60.8
Q ss_pred CCCCEEEcCCCcCCCCcCccccccCcEEECCCC--CCCC-CCC-CCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEE
Q 018662 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHN--GISK-MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW 278 (352)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~-~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~ 278 (352)
..|+.+++.+..++....+..+|+|+.|.++.| ++.. ++. ...+++|+++++++|++..+ ..+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 344445555555555555566677777777777 3322 222 23447777777777777655 4455566677777
Q ss_pred cCCCCCcchHHHHHHHhccccCccEeec
Q 018662 279 LNDNQIESLESIVEAVAGSRETLTTIYL 306 (352)
Q Consensus 279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l 306 (352)
+.+|..+.+...-...+.-+++|+.|+-
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccc
Confidence 7777766655444555666677776653
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=3.6e-06 Score=62.69 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=77.0
Q ss_pred cccEEEcCCCCCCcchhh---hhcCCCCcEEeccCCccCccccccccccc-cCCCCcEEEccCCCCCCCCC-CccccCCc
Q 018662 47 NLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNLIDDAAIEPISRWD-ALAGLEELILRDNKLMKIPD-VSIFKKLS 121 (352)
Q Consensus 47 ~L~~L~l~~~~l~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~-~~~~~~L~ 121 (352)
.+..++++.|.+--++.. +.+...|+..++++|.++.. +..|. ..+..+.+++++|.+..+|. +..++.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f----p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF----PKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC----CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 355677888877655554 45566778889999988873 33443 35578888999999998887 88888999
Q ss_pred EEEccCCCcccccCCcccccCcceEEccCCcCCCc
Q 018662 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156 (352)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 156 (352)
.++++.|++...+.....+.++..|+..++....+
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence 99999998887766555566777777776665553
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.0006 Score=61.35 Aligned_cols=131 Identities=11% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCcccccCCCCCcEEEccCC-ccceecCCCCCCCCEEEcCCCc
Q 018662 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRN-RIKVVNLCGLKCIKKISLQSNR 217 (352)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~~~ 217 (352)
+..++.|++++|.+..++ ....+|+.|.+.+|. +...+.. -.++|+.|.+.+| .+.. -.++|+.|++..+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~s----LP~sLe~L~L~~n~ 123 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISG----LPESVRSLEIKGSA 123 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccc----cccccceEEeCCCC
Confidence 356667777766655543 223356666666532 2222210 1235566666555 2221 12345555555443
Q ss_pred CCCCcCccccccCcEEECCCCCCC---CCCCCCCCCCCcEEEcCCCcCCCcc-cccCCCCCCeEEcCCC
Q 018662 218 LTSMKGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDN 282 (352)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n 282 (352)
...++.+ +++|+.|.+.+++.. .++ ..-+++|++|++.+|.....+ .+ ..+|+.|.++.+
T Consensus 124 ~~~L~~L--PssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 124 TDSIKNV--PNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIE 187 (426)
T ss_pred CcccccC--cchHhheeccccccccccccc-cccCCcccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence 3322211 234555554332110 011 012245666666555533321 12 135555665544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.0081 Score=45.32 Aligned_cols=77 Identities=25% Similarity=0.492 Sum_probs=29.0
Q ss_pred cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCC
Q 018662 201 NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL 274 (352)
Q Consensus 201 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L 274 (352)
.+..+.+++.+.+..+ +..++ .+..++.++.+.+.. .+..+ ..+..+++|+.+.+..+ +..+ ..+..+ +|
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 4444445555555443 33332 344454555555543 22222 12344555555555443 3322 334444 55
Q ss_pred CeEEcCC
Q 018662 275 EDLWLND 281 (352)
Q Consensus 275 ~~L~l~~ 281 (352)
+.+.+..
