Query 018662
Match_columns 352
No_of_seqs 204 out of 3465
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 8.6E-35 2.9E-39 260.5 29.2 305 21-350 41-346 (347)
2 4fmz_A Internalin; leucine ric 100.0 7.4E-33 2.5E-37 247.9 28.6 281 20-312 62-346 (347)
3 1o6v_A Internalin A; bacterial 100.0 2E-32 6.7E-37 254.7 29.0 281 21-313 65-367 (466)
4 1o6v_A Internalin A; bacterial 100.0 1.5E-32 5.3E-37 255.4 28.0 280 23-313 45-345 (466)
5 2id5_A Lingo-1, leucine rich r 100.0 2.1E-31 7E-36 248.6 24.5 288 22-315 30-336 (477)
6 3o6n_A APL1; leucine-rich repe 100.0 7.5E-31 2.5E-35 238.6 25.7 276 24-310 45-329 (390)
7 2id5_A Lingo-1, leucine rich r 100.0 4.9E-31 1.7E-35 246.1 24.2 304 26-350 13-333 (477)
8 3v47_A TOLL-like receptor 5B a 100.0 5.1E-31 1.8E-35 244.5 24.0 288 22-315 28-411 (455)
9 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-30 1.4E-34 237.6 26.2 275 20-313 38-353 (457)
10 3v47_A TOLL-like receptor 5B a 100.0 1.1E-30 3.7E-35 242.3 20.8 306 25-351 11-409 (455)
11 3o6n_A APL1; leucine-rich repe 100.0 3.1E-30 1.1E-34 234.5 23.4 284 17-315 62-355 (390)
12 3t6q_A CD180 antigen; protein- 100.0 1E-29 3.5E-34 244.1 26.8 291 25-325 255-570 (606)
13 3oja_B Anopheles plasmodium-re 100.0 9.7E-30 3.3E-34 243.5 25.8 276 24-310 51-335 (597)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4.2E-34 239.1 24.8 103 24-132 21-129 (520)
15 3t6q_A CD180 antigen; protein- 100.0 1.2E-29 4E-34 243.6 24.7 215 96-313 278-514 (606)
16 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.7E-34 243.1 23.2 283 18-315 69-361 (597)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-29 1.2E-33 238.2 26.4 291 23-327 51-522 (562)
18 1xku_A Decorin; proteoglycan, 100.0 7.9E-29 2.7E-33 220.1 26.8 281 23-310 30-330 (330)
19 4eco_A Uncharacterized protein 100.0 9.2E-30 3.1E-34 245.1 22.2 227 16-243 198-472 (636)
20 3vq2_A TLR4, TOLL-like recepto 100.0 7.3E-30 2.5E-34 245.1 21.1 110 20-132 52-167 (606)
21 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-29 2.9E-33 235.0 28.1 152 161-315 332-513 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.9E-29 2.7E-33 233.6 26.1 290 18-315 39-484 (520)
23 4ecn_A Leucine-rich repeat pro 100.0 3.7E-29 1.3E-33 245.7 24.7 227 16-243 440-712 (876)
24 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-29 1.5E-33 239.7 24.6 154 181-351 395-559 (606)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-29 2.3E-33 236.2 25.2 264 18-287 70-512 (562)
26 3rgz_A Protein brassinosteroid 100.0 7.9E-30 2.7E-34 250.8 18.7 60 23-82 293-356 (768)
27 2z63_A TOLL-like receptor 4, v 100.0 8.4E-29 2.9E-33 236.0 24.5 178 141-324 347-540 (570)
28 4eco_A Uncharacterized protein 100.0 3.9E-29 1.3E-33 240.7 22.3 288 16-311 239-578 (636)
29 3bz5_A Internalin-J, INLJ; leu 100.0 7.8E-28 2.7E-32 222.4 29.2 283 19-315 59-390 (457)
30 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-28 5.3E-33 218.4 23.0 279 24-310 33-331 (332)
31 3rgz_A Protein brassinosteroid 100.0 1.4E-29 4.7E-34 249.1 17.7 289 21-315 244-554 (768)
32 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-28 4.5E-33 233.6 23.5 306 24-351 26-511 (549)
33 1jl5_A Outer protein YOPM; leu 100.0 1.1E-27 3.6E-32 221.4 28.5 261 24-313 111-371 (454)
34 2z63_A TOLL-like receptor 4, v 100.0 6.5E-29 2.2E-33 236.7 20.8 134 202-352 392-533 (570)
35 4ecn_A Leucine-rich repeat pro 100.0 4.5E-28 1.5E-32 238.1 27.2 258 22-281 489-785 (876)
36 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-27 8.3E-32 230.5 28.9 294 18-317 266-627 (680)
37 1xku_A Decorin; proteoglycan, 100.0 1.6E-27 5.4E-32 211.7 23.3 283 46-347 31-329 (330)
38 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-27 1.1E-31 229.8 27.4 311 24-350 248-622 (680)
39 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-27 1.3E-31 227.2 27.3 130 22-154 50-186 (635)
40 3g06_A SSPH2 (leucine-rich rep 100.0 1.3E-26 4.4E-31 220.7 30.2 260 25-315 41-300 (622)
41 1jl5_A Outer protein YOPM; leu 100.0 2.1E-26 7.3E-31 212.6 30.3 279 26-351 73-371 (454)
42 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5E-32 212.2 21.2 279 46-347 33-330 (332)
43 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-27 1.8E-31 232.9 23.1 283 22-310 22-373 (844)
44 3zyj_A Leucine-rich repeat-con 100.0 2E-26 6.8E-31 212.7 24.2 244 25-315 44-295 (440)
45 3j0a_A TOLL-like receptor 5; m 99.9 9.5E-27 3.3E-31 231.1 21.7 304 26-350 6-375 (844)
46 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.3E-32 212.5 15.8 265 25-316 32-318 (353)
47 3zyi_A Leucine-rich repeat-con 99.9 3.6E-26 1.2E-30 211.6 24.0 244 25-315 55-306 (452)
48 4g8a_A TOLL-like receptor 4; l 99.9 3.7E-26 1.3E-30 220.2 24.7 146 26-175 33-185 (635)
49 3g06_A SSPH2 (leucine-rich rep 99.9 2E-24 6.7E-29 205.7 29.1 239 24-288 61-300 (622)
50 2z66_A Variable lymphocyte rec 99.9 2.2E-25 7.6E-30 195.8 18.8 239 26-286 9-262 (306)
51 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-26 7.5E-31 203.1 10.4 233 67-309 32-272 (317)
52 1ogq_A PGIP-2, polygalacturona 99.9 3E-25 1E-29 195.4 13.6 239 46-315 50-307 (313)
53 2z66_A Variable lymphocyte rec 99.9 2.2E-24 7.7E-29 189.3 18.5 244 49-325 10-271 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-24 1.2E-28 186.2 19.4 217 26-286 13-239 (285)
55 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.9E-29 203.0 16.5 237 70-316 35-286 (487)
56 1ogq_A PGIP-2, polygalacturona 99.9 5.6E-25 1.9E-29 193.7 11.1 220 69-317 50-286 (313)
57 1z7x_W Ribonuclease inhibitor; 99.9 4E-27 1.4E-31 218.7 -4.3 170 142-311 200-410 (461)
58 2z80_A TOLL-like receptor 2, v 99.9 1.4E-23 4.9E-28 187.9 16.7 247 23-288 51-317 (353)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.8E-27 175.5 22.9 214 72-315 14-241 (285)
60 1wwl_A Monocyte differentiatio 99.9 2.2E-24 7.5E-29 189.9 10.0 238 24-286 43-310 (312)
61 1z7x_W Ribonuclease inhibitor; 99.9 3E-25 1E-29 206.0 4.2 325 16-350 20-411 (461)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-24 1.8E-28 187.9 11.6 233 71-315 12-253 (317)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-24 6E-29 190.5 8.4 239 46-313 43-310 (312)
64 1h6u_A Internalin H; cell adhe 99.9 3.3E-23 1.1E-27 181.9 16.3 193 65-263 37-230 (308)
65 3zyj_A Leucine-rich repeat-con 99.9 3.4E-22 1.2E-26 184.3 22.8 215 23-240 63-291 (440)
66 1h6u_A Internalin H; cell adhe 99.9 1E-22 3.6E-27 178.7 18.3 211 72-288 22-233 (308)
67 3zyi_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 184.9 22.4 217 22-241 73-303 (452)
68 4fcg_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 178.8 18.6 227 46-288 81-317 (328)
69 4fcg_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 177.0 18.3 215 24-263 81-314 (328)
70 3oja_A Leucine-rich immune mol 99.9 1.6E-22 5.5E-27 188.4 14.3 213 94-315 32-253 (487)
71 1p9a_G Platelet glycoprotein I 99.9 2.5E-21 8.5E-26 168.4 18.8 198 91-315 5-211 (290)
72 2o6q_A Variable lymphocyte rec 99.9 2E-20 6.9E-25 161.1 23.8 197 96-316 16-222 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 7.6E-21 2.6E-25 164.3 20.2 216 27-264 10-238 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 6E-21 2E-25 164.9 17.7 197 96-316 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 2.9E-20 9.9E-25 160.1 21.8 191 24-218 16-217 (270)
76 3rfs_A Internalin B, repeat mo 99.9 8.9E-21 3E-25 163.5 15.8 210 70-315 20-238 (272)
77 3rfs_A Internalin B, repeat mo 99.9 3.8E-20 1.3E-24 159.5 19.7 174 140-316 40-222 (272)
78 1p9a_G Platelet glycoprotein I 99.8 8E-20 2.7E-24 158.8 19.9 149 21-175 7-160 (290)
79 3ogk_B Coronatine-insensitive 99.8 1.2E-21 4.2E-26 187.3 8.7 259 46-311 192-500 (592)
80 3ogk_B Coronatine-insensitive 99.8 5.1E-22 1.8E-26 189.9 4.4 293 19-314 187-528 (592)
81 2ca6_A RAN GTPase-activating p 99.8 2.9E-22 1E-26 181.6 1.8 111 205-315 186-319 (386)
82 2xwt_C Thyrotropin receptor; s 99.8 9.2E-20 3.1E-24 154.0 16.5 197 36-260 23-236 (239)
83 4glp_A Monocyte differentiatio 99.8 3.5E-20 1.2E-24 162.9 14.0 101 205-312 196-307 (310)
84 1h6t_A Internalin B; cell adhe 99.8 5.8E-20 2E-24 159.8 14.6 188 70-263 25-213 (291)
85 1h6t_A Internalin B; cell adhe 99.8 9E-20 3.1E-24 158.6 15.3 188 48-242 26-214 (291)
86 4glp_A Monocyte differentiatio 99.8 1.4E-19 4.7E-24 159.0 13.6 218 46-265 64-309 (310)
87 2xwt_C Thyrotropin receptor; s 99.8 4.7E-19 1.6E-23 149.7 16.1 191 22-215 29-235 (239)
88 1m9s_A Internalin B; cell inva 99.8 8.2E-20 2.8E-24 173.7 12.0 189 47-242 22-211 (605)
89 4ay9_X Follicle-stimulating ho 99.8 1.9E-18 6.4E-23 154.4 18.7 231 26-260 11-256 (350)
90 3m19_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 145.5 19.1 170 24-197 14-191 (251)
91 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.8E-23 165.9 17.8 189 26-221 23-212 (605)
92 2p1m_B Transport inhibitor res 99.8 1E-20 3.4E-25 181.0 2.7 107 21-128 102-221 (594)
93 3goz_A Leucine-rich repeat-con 99.8 7.7E-20 2.6E-24 164.2 8.2 102 186-287 168-299 (362)
94 3goz_A Leucine-rich repeat-con 99.8 1.4E-19 4.6E-24 162.6 9.5 129 186-314 139-299 (362)
95 2ca6_A RAN GTPase-activating p 99.8 3.8E-20 1.3E-24 167.7 5.1 259 52-310 15-341 (386)
96 1xeu_A Internalin C; cellular 99.8 2.5E-19 8.4E-24 153.5 9.7 170 116-287 17-187 (263)
97 3m19_A Variable lymphocyte rec 99.8 8.1E-18 2.8E-22 143.1 18.1 172 119-314 15-194 (251)
98 2ast_B S-phase kinase-associat 99.8 5.7E-19 2E-23 156.8 8.6 194 116-315 91-309 (336)
99 3cvr_A Invasion plasmid antige 99.8 2E-17 7E-22 155.7 18.7 177 96-286 59-244 (571)
100 3cvr_A Invasion plasmid antige 99.8 4.1E-17 1.4E-21 153.6 20.7 179 69-265 59-245 (571)
101 1xeu_A Internalin C; cellular 99.8 2.6E-18 8.9E-23 147.1 11.5 166 24-197 19-184 (263)
102 2ast_B S-phase kinase-associat 99.8 2.5E-19 8.4E-24 159.2 5.3 234 46-287 47-308 (336)
103 2p1m_B Transport inhibitor res 99.8 3.8E-20 1.3E-24 177.0 -0.7 287 17-311 149-518 (594)
104 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.9E-22 135.7 11.6 145 141-285 44-194 (197)
105 3e6j_A Variable lymphocyte rec 99.7 2.4E-16 8.1E-21 132.1 16.9 157 16-176 11-172 (229)
106 4ay9_X Follicle-stimulating ho 99.7 1.8E-16 6.2E-21 141.5 16.8 213 23-238 29-256 (350)
107 4ezg_A Putative uncharacterize 99.7 7E-17 2.4E-21 132.1 12.6 149 93-264 41-195 (197)
108 2v9t_B SLIT homolog 2 protein 99.7 4.2E-16 1.4E-20 129.7 15.6 147 26-176 13-165 (220)
109 2o6s_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 129.2 14.7 164 26-198 9-178 (208)
110 2v9t_B SLIT homolog 2 protein 99.7 6.1E-16 2.1E-20 128.7 15.6 144 167-315 15-168 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 6.5E-16 2.2E-20 128.5 15.3 147 26-176 13-166 (220)
112 3e6j_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 129.0 15.7 147 166-316 22-176 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 8.9E-16 3E-20 127.7 14.2 127 186-315 33-169 (220)
114 2xot_A Amphoterin-induced prot 99.7 1E-15 3.5E-20 137.2 15.2 130 183-315 62-205 (361)
115 2xot_A Amphoterin-induced prot 99.7 1E-15 3.4E-20 137.2 13.7 169 26-198 20-202 (361)
116 2o6s_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 122.1 16.0 161 144-315 10-181 (208)
117 1dce_A Protein (RAB geranylger 99.6 1.5E-18 5.1E-23 164.0 -13.0 103 208-312 443-546 (567)
118 2wfh_A SLIT homolog 2 protein 99.6 2.4E-14 8.2E-19 116.5 13.3 125 188-315 13-142 (193)
119 2wfh_A SLIT homolog 2 protein 99.6 3.2E-14 1.1E-18 115.7 14.0 126 26-155 12-140 (193)
120 1w8a_A SLIT protein; signaling 99.6 4.7E-14 1.6E-18 114.7 13.0 126 26-155 10-140 (192)
121 1w8a_A SLIT protein; signaling 99.6 4.9E-14 1.7E-18 114.6 13.1 125 188-315 11-142 (192)
122 2o6r_A Variable lymphocyte rec 99.6 1.3E-13 4.5E-18 110.5 15.4 126 187-315 9-140 (177)
123 2ell_A Acidic leucine-rich nuc 99.6 1.3E-14 4.4E-19 115.4 9.2 127 44-175 22-159 (168)
124 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-15 1.4E-19 119.2 6.0 128 183-310 17-151 (176)
125 2ell_A Acidic leucine-rich nuc 99.5 1.8E-14 6.2E-19 114.5 9.4 126 185-310 24-158 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 2.8E-14 9.7E-19 111.0 9.4 104 204-307 40-148 (149)
127 3sb4_A Hypothetical leucine ri 99.5 1.1E-14 3.9E-19 128.7 7.9 96 205-305 225-327 (329)
128 3sb4_A Hypothetical leucine ri 99.5 6.7E-14 2.3E-18 123.7 11.6 95 183-279 224-328 (329)
129 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.5E-19 114.6 8.0 129 21-153 16-152 (176)
130 1dce_A Protein (RAB geranylger 99.5 2.1E-15 7.3E-20 142.5 1.7 189 43-235 346-567 (567)
131 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.2E-19 111.7 7.0 107 24-134 17-129 (149)
132 2o6r_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 108.0 14.2 127 25-155 8-138 (177)
133 4fdw_A Leucine rich hypothetic 99.5 3.8E-12 1.3E-16 115.2 18.4 247 45-309 112-380 (401)
134 4fdw_A Leucine rich hypothetic 99.4 2.5E-11 8.5E-16 109.8 19.4 255 19-287 108-385 (401)
135 3g39_A Variable lymphocyte rec 99.4 2.9E-12 9.8E-17 101.9 11.5 105 25-133 10-117 (170)
136 3g39_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 101.1 11.0 106 207-316 10-119 (170)
137 2r9u_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 100.7 11.6 106 25-134 13-121 (174)
138 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 3.9E-16 98.7 11.0 105 208-316 14-122 (174)
139 4fs7_A Uncharacterized protein 99.3 7.8E-11 2.7E-15 106.7 17.8 102 201-309 271-376 (394)
140 4b8c_D Glucose-repressible alc 99.3 1.2E-11 4E-16 120.5 11.4 107 45-155 223-330 (727)
141 1ds9_A Outer arm dynein; leuci 99.3 6.4E-14 2.2E-18 114.5 -4.0 123 47-175 24-152 (198)
142 4b8c_D Glucose-repressible alc 99.3 8.8E-12 3E-16 121.4 10.1 149 24-176 173-329 (727)
143 1ds9_A Outer arm dynein; leuci 99.3 2.9E-13 9.8E-18 110.6 -1.1 106 92-197 44-152 (198)
144 4fs7_A Uncharacterized protein 99.2 2.9E-10 9.8E-15 102.9 16.4 276 16-304 63-393 (394)
145 4gt6_A Cell surface protein; l 99.1 8.1E-09 2.8E-13 93.3 21.8 273 25-310 65-368 (394)
146 3un9_A NLR family member X1; l 99.1 1.7E-11 5.7E-16 109.9 0.5 172 140-311 71-282 (372)
147 2ifg_A High affinity nerve gro 99.1 6.5E-10 2.2E-14 98.8 10.9 103 27-133 11-118 (347)
148 3un9_A NLR family member X1; l 99.0 2.6E-11 9E-16 108.6 0.8 149 117-265 71-254 (372)
149 4gt6_A Cell surface protein; l 99.0 3E-08 1E-12 89.6 20.7 280 15-310 78-389 (394)
150 2ifg_A High affinity nerve gro 99.0 9.8E-10 3.4E-14 97.6 10.0 103 49-155 11-117 (347)
151 4h09_A Hypothetical leucine ri 98.8 1.6E-06 5.4E-11 77.8 21.7 134 181-325 213-354 (379)
152 4h09_A Hypothetical leucine ri 98.8 9.1E-07 3.1E-11 79.3 20.0 262 45-325 45-331 (379)
153 2ra8_A Uncharacterized protein 98.7 3.5E-08 1.2E-12 87.7 7.0 145 160-310 169-341 (362)
154 2ra8_A Uncharacterized protein 98.6 1.5E-07 5E-12 83.7 8.1 132 181-312 168-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.6E-08 1.2E-12 79.1 3.8 111 202-312 32-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 3.3E-07 1.1E-11 77.4 6.9 80 226-305 168-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.4 1.3E-07 4.6E-12 75.7 2.7 107 181-287 32-166 (185)
158 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 68.4 3.6 80 228-310 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.0 1.2E-05 4.3E-10 67.7 6.9 105 43-148 138-258 (267)
160 3e4g_A ATP synthase subunit S, 98.0 4E-06 1.4E-10 65.8 3.2 86 250-350 61-152 (176)
161 3rfe_A Platelet glycoprotein I 97.6 8.1E-05 2.8E-09 55.5 4.9 58 254-315 12-71 (130)
162 3rfe_A Platelet glycoprotein I 97.6 0.00017 5.7E-09 53.8 6.5 55 27-82 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00013 4.4E-09 58.3 3.9 108 203-310 38-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00058 2E-08 54.5 4.3 85 225-309 38-136 (197)
165 2lz0_A Uncharacterized protein 47.6 18 0.00063 24.7 3.5 37 65-105 16-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.6e-35 Score=260.46 Aligned_cols=305 Identities=25% Similarity=0.339 Sum_probs=269.0
Q ss_pred cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
...+++++|+++++.+..++.+..+++|++|++++|.++.++. +.++++|++|++++|.++.. +.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCE
Confidence 3557899999999999999988889999999999999999887 89999999999999998873 35788999999
Q ss_pred EEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCccc
Q 018662 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180 (352)
Q Consensus 101 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 180 (352)
|++++|.+..++.+..+++|++|++++|......+....+++|++|++++|.+.....+..+++|+++++++|.+...+.
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc
Confidence 99999999998888899999999999996655444466689999999999999887778999999999999999987777
Q ss_pred ccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCC
Q 018662 181 LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS 259 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 259 (352)
+..+++|+.+++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+++.+..+++|++|++++
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence 89999999999999998877 57889999999999999999877889999999999999999998899999999999999
Q ss_pred CcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccC
Q 018662 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSH 339 (352)
Q Consensus 260 n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (352)
|++++++.+..+++|+.|++++|.++..+ ...+..+++|++|++++|++.+.. | +. .+.++
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~---~---~~----------~l~~L 335 (347)
T 4fmz_A 275 NQISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITDIR---P---LA----------SLSKM 335 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCCCG---G---GG----------GCTTC
T ss_pred CccCCChhhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCcccccc---C---hh----------hhhcc
Confidence 99999988899999999999999998654 345667899999999999765543 1 22 26789
Q ss_pred ceeceeeeecc
Q 018662 340 SVLGFSFCQDY 350 (352)
Q Consensus 340 ~~~~~~~~~~~ 350 (352)
+.+++++|+..
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999998763
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.4e-33 Score=247.87 Aligned_cols=281 Identities=22% Similarity=0.323 Sum_probs=250.7
Q ss_pred ccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 20 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
+..+++|++|+++++.+++++.+..+++|++|++++|.++.++ .+.++++|++|++++|.+... +.+..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~-----~~~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-----SPLANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCC-----GGGTTCTTCC
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCc-----hhhccCCcee
Confidence 5667899999999999999988788899999999999999886 589999999999999998874 2377899999
Q ss_pred EEEccCC-CCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc
Q 018662 100 ELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178 (352)
Q Consensus 100 ~L~l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 178 (352)
+|++++| .+..++.+..+++|++|++++|.+..... ...+++|++|++++|.+.....+..+++|+.+++.+|.+...
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC
Confidence 9999999 55566668899999999999999887765 456889999999999999877789999999999999999877
Q ss_pred ccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEc
Q 018662 179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257 (352)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 257 (352)
..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+++.+..+++|++|++
T Consensus 215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 7789999999999999998887 588899999999999999998888899999999999999999988899999999999
Q ss_pred CCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662 258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
++|++++. ..+..+++|++|++++|+++.+++ ...+++|++|++++|++.
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence 99999876 567889999999999999998764 567899999999999753
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-32 Score=254.66 Aligned_cols=281 Identities=23% Similarity=0.360 Sum_probs=150.6
Q ss_pred cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
..+++|++|+++++.+++++++..+++|++|++++|.+..++. +.++++|++|++++|.++... .+..+++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~ 138 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLNR 138 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCSE
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCCE
Confidence 4456666666666666666555555666666666666665555 666666666666666665531 2445566666
Q ss_pred EEccCCCCCCCCCCcc---------------------ccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccc
Q 018662 101 LILRDNKLMKIPDVSI---------------------FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159 (352)
Q Consensus 101 L~l~~~~l~~l~~~~~---------------------~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 159 (352)
|++++|.+..++.+.. +++|++|++++|.+..... ...+++|++|++++|.+.....+
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~ 217 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPL 217 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccc
Confidence 6666655554433222 3334444444444333221 22234444444444444443334
Q ss_pred cCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCC
Q 018662 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238 (352)
Q Consensus 160 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n 238 (352)
+.+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..+++|+.|++++|
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence 44445555555555444444445555555555555554444 34455555555555555555544555555555555555
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 239 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
.+.+++.+..+++|+.|++++|++++...+..+++|++|++++|.+++++ .+..+++|+.|++++|++.+
T Consensus 298 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCB
T ss_pred cccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-----hhccCCCCCEEeCCCCccCc
Confidence 55555545555556666666666555544555566666666666655542 23455666666666665433
No 4
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-32 Score=255.37 Aligned_cols=280 Identities=27% Similarity=0.381 Sum_probs=219.0
Q ss_pred cccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
.+.++.|+++++.++.++.+..+++|++|++++|.++.++. +.++++|++|++++|.+.... + +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT----P-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh----h-hcCCCCCCEEE
Confidence 46899999999999999988889999999999999999887 899999999999999998742 2 77899999999
Q ss_pred ccCCCCCCCCCCccccCCcEEEccCCCcccccCC--------------------cccccCcceEEccCCcCCCcccccCC
Q 018662 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL--------------------SNVTDTLKELYVSKNEVPKMEEIEHF 162 (352)
Q Consensus 103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~ 162 (352)
+++|.+..++.+..+++|++|++++|.+...... ...+++|++|++++|.+..+..+..+
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 198 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 198 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence 9999999988899999999999999987765431 12245666666666666666566666
Q ss_pred CCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCC
Q 018662 163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241 (352)
Q Consensus 163 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 241 (352)
++|++|++++|.+.....+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..+++|+.|++++|.+.
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 77777777777666555566677777777777766655 55667777777777777777665677777788888877777
Q ss_pred CCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
+++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++++++ +..+++|+.|++++|++.+
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCC
T ss_pred ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCC
Confidence 776677777888888888888777667777888888888888876543 4567888888888886543
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=248.64 Aligned_cols=288 Identities=24% Similarity=0.324 Sum_probs=236.9
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.++++++|+++++++++++. +..+++|++|++++|.++.+ |..|.++++|++|++++|.++.. +...|..+++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L 106 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLSNL 106 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC---CTTSSTTCTTC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc---CcccccCCCCC
Confidence 35678999999999988754 44568899999999999876 55688999999999999988875 23346678899
Q ss_pred cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCC
Q 018662 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSN 173 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~ 173 (352)
++|++++|.+..+++ +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+.... .+..+++|+.|++.+|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 999999998886643 7788999999999998877654 3445788999999999887743 4788899999999998
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--
Q 018662 174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-- 244 (352)
Q Consensus 174 ~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~-- 244 (352)
.+..+ ..+..+++|+.|++++|..... ......+|+.|++++|.++..+ .+..+++|+.|++++|.+..++
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 87633 3578888999999988765443 3334458999999999998886 4778999999999999998865
Q ss_pred CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 245 GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 245 ~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.+..+++|+.|++++|+++++ ..+..+++|+.|++++|.++.++ ...+..+++|++|++++|++.|++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGCCEEECCSSCEECSG
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC---HhHcCCCcccCEEEccCCCccCcc
Confidence 478899999999999999887 57889999999999999999876 346778899999999999999988
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.5e-31 Score=238.58 Aligned_cols=276 Identities=21% Similarity=0.235 Sum_probs=199.6
Q ss_pred ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
.+++.++++++.++.++.. ..+++|++|++++|.++.++. .+..+++|++|++++|.++... ...+..+++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC---HHHhcCCCCCCE
Confidence 6788999999999888763 446889999999999987765 5888999999999999888753 334667889999
Q ss_pred EEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCC
Q 018662 101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV 177 (352)
Q Consensus 101 L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 177 (352)
|++++|.+..+|. +..+++|++|++++|.+....+. ...+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccc
Confidence 9999999988886 57889999999999988876543 44578899999999888764 35667778888888776643
Q ss_pred cccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEE
Q 018662 178 MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL 255 (352)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L 255 (352)
+...+.|+.|++++|.+........++|+.|++++|.++..+.+..+++|+.|++++|.+.++ ..+..+++|++|
T Consensus 201 ---~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 201 ---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp ---EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ---cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 233456777777777766664455566777777777766666666667777777777766654 235566667777
Q ss_pred EcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 256 DVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 256 ~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
++++|+++++ ..+..+++|++|++++|.++.++.... .+++|+.|++++|+
T Consensus 278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRLENLYLDHNS 329 (390)
T ss_dssp ECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH----HHTTCSEEECCSSC
T ss_pred ECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccc----ccCcCCEEECCCCc
Confidence 7777776665 334456667777777777666554322 23566666666664
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=4.9e-31 Score=246.07 Aligned_cols=304 Identities=20% Similarity=0.271 Sum_probs=256.2
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+.+++++..++.+|. .+++++++|++++|.++.++ ..|.++++|++|++++|.++... +..|..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEECC
Confidence 4678999999999886 67899999999999999885 46999999999999999998863 3467789999999999
Q ss_pred CCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCcc
Q 018662 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVME 179 (352)
Q Consensus 105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~ 179 (352)
+|.+..++. +..+++|++|++++|.+....+ .+..+++|++|++++|.+... ..+..+++|++|++++|.+..++
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 999999886 7889999999999999987654 445589999999999988773 46889999999999999987553
Q ss_pred --cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCCCC--CCCCCC
Q 018662 180 --NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISKME--GLSTLV 250 (352)
Q Consensus 180 --~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~ 250 (352)
.+..+++|+.|++++|.+... .+..+++|+.|++++|..... + ......+|+.|++++|.++.++ .+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 478999999999999998877 677889999999999865443 2 3344568999999999999887 478889
Q ss_pred CCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHH
Q 018662 251 NLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYS 328 (352)
Q Consensus 251 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 328 (352)
+|+.|++++|.++++ ..+..+++|++|++++|.++.++ ...+..+++|+.|++++|. +..++...|..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~--- 318 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNVSGNQ----LTTLEESVFHS--- 318 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEECCSSC----CSCCCGGGBSC---
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEECCCCc----CceeCHhHcCC---
Confidence 999999999999887 46888999999999999999764 3456788999999999994 55566665653
Q ss_pred HHHHhhhhccCceeceeeeecc
Q 018662 329 RLILMYFFRSHSVLGFSFCQDY 350 (352)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
+.+++.+++++|.+.
T Consensus 319 -------l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 319 -------VGNLETLILDSNPLA 333 (477)
T ss_dssp -------GGGCCEEECCSSCEE
T ss_pred -------CcccCEEEccCCCcc
Confidence 567888888877654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=5.1e-31 Score=244.48 Aligned_cols=288 Identities=19% Similarity=0.272 Sum_probs=215.6
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cch-hhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
.++++++|+++++.++++++ +..+++|++|++++|.+. .++ ..|.++++|++|++++|.++... +..+..+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE---TGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC---TTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC---hhhccCccc
Confidence 45678888888888887643 445678888888888776 554 34777888888888888777652 334566778
Q ss_pred CcEEEccCCCCCC--CCC--CccccCCcEEEccCCCcccccCC--cccccCcceEEccCCcCCCc--cccc---------
Q 018662 98 LEELILRDNKLMK--IPD--VSIFKKLSVFDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKM--EEIE--------- 160 (352)
Q Consensus 98 L~~L~l~~~~l~~--l~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~--------- 160 (352)
|++|++++|.+.+ .+. +..+++|++|++++|.+....+. ...+++|++|++++|.+... ..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 8888888877765 222 66677788888888777766443 34567778888877766552 1121
Q ss_pred -------------------------CCCCCcEEEcCCCccCCc--cc---------------------------------
Q 018662 161 -------------------------HFHDLQILEFGSNRLRVM--EN--------------------------------- 180 (352)
Q Consensus 161 -------------------------~~~~L~~L~l~~~~l~~~--~~--------------------------------- 180 (352)
.+++|++|++++|.+... ..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 335677777777765310 00
Q ss_pred ----cc--CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCC
Q 018662 181 ----LQ--NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLS 247 (352)
Q Consensus 181 ----~~--~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~ 247 (352)
+. ..++|+.+++++|.+... .+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+.++. .+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 00 125788888888888776 5778899999999999998773 5778999999999999998763 478
Q ss_pred CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.+++|++|++++|+++++ ..+..+++|++|++++|.++.++. ..+..+++|+.|++++|++.|++
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH---hHhccCCcccEEEccCCCcccCC
Confidence 899999999999999887 568889999999999999998763 35678899999999999999999
No 9
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.2e-30 Score=237.65 Aligned_cols=275 Identities=23% Similarity=0.238 Sum_probs=183.0
Q ss_pred ccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 20 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
+...+++++|+++++.+++++.+..+++|++|++++|.++.++ +..+++|++|++++|.+++. .+..+++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~------~~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL------DVTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee------ecCCCCcCC
Confidence 3445678888888888887776666778888888888887775 67778888888888877763 155677788
Q ss_pred EEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcc
Q 018662 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179 (352)
Q Consensus 100 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 179 (352)
+|++++|.+..++ +..+++|++|++++|.+.++. ...+++|++|++++|...+...+..+++|++|++++|.++.++
T Consensus 110 ~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 110 YLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp EEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 8888888777765 677778888888887777652 3346677777777774333224666677777777777666554
Q ss_pred cccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC--------------
Q 018662 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG-------------- 245 (352)
Q Consensus 180 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------- 245 (352)
+..+++|+.|++++|.+....+..+++|+.|++++|.++++| +..+++|+.|++++|.+++++.
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred -cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 666667777777777666666666667777777777666665 5566666666666666655431
Q ss_pred -----------------CCCCCCCcEEEcCCCcCCCc----------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccc
Q 018662 246 -----------------LSTLVNLHVLDVSSNKLTLV----------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298 (352)
Q Consensus 246 -----------------~~~~~~L~~L~l~~n~l~~~----------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~ 298 (352)
...+++|+.|++++|...+. -.+..+++|++|++++|.++.++ +..|
T Consensus 265 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l 338 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHN 338 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTC
T ss_pred CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccC
Confidence 12234455555555542111 02445567777777777777642 4567
Q ss_pred cCccEeeccCCCccc
Q 018662 299 ETLTTIYLENNPQNL 313 (352)
Q Consensus 299 ~~L~~L~l~~n~~~~ 313 (352)
++|+.|++++|.+.+
T Consensus 339 ~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCSEEECCSSCCCB
T ss_pred CcCcEEECCCCCCCC
Confidence 788888888886554
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.1e-30 Score=242.31 Aligned_cols=306 Identities=21% Similarity=0.277 Sum_probs=243.6
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
.-+.++++++.++.+|. .++++++|++++|.++.+ |..+.++++|++|++++|.+.... ....|..+++|++|++
T Consensus 11 ~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 11 IGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKL 86 (455)
T ss_dssp ETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEEC
T ss_pred EccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE--CcccccccccCCEEeC
Confidence 34678999999999987 779999999999999977 556999999999999999886432 2345778999999999
Q ss_pred cCCCCCCC-CC-CccccCCcEEEccCCCcccc-c--CCcccccCcceEEccCCcCCCc--cc-ccCCCCCcEEEcCCCcc
Q 018662 104 RDNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-H--GLSNVTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRL 175 (352)
Q Consensus 104 ~~~~l~~l-~~-~~~~~~L~~L~l~~~~~~~~-~--~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l 175 (352)
++|.+..+ |. +..+++|++|++++|.+.+. + .....+++|++|++++|.+... .. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999876 43 88899999999999999863 2 2245588999999999998874 22 78999999999999987
Q ss_pred CCc--cccc----------------------------------CCCCCcEEEccCCcccee-----------------cC
Q 018662 176 RVM--ENLQ----------------------------------NLTNLQELWLGRNRIKVV-----------------NL 202 (352)
Q Consensus 176 ~~~--~~~~----------------------------------~~~~L~~L~l~~~~l~~~-----------------~~ 202 (352)
... ..+. .+++|+.|++++|.+... .+
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 532 2222 235688888888765431 00
Q ss_pred C-------------------------CCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCc
Q 018662 203 C-------------------------GLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLH 253 (352)
Q Consensus 203 ~-------------------------~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~ 253 (352)
. ..++|+.+++++|.+...+ .+..+++|+.|++++|.+.+++ .+..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 0 1257888888888887662 4778899999999999998763 578889999
Q ss_pred EEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHH
Q 018662 254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLI 331 (352)
Q Consensus 254 ~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 331 (352)
+|++++|.++++ ..+..+++|++|++++|.++.++ ...+..+++|++|++++|. +..+|...|..
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~------ 393 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG---DQSFLGLPNLKELALDTNQ----LKSVPDGIFDR------ 393 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSC----CSCCCTTTTTT------
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccC---hhhccccccccEEECCCCc----cccCCHhHhcc------
Confidence 999999999877 56788999999999999998763 3456778999999999995 44567666653
Q ss_pred HhhhhccCceeceeeeeccC
Q 018662 332 LMYFFRSHSVLGFSFCQDYG 351 (352)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~ 351 (352)
+++++.+++++|++.+
T Consensus 394 ----l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 394 ----LTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ----CTTCCEEECCSSCBCC
T ss_pred ----CCcccEEEccCCCccc
Confidence 5788999999888765
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-30 Score=234.49 Aligned_cols=284 Identities=23% Similarity=0.308 Sum_probs=241.0
Q ss_pred cccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccc
Q 018662 17 DQAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWD 93 (352)
Q Consensus 17 ~~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 93 (352)
+.++...++|++|+++++.+++++. +..+++|++|++++|.+..+++. +.++++|++|++++|.++.. +...|.
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~ 138 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL---PRGIFH 138 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTT
T ss_pred hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC---CHHHhc
Confidence 3446667899999999999998864 45679999999999999988654 89999999999999999874 223357
Q ss_pred cCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662 94 ALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG 171 (352)
Q Consensus 94 ~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 171 (352)
.+++|++|++++|.+..+++ +..+++|++|++++|.+.... ...+++|+.+++++|.+... ...+.|+.++++
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~~L~~L~l~ 213 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDAS 213 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE---ECCSSCSEEECC
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc---CCCCcceEEECC
Confidence 79999999999999998765 888999999999999988763 34578999999999987653 455689999999
Q ss_pred CCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCCCC-CC
Q 018662 172 SNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-LS 247 (352)
Q Consensus 172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~-~~ 247 (352)
+|.+...+. ...++|+.|++++|.+... .+..+++|+.|++++|.+... ..+..+++|+.|++++|++++++. ..
T Consensus 214 ~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 214 HNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp SSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred CCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 998875533 3457899999999998887 677899999999999999877 257789999999999999998764 45
Q ss_pred CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 248 TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.+++|++|++++|+++.+ +.+..+++|+.|++++|.++.++ ...+++|+.|++++|++.|+.
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccchh
Confidence 789999999999999988 56778899999999999999764 466899999999999998875
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1e-29 Score=244.06 Aligned_cols=291 Identities=25% Similarity=0.332 Sum_probs=247.4
Q ss_pred cCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 25 SNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
+++.|+++++.+++++. +..+++|++|++++|.++.+|..+.++++|++|++++|.++... ...+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC---QISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG---GGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc---hhhhhccCcCCEEE
Confidence 78999999999999876 44568999999999999999999999999999999999998753 34567789999999
Q ss_pred ccCCCCC-CCCC--CccccCCcEEEccCCCccccc---CCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCCc
Q 018662 103 LRDNKLM-KIPD--VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNR 174 (352)
Q Consensus 103 l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~ 174 (352)
+++|.+. .++. +..+++|++|++++|.+.... .....+++|++|++++|.+.. +..+..+++|++|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9999877 4554 788999999999999998764 344558999999999998876 3568889999999999998
Q ss_pred cCCc---ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-----cCccccccCcEEECCCCCCCCC
Q 018662 175 LRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM 243 (352)
Q Consensus 175 l~~~---~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~ 243 (352)
+... ..+..+++|+.|++++|.+... .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 8633 3378899999999999988765 577899999999999998763 2477899999999999999886
Q ss_pred C--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccC
Q 018662 244 E--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLP 319 (352)
Q Consensus 244 ~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 319 (352)
. .+..+++|++|++++|++++. ..+..++.| .|++++|.++.+++ ..+..+++|+.|++++||+.|++ +
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c---~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP---SLLPILSQQRTINLRQNPLDCTC---S 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG---GGHHHHHTSSEEECTTCCEECSG---G
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH---hhcccCCCCCEEeCCCCCccccC---C
Confidence 3 578899999999999999877 678889999 99999999997653 33455799999999999999998 4
Q ss_pred CccHHH
Q 018662 320 SDKFSQ 325 (352)
Q Consensus 320 ~~~~~~ 325 (352)
..+|..