T Consensus 106 ~~i~~~~ 112 (129)
T PF13306_consen 106 KEINIPS 112 (129)
T ss_dssp -EEE-TT
T ss_pred eEEEECC
Confidence 5555544
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.64 E-value=0.0075 Score=45.53 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=10.3
Q ss_pred cccEEEcCCCCCCcchhh-hhcCCCCcEEeccC
Q 018662 47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQ 78 (352)
Q Consensus 47 ~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~ 78 (352)
+|+.+.+.. .+..++.. |..+++|+.+.+..
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 444444442 23334332 44444455554444
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.46 E-value=0.00033 Score=65.90 Aligned_cols=227 Identities=25% Similarity=0.224 Sum_probs=114.0
Q ss_pred hcCCCCcEEeccCC-ccCccccccccccccCCCCcEEEccCC-C-CCCCC-----CCccccCCcEEEccCCC-ccccc--
Q 018662 66 SHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEELILRDN-K-LMKIP-----DVSIFKKLSVFDVSFNE-ITSSH-- 134 (352)
Q Consensus 66 ~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~-~-l~~l~-----~~~~~~~L~~L~l~~~~-~~~~~-- 134 (352)
..++.|+.+.+.++ .+.... .......++.|+.|+++++ . ....+ ....+++|++|+++++. ++...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 34678888888776 343321 1123346778888888763 2 11111 13446778888888777 33321
Q ss_pred CCcccccCcceEEccCCc-CCC--c-ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCccceecCCCCC
Q 018662 135 GLSNVTDTLKELYVSKNE-VPK--M-EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVVNLCGLK 206 (352)
Q Consensus 135 ~~~~~~~~L~~L~l~~~~-~~~--~-~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 206 (352)
.....+++|++|.+.+|. ++. + .....++.|++++++++... .......+++++.+.+.... .+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-------~c~ 335 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-------GCP 335 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------CCc
Confidence 222236788888877776 333 2 22456777888888877542 11123446666665543321 133
Q ss_pred CCCEEEcCCCcCC---CC--cCccccccCcEEECCCCCCCCCC---CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEE
Q 018662 207 CIKKISLQSNRLT---SM--KGFEECIALEELYLSHNGISKME---GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLW 278 (352)
Q Consensus 207 ~L~~L~l~~~~~~---~~--~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 278 (352)
.++.+.+.+.... .. -....++.++.+.+.++...... .+.+++.|. ..+. .......+++.|+
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~-------~~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE-------LRLCRSDSLRVLN 407 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH-------HHhccCCccceEe
Confidence 4444444433221 11 12456777777777766533321 233334331 1110 0111112266777
Q ss_pred cCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 279 LNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
++.+........ ......+..+..+++.+++
T Consensus 408 l~~~~~~t~~~l-~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 408 LSDCRLVTDKGL-RCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cccCccccccch-HHHhhhhhccccCCccCcc
Confidence 776664332211 1111115666666666665
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0036 Score=31.07 Aligned_cols=19 Identities=53% Similarity=0.632 Sum_probs=11.2
Q ss_pred ccEEEcCCCCCCcchhhhh
Q 018662 48 LTELDLTANRLTSLDSRIS 66 (352)
Q Consensus 48 L~~L~l~~~~l~~l~~~~~ 66 (352)
|++|++++|.++.+|..|.