T Consensus 565 ~~~~~~ 570 (606)
T 3t6q_A 565 NIYFLE 570 (606)
T ss_dssp GHHHHH
T ss_pred cHHHHH
Confidence 444543
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.7e-30 Score=243.46 Aligned_cols=276 Identities=21% Similarity=0.235 Sum_probs=188.0
Q ss_pred ccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
.+++.++++++.+..+|.. ..+++|++|++++|.+..+++ .|..+++|++|++++|.+++.. ...|..+++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC---HHHHcCCCCCCE
Confidence 5678888888888888763 346888889998888887765 5888888999999888888753 334567888888
Q ss_pred EEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCC
Q 018662 101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV 177 (352)
Q Consensus 101 L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 177 (352)
|++++|.+..+|. +..+++|++|++++|.+.+.++. +..+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCcccc
Confidence 8988888888876 57788888888888888876653 44578888888888887764 35566777777777776542
Q ss_pred cccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEE
Q 018662 178 MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL 255 (352)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L 255 (352)
+...+.|+.|++++|.+........++|+.|++++|.+++.+.+..+++|+.|++++|.+.++ ..+..+++|+.|
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ---ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 233445666666666666554344456666666666666655566666666666666666554 235556666666
Q ss_pred EcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 256 DVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 256 ~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
++++|.++++ ..+..+++|+.|++++|.++.+|.... .+++|+.|++++|+
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~----~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRLENLYLDHNS 335 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH----HHTTCSEEECCSSC
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc----cCCCCCEEECCCCC
Confidence 6666666655 333445666666666666665553322 23555555555553
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=239.12 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=88.9
Q ss_pred ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
+++++|+++++.++++++ +..+++|++|++++|+++.+ |..|.++++|++|++++|.++... .. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp----~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS----CH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE----CC--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC----cc--ccCCccE
Confidence 789999999999998864 56679999999999999977 567999999999999999998631 12 6899999
Q ss_pred EEccCCCCCC--CCC-CccccCCcEEEccCCCccc
Q 018662 101 LILRDNKLMK--IPD-VSIFKKLSVFDVSFNEITS 132 (352)
Q Consensus 101 L~l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~ 132 (352)
|++++|.+.. +|. +..+++|++|++++|.+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999999986 444 8889999999999998865
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.2e-29 Score=243.63 Aligned_cols=215 Identities=22% Similarity=0.263 Sum_probs=103.4
Q ss_pred CCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC---cccccCCCCCcEEEc
Q 018662 96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEF 170 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l 170 (352)
++|++|++++|.+..+|. +..+++|++|++++|.+....+ ....+++|++|++++|.+.. ...+..+++|+++++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 334444444444333333 3333444444444444333221 12223344444444443331 112344444555555
Q ss_pred CCCccCCc----ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCC
Q 018662 171 GSNRLRVM----ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGI 240 (352)
Q Consensus 171 ~~~~l~~~----~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l 240 (352)
++|.+... ..+..+++|+.|++++|.+... .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 54444321 2344455555555555554443 3444555555555555554331 144555666666666655
Q ss_pred CCCC--CCCCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 241 SKME--GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 241 ~~~~--~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
.... .+..+++|++|++++|++++. ..+..+++|+.|++++|.++.++ ...+..+++|++|++++|.+.+
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCCCccCc
Confidence 5432 345566666666666666542 23555666666666666666443 2234556666666666664443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=243.10 Aligned_cols=283 Identities=23% Similarity=0.304 Sum_probs=238.1
Q ss_pred ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCcccccccccccc
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (352)
.++...++|+.|+++++.++++++ +..+++|++|++++|.+..+++. |.++++|++|++++|.++.. +...|..
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~ 145 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL---PRGIFHN 145 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTT
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC---CHHHhcc
Confidence 345666899999999999999864 55679999999999999988765 79999999999999999875 2234678
Q ss_pred CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCC
Q 018662 95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 172 (352)
+++|++|++++|.+..+++ +..+++|++|++++|.+.... ...+++|+.|++++|.+.. +...+.|+.|++++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~---l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST---LAIPIAVEELDASH 220 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE---EECCTTCSEEECCS
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc---ccCCchhheeeccC
Confidence 9999999999999998765 888999999999999998764 3447899999999997765 34567899999999
Q ss_pred CccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC-CCC
Q 018662 173 NRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG-LST 248 (352)
Q Consensus 173 ~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~ 248 (352)
|.+..++.. ..++|+.|++++|.+... .+..+++|+.|++++|.+.+.+ .+..+++|+.|++++|.+.+++. +..
T Consensus 221 n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 299 (597)
T 3oja_B 221 NSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299 (597)
T ss_dssp SCCCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSC
T ss_pred Ccccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCccccc
Confidence 988644332 236899999999998877 6778899999999999988772 57789999999999999998764 456
Q ss_pred CCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 249 LVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 249 ~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++ ...+++|+.|++++|+|.|..
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCChh
Confidence 88999999999999887 56778899999999999999764 466799999999999998765
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.4e-29 Score=238.22 Aligned_cols=291 Identities=21% Similarity=0.259 Sum_probs=183.9
Q ss_pred cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
++++++|++++|.++++++ +..+++|++|++++|.++.+ |..|.++++|++|++++|.++... .. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp----~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS----CC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC----SC--CCTTCS
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC----cc--ccccCC
Confidence 3678888888888887763 45567888888888888876 445778888888888888877531 11 578888
Q ss_pred EEEccCCCCCCCC--C-CccccCCcEEEccCCCcccccCCcccccCc--ceEEccCCcC---------------------
Q 018662 100 ELILRDNKLMKIP--D-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL--KELYVSKNEV--------------------- 153 (352)
Q Consensus 100 ~L~l~~~~l~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--------------------- 153 (352)
+|++++|.+..++ . +..+++|++|++++|.+.... ...+.+| ++|++++|.+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT--TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccCc--hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 8888888887654 2 777888888888888776421 1112222 4444444333
Q ss_pred --------------------------------------------------------------------------------
Q 018662 154 -------------------------------------------------------------------------------- 153 (352)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (352)
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence
Q ss_pred ------CC--cccc-----------------------------------------------------cCCCCCcEEEcCC
Q 018662 154 ------PK--MEEI-----------------------------------------------------EHFHDLQILEFGS 172 (352)
Q Consensus 154 ------~~--~~~~-----------------------------------------------------~~~~~L~~L~l~~ 172 (352)
.+ +..+ ..+++|+++++++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 10 0000 2334455555555
Q ss_pred CccCC--cccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCCCCCC
Q 018662 173 NRLRV--MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISK 242 (352)
Q Consensus 173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~ 242 (352)
|.+.. +..+..+++|+.|++++|.+... .+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 55432 23445555555566555555542 24555566666666665554 33 24455566666666665543
Q ss_pred CCCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCc
Q 018662 243 MEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSD 321 (352)
Q Consensus 243 ~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 321 (352)
...-.-.++|++|++++|+++.+ +.+..+++|++|++++|+++.+|.. .+..+++|+.|++++|||.|++ +..
T Consensus 443 ~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c---~~~ 516 (562)
T 3a79_B 443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHDNPWDCTC---PGI 516 (562)
T ss_dssp GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCSCCBCCCH---HHH
T ss_pred chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecCCCcCCCc---chH
Confidence 21111115788888888888877 4455888999999999999987643 4677899999999999999988 444
Q ss_pred cHHHHH
Q 018662 322 KFSQIY 327 (352)
Q Consensus 322 ~~~~~~ 327 (352)
+|...|
T Consensus 517 ~~~~~~ 522 (562)
T 3a79_B 517 RYLSEW 522 (562)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 453333
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.9e-29 Score=220.14 Aligned_cols=281 Identities=22% Similarity=0.319 Sum_probs=223.5
Q ss_pred cccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEE
Q 018662 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 101 (352)
...++.++++++.++.+|. .+++.+++|++++|.++.++. .+.++++|++|++++|.++... +..+..+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC---HHHhcCCCCCCEE
Confidence 3478999999999999875 567899999999999998876 5899999999999999998863 3457789999999
Q ss_pred EccCCCCCCCCCCccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC----cccccCCCCCcEEEcCCCccC
Q 018662 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLR 176 (352)
Q Consensus 102 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~l~ 176 (352)
++++|.+..+|.. ..++|++|++++|.+...... ...+++|++|++++|.+.. ...+..+++|+++++++|.+.
T Consensus 106 ~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 106 YLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 9999999988762 237999999999998876543 3457899999999998853 356788899999999999887
Q ss_pred CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC-CCCCCC
Q 018662 177 VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLV 250 (352)
Q Consensus 177 ~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~-~~~~~~ 250 (352)
.++... .++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+..++ .+..++
T Consensus 185 ~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 185 TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp SCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred cCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 543321 27899999999988776 5778889999999999888774 4778889999999999988875 477888
Q ss_pred CCcEEEcCCCcCCCc--cccc------CCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 251 NLHVLDVSSNKLTLV--DDIQ------NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 251 ~L~~L~l~~n~l~~~--~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+|++|++++|+++++ ..+. ..+.++.+++++|++..++ +....+..+++++.+++++|.
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCGGGGTTCCCGGGEEC----
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc-cCccccccccceeEEEecccC
Confidence 999999999998877 2232 2367888999999987543 223456777889999998883
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=9.2e-30 Score=245.08 Aligned_cols=227 Identities=15% Similarity=0.198 Sum_probs=131.3
Q ss_pred ccccccccccCceeecCCCCCcC------------------CCC-CC--CCCcccEEEcCCCCCC-cchhhhhcCCCCcE
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK 73 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~ 73 (352)
++..+...++|++|+++++.+++ +|. +. .+++|++|++++|.+. .+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 44456666788888888888887 654 33 4678888888888766 67777778888888
Q ss_pred EeccCCc-cCc-ccccccccc---ccCCCCcEEEccCCCCCCCCC---CccccCCcEEEccCCCcc-cccCCcccccCcc
Q 018662 74 LSLRQNL-IDD-AAIEPISRW---DALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEIT-SSHGLSNVTDTLK 144 (352)
Q Consensus 74 L~l~~~~-~~~-~~~~~~~~~---~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~ 144 (352)
|++++|. +++ ..|..+..+ ..+++|++|++++|.+..+|. +..+++|++|++++|.+. .++ ....+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888886 665 333222211 223677777777777776665 566777777777777766 333 334456666
Q ss_pred eEEccCCcCCCc-ccccCCCC-CcEEEcCCCccCCcc-cccCC--CCCcEEEccCCcccee---cCC-------CCCCCC
Q 018662 145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVME-NLQNL--TNLQELWLGRNRIKVV---NLC-------GLKCIK 209 (352)
Q Consensus 145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~l~~~~-~~~~~--~~L~~L~l~~~~l~~~---~~~-------~~~~L~ 209 (352)
+|++++|.+..+ ..+..+++ |++|++++|.+..++ .+... ++|+.|++++|.+... .+. .+++|+
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 666666655542 33555555 666666666554322 22222 2455555555554432 122 333455
Q ss_pred EEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCC
Q 018662 210 KISLQSNRLTSMKG--FEECIALEELYLSHNGISKM 243 (352)
Q Consensus 210 ~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ 243 (352)
.|++++|.++.+|. +..+++|+.|++++|.++.+
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 55555554444432 22344444444444444433
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.3e-30 Score=245.09 Aligned_cols=110 Identities=22% Similarity=0.243 Sum_probs=58.4
Q ss_pred ccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCC
Q 018662 20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (352)
Q Consensus 20 ~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 96 (352)
+...++|++|+++++.++++++ +..+++|++|++++|.+..+ |..|.++++|++|++++|.++...+ ..+..++
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 128 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---FPIGQLI 128 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS---SCCTTCT
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc---cccCCCC
Confidence 3444555555555555555533 23345566666666655544 3445555666666666655554321 2244555
Q ss_pred CCcEEEccCCCCCC--CCC-CccccCCcEEEccCCCccc
Q 018662 97 GLEELILRDNKLMK--IPD-VSIFKKLSVFDVSFNEITS 132 (352)
Q Consensus 97 ~L~~L~l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~ 132 (352)
+|++|++++|.+.. +|. +..+++|++|++++|.+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 66666666665553 343 5555666666666555443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.4e-29 Score=234.96 Aligned_cols=152 Identities=24% Similarity=0.303 Sum_probs=112.8
Q ss_pred CCCCCcEEEcCCCccCC-----cccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCCCcCCCCc-Ccccccc
Q 018662 161 HFHDLQILEFGSNRLRV-----MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK-GFEECIA 229 (352)
Q Consensus 161 ~~~~L~~L~l~~~~l~~-----~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 229 (352)
.+++|++|++++|.+.. ...++.+++|+.|++++|.+... .+..+++|+.|++++|.++.+| .+..+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 46677788888877753 12356778888888888887654 3667788888888888887765 3556677
Q ss_pred CcEEECCCCCCCCCCC-------------------CCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHH
Q 018662 230 LEELYLSHNGISKMEG-------------------LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290 (352)
Q Consensus 230 L~~L~l~~n~l~~~~~-------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 290 (352)
|+.|++++|.++.++. ...+++|++|++++|+++.++....+++|+.|++++|+++.++
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~-- 489 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP-- 489 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCC--
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcC--
Confidence 7777777777655432 1356788888888888887765667888899999999888665
Q ss_pred HHHHhccccCccEeeccCCCccccc
Q 018662 291 VEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
...+..+++|+.|++++|++.|++
T Consensus 490 -~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 490 -DGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp -TTGGGGCTTCCEEECCSSCBCCCH
T ss_pred -HHHHhcCcccCEEEecCCCccCCC
Confidence 334667889999999999998888
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.9e-29 Score=233.63 Aligned_cols=290 Identities=22% Similarity=0.248 Sum_probs=209.2
Q ss_pred ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 95 (352)
..+...++|++|++++|+++++.+ +..+++|++|++++|+++.+|.. .+++|++|++++|.++... .+..+..+
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~--~p~~~~~l 114 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALP--ICKEFGNM 114 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCC--CCGGGGGC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcccccc--chhhhccC
Confidence 556777899999999999998843 45678999999999999998876 8999999999999988742 22467789
Q ss_pred CCCcEEEccCCCCCCCCCCccccCC--cEEEccCCCc--ccccC-Cccc-------------------------------
Q 018662 96 AGLEELILRDNKLMKIPDVSIFKKL--SVFDVSFNEI--TSSHG-LSNV------------------------------- 139 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~~~~~~~L--~~L~l~~~~~--~~~~~-~~~~------------------------------- 139 (352)
++|++|++++|.+.. ..+..+++| ++|++++|.+ ....+ ....
T Consensus 115 ~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp TTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred CcceEEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 999999999998875 235566666 8888877766 11100 0000
Q ss_pred ----------------------------------------------------ccCcceEEccCCcCCC--ccc-------
Q 018662 140 ----------------------------------------------------TDTLKELYVSKNEVPK--MEE------- 158 (352)
Q Consensus 140 ----------------------------------------------------~~~L~~L~l~~~~~~~--~~~------- 158 (352)
.++|++|++++|.+.+ +..
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred eccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 1145555555444331 111
Q ss_pred ----------------------------------------------ccCCCCCcEEEcCCCccCC--cccccCCCCCcEE
Q 018662 159 ----------------------------------------------IEHFHDLQILEFGSNRLRV--MENLQNLTNLQEL 190 (352)
Q Consensus 159 ----------------------------------------------~~~~~~L~~L~l~~~~l~~--~~~~~~~~~L~~L 190 (352)
...+++|++|++++|.+.. +..+..+++|+.|
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 1456677777777777753 4556777788888
Q ss_pred EccCCcccee-----cCCCCCCCCEEEcCCCcCCC-Cc--CccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcC
Q 018662 191 WLGRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262 (352)
Q Consensus 191 ~l~~~~l~~~-----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l 262 (352)
++++|.+... .+..+++|++|++++|.+.. .| .+..+++|+.|++++|.+++...-...++|+.|++++|++
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCC
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcc
Confidence 8888777753 36677888888888887776 54 3566778888888888775421111126889999999988
Q ss_pred CCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 263 TLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 263 ~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+.+ ..+..+++|++|++++|+++.+|.. .+..+++|++|++++|++.|++
T Consensus 434 ~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 434 KSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCBCCCH
T ss_pred cccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcCCCCcccC
Confidence 877 4466889999999999999987643 4677899999999999999988
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.7e-29 Score=245.74 Aligned_cols=227 Identities=16% Similarity=0.204 Sum_probs=143.6
Q ss_pred ccccccccccCceeecCCCCCcC------------------CCCC-C--CCCcccEEEcCCCCCC-cchhhhhcCCCCcE
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDSV-E--FPTNLTELDLTANRLT-SLDSRISHLSNLKK 73 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~------------------~~~~-~--~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~ 73 (352)
++..+...++|+.|++++|.+++ +|.. . .+++|++|++++|.+. .+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45566777889999999999988 6653 3 5788999999999866 77888889999999
Q ss_pred EeccCCc-cCc-ccccccc----ccccCCCCcEEEccCCCCCCCCC---CccccCCcEEEccCCCcccccCCcccccCcc
Q 018662 74 LSLRQNL-IDD-AAIEPIS----RWDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144 (352)
Q Consensus 74 L~l~~~~-~~~-~~~~~~~----~~~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 144 (352)
|++++|. +++ ..|..+. .+..+++|++|++++|.+..+|. +..+++|+.|++++|.+..++ ....+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 9999987 765 3332222 22344578888888887777776 677778888888888777555 444567777
Q ss_pred eEEccCCcCCCc-ccccCCCC-CcEEEcCCCccCCcc-cccCC--CCCcEEEccCCcccee--c----CC--CCCCCCEE
Q 018662 145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVME-NLQNL--TNLQELWLGRNRIKVV--N----LC--GLKCIKKI 211 (352)
Q Consensus 145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~l~~~~-~~~~~--~~L~~L~l~~~~l~~~--~----~~--~~~~L~~L 211 (352)
.|++++|.+..+ ..+..+++ |+.|++++|.+..++ .+... ++|+.|++++|.+... . .. ..++|+.|
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 777777777653 34666666 777777777665332 22222 2356666665554332 0 00 12344455
Q ss_pred EcCCCcCCCCcC--ccccccCcEEECCCCCCCCC
Q 018662 212 SLQSNRLTSMKG--FEECIALEELYLSHNGISKM 243 (352)
Q Consensus 212 ~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ 243 (352)
++++|.+..+|. +..+++|+.|++++|.+..+
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 555544444431 12344444444444444443
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.3e-29 Score=239.71 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=86.7
Q ss_pred ccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC--CC-CCCCCCC
Q 018662 181 LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK--ME-GLSTLVN 251 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~--~~-~~~~~~~ 251 (352)
+..+++|+.|++++|.+... .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++ .+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 33444444444444443332 233445555555555554433 1 34455666666666665554 22 3556667
Q ss_pred CcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHH
Q 018662 252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSR 329 (352)
Q Consensus 252 L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 329 (352)
|++|++++|++++. ..+..+++|++|++++|+++.+. ...+..+++|++|++++|.+. .+|.. |..+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~----~~p~~-~~~l--- 543 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYNQLYSLSTLDCSFNRIE----TSKGI-LQHF--- 543 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTTTCTTCCEEECTTSCCC----CEESC-GGGS---
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHccCCCcCCEEECCCCcCc----ccCHh-Hhhh---
Confidence 77777777776655 34666777777777777777542 234556677777777777433 44544 4321
Q ss_pred HHHhhhhccCceeceeeeeccC
Q 018662 330 LILMYFFRSHSVLGFSFCQDYG 351 (352)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
.+++.++++++|++.+
T Consensus 544 ------~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 544 ------PKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ------CTTCCEEECCSCCCCC
T ss_pred ------cccCcEEEccCCCccc
Confidence 2357777777776653
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.8e-29 Score=236.16 Aligned_cols=264 Identities=23% Similarity=0.284 Sum_probs=196.3
Q ss_pred ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccC
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 95 (352)
..+...++|++|++++|.++++++ +..+++|++|++++|.++.+|.. .+++|++|++++|.++... .+..+..+
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--~p~~~~~l 145 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP--VCKEFGNL 145 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC--CCGGGGGC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC--chHhhccc
Confidence 456666788888888888887754 34457888888888888877765 6788888888888777642 12356667
Q ss_pred CCCcEEEccCCCCCCCCCCcccc---------------------------------------------------------
Q 018662 96 AGLEELILRDNKLMKIPDVSIFK--------------------------------------------------------- 118 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~~~~~~--------------------------------------------------------- 118 (352)
++|++|++++|.+... .+..++
T Consensus 146 ~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp TTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred CcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 7777777777765531 111222
Q ss_pred ----------------------------------------------------CCcEEEccCCCccc-ccCCc--------
Q 018662 119 ----------------------------------------------------KLSVFDVSFNEITS-SHGLS-------- 137 (352)
Q Consensus 119 ----------------------------------------------------~L~~L~l~~~~~~~-~~~~~-------- 137 (352)
+|++|++++|.+.+ ++...
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence 34444444444331 11111
Q ss_pred ---------------------------------------------ccccCcceEEccCCcCCC--cccccCCCCCcEEEc
Q 018662 138 ---------------------------------------------NVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEF 170 (352)
Q Consensus 138 ---------------------------------------------~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l 170 (352)
..+++|++|++++|.+.. +..+..+++|+.|++
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 345789999999998887 467889999999999
Q ss_pred CCCccCCcc----cccCCCCCcEEEccCCccce-e---cCCCCCCCCEEEcCCCcCCCCcCcccc-ccCcEEECCCCCCC
Q 018662 171 GSNRLRVME----NLQNLTNLQELWLGRNRIKV-V---NLCGLKCIKKISLQSNRLTSMKGFEEC-IALEELYLSHNGIS 241 (352)
Q Consensus 171 ~~~~l~~~~----~~~~~~~L~~L~l~~~~l~~-~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 241 (352)
++|.+..++ .+..+++|+.|++++|.+.. . .+..+++|+.|++++|.+++.. ...+ ++|+.|++++|+++
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCC
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCc
Confidence 999987543 47889999999999999877 3 4677899999999999986542 1223 79999999999999
Q ss_pred CCC-CCCCCCCCcEEEcCCCcCCCcc-c-ccCCCCCCeEEcCCCCCcch
Q 018662 242 KME-GLSTLVNLHVLDVSSNKLTLVD-D-IQNLSRLEDLWLNDNQIESL 287 (352)
Q Consensus 242 ~~~-~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~i~~~ 287 (352)
.++ .+..+++|++|++++|+++.++ . +..+++|+.|++++|++..-
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 986 4668899999999999999883 3 88899999999999999863
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.9e-30 Score=250.78 Aligned_cols=60 Identities=23% Similarity=0.186 Sum_probs=31.8
Q ss_pred cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cchhh-hhcCCCCcEEeccCCccC
Q 018662 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDSR-ISHLSNLKKLSLRQNLID 82 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~-~~~l~~L~~L~l~~~~~~ 82 (352)
.++|++|++++|.+++..+ +..+++|++|++++|.+. .+|.. +.++++|++|++++|.++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 3556666666666654322 233455555555555555 44443 555555555555555544
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.4e-29 Score=235.96 Aligned_cols=178 Identities=22% Similarity=0.303 Sum_probs=119.7
Q ss_pred cCcceEEccCCcCCCc----ccccCCCCCcEEEcCCCccCCc-ccccCCCCCcEEEccCCcccee----cCCCCCCCCEE
Q 018662 141 DTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKI 211 (352)
Q Consensus 141 ~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L 211 (352)
++|++|++++|.+... ..+..+++|+++++++|.+... ..+..+++|+.|++++|.+... .+..+++|++|
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 3444444444443331 2234455555555555554322 2255666666666666665543 35566777777
Q ss_pred EcCCCcCCCC-c-CccccccCcEEECCCCCCCC--C-CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCC
Q 018662 212 SLQSNRLTSM-K-GFEECIALEELYLSHNGISK--M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQI 284 (352)
Q Consensus 212 ~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~--~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i 284 (352)
++++|.+... + .+..+++|+.|++++|.+.+ + ..+..+++|++|++++|+++++ ..+..+++|+.|++++|.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 7777766554 2 46677888888888887762 3 3577888899999999988876 4677889999999999999
Q ss_pred cchHHHHHHHhccccCccEeeccCCCccccccccCCccHH
Q 018662 285 ESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFS 324 (352)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 324 (352)
+.++ ...+..+++|+.|++++|++.|++ |...|.
T Consensus 507 ~~~~---~~~~~~l~~L~~L~l~~N~~~~~~---~~~~~~ 540 (570)
T 2z63_A 507 KSVP---DGIFDRLTSLQKIWLHTNPWDCSC---PRIDYL 540 (570)
T ss_dssp SCCC---TTTTTTCTTCCEEECCSSCBCCCT---TTTHHH
T ss_pred CCCC---HHHhhcccCCcEEEecCCcccCCC---cchHHH
Confidence 8765 345677899999999999999998 544443
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.9e-29 Score=240.71 Aligned_cols=288 Identities=17% Similarity=0.177 Sum_probs=190.6
Q ss_pred cccccc--ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCc--chhhhhcC------CCCcEEeccCCccC
Q 018662 16 PDQAVE--IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTS--LDSRISHL------SNLKKLSLRQNLID 82 (352)
Q Consensus 16 ~~~~~~--~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~--l~~~~~~l------~~L~~L~l~~~~~~ 82 (352)
.+..+. ..++|++|++++|.+.+..+ +..+++|++|++++|+ ++. +|..+..+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 344445 67889999999998776432 4557899999999998 884 88877776 89999999999888
Q ss_pred cccccccc--ccccCCCCcEEEccCCCCC-CCCCCccccCCcEEEccCCCcccccCCcccccC-cceEEccCCcCCCcc-
Q 018662 83 DAAIEPIS--RWDALAGLEELILRDNKLM-KIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKME- 157 (352)
Q Consensus 83 ~~~~~~~~--~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~- 157 (352)
. .+. .+..+++|++|++++|.+. .+|.+..+++|++|++++|.+..++.....+++ |++|++++|.+..++
T Consensus 319 ~----ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 319 T----FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp S----CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred c----cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 4 223 5677889999999999888 777777788888888888888766665556677 888888888777643
Q ss_pred cccCC--CCCcEEEcCCCccCC--ccccc-------CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC
Q 018662 158 EIEHF--HDLQILEFGSNRLRV--MENLQ-------NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG 223 (352)
Q Consensus 158 ~~~~~--~~L~~L~l~~~~l~~--~~~~~-------~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~ 223 (352)
.+... ++|+++++++|.+.. +..+. .+++|+.|++++|.+... .+..+++|+.|++++|.++.+|.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 33333 367777777776642 23344 555677777777766644 23345666677776666665532
Q ss_pred --ccc-------cccCcEEECCCCCCCCCCC-CC--CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCC------CCC
Q 018662 224 --FEE-------CIALEELYLSHNGISKMEG-LS--TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLND------NQI 284 (352)
Q Consensus 224 --~~~-------~~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~------n~i 284 (352)
+.. +++|+.|++++|.++.++. +. .+++|++|++++|+++++ ..+..+++|+.|++++ |.+
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 111 2266666666666665542 32 566666666666666665 3455566666666633 333
Q ss_pred c-chHHHHHHHhccccCccEeeccCCCc
Q 018662 285 E-SLESIVEAVAGSRETLTTIYLENNPQ 311 (352)
Q Consensus 285 ~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 311 (352)
. .+| ..+..+++|++|++++|.+
T Consensus 555 ~~~~p----~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 555 LREWP----EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCCC----TTGGGCSSCCEEECCSSCC
T ss_pred cccCh----HHHhcCCCCCEEECCCCcC
Confidence 3 222 2234456666666666644
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=7.8e-28 Score=222.44 Aligned_cols=283 Identities=24% Similarity=0.276 Sum_probs=187.6
Q ss_pred cccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 19 AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 19 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.+...++|++|+++++.+++++ +..+++|++|++++|.++.++ +.++++|++|++++|.+++. + +..+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l---~---~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D---VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC---C---CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee---c---CCCCCcC
Confidence 3566688999999999999885 667788999999999988875 78888999999999888773 1 5567888
Q ss_pred cEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc
Q 018662 99 EELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 178 (352)
++|++++|.++.++ +..+++|++|++++|...+..+ ...+++|++|++++|.+..++ +..+++|+.+++++|.+..+
T Consensus 130 ~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 130 TYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccceec-cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee
Confidence 88888888887764 5666667777776664322211 223455666666666555543 44455555555555554433
Q ss_pred ccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc-------------------------------Ccccc
Q 018662 179 ENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-------------------------------GFEEC 227 (352)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~ 227 (352)
.+..+++|+.|++++|.+....+..+++|+.|++++|.+++.+ ....+
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l 285 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccc
Confidence 2444445555555554444444444444444444444443322 12345
Q ss_pred ccCcEEECCCCCCCC-CC---------CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHH-H--
Q 018662 228 IALEELYLSHNGISK-ME---------GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEA-V-- 294 (352)
Q Consensus 228 ~~L~~L~l~~n~l~~-~~---------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~-- 294 (352)
++|+.|++++|...+ ++ .++.+++|++|++++|++++++ +..+++|+.|++++|++++++....- .
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~ 364 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALN 364 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCTTGGGSSGGG
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCccccccccccC
Confidence 777778887775322 11 2567789999999999999984 88899999999999999976432110 0
Q ss_pred -----hccccCccEeeccCCCccccc
Q 018662 295 -----AGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 295 -----~~~~~~L~~L~l~~n~~~~~~ 315 (352)
...+..|..+++++|.++|.+
T Consensus 365 n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 365 NNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp TSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred CcEEecceeeecCccccccCcEEEEc
Confidence 012356788899999999888
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.6e-28 Score=218.41 Aligned_cols=279 Identities=21% Similarity=0.253 Sum_probs=201.7
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
..++.++++++.++.+|. .+++++++|++++|.+..+++ .+.++++|++|++++|.++... +..+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEE
Confidence 468999999999998876 556899999999999998865 5899999999999999988753 34577889999999
Q ss_pred ccCCCCCCCCCCccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC----cccccCCCCCcEEEcCCCccCC
Q 018662 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLRV 177 (352)
Q Consensus 103 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~ 177 (352)
+++|.+..+|... .++|++|++++|.+..++.. ...+++|++|++++|.+.. +..+..+ +|+++++++|.+..
T Consensus 109 L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 109 ISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999999888622 28899999999998877653 4457889999998888753 3345555 78888888887764
Q ss_pred cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC-CCCCCC
Q 018662 178 MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG-LSTLVN 251 (352)
Q Consensus 178 ~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~ 251 (352)
++.. ..++|+.|++++|.+... .+..+++|+.|++++|.+...+ .+..+++|+.|++++|.++.++. +..+++
T Consensus 187 l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp CCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred cCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence 4321 126777778877777665 4666777777777777777664 36677777777777777777653 566777
Q ss_pred CcEEEcCCCcCCCc--ccccC------CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 252 LHVLDVSSNKLTLV--DDIQN------LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 252 L~~L~l~~n~l~~~--~~~~~------~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
|++|++++|+++++ ..+.. .+.|+.+++++|++..+. .....+..+++|+.+++++|.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~-~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE-VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG-SCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc-cCcccccccchhhhhhccccc
Confidence 77777777777665 22222 355777777777766332 112345667777777777764
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.4e-29 Score=249.09 Aligned_cols=289 Identities=25% Similarity=0.250 Sum_probs=202.3
Q ss_pred cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC-cchhhhhc-CCCCcEEeccCCccCccccccccccccCCCC
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
...++|++|++++|.+++..+...+++|++|++++|.+. .+|..+.. +++|++|++++|.+++.. +..+..+++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L 320 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV---PPFFGSCSLL 320 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC---CGGGGGCTTC
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc---chHHhcCCCc
Confidence 333444444444444443322223455666666666555 55555444 366777777766666542 2345566777
Q ss_pred cEEEccCCCCC-CCCC--CccccCCcEEEccCCCccc-ccCCccccc-CcceEEccCCcCCC--cccccC--CCCCcEEE
Q 018662 99 EELILRDNKLM-KIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTD-TLKELYVSKNEVPK--MEEIEH--FHDLQILE 169 (352)
Q Consensus 99 ~~L~l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~~~~~~--~~~~~~--~~~L~~L~ 169 (352)
++|++++|.+. .+|. +..+++|++|++++|.+.+ ++.....+. +|++|++++|.+.. +..+.. +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 77777777666 4553 5667777777777777663 333333344 77777777776654 233333 67788888
Q ss_pred cCCCccC--CcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC
Q 018662 170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK 242 (352)
Q Consensus 170 l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~ 242 (352)
+.+|.+. .+..+..+++|+.|++++|.+... .+..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 8888875 456688889999999999987654 677788999999999988754 3 57788999999999999885
Q ss_pred -CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 243 -ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 243 -~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
++ .+..+++|++|++++|++++. ..+..+++|++|++++|.++... ...+..+++|+.|++++|++.|.+
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC---CGGGGGCTTCCEEECCSSEEESBC
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCCCEEECCCCccCCcC
Confidence 33 477889999999999999865 67888999999999999998321 234677899999999999998887
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.3e-28 Score=233.61 Aligned_cols=306 Identities=19% Similarity=0.228 Sum_probs=188.0
Q ss_pred ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
+++++|+++++.++++++ +..+++|++|++++|++..+++ .|.++++|++|++++|.+++. ....+..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---SSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC---CHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc---CHHHhccCCCCcE
Confidence 567777777777766543 3445667777777777765543 466677777777777766664 2223556667777
Q ss_pred EEccCCCCCCC--CC-CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCC--cccc--------------
Q 018662 101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPK--MEEI-------------- 159 (352)
Q Consensus 101 L~l~~~~l~~l--~~-~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~-------------- 159 (352)
|++++|.+..+ +. +..+++|++|++++|. +..++. ....+++|++|++++|.+.. +..+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 77777666633 22 5666666666666665 333321 23335555555555554433 1111
Q ss_pred ----------cCCCCCcEEEcCCCccCC----------------------------------------------------
Q 018662 160 ----------EHFHDLQILEFGSNRLRV---------------------------------------------------- 177 (352)
Q Consensus 160 ----------~~~~~L~~L~l~~~~l~~---------------------------------------------------- 177 (352)
..+++|+++++++|.+..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 123445555554443321
Q ss_pred --------------------------------------------------------------cc-cc-cCCCCCcEEEcc
Q 018662 178 --------------------------------------------------------------ME-NL-QNLTNLQELWLG 193 (352)
Q Consensus 178 --------------------------------------------------------------~~-~~-~~~~~L~~L~l~ 193 (352)
++ .+ ..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 00 11 246677777777
Q ss_pred CCcccee------cCCCCCCCCEEEcCCCcCCCCc----CccccccCcEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcC
Q 018662 194 RNRIKVV------NLCGLKCIKKISLQSNRLTSMK----GFEECIALEELYLSHNGISKMEG-LSTLVNLHVLDVSSNKL 262 (352)
Q Consensus 194 ~~~l~~~------~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l 262 (352)
+|.+... .+..+++|++|++++|.++..+ .+..+++|+.|++++|+++.++. +..+++|++|++++|++
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc
Confidence 7776653 2566788888888888887764 26778889999999998888753 56677788888888877
Q ss_pred CCcc-c------------------ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccH
Q 018662 263 TLVD-D------------------IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKF 323 (352)
Q Consensus 263 ~~~~-~------------------~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 323 (352)
+.++ . ...+++|++|++++|+++.+|+. ..+++|+.|++++|.+. .++...|
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-----~~l~~L~~L~Ls~N~l~----~~~~~~~ 493 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-----SLFPVLLVMKISRNQLK----SVPDGIF 493 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-----GGCTTCCEEECCSSCCC----CCCTTGG
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-----ccCccCCEEecCCCccC----CcCHHHH
Confidence 6542 1 12566777777777777766531 34577777777777443 3444445
Q ss_pred HHHHHHHHHhhhhccCceeceeeeeccC
Q 018662 324 SQIYSRLILMYFFRSHSVLGFSFCQDYG 351 (352)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
.. +.++.++++++|++.+
T Consensus 494 ~~----------l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 494 DR----------LTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GG----------CTTCCEEECCSSCBCC
T ss_pred hc----------CcccCEEEecCCCccC
Confidence 43 5677777887777654
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-27 Score=221.37 Aligned_cols=261 Identities=21% Similarity=0.243 Sum_probs=161.4
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
.++++|+++++.+++++. .+++|++|++++|.++++| .+.++++|++|++++|.+++.. . ..++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp----~---~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP----D---LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCC----C---CCTTCCEEEC
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccC----C---CcccccEEEC
Confidence 344444444444444432 2255666666666666655 3566666666666666655421 1 1235666666
Q ss_pred cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (352)
Q Consensus 104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 183 (352)
++|.+..+|.+..+++|++|++++|.+.+++.. ..+|++|++++|.+..++.++.+++|+++++++|.+..++. .
T Consensus 181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~ 255 (454)
T 1jl5_A 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--L 255 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--C
T ss_pred cCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--c
Confidence 666666666566666666666666666554332 24666666666666655556666666666666666654332 2
Q ss_pred CCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 184 ~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 263 (352)
.++|+.|++++|.+..... ..++|+.|++++|.+++.+.+ .++|+.|++++|.+.+++.+ .++|++|++++|+++
T Consensus 256 ~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLI 330 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCS
T ss_pred ccccCEEECCCCcccccCc-ccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCccc
Confidence 3566666666666555321 235677777777766655432 25677777777776665432 257888888888888
Q ss_pred CcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 264 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
+++.. +++|+.|++++|.++.+|. .+++|++|++++|++.+
T Consensus 331 ~lp~~--~~~L~~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 331 ELPAL--PPRLERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCCCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred ccccc--CCcCCEEECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence 76432 5789999999999887764 35889999999998776
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.5e-29 Score=236.75 Aligned_cols=134 Identities=22% Similarity=0.229 Sum_probs=89.0
Q ss_pred CCCCCCCCEEEcCCCcCCCCc---CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCC--c-ccccCCCC
Q 018662 202 LCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL--V-DDIQNLSR 273 (352)
Q Consensus 202 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~--~-~~~~~~~~ 273 (352)
+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++ + ..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 344555555555555554431 345666777777777766553 235667788888888887762 2 56777888
Q ss_pred CCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeeccCC
Q 018662 274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDYGT 352 (352)
Q Consensus 274 L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (352)
|++|++++|.++.+. ...+..+++|++|++++|.+ ..++...|.. +.++..+++++|++.++
T Consensus 472 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~----------l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 472 LTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQL----KSVPDGIFDR----------LTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCC----SCCCTTTTTT----------CTTCCEEECCSSCBCCC
T ss_pred CCEEECCCCccccCC---hhhhhcccCCCEEeCCCCcC----CCCCHHHhhc----------ccCCcEEEecCCcccCC
Confidence 888888888888653 23456778888888888854 3445555543 56788888888887653
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.5e-28 Score=238.11 Aligned_cols=258 Identities=18% Similarity=0.172 Sum_probs=140.0
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCc--chhhhhcCC-------CCcEEeccCCccCccccccc
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTS--LDSRISHLS-------NLKKLSLRQNLIDDAAIEPI 89 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~ 89 (352)
..++|++|++++|.+.+..+ +..+++|++|++++|+ ++. +|..+.+++ +|++|++++|.++.. |. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~-~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PA-S 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CC-H
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CC-h
Confidence 56778888888877655422 3445777888888776 664 666555554 777777777777632 11 0
Q ss_pred cccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccC-cceEEccCCcCCCcc-cccCCC--CC
Q 018662 90 SRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKME-EIEHFH--DL 165 (352)
Q Consensus 90 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~-~~~~~~--~L 165 (352)
..+..+++|++|++++|.+..+|.+..+++|+.|++++|.+..++.....+++ |+.|++++|.+..++ .+.... +|
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 14566777777777777777776666777777777777777655555555566 777777777665532 222222 25
Q ss_pred cEEEcCCCccCC-ccccc------CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--cc-------c
Q 018662 166 QILEFGSNRLRV-MENLQ------NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FE-------E 226 (352)
Q Consensus 166 ~~L~l~~~~l~~-~~~~~------~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~-------~ 226 (352)
+.|++++|.+.. ++.+. .+++|+.|++++|.+... .+..+++|+.|++++|.+..+|. +. .