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666665543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.74 E-value=0.019 Score=26.35 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=5.0
Q ss_pred CCCeEEcCCCCCcc
Q 018662 273 RLEDLWLNDNQIES 286 (352)
Q Consensus 273 ~L~~L~l~~n~i~~ 286 (352)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.67 E-value=0.0011 Score=61.78 Aligned_cols=168 Identities=27% Similarity=0.268 Sum_probs=85.4
Q ss_pred CCcEEEccCCCccccc-----CCcccccCcceEEccCCcCCCc------ccccCC-CCCcEEEcCCCccCCc------cc
Q 018662 119 KLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPKM------EEIEHF-HDLQILEFGSNRLRVM------EN 180 (352)
Q Consensus 119 ~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~-~~L~~L~l~~~~l~~~------~~ 180 (352)
.+.++.+.+|.+.... ......++|+.|++++|.+... ..+... ..++++++..|.+... ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777888888776532 1222366788888888887752 123333 5566677776665422 22
Q ss_pred ccCCCCCcEEEccCCcccee-------cC----CCCCCCCEEEcCCCcCCCCc------Ccccccc-CcEEECCCCCCCC
Q 018662 181 LQNLTNLQELWLGRNRIKVV-------NL----CGLKCIKKISLQSNRLTSMK------GFEECIA-LEELYLSHNGISK 242 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~-------~~----~~~~~L~~L~l~~~~~~~~~------~~~~~~~-L~~L~l~~n~l~~ 242 (352)
+...++++.++++.|.+... .+ ....+++++.+.++.++... .+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44566777777777665432 11 12344555555555444321 1222222 3335555554443
Q ss_pred C------CCCCCC-CCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcc
Q 018662 243 M------EGLSTL-VNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 243 ~------~~~~~~-~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~ 286 (352)
. +.+..+ ..++.+++..|.+++. ..+..++.++++.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 123333 3445555555555432 223344455555555555543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.49 E-value=0.049 Score=51.16 Aligned_cols=127 Identities=23% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCCCCcEEEccCCc-cce--e--cCCCCCCCCEEEcCCC-cC-CCC-----cCccccccCcEEECCCCC-CCCC--CCC-
Q 018662 183 NLTNLQELWLGRNR-IKV--V--NLCGLKCIKKISLQSN-RL-TSM-----KGFEECIALEELYLSHNG-ISKM--EGL- 246 (352)
Q Consensus 183 ~~~~L~~L~l~~~~-l~~--~--~~~~~~~L~~L~l~~~-~~-~~~-----~~~~~~~~L~~L~l~~n~-l~~~--~~~- 246 (352)
.++.|+.+.+.++. +.. . ....++.|+.++++++ .. ... .....+++|+.++++++. +++. ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46777777776652 332 1 4456778888888763 11 111 123456777888887776 4442 221
Q ss_pred CCCCCCcEEEcCCCc-CCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 247 STLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 247 ~~~~~L~~L~l~~n~-l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
..+++|++|.+.++. +++. .....++.|++|++++|....- ........+|++++.|.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence 236678888876666 5443 3445677788888887764421 2233335557777776555543
No 74
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=91.61 E-value=0.37 Score=44.89 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=71.7
Q ss_pred cccccCcEEECCCCCCCCCCCC----CCCCCCcEEEcCCC--cCCCcccccC--CCCCCeEEcCCCCCcch----HHHHH
Q 018662 225 EECIALEELYLSHNGISKMEGL----STLVNLHVLDVSSN--KLTLVDDIQN--LSRLEDLWLNDNQIESL----ESIVE 292 (352)
Q Consensus 225 ~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n--~l~~~~~~~~--~~~L~~L~l~~n~i~~~----~~~~~ 292 (352)
.+.|.+..+.+++|++..++.+ ...++|..|+|++| .+.....++. ...|++|-+.||++..- .+.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3567788888999888776543 35578999999999 5544433332 24689999999997642 23445
Q ss_pred HHhccccCccEeec---cC---------CCccccccccCCccHHHHHHHHHHhhhh
Q 018662 293 AVAGSRETLTTIYL---EN---------NPQNLQIILLPSDKFSQIYSRLILMYFF 336 (352)
Q Consensus 293 ~~~~~~~~L~~L~l---~~---------n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (352)