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 666666555531 11111 223455555555544433 12234445555555544443321 11 1
Q ss_pred cccCcEEECCCCCCCCCCC-CC--CCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCC
Q 018662 227 CIALEELYLSHNGISKMEG-LS--TLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLND 281 (352)
Q Consensus 227 ~~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~ 281 (352)
+++|+.|++++|+++.++. +. .+++|+.|++++|.++++ ..+..+++|+.|++++
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence 1244445555444444432 22 344444444444444444 2333444444444433
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.4e-27 Score=230.52 Aligned_cols=294 Identities=26% Similarity=0.266 Sum_probs=206.0
Q ss_pred ccccccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC------cchh----hhhcCCCCcEEeccCCccCccc
Q 018662 18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT------SLDS----RISHLSNLKKLSLRQNLIDDAA 85 (352)
Q Consensus 18 ~~~~~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~------~l~~----~~~~l~~L~~L~l~~~~~~~~~ 85 (352)
..+...++|+.|+++++.++++.+ +..+++|++|+++++... .+|. .+..+++|++|++++|.+++..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 445566788888888888776543 233455555555544222 1221 2444555555555555544432
Q ss_pred cccccccccCC----------------------------CCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccc-c
Q 018662 86 IEPISRWDALA----------------------------GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSS-H 134 (352)
Q Consensus 86 ~~~~~~~~~l~----------------------------~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~-~ 134 (352)
+ ..+..++ .|+.|++++|.+..+++ +..+++|+.|++++|.+.+. +
T Consensus 346 ~---~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 346 S---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp T---TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred h---hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 1 1223333 45555555555554432 56677777777777776542 2
Q ss_pred -CCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcccee---cCCC
Q 018662 135 -GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVV---NLCG 204 (352)
Q Consensus 135 -~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l~~~---~~~~ 204 (352)
.....+++|++|++++|.+... ..+..+++|+.+++.++.+. .+..+..+++|+.|++++|.+... .+..
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 2333467777777777776542 45667788888888887764 335578889999999999988876 4778
Q ss_pred CCCCCEEEcCCCcCCCCc----------CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662 205 LKCIKKISLQSNRLTSMK----------GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQN 270 (352)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~ 270 (352)
+++|+.|++++|.++..+ .+..+++|+.|++++|+++.++. +..+++|+.|++++|+++++ ..+..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 899999999999887642 26788999999999999998874 78899999999999999988 45678
Q ss_pred CCCCCeEEcCCCCCcchHHHHHHHhc-cccCccEeeccCCCccccccc
Q 018662 271 LSRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNPQNLQIIL 317 (352)
Q Consensus 271 ~~~L~~L~l~~n~i~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~ 317 (352)
+++|+.|++++|.++.++.. .+. .+++|+.|++++|||.|++..
T Consensus 583 l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCcCCccChh---HhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999987643 233 568999999999999999853
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-27 Score=211.75 Aligned_cols=283 Identities=21% Similarity=0.304 Sum_probs=228.2
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCC-CC-CccccCCcEE
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-VSIFKKLSVF 123 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-~~~~~~L~~L 123 (352)
.+++.++++++.++.+|..+ .+++++|++++|.++... ...+..+++|++|++++|.+..+ |. +..+++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeC---hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 47999999999999998755 379999999999998853 33577899999999999999987 43 8889999999
Q ss_pred EccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcc
Q 018662 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l 197 (352)
++++|.+..++.... ++|++|++++|.+... ..+..+++|+++++++|.+. ....+..+++|+.|++++|.+
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999999987665433 7999999999998874 34889999999999999884 345678899999999999998
Q ss_pred ceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-ccccCCC
Q 018662 198 KVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS 272 (352)
Q Consensus 198 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~ 272 (352)
........++|+.|++++|.++..+ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|+++.+ ..+..++
T Consensus 184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 8775555589999999999998773 5788999999999999998864 477889999999999999988 5688899
Q ss_pred CCCeEEcCCCCCcchHHHHHH---HhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeee
Q 018662 273 RLEDLWLNDNQIESLESIVEA---VAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFC 347 (352)
Q Consensus 273 ~L~~L~l~~n~i~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (352)
+|++|++++|.|+.++..... .....+.++.|++++||+... .+++..|.. ++++..+++++|
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~----------~~~l~~l~L~~N 329 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRC----------VYVRAAVQLGNY 329 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTT----------CCCGGGEEC---
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCcccccc----------ccceeEEEeccc
Confidence 999999999999987632110 011247899999999987532 234444543 455666666665
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=3.1e-27 Score=229.79 Aligned_cols=311 Identities=22% Similarity=0.305 Sum_probs=202.6
Q ss_pred ccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccc-----cc-ccccccc
Q 018662 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAA-----IE-PISRWDA 94 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~-----~~-~~~~~~~ 94 (352)
++|++|+++++.++++++ +..+++|++|++++|.+..++ ..+.++++|++|+++++...... +. ....+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 359999999999998764 455799999999999999664 46899999999999987544211 00 1125678
Q ss_pred CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCccc--ccCCcc---cccCcceEEccCCcCCCc--ccccCCCCC
Q 018662 95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITS--SHGLSN---VTDTLKELYVSKNEVPKM--EEIEHFHDL 165 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~--~~~~~~---~~~~L~~L~l~~~~~~~~--~~~~~~~~L 165 (352)
+++|++|++++|.+..+++ +..+++|++|++++|.+.. +..... ..++|+.|++++|.+... ..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 9999999999999998765 7788889999988875321 111111 123556666665555442 334555555
Q ss_pred cEEEcCCCccC--Cc-ccccCCCCCcEEEccCCcccee-----------------------------cCCCCCCCCEEEc
Q 018662 166 QILEFGSNRLR--VM-ENLQNLTNLQELWLGRNRIKVV-----------------------------NLCGLKCIKKISL 213 (352)
Q Consensus 166 ~~L~l~~~~l~--~~-~~~~~~~~L~~L~l~~~~l~~~-----------------------------~~~~~~~L~~L~l 213 (352)
+.|++++|.+. .+ ..+..+++|+.+++++|.+... .+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 55555555542 11 2344444444454444443222 3455667777777
Q ss_pred CCCcCCCCc--CccccccCcEEECCCCCCCCCC----------CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662 214 QSNRLTSMK--GFEECIALEELYLSHNGISKME----------GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL 279 (352)
Q Consensus 214 ~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l 279 (352)
++|.++..+ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.+ ..+..+++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 777766664 3566777777777777766531 255667777777777777766 24677777888888
Q ss_pred CCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662 280 NDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY 350 (352)
Q Consensus 280 ~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
++|.++.++ ...+..+++|+.|++++|. +..++...|.. .++++..+++++|++.
T Consensus 568 s~N~l~~l~---~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~---------~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 568 GLNNLNTLP---ASVFNNQVSLKSLNLQKNL----ITSVEKKVFGP---------AFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCCCC---TTTTTTCTTCCEEECTTSC----CCBCCHHHHHH---------HHTTCSEEECTTCCCC
T ss_pred CCCCCCcCC---HhHhCCCCCCCEEECCCCc----CCccChhHhcc---------cccccCEEEccCCCcc
Confidence 888877665 3345667788888888884 44445444431 2466777777776654
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.7e-27 Score=227.21 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=101.7
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.|+++++|++++|+|+.+++ +..+++|++|++++|+++++++. |.++++|++|+|++|.++.. +...|..+++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L 126 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSL 126 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCC
Confidence 35678999999999998875 34468899999999999988764 88899999999999988875 33457778889
Q ss_pred cEEEccCCCCCCCCC--CccccCCcEEEccCCCccccc--CCcccccCcceEEccCCcCC
Q 018662 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVP 154 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 154 (352)
++|++++|.++.+++ +..+++|++|++++|.+.... .....+++|++|++++|.+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999999988888775 778888888888888876542 33344677888887776543
No 40
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.3e-26 Score=220.73 Aligned_cols=260 Identities=28% Similarity=0.263 Sum_probs=223.3
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
+++.|+++++.++.+|. .++++|++|++++|.++.+|. .+++|++|++++|.++... . .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp-----~--~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-----V--LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC-----C--CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC-----C--CCCCCCEEECc
Confidence 58999999999998876 455899999999999999987 6799999999999988642 1 57899999999
Q ss_pred CCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCC
Q 018662 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184 (352)
Q Consensus 105 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 184 (352)
+|.+..+|. .+++|+.|++++|.+..++.. .++|++|++++|.+..++. .+++|+.|++.+|.+..++ ..+
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~ 180 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLP 180 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCC
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccC
Confidence 999999987 678999999999999887653 4899999999999887543 4578999999999998766 567
Q ss_pred CCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCC
Q 018662 185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264 (352)
Q Consensus 185 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 264 (352)
++|+.|++++|.+..... ..++|+.|++++|.++.++. .+++|+.|++++|.++.++ ..+++|+.|++++|+++.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred CCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc
Confidence 899999999999887532 35899999999999998874 3588999999999999988 566899999999999998
Q ss_pred cccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
++. .+++|+.|++++|.|+.+|. .+..+++|+.|++++|++.+..
T Consensus 256 lp~--~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 256 LPM--LPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCC--CCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSCCCCHHH
T ss_pred CCc--ccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCCCCCCcC
Confidence 865 67899999999999998764 3567899999999999877655
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.1e-26 Score=212.64 Aligned_cols=279 Identities=24% Similarity=0.286 Sum_probs=143.7
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
+++|+++++.++++|. .+++|++|++++|.++++|.. +++|++|++++|.+++.. . ..++|++|++++
T Consensus 73 l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~--~~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----D--LPPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----S--CCTTCCEEECCS
T ss_pred CCEEEecCCccccCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc-----C--CCCCCCEEECcC
Confidence 3555555555555443 234555555555555544432 244555555555444321 0 013455555555
Q ss_pred CCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCC--------------------C
Q 018662 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD--------------------L 165 (352)
Q Consensus 106 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------L 165 (352)
|.+.++|.+..+++|++|++++|.+.+++.. ..+|++|++++|.+..++.++.+++ |
T Consensus 141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 5444444444444555555555444443221 1244444444444444334444444 4
Q ss_pred cEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC
Q 018662 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245 (352)
Q Consensus 166 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 245 (352)
+++++++|.+..++.+..+++|+.|++++|.+.... ...++|+.|++++|.+..+|.. +++|+.|++++|.+++++.
T Consensus 218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESC
T ss_pred cEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccC
Confidence 455555544443334445555555555555444331 1224555555555555544322 2455555555555555443
Q ss_pred CCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325 (352)
Q Consensus 246 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 325 (352)
+ +++|+.|++++|++++++.+ .++|+.|++++|.++.++. .+++|+.|++++|.+. .+|.
T Consensus 295 ~--~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L~~N~l~----~lp~----- 354 (454)
T 1jl5_A 295 L--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPA-------LPPRLERLIASFNHLA----EVPE----- 354 (454)
T ss_dssp C--CTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCS----CCCC-----
T ss_pred c--CCcCCEEECcCCcCCcccCC--cCcCCEEECCCCccccccc-------cCCcCCEEECCCCccc----cccc-----
Confidence 2 24566666666666554321 2478888888888876553 2478888888888543 4454
Q ss_pred HHHHHHHhhhhccCceeceeeeeccC
Q 018662 326 IYSRLILMYFFRSHSVLGFSFCQDYG 351 (352)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (352)
...+++++++++|...|
T Consensus 355 ---------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 ---------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---------CCTTCCEEECCSSCCSS
T ss_pred ---------hhhhccEEECCCCCCCc
Confidence 14678888888887655
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-27 Score=212.15 Aligned_cols=279 Identities=23% Similarity=0.294 Sum_probs=228.0
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEE
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF 123 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L 123 (352)
.+++.++++++.++.+|..+ .++|++|++++|.++... ...+..+++|++|++++|.+..+++ +..+++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 47999999999999999765 479999999999998753 3457789999999999999998743 8889999999
Q ss_pred EccCCCcccccCCcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccC----CcccccCCCCCcEEEccCCcc
Q 018662 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~L~~L~l~~~~l 197 (352)
++++|.+..++.... ++|++|++++|.+.... .+..+++|++|++++|.+. .+..+..+ +|+.|++++|.+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999999987765443 79999999999998853 4889999999999999885 23445566 899999999998
Q ss_pred ceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc-ccccCCC
Q 018662 198 KVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS 272 (352)
Q Consensus 198 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~ 272 (352)
........++|+.|++++|.++..+ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|+++.+ ..+..++
T Consensus 185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 264 (332)
T 2ft3_A 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264 (332)
T ss_dssp SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT
T ss_pred CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc
Confidence 8875555589999999999998874 5888999999999999999875 478889999999999999988 5688899
Q ss_pred CCCeEEcCCCCCcchHHHHHHHhcc------ccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceee
Q 018662 273 RLEDLWLNDNQIESLESIVEAVAGS------RETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSF 346 (352)
Q Consensus 273 ~L~~L~l~~n~i~~~~~~~~~~~~~------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (352)
+|+.|++++|.++.++. ..+.. .+.|+.|++++||+... .++...|.. ++++..+++++
T Consensus 265 ~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~----------l~~L~~l~l~~ 329 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRC----------VTDRLAIQFGN 329 (332)
T ss_dssp TCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTT----------BCCSTTEEC--
T ss_pred cCCEEECCCCCCCccCh---hHccccccccccccccceEeecCccccc--ccCcccccc----------cchhhhhhccc
Confidence 99999999999998763 22222 47799999999987532 234444543 67777777776
Q ss_pred e
Q 018662 347 C 347 (352)
Q Consensus 347 ~ 347 (352)
|
T Consensus 330 n 330 (332)
T 2ft3_A 330 Y 330 (332)
T ss_dssp -
T ss_pred c
Confidence 6
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.3e-27 Score=232.94 Aligned_cols=283 Identities=24% Similarity=0.252 Sum_probs=167.1
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCC-cc-hhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
.++++++|++++|.++++.+ +..+++|++|++++|... .+ |..|.++++|++|++++|.+.... +..|..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCcc
Confidence 67889999999999988753 455688999999998544 66 556888899999999998888753 345677888
Q ss_pred CcEEEccCCCCCC-CCC---CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCcCCCc--ccccCC--CCCcE
Q 018662 98 LEELILRDNKLMK-IPD---VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKM--EEIEHF--HDLQI 167 (352)
Q Consensus 98 L~~L~l~~~~l~~-l~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~--~~L~~ 167 (352)
|++|++++|.+.. ++. +..+++|++|++++|.+.+... ....+++|++|++++|.+... ..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 8999998888875 332 7788888999998888877543 345578888888888877652 333333 45555
Q ss_pred EEcCCCccCC--cccccCCCC------CcEEEccCCcccee---------------------------------------
Q 018662 168 LEFGSNRLRV--MENLQNLTN------LQELWLGRNRIKVV--------------------------------------- 200 (352)
Q Consensus 168 L~l~~~~l~~--~~~~~~~~~------L~~L~l~~~~l~~~--------------------------------------- 200 (352)
++++.|.+.. +..+..++. |+.|++++|.+...
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 5555554431 112222222 44455444422110
Q ss_pred cCCC--CCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCC
Q 018662 201 NLCG--LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLS 272 (352)
Q Consensus 201 ~~~~--~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~ 272 (352)
.+.. .++++.|++++|.+...+ .+..+++|+.|++++|.+.++. .+..+++|++|++++|.++++ ..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 0000 134555555555444331 2444555555555555554431 244445555555555555444 3344455
Q ss_pred CCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 273 ~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+|+.|++++|.++.++ ...+..+++|++|++++|.
T Consensus 339 ~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TCCEEECCSCCCCCCC---SSCSCSCCCCCEEEEETCC
T ss_pred CCCEEECCCCCCCccC---hhhhcCCCCCCEEECCCCC
Confidence 5555555555554433 1223444555555555553
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=212.65 Aligned_cols=244 Identities=25% Similarity=0.342 Sum_probs=179.3
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
..+.+++++..++.+|. .++++++.|++++|.+..++. .|.++++|++|++++|.++.. ....|..+++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---CGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---ChhhccCCccCCEEEC
Confidence 45677888888888775 566788888888888887654 478888888888888887765 3345667788888888
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCccc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMEN 180 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~ 180 (352)
++|.+..++. +..+++|++|++++|.+..++.. .+..+++|++|++.++. +..+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~i-- 176 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY---------------------AFNRIPSLRRLDLGELKRLSYI-- 176 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT---------------------TTTTCTTCCEEECCCCTTCCEE--
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHH---------------------HhhhCcccCEeCCCCCCCccee--
Confidence 8888877765 66777777777777776654321 23334444444444321 1110
Q ss_pred ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcC
Q 018662 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS 258 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~ 258 (352)
....+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++ ..+..+++|++|+++
T Consensus 177 -----------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 177 -----------------SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp -----------------CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -----------------CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 0013445667777777777777777778888999999999988876 357888999999999
Q ss_pred CCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 259 ~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+|+++++ ..+..+++|+.|++++|.++.++ ...+..+++|+.|++++|||.|++
T Consensus 240 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TCCCCEECTTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCceeEEChhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcCCCCccCCC
Confidence 9999887 56788899999999999999776 345677899999999999999988
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=9.5e-27 Score=231.14 Aligned_cols=304 Identities=19% Similarity=0.222 Sum_probs=241.4
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+..++++++++.+|. .++++++|++++|.++.+ +..|.++++|++|++++|...... ....|..+++|++|+++
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECT
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--CHHHhcCCCCCCEEECC
Confidence 3678999999999997 889999999999999977 456999999999999999544321 23567889999999999
Q ss_pred CCCCCCC-CC-CccccCCcEEEccCCCcccc-cC--CcccccCcceEEccCCcCCCc---ccccCCCCCcEEEcCCCccC
Q 018662 105 DNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-HG--LSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR 176 (352)
Q Consensus 105 ~~~l~~l-~~-~~~~~~L~~L~l~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~l~ 176 (352)
+|.+..+ |. +..+++|++|++++|.+.+. +. ....+++|++|++++|.+... ..++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999976 43 88999999999999999863 22 245689999999999998773 46899999999999999886
Q ss_pred Cc--ccccCC--CCCcEEEccCCcccee---cCCCCCC------CCEEEcCCCcCCCC-c-C------------------
Q 018662 177 VM--ENLQNL--TNLQELWLGRNRIKVV---NLCGLKC------IKKISLQSNRLTSM-K-G------------------ 223 (352)
Q Consensus 177 ~~--~~~~~~--~~L~~L~l~~~~l~~~---~~~~~~~------L~~L~l~~~~~~~~-~-~------------------ 223 (352)
.. ..+..+ ++|+.|+++.|.+... .+..+++ |+.|++++|.+... + .
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 33 445555 7899999999987765 3333333 99999999865432 0 0
Q ss_pred ------------------ccc--cccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662 224 ------------------FEE--CIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL 279 (352)
Q Consensus 224 ------------------~~~--~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l 279 (352)
+.. .++|+.|++++|.+..+ ..+..+++|+.|++++|+++++ ..+..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 111 36899999999998875 3478889999999999999887 56888999999999
Q ss_pred CCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeeecc
Q 018662 280 NDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQDY 350 (352)
Q Consensus 280 ~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
++|.++.+. ...+..+++|+.|++++|. +..++...|.. +.++.++++++|...
T Consensus 322 s~N~l~~~~---~~~~~~l~~L~~L~L~~N~----i~~~~~~~~~~----------l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 322 SYNLLGELY---SSNFYGLPKVAYIDLQKNH----IAIIQDQTFKF----------LEKLQTLDLRDNALT 375 (844)
T ss_dssp ESCCCSCCC---SCSCSSCTTCCEEECCSCC----CCCCCSSCSCS----------CCCCCEEEEETCCSC
T ss_pred CCCCCCccC---HHHhcCCCCCCEEECCCCC----CCccChhhhcC----------CCCCCEEECCCCCCC
Confidence 999998653 3456788999999999995 45556665643 567777777777643
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=212.52 Aligned_cols=265 Identities=20% Similarity=0.249 Sum_probs=193.3
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
.....+++++.++.+|. .++++|++|++++|.++.++. .+.++++|++|++++|.+++.. ...+..+++|++|++
T Consensus 32 ~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCCCCCCEEEC
Confidence 34558899999999886 666899999999999998877 5899999999999999988753 345677899999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCc-CCCcccccCCCCCcEEEcCCCccCCc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNE-VPKMEEIEHFHDLQILEFGSNRLRVM 178 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~ 178 (352)
++|.+..++. +..+++|++|++++|.+..++. ....+++|++|++++|. +... ..
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------~~ 167 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--------------------QR 167 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------------------CT
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------------------CH
Confidence 9999998876 6788999999999998887655 33446667777776663 3221 11
Q ss_pred ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--ccccccCcEEECCCCCCCCCC-----CCCC
Q 018662 179 ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-----GLST 248 (352)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~-----~~~~ 248 (352)
..+..+++|+.|++++|.+... .+..+++|++|++++|.+...+. +..+++|+.|++++|.+++++ ....
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 2234444455555555544443 34455666666666666655542 334677777777777776642 2334
Q ss_pred CCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 249 LVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 249 ~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
...++.++++++.+.+. +.+..+++|++|++++|.++.++. ..+..+++|++|++++|++.|++.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH---HHHhcCCCCCEEEeeCCCccCcCC
Confidence 56788888988888653 456788999999999999997763 445778999999999999999883
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.6e-26 Score=211.61 Aligned_cols=244 Identities=25% Similarity=0.334 Sum_probs=171.9
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
..+.+++++..++.+|. .+++++++|++++|.++.++ ..|.++++|++|++++|.++.. ....|..+++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---EVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc---ChhhccCcccCCEEEC
Confidence 34567777777777764 55677788888888777664 3477777788888877777764 2234556777777777
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc-cCCccc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR-LRVMEN 180 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~ 180 (352)
++|.+..++. +..+++|++|++++|.+..++.. .+..+++|+.|+++++. +..++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~i~- 188 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY---------------------AFNRVPSLMRLDLGELKKLEYIS- 188 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT---------------------TTTTCTTCCEEECCCCTTCCEEC-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHh---------------------HHhcCCcccEEeCCCCCCccccC-
Confidence 7777776654 55666777777776666544321 23334444444444321 11100
Q ss_pred ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcC
Q 018662 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVS 258 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~ 258 (352)
...+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.++. .+..+++|+.|+++
T Consensus 189 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 189 ------------------EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp ------------------TTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred ------------------hhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence 0134456677777777777777777778888999999999888753 47788899999999
Q ss_pred CCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 259 ~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+|+++++ ..+..+++|+.|++++|.++.++ ...+..+++|+.|++++|||.|++
T Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSSCEECST
T ss_pred CCcCceECHHHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCCCcCCCC
Confidence 9999877 56788899999999999999766 345677899999999999999998
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.7e-26 Score=220.19 Aligned_cols=146 Identities=23% Similarity=0.310 Sum_probs=126.0
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+..++++.+++.+|. .+|+++++|++++|.|+++++ .|.++++|++|++++|.++.+ +...|..+++|++|+++
T Consensus 33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc
Confidence 4567899999999986 678999999999999999986 599999999999999999886 33467889999999999
Q ss_pred CCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC---cccccCCCCCcEEEcCCCcc
Q 018662 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l 175 (352)
+|.++.+|. +..+++|++|++++|.+..+++. +..+++|++|++++|.+.. +..+..+++|++|++++|.+
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999999886 78899999999999999988764 4558999999999998875 34567788888888877754
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2e-24 Score=205.69 Aligned_cols=239 Identities=26% Similarity=0.307 Sum_probs=209.0
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
++++.|++++|.++.++. .+++|++|++++|.++++|. .+++|++|++++|.++... . .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~----~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP----A---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC----C---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC----C---CCCCcCEEEC
Confidence 789999999999999987 68999999999999999987 7899999999999998742 1 4688999999
Q ss_pred cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (352)
Q Consensus 104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 183 (352)
++|.+..+|. .+++|++|++++|.+..++. ...+|+.|++++|.+..++ ..+++|+.|++++|.+..++. .
T Consensus 129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~ 199 (622)
T 3g06_A 129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--L 199 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--C
T ss_pred CCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--c
Confidence 9999999986 35899999999999987654 3578999999999998866 567899999999999876544 3
Q ss_pred CCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 184 ~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 263 (352)
.++|+.|++++|.+.... ..+++|+.|++++|.++.+| ..+++|+.|++++|.++.++. .+++|+.|++++|+++
T Consensus 200 ~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC
T ss_pred cchhhEEECcCCcccccC-CCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC
Confidence 578999999999988763 23589999999999999887 567899999999999999887 6789999999999999
Q ss_pred Cc-ccccCCCCCCeEEcCCCCCcchH
Q 018662 264 LV-DDIQNLSRLEDLWLNDNQIESLE 288 (352)
Q Consensus 264 ~~-~~~~~~~~L~~L~l~~n~i~~~~ 288 (352)
.+ +.+..+++|+.|++++|+++...
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcC
Confidence 88 56889999999999999999643
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-25 Score=195.77 Aligned_cols=239 Identities=22% Similarity=0.262 Sum_probs=152.4
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+.++++++.++.+|. .+++++++|++++|.++.+|.. +.++++|++|++++|.++.... ....+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-CSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-EEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC-cccccccccccCEEECC
Confidence 4678999999999886 6678999999999999999876 7899999999999998875321 12344568899999999
Q ss_pred CCCCCCCCC-CccccCCcEEEccCCCcccccC--CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662 105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181 (352)
Q Consensus 105 ~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 181 (352)
+|.+..++. +..+++|++|++++|.+..... ....+++|++|++++|.+... ....+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~ 146 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIF 146 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------------------STTTT
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------------------chhhc
Confidence 998887765 6778888888888887766543 222244444444444433221 11223
Q ss_pred cCCCCCcEEEccCCccce--e--cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCc
Q 018662 182 QNLTNLQELWLGRNRIKV--V--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLH 253 (352)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~--~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~ 253 (352)
..+++|+.|++++|.+.. . .+..+++|++|++++|.++..+ .+..+++|+.|++++|.+.+++. +..+++|+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 444555555555554433 1 3444555555555555555441 34455666666666666655432 44556666
Q ss_pred EEEcCCCcCCCc--ccccCC-CCCCeEEcCCCCCcc
Q 018662 254 VLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIES 286 (352)
Q Consensus 254 ~L~l~~n~l~~~--~~~~~~-~~L~~L~l~~n~i~~ 286 (352)
+|++++|++++. ..+..+ ++|++|++++|+++.
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 666666666554 334444 356666666666553
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=203.14 Aligned_cols=233 Identities=19% Similarity=0.242 Sum_probs=137.4
Q ss_pred cCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceE
Q 018662 67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146 (352)
Q Consensus 67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 146 (352)
.+++|++|++++|.++.. ....+..+++|++|++++|.+..++++..+++|++|++++|.+.+++. .++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 334444444444444442 112333444444444444444433334444445555555444443321 2445555
Q ss_pred EccCCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cC-CCCCCCCEEEcCCCcCCC
Q 018662 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NL-CGLKCIKKISLQSNRLTS 220 (352)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~-~~~~~L~~L~l~~~~~~~ 220 (352)
++++|.+.... ...+++|++|++++|.+... ..+..+++|+.|++++|.+... .+ ..+++|+.|++++|.++.
T Consensus 105 ~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 105 HAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 55555444421 12245566666666655433 2345566666777766666654 22 245777777777777777
Q ss_pred CcCccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccc
Q 018662 221 MKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298 (352)
Q Consensus 221 ~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~ 298 (352)
.+....+++|+.|++++|.+++++ .+..+++|++|++++|+++.+ ..+..+++|+.|++++|+++. +....++..+
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~--~~~~~~~~~~ 261 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKN 261 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH--HHHHHHHHTC
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC--cCHHHHHhcc
Confidence 665556788888888888887753 466778888888888888876 456777888888888888873 2334555667
Q ss_pred cCccEeeccCC
Q 018662 299 ETLTTIYLENN 309 (352)
Q Consensus 299 ~~L~~L~l~~n 309 (352)
++|+.++++++
T Consensus 262 ~~L~~l~l~~~ 272 (317)
T 3o53_A 262 QRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred ccceEEECCCc
Confidence 78888877744
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=3e-25 Score=195.41 Aligned_cols=239 Identities=19% Similarity=0.235 Sum_probs=165.7
Q ss_pred CcccEEEcCCCCCC---cchhhhhcCCCCcEEeccC-CccCccccccccccccCCCCcEEEccCCCCC-CCCC-CccccC
Q 018662 46 TNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLM-KIPD-VSIFKK 119 (352)
Q Consensus 46 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~~ 119 (352)
.++++|+++++.+. .+|..+.++++|++|++++ |.+.+.. +..+..+++|++|++++|.+. .+|. +..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~---p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC---CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccC---ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 57888999998887 4777888899999999985 7777653 335667888888888888887 4555 777888
Q ss_pred CcEEEccCCCcccc-cCCcccccCcceEEccCCcCCC--cccccCCC-CCcEEEcCCCccCCcccccCCCCCcEEEccCC
Q 018662 120 LSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFH-DLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195 (352)
Q Consensus 120 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 195 (352)
|++|++++|.+.+. +.....+++|++|++++|.+.. +..+..++ +|+++++++|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N---------------------- 184 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---------------------- 184 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS----------------------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC----------------------
Confidence 88888888887743 3333445566666666665542 23344443 4455555444
Q ss_pred cccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCC-CCCCCCCCCCcEEEcCCCcCCCc--cc
Q 018662 196 RIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DD 267 (352)
Q Consensus 196 ~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~--~~ 267 (352)
.+... .+..++ |+.|++++|.+... ..+..+++|+.|++++|.+.. ++.+..+++|++|++++|++++. ..
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 44322 223333 66666666665543 245667778888888887765 34567778899999999998744 56
Q ss_pred ccCCCCCCeEEcCCCCCcc-hHHHHHHHhccccCccEeeccCCCccccc
Q 018662 268 IQNLSRLEDLWLNDNQIES-LESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 268 ~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+..+++|++|++++|++++ +|. ...+++|+.+++++|++.|..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~-----~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQ-----GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCC-----STTGGGSCGGGTCSSSEEEST
T ss_pred HhcCcCCCEEECcCCcccccCCC-----CccccccChHHhcCCCCccCC
Confidence 7888999999999999883 332 156789999999999976654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.2e-24 Score=189.35 Aligned_cols=244 Identities=24% Similarity=0.284 Sum_probs=172.6
Q ss_pred cEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCC---C-CccccCCcEEE
Q 018662 49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP---D-VSIFKKLSVFD 124 (352)
Q Consensus 49 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~---~-~~~~~~L~~L~ 124 (352)
+.++++++.++.+|..+ .++|++|++++|.++.. +...|..+++|++|++++|.+..+. . +..+++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45666666666666543 24666666666666543 1123445666666666666655331 1 33445555555
Q ss_pred ccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc---ccccCCCCCcEEEccCCcccee-
Q 018662 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV- 200 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~~~l~~~- 200 (352)
+++|.+..++. .+..+++|++|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 85 Ls~n~i~~l~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 85 LSFNGVITMSS----------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CCSCSEEEEEE----------------------EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCCCccccChh----------------------hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 55555443322 345566666666666665433 3467788899999999887765
Q ss_pred --cCCCCCCCCEEEcCCCcCCC--Cc-CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCC
Q 018662 201 --NLCGLKCIKKISLQSNRLTS--MK-GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNL 271 (352)
Q Consensus 201 --~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~ 271 (352)
.+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.++++ ..+..+++|++|++++|.++++ ..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 46788999999999999876 33 578899999999999999886 3578899999999999999887 357889
Q ss_pred CCCCeEEcCCCCCcchHHHHHHHhccc-cCccEeeccCCCccccccccCCccHHH
Q 018662 272 SRLEDLWLNDNQIESLESIVEAVAGSR-ETLTTIYLENNPQNLQIILLPSDKFSQ 325 (352)
Q Consensus 272 ~~L~~L~l~~n~i~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~ 325 (352)
++|+.|++++|.++... ...+..+ ++|+.|++++|++.|++ +..+|..
T Consensus 223 ~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N~~~~~c---~~~~~~~ 271 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTC---EHQSFLQ 271 (306)
T ss_dssp TTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTCCEECSG---GGHHHHH
T ss_pred ccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCCCeeccc---ChHHHHH
Confidence 99999999999998654 2334556 48999999999999987 4344544
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.5e-24 Score=186.17 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=132.3
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
.+.++++++.++.+|. .+++++++|++++|.++.++. .+..+++|++|++++|.++... ...+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC---HhhcCCccCCCEEeCC
Confidence 3778889999988875 667899999999999998775 4888999999999999887753 3356667888888888
Q ss_pred CCC-CCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccc
Q 018662 105 DNK-LMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181 (352)
Q Consensus 105 ~~~-l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 181 (352)
+|. +..+++ +..+++|++|++++|.+....+ ..+..+++|++|++++|.+...+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~- 146 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------GLFRGLAALQYLYLQDNALQALPD- 146 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------hHhhCCcCCCEEECCCCcccccCH-
Confidence 886 776633 6667777777777766654322 122333444444444444332111
Q ss_pred cCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEc
Q 018662 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDV 257 (352)
Q Consensus 182 ~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l 257 (352)
..+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+.++ ..+..+++|++|++
T Consensus 147 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 147 ------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp ------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ------------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 01222333444444444443332 244455555666665555543 23455556666666
Q ss_pred CCCcCCCc--ccccCCCCCCeEEcCCCCCcc
Q 018662 258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~ 286 (352)
++|+++++ ..+..+++|+.|++++|++..
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 66666555 235556666666666666553
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=202.95 Aligned_cols=237 Identities=19% Similarity=0.252 Sum_probs=150.6
Q ss_pred CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662 70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS 149 (352)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 149 (352)
+|++|++++|.+++. .+..|..+++|++|++++|.+...+++..+++|++|++++|.+.+++. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCC---CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCC---CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 455555555444443 112334444455555555444433334445555555555554444332 1455555555
Q ss_pred CCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcccee---cCC-CCCCCCEEEcCCCcCCCCcC
Q 018662 150 KNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLC-GLKCIKKISLQSNRLTSMKG 223 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~-~~~~L~~L~l~~~~~~~~~~ 223 (352)
+|.+..... ..+++|+.|++++|.+... ..+..+++|+.|++++|.+... .+. .+++|+.|++++|.++..+.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 555544321 2345566666666666533 2456667777777777776654 232 56788888888888877776
Q ss_pred ccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCc
Q 018662 224 FEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301 (352)
Q Consensus 224 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L 301 (352)
...+++|+.|++++|.+++++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|++.. +.+..++..++.|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c--~~~~~~~~~l~~L 264 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRV 264 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH--HHHHHHHTTCHHH
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC--cchHHHHHhCCCC
Confidence 667888889999988888763 467788899999999999887 567788899999999999884 3334556778888
Q ss_pred cEeecc-------CCCcccccc
Q 018662 302 TTIYLE-------NNPQNLQII 316 (352)
Q Consensus 302 ~~L~l~-------~n~~~~~~~ 316 (352)
+.++++ .+++.|.+.
T Consensus 265 ~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 265 QTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHHHHHHHHTSSSSCCCSST
T ss_pred cEEeccccccccCCCcccccCC
Confidence 888886 777766653
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.6e-25 Score=193.67 Aligned_cols=220 Identities=20% Similarity=0.219 Sum_probs=157.3
Q ss_pred CCCcEEeccCCccCc--cccccccccccCCCCcEEEccC-CCCC-CCCC-CccccCCcEEEccCCCcccccCCcccccCc
Q 018662 69 SNLKKLSLRQNLIDD--AAIEPISRWDALAGLEELILRD-NKLM-KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143 (352)
Q Consensus 69 ~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~-~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 143 (352)
.++++|+++++.+.+ .. +..+..+++|++|++++ |.+. .+|. +..+++|++|++++|.+.+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~---~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC--------
T ss_pred ceEEEEECCCCCccCCccc---ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC--------
Confidence 467777777777765 32 23455677777777774 6555 3444 6667777777777776653221
Q ss_pred ceEEccCCcCCCcccccCCCCCcEEEcCCCccC--CcccccCCCCCcEEEccCCcccee---cCCCCC-CCCEEEcCCCc
Q 018662 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLK-CIKKISLQSNR 217 (352)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~-~L~~L~l~~~~ 217 (352)
..+..+++|++|++++|.+. .+..+..+++|++|++++|.+... .+..++ +|+.|++++|.
T Consensus 119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp -------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred -------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 23444555555555555553 234566677777777777776633 455666 89999999998
Q ss_pred CCCC-c-CccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcc-hHHHH
Q 018662 218 LTSM-K-GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES-LESIV 291 (352)
Q Consensus 218 ~~~~-~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~-~~~~~ 291 (352)
+.+. | .+..++ |+.|++++|.+.+. ..+..+++|+.|++++|.+++. +.+..+++|++|++++|.++. +|
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--- 261 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--- 261 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC---
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC---
Confidence 8744 3 456665 99999999998864 3578899999999999999866 667888999999999999983 33
Q ss_pred HHHhccccCccEeeccCCCccccccc
Q 018662 292 EAVAGSRETLTTIYLENNPQNLQIIL 317 (352)
Q Consensus 292 ~~~~~~~~~L~~L~l~~n~~~~~~~~ 317 (352)
..+..+++|+.|++++|++.+.++.
T Consensus 262 -~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 262 -QGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -GGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -hHHhcCcCCCEEECcCCcccccCCC
Confidence 3467789999999999999888743
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4e-27 Score=218.65 Aligned_cols=170 Identities=25% Similarity=0.281 Sum_probs=75.2
Q ss_pred CcceEEccCCcCCC------cccccCCCCCcEEEcCCCccCCc------cc-ccCCCCCcEEEccCCcccee-------c
Q 018662 142 TLKELYVSKNEVPK------MEEIEHFHDLQILEFGSNRLRVM------EN-LQNLTNLQELWLGRNRIKVV-------N 201 (352)
Q Consensus 142 ~L~~L~l~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~~------~~-~~~~~~L~~L~l~~~~l~~~-------~ 201 (352)
+|++|++++|.+.. ...+..+++|++|++++|.+... +. ...+++|+.|++++|.+... .
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 45555555554443 12233445555555555544311 11 12344555555555544442 2
Q ss_pred CCCCCCCCEEEcCCCcCCCCc--Cc-----cccccCcEEECCCCCCCCCC------CCCCCCCCcEEEcCCCcCCCc--c
Q 018662 202 LCGLKCIKKISLQSNRLTSMK--GF-----EECIALEELYLSHNGISKME------GLSTLVNLHVLDVSSNKLTLV--D 266 (352)
Q Consensus 202 ~~~~~~L~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~--~ 266 (352)
+..+++|++|++++|.+.... .+ ...++|+.|++++|.+++.. .+..+++|++|++++|.+++. .
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 223455555555555443221 01 11235555555555544321 123345555666655555433 1
Q ss_pred c----cc-CCCCCCeEEcCCCCCcchH-HHHHHHhccccCccEeeccCCCc
Q 018662 267 D----IQ-NLSRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNPQ 311 (352)
Q Consensus 267 ~----~~-~~~~L~~L~l~~n~i~~~~-~~~~~~~~~~~~L~~L~l~~n~~ 311 (352)
. +. ..++|++|++++|.+++.. ..+...+..+++|++|++++|++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 1 11 1345666666666555311 01122233455666666666643
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=187.93 Aligned_cols=247 Identities=19% Similarity=0.258 Sum_probs=182.5
Q ss_pred cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
++++++|+++++.+++++. +..+++|++|++++|.++.++. .+.++++|++|++++|.++.. ....+..+++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL---SSSWFKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC---CHHHHTTCTTCS
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC---CHhHhCCCccCC
Confidence 4689999999999999876 5567999999999999998754 589999999999999999875 233477899999
Q ss_pred EEEccCCCCCCCCC---CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCC
Q 018662 100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGS 172 (352)
Q Consensus 100 ~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~ 172 (352)
+|++++|.+..++. +..+++|++|++++|. +..+.+ ....+++|++|++++|.+... ..+..+++|++|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999999998876 7789999999999994 665543 344578888898888877663 4567777777777777
Q ss_pred CccCCccc--ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-----CC-
Q 018662 173 NRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-----ME- 244 (352)
Q Consensus 173 ~~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~- 244 (352)
|.+...+. +..+++|+.|++++|.+........ +.....+.++.++++++.+.+ ++
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL----------------STGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred CccccchhhhhhhcccccEEECCCCcccccccccc----------------ccccccchhhccccccccccCcchhhhHH
Confidence 77654332 2345666666666665554321111 111234556666666665554 22
Q ss_pred CCCCCCCCcEEEcCCCcCCCcc--cccCCCCCCeEEcCCCCCcchH
Q 018662 245 GLSTLVNLHVLDVSSNKLTLVD--DIQNLSRLEDLWLNDNQIESLE 288 (352)
Q Consensus 245 ~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~i~~~~ 288 (352)
.+..+++|++|++++|+++.++ .+..+++|++|++++|+++...