++.+.+|+|..||= .- -+..++-..++.+....+...|...|+-
T Consensus 295 ~i~~~FPKL~~LDG~ev~~~~~d~~~~~~~~p~k~~ff~~~~l~~LV~~Fl~~y~~ 350 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQPEVIDINASETPMPCKQNFFGSEELKQLVLQFLQQYYK 350 (585)
T ss_pred HHHHhcchheeecCcccCccccccccccCCcchhhcccCchHHHHHHHHHHHHHHH
Confidence 66677899988751 11 2233333344555566666666666553
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.53 E-value=0.0044 Score=50.85 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcE
Q 018662 44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV 122 (352)
Q Consensus 44 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~ 122 (352)
..++.+.||++.+++..+...|+.++.|..|+++.+.+.- .+.++.....++.++...|+.+..|. +...+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~----~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF----LPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh----ChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 3466777777777766666666667777777777776654 33445555666667777777776665 666777777
Q ss_pred EEccCCCcc
Q 018662 123 FDVSFNEIT 131 (352)
Q Consensus 123 L~l~~~~~~ 131 (352)
+++-++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777653
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.48 E-value=0.0022 Score=59.72 Aligned_cols=186 Identities=23% Similarity=0.248 Sum_probs=108.1
Q ss_pred CcEEEccCCCCCCCC------CCccccCCcEEEccCCCcccccC-----Cccc-ccCcceEEccCCcCCCc------ccc
Q 018662 98 LEELILRDNKLMKIP------DVSIFKKLSVFDVSFNEITSSHG-----LSNV-TDTLKELYVSKNEVPKM------EEI 159 (352)
Q Consensus 98 L~~L~l~~~~l~~l~------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~------~~~ 159 (352)
+..+.+.+|.+..-. .+...+.|..|++++|.+..... .... -..++.|.+..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777766422 14556777788888887763211 1111 14556666766666552 235
Q ss_pred cCCCCCcEEEcCCCccC------Cccccc----CCCCCcEEEccCCcccee-------cCCCCCC-CCEEEcCCCcCCCC
Q 018662 160 EHFHDLQILEFGSNRLR------VMENLQ----NLTNLQELWLGRNRIKVV-------NLCGLKC-IKKISLQSNRLTSM 221 (352)
Q Consensus 160 ~~~~~L~~L~l~~~~l~------~~~~~~----~~~~L~~L~l~~~~l~~~-------~~~~~~~-L~~L~l~~~~~~~~ 221 (352)
.....++.+++..|.+. ....+. ...+++++.+.++.+... .+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55667777777777663 111222 355677777777766544 3344444 55577777776644
Q ss_pred ------cCcccc-ccCcEEECCCCCCCCCC------CCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCC
Q 018662 222 ------KGFEEC-IALEELYLSHNGISKME------GLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDN 282 (352)
Q Consensus 222 ------~~~~~~-~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n 282 (352)
+.+..+ +.++.+++++|.+++-. .+..++.++.+.+++|.+... ........+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 234444 56778888888776632 245556788888888877654 22333344455555544
Q ss_pred C
Q 018662 283 Q 283 (352)
Q Consensus 283 ~ 283 (352)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.90 E-value=0.15 Score=26.20 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=6.9
Q ss_pred CCCeEEcCCCCCcch
Q 018662 273 RLEDLWLNDNQIESL 287 (352)
Q Consensus 273 ~L~~L~l~~n~i~~~ 287 (352)
+|+.|++++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.90 E-value=0.15 Score=26.20 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=6.9
Q ss_pred CCCeEEcCCCCCcch
Q 018662 273 RLEDLWLNDNQIESL 287 (352)
Q Consensus 273 ~L~~L~l~~n~i~~~ 287 (352)
+|+.|++++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 344444444444443
No 79
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=90.19 E-value=3.3 Score=38.16 Aligned_cols=260 Identities=17% Similarity=0.062 Sum_probs=117.7
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-c-chhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-S-LDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
..++++++.+.+..-.++.++...--++++.|..+ + +..- -..=..+.+++++.|...+..+..........-++.