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3566778888999988888773 3578899999999999988643
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.7e-22 Score=175.52 Aligned_cols=214 Identities=22% Similarity=0.319 Sum_probs=151.8
Q ss_pred cEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662 72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS 149 (352)
Q Consensus 72 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 149 (352)
++++.+++.++... .. ..++|++|++++|.+..++. +..+++|++|++++|.+..+.+
T Consensus 14 ~~~~c~~~~l~~ip----~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------- 73 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP----VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-------------- 73 (285)
T ss_dssp CEEECCSSCCSSCC----TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------------
T ss_pred eEEEcCcCCcccCC----cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------------
Confidence 45555555555431 11 13456666666666655443 5555566666666555554322
Q ss_pred CCcCCCcccccCCCCCcEEEcCCCc-cCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc-
Q 018662 150 KNEVPKMEEIEHFHDLQILEFGSNR-LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK- 222 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~- 222 (352)
..+..+++|++|++++|. +.. +..+..+++|++|++++|.+... .+..+++|++|++++|.++..+
T Consensus 74 -------~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 74 -------AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp -------TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 234445555555555554 432 23455666777777777666555 4667788888899888888775
Q ss_pred -CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhcc
Q 018662 223 -GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297 (352)
Q Consensus 223 -~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 297 (352)
.+..+++|+.|++++|.+++++. +..+++|++|++++|.++++ ..+..+++|+.|++++|.++.++ ...+..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~ 223 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAP 223 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHccc
Confidence 37789999999999999998753 78899999999999999887 67888999999999999999765 345678
Q ss_pred ccCccEeeccCCCccccc
Q 018662 298 RETLTTIYLENNPQNLQI 315 (352)
Q Consensus 298 ~~~L~~L~l~~n~~~~~~ 315 (352)
+++|+.|++++|++.|++
T Consensus 224 l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CTTCCEEECCSSCEECSG
T ss_pred CcccCEEeccCCCccCCC
Confidence 899999999999999988
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.2e-24 Score=189.89 Aligned_cols=238 Identities=21% Similarity=0.188 Sum_probs=128.9
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCC--cchhhhh-------cCCCCcEEeccCCccCcccccccccccc
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT--SLDSRIS-------HLSNLKKLSLRQNLIDDAAIEPISRWDA 94 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (352)
++++.++++++.+ .+|. .++..+++|++++|.+. .++..+. ++++|++|++++|.+++..+..+. +..
T Consensus 43 ~~L~~l~l~~n~l-~~p~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLG-QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL-EAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCH-HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-SCC
T ss_pred CCceeEeeccccc-ccHH-HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-Hhc
Confidence 3455555555555 2221 22233555555555543 2333222 345555555555555443221110 134
Q ss_pred CCCCcEEEccCCCCCCCCC-Cccc-----cCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEE
Q 018662 95 LAGLEELILRDNKLMKIPD-VSIF-----KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQIL 168 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~-~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 168 (352)
+++|++|++++|.+..+|. +..+ ++|++|++++|.+....+ ..++.+++|++|
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L 178 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC---------------------EQVRVFPALSTL 178 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT---------------------TTCCCCSSCCEE
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH---------------------HHhccCCCCCEE
Confidence 4555555555555544433 2222 444444444444444331 234455555555
Q ss_pred EcCCCccCC----cccc--cCCCCCcEEEccCCcccee------cCCCCCCCCEEEcCCCcCCCCc---CccccccCcEE
Q 018662 169 EFGSNRLRV----MENL--QNLTNLQELWLGRNRIKVV------NLCGLKCIKKISLQSNRLTSMK---GFEECIALEEL 233 (352)
Q Consensus 169 ~l~~~~l~~----~~~~--~~~~~L~~L~l~~~~l~~~------~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L 233 (352)
++++|++.. +..+ ..+++|++|++++|.+... .+..+++|+.|++++|.+.+.+ .+..+++|+.|
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 555555321 1222 5556666666666665532 2235567777777777776642 34456778888
Q ss_pred ECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcc
Q 018662 234 YLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 234 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~ 286 (352)
++++|.++.++.... ++|++|++++|++++++.+..+++|++|++++|++++
T Consensus 259 ~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 259 NLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred ECCCCccChhhhhcc-CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 888888777654322 6788888888888777557777888888888888774
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3e-25 Score=206.01 Aligned_cols=325 Identities=20% Similarity=0.191 Sum_probs=218.4
Q ss_pred ccccccccccCceeecCCCCCcCC-----C-CCCCCCcccEEEcCCCCCCcc-hhh-hhcCC----CCcEEeccCCccCc
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTSL-DSR-ISHLS----NLKKLSLRQNLIDD 83 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~l~~l-~~~-~~~l~----~L~~L~l~~~~~~~ 83 (352)
..+++...+++++|+++++.+++. + .+..+++|++|++++|.+... +.. ...++ +|++|++++|.++.
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 344456667888888888887743 1 133457888888888887742 222 33455 68888888888775
Q ss_pred cccc-cccccccCCCCcEEEccCCCCCCC--CC-----CccccCCcEEEccCCCccccc-----CCcccccCcceEEccC
Q 018662 84 AAIE-PISRWDALAGLEELILRDNKLMKI--PD-----VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSK 150 (352)
Q Consensus 84 ~~~~-~~~~~~~l~~L~~L~l~~~~l~~l--~~-----~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~ 150 (352)
.... ....+..+++|++|++++|.+... .. ....++|++|++++|.+.... .....+++|++|++++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 3211 133456778888888888877631 11 122457888888888776532 2223367889999988
Q ss_pred CcCCCc--cccc-----CCCCCcEEEcCCCccCC------cccccCCCCCcEEEccCCcccee--------cCCCCCCCC
Q 018662 151 NEVPKM--EEIE-----HFHDLQILEFGSNRLRV------MENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIK 209 (352)
Q Consensus 151 ~~~~~~--~~~~-----~~~~L~~L~l~~~~l~~------~~~~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~ 209 (352)
|.+... ..+. ..++|++|++++|.+.. ...+..+++|++|++++|.+... ....+++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 886652 2221 35689999999988764 33456788999999999987654 223578999
Q ss_pred EEEcCCCcCCCC-----c-CccccccCcEEECCCCCCCCCC------C-CCCCCCCcEEEcCCCcCCCc------ccccC
Q 018662 210 KISLQSNRLTSM-----K-GFEECIALEELYLSHNGISKME------G-LSTLVNLHVLDVSSNKLTLV------DDIQN 270 (352)
Q Consensus 210 ~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~n~l~~~~------~-~~~~~~L~~L~l~~n~l~~~------~~~~~ 270 (352)
+|++++|.++.. + .+..+++|++|++++|.+.+.. . ....++|++|++++|.+++. ..+..
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 999999988763 2 3556889999999999886421 1 12346899999999998764 34566
Q ss_pred CCCCCeEEcCCCCCcchH-HHHHHHhc-cccCccEeeccCCCccccccccCCccHHHHHHHHHHhhhhccCceeceeeee
Q 018662 271 LSRLEDLWLNDNQIESLE-SIVEAVAG-SRETLTTIYLENNPQNLQIILLPSDKFSQIYSRLILMYFFRSHSVLGFSFCQ 348 (352)
Q Consensus 271 ~~~L~~L~l~~n~i~~~~-~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (352)
+++|++|++++|.+++.. ......+. .+++|++|++++|.++... ...+...+ .-++++.++++++|.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l---~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-------CSSLAATL---LANHSLRELDLSNNC 409 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH-------HHHHHHHH---HHCCCCCEEECCSSS
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh-------HHHHHHHH---HhCCCccEEECCCCC
Confidence 789999999999988643 12222222 3679999999999654321 11222222 237788888888887
Q ss_pred cc
Q 018662 349 DY 350 (352)
Q Consensus 349 ~~ 350 (352)
..
T Consensus 410 i~ 411 (461)
T 1z7x_W 410 LG 411 (461)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-24 Score=187.87 Aligned_cols=233 Identities=21% Similarity=0.255 Sum_probs=191.9
Q ss_pred CcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEc
Q 018662 71 LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148 (352)
Q Consensus 71 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 148 (352)
++..+++.+.+... ....+..+++|++|++++|.+..+++ +..+++|++|++++|.+.+..+ ...+++|++|++
T Consensus 12 l~i~~ls~~~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQA---LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHH---HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred eeEeeccccchhhh---HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 44455666555442 11223457799999999999998874 8889999999999999987665 555889999999
Q ss_pred cCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--C
Q 018662 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--G 223 (352)
Q Consensus 149 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~ 223 (352)
++|.+..+. ..++|++|++++|.+..... ..+++|+.|++++|.+... .+..+++|+.|++++|.+...+ .
T Consensus 88 s~n~l~~l~---~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 88 NNNYVQELL---VGPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp CSSEEEEEE---ECTTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cCCcccccc---CCCCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 999877543 45899999999999875432 3478899999999998876 5667899999999999998763 3
Q ss_pred c-cccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCc
Q 018662 224 F-EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301 (352)
Q Consensus 224 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L 301 (352)
+ ..+++|+.|++++|.++.++....+++|++|++++|+++++ +.+..+++|+.|++++|.++.++. .+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh----HhhcCCCC
Confidence 3 46899999999999999988777899999999999999988 568889999999999999998764 35778999
Q ss_pred cEeeccCCCccccc
Q 018662 302 TTIYLENNPQNLQI 315 (352)
Q Consensus 302 ~~L~l~~n~~~~~~ 315 (352)
+.|++++|++.|..
T Consensus 240 ~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 240 EHFDLRGNGFHCGT 253 (317)
T ss_dssp CEEECTTCCCBHHH
T ss_pred CEEEccCCCccCcC
Confidence 99999999998654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.7e-24 Score=190.51 Aligned_cols=239 Identities=18% Similarity=0.183 Sum_probs=177.7
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccc-------cCCCCcEEEccCCCCC-CCCC-C--
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD-------ALAGLEELILRDNKLM-KIPD-V-- 114 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~-~l~~-~-- 114 (352)
++|++|++++|.+ .+|..+... |++|++++|.+.... ....+. .+++|++|++++|.+. .+|. +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAAR--IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEE--CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCC--cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 5688888888888 777766554 888888888775431 111111 4778888888888877 3554 3
Q ss_pred ccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEc
Q 018662 115 SIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWL 192 (352)
Q Consensus 115 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l 192 (352)
..+++|++|++++|.+.+.+.....+. ...+++|++|++++|.+... ..+..+++|+.|++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~-----------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQ-----------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHH-----------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHH-----------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 677888888888887776532211110 00136677777777777533 46889999999999
Q ss_pred cCCcccee-------cCCCCCCCCEEEcCCCcCCCCcC-----ccccccCcEEECCCCCCCCC---CCCCCCCCCcEEEc
Q 018662 193 GRNRIKVV-------NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISKM---EGLSTLVNLHVLDV 257 (352)
Q Consensus 193 ~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l 257 (352)
++|.+... .+..+++|++|++++|.++..+. +..+++|+.|++++|.+.+. +.+..+++|++|++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 99986542 33789999999999999986532 34678999999999999884 34566799999999
Q ss_pred CCCcCCCcc-cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccc
Q 018662 258 SSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 258 ~~n~l~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
++|+++.++ .+. ++|++|++++|+|+++|. +..+++|++|++++|++++
T Consensus 261 s~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 261 SFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-----PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-----TTTSCEEEEEECTTCTTTC
T ss_pred CCCccChhhhhcc--CCceEEECCCCCCCCChh-----HhhCCCCCEEeccCCCCCC
Confidence 999999873 333 899999999999998753 5678999999999998765
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.3e-23 Score=181.93 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=100.4
Q ss_pred hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcc
Q 018662 65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144 (352)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 144 (352)
+..+++|++|+++++.++.. +.+..+++|++|++++|.+..++.+..+++|++|++++|.+..+. ....+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 34566677777777666542 235556667777777766666655666666666666666665543 223345556
Q ss_pred eEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcC
Q 018662 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG 223 (352)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~ 223 (352)
+|++++|.+..+..+..+++|++|++++|.+...+.+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.
T Consensus 111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence 66665555555444555555555555555554444444444455555444444433 23344444444444444444433
Q ss_pred ccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662 224 FEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 224 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 263 (352)
+..+++|++|++++|.+.+++.+..+++|+.|++++|+++
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 3444444444444444444333344444444444444443
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=3.4e-22 Score=184.29 Aligned_cols=215 Identities=24% Similarity=0.353 Sum_probs=169.8
Q ss_pred cccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
+++++.|++++++++.++. +..+++|++|++++|.+..++. .|.++++|++|++++|.++.. ....|..+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI---PNGAFVYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC---CTTTSCSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee---CHhHhhccccCc
Confidence 4679999999999998864 4557999999999999998774 589999999999999999875 233577899999
Q ss_pred EEEccCCCCCCCCC--CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCcc
Q 018662 100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 100 ~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l 175 (352)
+|++++|.+..++. +..+++|++|++++|. +..+.. .+..+++|++|++++|.+..++.+..+++|+.|++++|.+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 99999999998876 8889999999999854 444443 3444788888888888888777777888888888888877
Q ss_pred CC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662 176 RV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (352)
Q Consensus 176 ~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l 240 (352)
.. +..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 53 34567777888888888777766 4566777777777777777664 355677777777777654
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1e-22 Score=178.69 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=158.8
Q ss_pred cEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCC
Q 018662 72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151 (352)
Q Consensus 72 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 151 (352)
..+.+..+.+.+. .....+++|++|++++|.+..++.+..+++|++|++++|.+..+.+ ...+++|++|++++|
T Consensus 22 ~~~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 22 IKIAAGKSNVTDT-----VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTTCSSTTSE-----ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCce-----ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC
Confidence 3345555555542 2344578999999999999988888889999999999999888766 556788999999998
Q ss_pred cCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccccC
Q 018662 152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIAL 230 (352)
Q Consensus 152 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L 230 (352)
.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+.+..+++|
T Consensus 96 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 175 (308)
T 1h6u_A 96 PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175 (308)
T ss_dssp CCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred cCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence 8888777888888888888888887766677778888888877777665 456667777777777777766556667777
Q ss_pred cEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcchH
Q 018662 231 EELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288 (352)
Q Consensus 231 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~~~ 288 (352)
+.|++++|.+++++.+..+++|++|++++|+++++..+..+++|+.|++++|+++..+
T Consensus 176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred CEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence 7777777777776666667777777777777776655666777777777777776543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=3.5e-22 Score=184.86 Aligned_cols=217 Identities=23% Similarity=0.329 Sum_probs=170.8
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.+++++.|++++++++++++ +..+++|++|++++|.++.++. .|.++++|++|++++|.++.. ....|..+++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L 149 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI---PSGAFEYLSKL 149 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC---CTTTSSSCTTC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc---ChhhhcccCCC
Confidence 34689999999999998854 4557999999999999998764 589999999999999999875 33456789999
Q ss_pred cEEEccCCCCCCCCC--CccccCCcEEEccCCC-cccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR 174 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (352)
++|++++|.+..++. +..+++|++|++++|. +..+.. .+..+++|++|++++|.+..++.+..+++|+.|++++|.
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 999999999998876 8889999999999854 444443 234477888888888888887777788888888888887
Q ss_pred cCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCC
Q 018662 175 LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGIS 241 (352)
Q Consensus 175 l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~ 241 (352)
+.. +..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+.
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 753 34577777888888888777666 4566777777777777777664 3556777777777777543
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.8e-22 Score=178.77 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=157.2
Q ss_pred CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEE
Q 018662 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD 124 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~ 124 (352)
+++++|++++|.+..+|..+.++++|++|++++|.++. .+..+..+++|++|++++|.+..+|. +..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~----lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME----LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC----CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc----hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 67888888888888888777778888888888888774 23345677888888888888887775 77788888888
Q ss_pred ccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCc-ccccCCCCCcEEEccCCcccee--c
Q 018662 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV--N 201 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~~~l~~~--~ 201 (352)
+++|.+.+..+... ....+ ...+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+... .
T Consensus 157 L~~n~~~~~~p~~~-----~~~~~-------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 157 IRACPELTELPEPL-----ASTDA-------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp EEEETTCCCCCSCS-----EEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CCCCCCccccChhH-----hhccc-------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 88865544322111 11000 11234566666666666666432 4466667777777777766655 4
Q ss_pred CCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCC
Q 018662 202 LCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE 275 (352)
Q Consensus 202 ~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~ 275 (352)
+..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++.+. +.+..+++|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 56677788888887766544 3 46778888888888876654 43 467788899999998887554 6788889999
Q ss_pred eEEcCCCCCcchH
Q 018662 276 DLWLNDNQIESLE 288 (352)
Q Consensus 276 ~L~l~~n~i~~~~ 288 (352)
.+++..+.+..++
T Consensus 305 ~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 305 IILVPPHLQAQLD 317 (328)
T ss_dssp EEECCGGGSCC--
T ss_pred EEeCCHHHHHHHh
Confidence 9999888776554
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.4e-22 Score=176.95 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=145.1
Q ss_pred ccCceeecCCCCCcCCCC-CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 24 LSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
..++.|+++++.++.++. +..+++|++|++++|.++.+|..+.++++|++|++++|.++. .+..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA----LPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC----CCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc----CcHHHhcCcCCCEEE
Confidence 679999999999999876 445799999999999999999999999999999999999985 334677899999999
Q ss_pred ccCCCC-CCCCC-Cc---------cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEc
Q 018662 103 LRDNKL-MKIPD-VS---------IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEF 170 (352)
Q Consensus 103 l~~~~l-~~l~~-~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l 170 (352)
+++|.+ ..+|. +. .+++|++|++++|.+..++.....+++|++|++++|.+..+ ..+..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 999754 45665 33 37777777777777766554444566666666666666552 33555555555555
Q ss_pred CCCccC--CcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCC-c-CccccccCcEEECCCCCCCC-CC-
Q 018662 171 GSNRLR--VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-K-GFEECIALEELYLSHNGISK-ME- 244 (352)
Q Consensus 171 ~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~l~~-~~- 244 (352)
++|.+. .+..+ ..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+ +|
T Consensus 237 s~n~~~~~~p~~~---------------------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 237 RGCTALRNYPPIF---------------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCTTCCBCCCCT---------------------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred cCCcchhhhHHHh---------------------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 555442 22233 4445555555555443332 2 34556666666666654433 32
Q ss_pred CCCCCCCCcEEEcCCCcCC
Q 018662 245 GLSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 245 ~~~~~~~L~~L~l~~n~l~ 263 (352)
.+..+++++.+++..+.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 3555566666666554443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.6e-22 Score=188.42 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=183.2
Q ss_pred cCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662 94 ALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG 171 (352)
Q Consensus 94 ~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 171 (352)
.+++|++|++++|.+..+++ +..+++|++|++++|.+.+..+ ...+++|++|++++|.+..++ ..++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 35689999999999998764 8899999999999999987666 556899999999999887643 34899999999
Q ss_pred CCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--Ccc-ccccCcEEECCCCCCCCCCC
Q 018662 172 SNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFE-ECIALEELYLSHNGISKMEG 245 (352)
Q Consensus 172 ~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~~n~l~~~~~ 245 (352)
+|.+..... ..+++|+.|++++|.+... .+..+++|+.|++++|.+++.+ .+. .+++|+.|++++|.+++++.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 999875533 3568999999999998876 5677899999999999998763 343 68999999999999999888
Q ss_pred CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 246 LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 246 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
...+++|+.|++++|.++++ +.+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.|..
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBCHHH
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCcCcc
Confidence 88899999999999999988 668889999999999999998764 2567899999999999998554
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.5e-21 Score=168.35 Aligned_cols=198 Identities=22% Similarity=0.249 Sum_probs=137.0
Q ss_pred ccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEE
Q 018662 91 RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169 (352)
Q Consensus 91 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 169 (352)
.+..++++++++++++.++.+|. ...++++.|++++|.+..+.+ .+..+++|++|++++|.+..+...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------- 74 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--------- 74 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS---------
T ss_pred cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC---------
Confidence 45667788888888888887775 113577788888777766542 2233455555555555554433334
Q ss_pred cCCCccCCcccccCCCCCcEEEccCCcccee--cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC
Q 018662 170 FGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG 245 (352)
Q Consensus 170 l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~ 245 (352)
.+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|+++.++.
T Consensus 75 -------------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 75 -------------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp -------------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred -------------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 444555555555544443 3455677777777777777764 36778888888888888887653
Q ss_pred --CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 246 --LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 246 --~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++.+|.. ...+++|+.|++++|||.|++
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCCSG
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeCCCCccCcC
Confidence 56778888888888888877 3467788899999999998877643 234578899999999998887
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2e-20 Score=161.08 Aligned_cols=197 Identities=23% Similarity=0.359 Sum_probs=138.8
Q ss_pred CCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662 96 AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR 174 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (352)
...+.++++++.++.+|. ...+++++|++++|.+..+++ .+..+++|++|++++|.+..+..