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ 245 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFK 245 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhc
Confidence 45666666666655444444333333555566544 1 1110 112235777888887766654433333333444666
Q ss_pred EEccCCCCC--C-CCC--CccccCCcEEEccCCCccc-----cc----CCcccccCcceEEccCCcCCC--ccc----cc
Q 018662 101 LILRDNKLM--K-IPD--VSIFKKLSVFDVSFNEITS-----SH----GLSNVTDTLKELYVSKNEVPK--MEE----IE 160 (352)
Q Consensus 101 L~l~~~~l~--~-l~~--~~~~~~L~~L~l~~~~~~~-----~~----~~~~~~~~L~~L~l~~~~~~~--~~~----~~ 160 (352)
++.+...+. . +.. ....+++...+++.|.... .. ..+..-.++ +|++.++.... +.. ..
T Consensus 246 ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla 324 (553)
T KOG4242|consen 246 LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLA 324 (553)
T ss_pred ccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccc
Confidence 666665544 1 112 2334466666666664432 11 112223344 55555554433 100 00
Q ss_pred CC--CCCcEEEcCCCccC---CcccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCC---cC----
Q 018662 161 HF--HDLQILEFGSNRLR---VMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSM---KG---- 223 (352)
Q Consensus 161 ~~--~~L~~L~l~~~~l~---~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~---~~---- 223 (352)
.- ..=-.+++..|..+ .......-..++++..+.|..++. .....++.+.+++.+..-..+ +.
T Consensus 325 ~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~ 404 (553)
T KOG4242|consen 325 ENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPP 404 (553)
T ss_pred cccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchh
Confidence 00 00111233333332 112222223466777777665554 233345566666654322111 00
Q ss_pred c----cccccCcEEECCCCCCCCC-----CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCc
Q 018662 224 F----EECIALEELYLSHNGISKM-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIE 285 (352)
Q Consensus 224 ~----~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~ 285 (352)
+ ...--+..+.++.+....- ..+..-+.+..|++++|..... .......+++.+..+.|..+
T Consensus 405 v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 405 VSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 0 0112244555555555432 1234456677777777776543 12223335666666666544
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.07 E-value=0.067 Score=43.10 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=42.2
Q ss_pred CcEEECCCCCCCC--CCCCCCCCCCcEEEcCCCcC-CCc--cccc-CCCCCCeEEcCCCC-CcchHHHHHHHhccccCcc
Q 018662 230 LEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKL-TLV--DDIQ-NLSRLEDLWLNDNQ-IESLESIVEAVAGSRETLT 302 (352)
Q Consensus 230 L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l-~~~--~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~~~~~~~L~ 302 (352)
++.++-+++.|.. +.-+..++.++.|.+.+++- .+. +.+. -.++|+.|++++|+ |++ ...+.+..+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech---hHHHHHHHhhhhH
Confidence 4455555544432 33445555666666666542 222 2222 34677777777765 554 2234455667777
Q ss_pred EeeccCCC
Q 018662 303 TIYLENNP 310 (352)
Q Consensus 303 ~L~l~~n~ 310 (352)
.|.+.+=|
T Consensus 180 ~L~l~~l~ 187 (221)
T KOG3864|consen 180 RLHLYDLP 187 (221)
T ss_pred HHHhcCch
Confidence 77777665
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=0.16 Score=41.01 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=48.1
Q ss_pred CCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC-CcchHHHHHHHhccccCccEeeccCCCccccccccC
Q 018662 251 NLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGSRETLTTIYLENNPQNLQIILLP 319 (352)
Q Consensus 251 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 319 (352)
.++.++-++..|..+ +.+..++.++.|.+.+|. +.++ .+..+....++|+.|+|++|| .|++..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L~~l~~~~~~L~~L~lsgC~---rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CLERLGGLAPSLQDLDLSGCP---RITDGG 168 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HHHHhcccccchheeeccCCC---eechhH
Confidence 478899999988655 778899999999999998 3322 223334456999999999999 664444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.48 E-value=0.57 Score=23.43 Aligned_cols=15 Identities=47% Similarity=0.559 Sum_probs=8.0
Q ss_pred CCCCeEEcCCCCCcc
Q 018662 272 SRLEDLWLNDNQIES 286 (352)
Q Consensus 272 ~~L~~L~l~~n~i~~ 286 (352)
++|+.|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.74 E-value=0.023 Score=46.74 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=47.8
Q ss_pred hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCc
Q 018662 65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143 (352)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 143 (352)
+..+...+.|+++.+++.. .-..|+.++.|..|+++.+.+.-+|. +.....+++++...|.....+-.....+++
T Consensus 38 i~~~kr~tvld~~s~r~vn----~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN----LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHh----hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 4455566666666665544 22334455566666666666665554 555555666666666555555444445566
Q ss_pred ceEEccCCcC
Q 018662 144 KELYVSKNEV 153 (352)
Q Consensus 144 ~~L~l~~~~~ 153 (352)
++++..++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666655553
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=85.19 E-value=0.62 Score=51.67 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=30.9
Q ss_pred EcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
||++|+|+.++. ..+..+++|+.|+|++|||.|+|.
T Consensus 1 DLSnN~LstLp~---g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEE---GICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccCh---HHhccCCCceEEEeeCCccccccc
Confidence 588999998874 466778999999999999999993
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.02 E-value=0.63 Score=23.97 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=10.8
Q ss_pred CcccEEEcCCCCCCcchh
Q 018662 46 TNLTELDLTANRLTSLDS 63 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~ 63 (352)
++|++|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 455666666666666554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.05 E-value=0.76 Score=23.73 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=11.1
Q ss_pred CCCCeEEcCCCCCcchH
Q 018662 272 SRLEDLWLNDNQIESLE 288 (352)
Q Consensus 272 ~~L~~L~l~~n~i~~~~ 288 (352)
.+|+.|++++|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45667777777776554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.47 E-value=1.8 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=9.8
Q ss_pred CCCCeEEcCCCCCcc
Q 018662 272 SRLEDLWLNDNQIES 286 (352)
Q Consensus 272 ~~L~~L~l~~n~i~~ 286 (352)
++|++|++++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356677777777664
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.47 E-value=2 Score=40.31 Aligned_cols=66 Identities=26% Similarity=0.332 Sum_probs=47.3
Q ss_pred CCCCCCcEEEcCCCcCCCcccc----cCCCCCCeEEcCCC--CCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 247 STLVNLHVLDVSSNKLTLVDDI----QNLSRLEDLWLNDN--QIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n--~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
...+.+..+++++|++..++.+ ...|+|+.|+|++| .+....+. . ......|++|-+.|||+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~--K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-D--KLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-h--hhcCCCHHHeeecCCccccch
Confidence 3557789999999998877333 35689999999999 66653322 1 223477999999999954443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.84 E-value=14 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=7.1
Q ss_pred CCcEEeccCCccCcc
Q 018662 70 NLKKLSLRQNLIDDA 84 (352)
Q Consensus 70 ~L~~L~l~~~~~~~~ 84 (352)
.+++++++.|.+.+.
T Consensus 166 r~r~~dls~npi~dk 180 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDK 180 (553)
T ss_pred hhhhhccCCCccccc
Confidence 344555555544443
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.28 E-value=4 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=10.1
Q ss_pred ccCccEeeccCCC
Q 018662 298 RETLTTIYLENNP 310 (352)
Q Consensus 298 ~~~L~~L~l~~n~ 310 (352)
|++|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5678888888886
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=58.16 E-value=19 Score=21.07 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=16.7
Q ss_pred ccccCceeecCCCCCcCCCCCCCCCcccEEEcC
Q 018662 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLT 54 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 54 (352)
.|.+++.|.+.+.--..+....+|++|++|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 345566666644333334444555566665544
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.89 E-value=47 Score=38.14 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=16.5
Q ss_pred ecCCCCCcCCCCC--CCCCcccEEEcCCCCCC
Q 018662 30 DLTSFQLHDLDSV--EFPTNLTELDLTANRLT 59 (352)
Q Consensus 30 ~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~ 59 (352)
||++|+|+.++.. ..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4556666666542 22355666666666554
Done!