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~---------------- 78 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA---------------- 78 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT----------------
T ss_pred CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh----------------
Confidence 356778888877777775 112567777777777766543 22334555555555555444211
Q ss_pred cCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CC
Q 018662 175 LRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LS 247 (352)
Q Consensus 175 l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~ 247 (352)
..+..+++|++|++++|.+... .+..+++|++|++++|.++..+ .+..+++|++|++++|.+..++. +.
T Consensus 79 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 79 ----GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp ----TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 1134455555555555555444 3455677777777777777764 36778899999999998888764 67
Q ss_pred CCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
.+++|++|++++|.++++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|||.|++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEecCCCeeCCCc
Confidence 889999999999999887 347788999999999999997763 346778999999999999999884
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=7.6e-21 Score=164.27 Aligned_cols=216 Identities=22% Similarity=0.307 Sum_probs=149.0
Q ss_pred ceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 27 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
..+++.+..++.+|. .+++++++|++++|.++.++. .+.++++|++|++++|.++... ...+..+++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC---HHHccCCcCCCEEECCC
Confidence 456778888888876 567889999999999998876 5888999999999999888752 23567788999999999
Q ss_pred CCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC---cccccCCCCCcEEEcCCCccCCc-
Q 018662 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRLRVM- 178 (352)
Q Consensus 106 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~- 178 (352)
|.+..++. +..+++|++|++++|.+...... ...+++|++|++++|.+.. +..+..+++|++|++++|++..+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 98887663 77888899999988888776542 3335666666666666554 23344455555555555544321
Q ss_pred -ccccCCCCCcEEEccCCccceecCCCCCCCC-EEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCCC--CCCCCCCc
Q 018662 179 -ENLQNLTNLQELWLGRNRIKVVNLCGLKCIK-KISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG--LSTLVNLH 253 (352)
Q Consensus 179 -~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~ 253 (352)
..+..++.+ +.+. .+++++|.+...+ ......+|+.|++++|.+++++. +..+++|+
T Consensus 166 ~~~~~~l~~L------------------~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 166 CTDLRVLHQM------------------PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp GGGGHHHHTC------------------TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred HHHhhhhhhc------------------cccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccccc
Confidence 112222222 2222 6677777666653 23334578888888888887653 56788899
Q ss_pred EEEcCCCcCCC
Q 018662 254 VLDVSSNKLTL 264 (352)
Q Consensus 254 ~L~l~~n~l~~ 264 (352)
+|++++|++..
T Consensus 228 ~L~l~~N~~~c 238 (276)
T 2z62_A 228 KIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCBCC
T ss_pred EEEccCCcccc
Confidence 99999888753
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=6e-21 Score=164.94 Aligned_cols=197 Identities=25% Similarity=0.331 Sum_probs=127.8
Q ss_pred CCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCC
Q 018662 96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (352)
++|++|++++|.+..++. +..+++|++|++++|.+..+.+ ..+..+++|++|++++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED---------------------GAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT---------------------TTTTTCTTCCEEECTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH---------------------HHccCCcCCCEEECCCC
Confidence 346666666666665443 5555666666666665554433 12344444555555554
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--c-CccccccCcEEECCCCCCCCCC-
Q 018662 174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--K-GFEECIALEELYLSHNGISKME- 244 (352)
Q Consensus 174 ~l~~~--~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~-~~~~~~~L~~L~l~~n~l~~~~- 244 (352)
.+... ..+..+++|+.|++++|.+... .+..+++|++|++++|.+... | .+..+++|+.|++++|.+++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 44321 2345555666666665555444 355667777777777777653 3 4677788888888888887653
Q ss_pred -CCCCCCCCc----EEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 245 -GLSTLVNLH----VLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 245 -~~~~~~~L~----~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
.+..+.+|+ +|++++|.++++ .......+|++|++++|.++.++ ...+..+++|+.|++++|++.|++.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC---TTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC---HhHhcccccccEEEccCCcccccCC
Confidence 233333444 899999998877 33444558999999999999776 3456778999999999999999883
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.9e-20 Score=160.09 Aligned_cols=191 Identities=27% Similarity=0.385 Sum_probs=135.9
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
...+.++++++.++.+|. .+++++++|++++|.+..++. .|.++++|++|++++|.++.. ....|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i---~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC---CTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee---ChhhhcCCCCCCEEE
Confidence 457899999999999875 567899999999999998876 588999999999999998875 233456789999999
Q ss_pred ccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCC
Q 018662 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV 177 (352)
Q Consensus 103 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~ 177 (352)
+++|.+..++. +..+++|++|++++|.+..+++. +..+++|++|++++|.+..+. .+..+++|++|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999998875 67788999999999988876543 334677777777777766632 25566666666666666543
Q ss_pred cc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcC
Q 018662 178 ME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL 218 (352)
Q Consensus 178 ~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~ 218 (352)
++ .+..+++|+.|++++|.+... .+..+++|+.|++++|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 32 244455555555555544433 233344444444444433
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=8.9e-21 Score=163.48 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=115.1
Q ss_pred CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662 70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS 149 (352)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 149 (352)
.+..+++.++.+.+. .....+++|+.|++.++.+..++.+..+++|++|++++|.+.... ....+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE-----ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc-----cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 444555555555442 233456777777777777776666666777777777776665432 12223444444444
Q ss_pred CCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCcC--c
Q 018662 150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--F 224 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~--~ 224 (352)
+|.+..... ..+..+++|++|++++|.+... .+..+++|++|++++|.++..+. +
T Consensus 94 ~n~l~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 94 GNQLQSLPN--------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp TSCCCCCCT--------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCccCccCh--------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 444333111 1134444444444444444433 23445555556666555555532 4
Q ss_pred cccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccC
Q 018662 225 EECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300 (352)
Q Consensus 225 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~ 300 (352)
..+++|+.|++++|.+++++. +..+++|++|++++|+++++ ..+..+++|+.|++++|++.. .|++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~ 223 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPG 223 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----------CTTT
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----------cCcH
Confidence 556666666666666665543 45566666666666666655 235566666666666666552 2455
Q ss_pred ccEeeccCCCccccc
Q 018662 301 LTTIYLENNPQNLQI 315 (352)
Q Consensus 301 L~~L~l~~n~~~~~~ 315 (352)
|+.+++.+|.+.|.+
T Consensus 224 l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 224 IRYLSEWINKHSGVV 238 (272)
T ss_dssp THHHHHHHHHTGGGB
T ss_pred HHHHHHHHHhCCCcc
Confidence 666666666665555
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=3.8e-20 Score=159.54 Aligned_cols=174 Identities=27% Similarity=0.445 Sum_probs=148.1
Q ss_pred ccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCC
Q 018662 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN 216 (352)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~ 216 (352)
+.+|+.|++.++.+..+..+..+++|++|++++|.+..++.+..+++|++|++++|.+... .+..+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 5566777777776666666777888888888888887777788889999999999988876 3678999999999999
Q ss_pred cCCCCcC--ccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHH
Q 018662 217 RLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESI 290 (352)
Q Consensus 217 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~ 290 (352)
.++..+. +..+++|++|++++|.+++++. +..+++|++|++++|+++++ ..+..+++|+.|++++|.++.++.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD- 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-
Confidence 9998853 7889999999999999998764 67899999999999999988 347889999999999999997663
Q ss_pred HHHHhccccCccEeeccCCCcccccc
Q 018662 291 VEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
..+..+++|+.|++++|++.|.+.
T Consensus 199 --~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 199 --GVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp --TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred --HHHhCCcCCCEEEccCCCccccCc
Confidence 456788999999999999999884
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=8e-20 Score=158.82 Aligned_cols=149 Identities=26% Similarity=0.307 Sum_probs=103.6
Q ss_pred cccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
...++++.++++++.++.+|. .+++++++|++++|.+..++ ..+.++++|++|++++|.++... ....+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-----VDGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-----CCSCCTTCC
T ss_pred cccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-----CCCCCCcCC
Confidence 445678999999999998875 55688999999999998765 45888999999999999887642 225678888
Q ss_pred EEEccCCCCCCCCC-CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCcc
Q 018662 100 ELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 100 ~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l 175 (352)
+|++++|.+..+|. +..+++|++|++++|.+..+++ .+..+++|++|++++|.+..+. .+..+++|+.|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888776 6677888888888887776653 2333455555555555554421 133344444444444443
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.2e-21 Score=187.31 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=128.8
Q ss_pred CcccEEEcCCCCCC-----cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCC----CC-CCCc
Q 018662 46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLM----KI-PDVS 115 (352)
Q Consensus 46 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l-~~~~ 115 (352)
++|++|++++|.++ .++..+.++++|++|++++|.+.+ ....+..+++|++|++...... .. ..+.
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH----HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44555555555443 222233445555555555544443 1122334445555554432111 01 1134
Q ss_pred cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc---ccccCCCCCcEEEcCCCccC--Ccc-cccCCCCCcE
Q 018662 116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR--VME-NLQNLTNLQE 189 (352)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~l~--~~~-~~~~~~~L~~ 189 (352)
.+++|+.++++++....++.....+++|++|++++|.+... ..+..+++|++|++.. .+. .+. ....+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCE
Confidence 44555555555544333444444466777777777764431 2245666777776662 221 111 1245666777
Q ss_pred EEccC-----------Ccccee----cCCCCCCCCEEEcCCCcCCCCc--Ccc-ccccCcEEECC----CCCCCCCC---
Q 018662 190 LWLGR-----------NRIKVV----NLCGLKCIKKISLQSNRLTSMK--GFE-ECIALEELYLS----HNGISKME--- 244 (352)
Q Consensus 190 L~l~~-----------~~l~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~l~----~n~l~~~~--- 244 (352)
|++++ +.+... ....+++|++|+++.+.++... .+. .+++|+.|+++ .+.+++.+
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 77762 333322 1233566777776555554331 222 26667777774 44454431
Q ss_pred ----CCCCCCCCcEEEcCCCc--CCCc--cc-ccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCc
Q 018662 245 ----GLSTLVNLHVLDVSSNK--LTLV--DD-IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQ 311 (352)
Q Consensus 245 ----~~~~~~~L~~L~l~~n~--l~~~--~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~ 311 (352)
.+..+++|++|++++|. +++. .. ...+++|+.|++++|.+++ ..+......|++|++|++++|++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD--EGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH--HHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH--HHHHHHHhcCcccCeeeccCCCC
Confidence 02345667777765433 3332 11 2335667777777777664 23344456667777777777754
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5.1e-22 Score=189.94 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=212.6
Q ss_pred cccccccCceeecCCCCCcCCCC------CCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCcccccccccc
Q 018662 19 AVEIDLSNTVLDLTSFQLHDLDS------VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW 92 (352)
Q Consensus 19 ~~~~~~~l~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 92 (352)
+....++|++|+++++.++++.. ...+++|++|++++|.+..++..+..+++|++|+++..............+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 44455778888888877764432 123689999999999999999889999999999998643221112233456
Q ss_pred ccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCccccc--CCcccccCcceEEccCCcCCC--cc-cccCCCCCc
Q 018662 93 DALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVPK--ME-EIEHFHDLQ 166 (352)
Q Consensus 93 ~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~ 166 (352)
..+++|+.|+++++....++. +..+++|++|++++|.+.... .....+++|++|++.+ .+.. +. ....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence 778999999999876666776 677899999999999865432 2235588999999983 3332 22 245688999
Q ss_pred EEEcCC-----------CccCC--ccc-ccCCCCCcEEEccCCcccee---cCC-CCCCCCEEEcC----CCcCCCCc--
Q 018662 167 ILEFGS-----------NRLRV--MEN-LQNLTNLQELWLGRNRIKVV---NLC-GLKCIKKISLQ----SNRLTSMK-- 222 (352)
Q Consensus 167 ~L~l~~-----------~~l~~--~~~-~~~~~~L~~L~l~~~~l~~~---~~~-~~~~L~~L~l~----~~~~~~~~-- 222 (352)
+|++.+ +.+.. +.. ...+++|+.|++..+.+... .+. .+++|+.|+++ .+.+++.|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 999993 33431 122 35689999999988877765 333 38899999996 55666542
Q ss_pred -----CccccccCcEEECCCCC--CCC--CCCC-CCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEEcCCCCCcchHH
Q 018662 223 -----GFEECIALEELYLSHNG--ISK--MEGL-STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLES 289 (352)
Q Consensus 223 -----~~~~~~~L~~L~l~~n~--l~~--~~~~-~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~ 289 (352)
.+..+++|+.|++++|. +++ +..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+++ .
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~ 503 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE--R 503 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH--H
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH--H
Confidence 14568999999997643 443 1122 3468899999999999764 445788999999999999875 3
Q ss_pred HHHHHhccccCccEeeccCCCcccc
Q 018662 290 IVEAVAGSRETLTTIYLENNPQNLQ 314 (352)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~~~~~ 314 (352)
.+......+++|++|++++|+++..
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCccCeeECcCCcCCHH
Confidence 3445556789999999999986554
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.9e-22 Score=181.61 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCCCEEEcCCCcCCC------Cc-CccccccCcEEECCCCCCCC-----C-CCCCCCCCCcEEEcCCCcCCCc------
Q 018662 205 LKCIKKISLQSNRLTS------MK-GFEECIALEELYLSHNGISK-----M-EGLSTLVNLHVLDVSSNKLTLV------ 265 (352)
Q Consensus 205 ~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~n~l~~-----~-~~~~~~~~L~~L~l~~n~l~~~------ 265 (352)
+++|++|++++|.+.. .+ .+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 3444444444444441 12 34455566666666665531 2 1244555666666666666543
Q ss_pred ccc--cCCCCCCeEEcCCCCCcch--HHHHHHHhccccCccEeeccCCCccccc
Q 018662 266 DDI--QNLSRLEDLWLNDNQIESL--ESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 266 ~~~--~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
..+ ..+++|+.|++++|.++.. ......+..++++|++|++++|++++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 222 2256666666666666641 0122222244566666666666555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=9.2e-20 Score=154.04 Aligned_cols=197 Identities=17% Similarity=0.245 Sum_probs=134.0
Q ss_pred CcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCc-cCccccccccccccCCCCcEEEccC-CCCCCCC
Q 018662 36 LHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLEELILRD-NKLMKIP 112 (352)
Q Consensus 36 l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~ 112 (352)
++.+|. +++++++|++++|+++.++. .|.++++|++|++++|. ++.. ....|..+++|++|++++ |.+..++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i---~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL---ESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE---CTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee---CHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 777777 77899999999999998877 58899999999999996 7765 233567789999999998 8888877
Q ss_pred C--CccccCCcEEEccCCCcccccCCcccccCcc---eEEccCC-cCCCcccccCCCCCcEEEcCCCccCCcccccCCCC
Q 018662 113 D--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK---ELYVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTN 186 (352)
Q Consensus 113 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 186 (352)
. +..+++|++|++++|.+..++. ...+.+|+ +|++++| .+..+.. ..+..+++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------~~~~~l~~ 156 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------NAFQGLCN 156 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------TTTTTTBS
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc--------------------ccccchhc
Confidence 4 6778899999999988877654 33344454 6666555 4443211 12344445
Q ss_pred Cc-EEEccCCcccee---cCCCCCCCCEEEcCCCc-CCCCc--Ccccc-ccCcEEECCCCCCCCCCCCCCCCCCcEEEcC
Q 018662 187 LQ-ELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMK--GFEEC-IALEELYLSHNGISKMEGLSTLVNLHVLDVS 258 (352)
Q Consensus 187 L~-~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~-~~~~~--~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 258 (352)
|+ .+++++|.+... .+.. ++|+.|++++|. ++..+ .+..+ ++|+.|++++|.++.++.. .+++|+.|+++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 55 555555544433 1222 566666666663 65553 35556 7777777777777766543 55677777776
Q ss_pred CC
Q 018662 259 SN 260 (352)
Q Consensus 259 ~n 260 (352)
++
T Consensus 235 ~~ 236 (239)
T 2xwt_C 235 NT 236 (239)
T ss_dssp TC
T ss_pred Cc
Confidence 54
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=162.88 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCCCCEEEcCCCcCCCCcC-----ccccccCcEEECCCCCCCCC--CCCCCC---CCCcEEEcCCCcCCCcc-cccCCCC
Q 018662 205 LKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISKM--EGLSTL---VNLHVLDVSSNKLTLVD-DIQNLSR 273 (352)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~--~~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~~ 273 (352)
+++|++|++++|.++..+. +..+++|++|++++|.+.+. +.+..+ ++|++|++++|+++.++ .+ .++
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~ 273 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAK 273 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSC
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCC
Confidence 3444444444444443321 23345555555555555443 112222 45555555555555442 12 145
Q ss_pred CCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcc
Q 018662 274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 274 L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
|++|++++|+|+.++. ...+++|+.|++++|++.
T Consensus 274 L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQ-----PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSCCC-----TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCCch-----hhhCCCccEEECcCCCCC
Confidence 5566666666554431 234455666666666543
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.8e-20 Score=159.82 Aligned_cols=188 Identities=23% Similarity=0.391 Sum_probs=121.6
Q ss_pred CCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEcc
Q 018662 70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS 149 (352)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 149 (352)
++..+.+....+.+. ..+..+++|+.|++++|.+..++.+..+++|++|++++|.+.+..+ ...+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSE-----ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccc-----cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence 344455666665542 2345678899999999999888888888999999999998887765 5557788888888
Q ss_pred CCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCCcCccccc
Q 018662 150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECI 228 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 228 (352)
+|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|+.|++++|.+...+.+..++
T Consensus 99 ~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~ 178 (291)
T 1h6t_A 99 ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178 (291)
T ss_dssp SSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred CCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCC
Confidence 888777767777777777877777776666666666666666666655544 3444455555555555544443344444
Q ss_pred cCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCC
Q 018662 229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (352)
Q Consensus 229 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 263 (352)
+|+.|++++|.+++++.+..+++|+.|++++|++.
T Consensus 179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 55555555554444444444444455554444443
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=9e-20 Score=158.61 Aligned_cols=188 Identities=21% Similarity=0.302 Sum_probs=123.2
Q ss_pred ccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccC
Q 018662 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127 (352)
Q Consensus 48 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 127 (352)
+..+.+....+..+.. +..+++|++|++++|.+... +.+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCC
Confidence 3334455555554322 34566777777777766553 23555677777777777777666666677777777777
Q ss_pred CCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCCC
Q 018662 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLK 206 (352)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~ 206 (352)
|.+...+. ...+++|++|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+... .+..++
T Consensus 100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~ 178 (291)
T 1h6t_A 100 NKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178 (291)
T ss_dssp SCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred CcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCC
Confidence 77666443 3445677777777777766666666777777777777766666666777777777777766655 566667
Q ss_pred CCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC
Q 018662 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242 (352)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 242 (352)
+|+.|++++|.++..+.+..+++|+.|++++|.+..
T Consensus 179 ~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 777777777777666666667777777777776655
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=159.03 Aligned_cols=218 Identities=16% Similarity=0.088 Sum_probs=172.3
Q ss_pred CcccEEEcCCCCCC--cchhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCC-CC-----Cc
Q 018662 46 TNLTELDLTANRLT--SLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-----VS 115 (352)
Q Consensus 46 ~~L~~L~l~~~~l~--~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-----~~ 115 (352)
..++.+.+.++.+. .+... +..+++|++|++++|.+.+..+..+.. ..+++|++|++++|.+... +. +.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35788999998886 23222 345678999999999998764432210 6789999999999998852 21 34
Q ss_pred cccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc------ccccCCCCCcEEEcCCCccCCccc-----ccC
Q 018662 116 IFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRLRVMEN-----LQN 183 (352)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~l~~~~~-----~~~ 183 (352)
.+++|++|++++|.+....+ ....+++|++|++++|.+... ..+..+++|++|++++|.++.++. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 68899999999999987764 444588999999999986541 224688999999999999975543 467
Q ss_pred CCCCcEEEccCCcccee---cCCCC---CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEc
Q 018662 184 LTNLQELWLGRNRIKVV---NLCGL---KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257 (352)
Q Consensus 184 ~~~L~~L~l~~~~l~~~---~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 257 (352)
+++|++|++++|.+... .+..+ ++|++|++++|.++.+|... .++|+.|++++|++++++.+..+++|+.|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCchhhhCCCccEEEC
Confidence 89999999999998875 24444 79999999999999886422 3899999999999999888888999999999
Q ss_pred CCCcCCCc
Q 018662 258 SSNKLTLV 265 (352)
Q Consensus 258 ~~n~l~~~ 265 (352)
++|++++.
T Consensus 302 ~~N~l~~~ 309 (310)
T 4glp_A 302 DGNPFLVP 309 (310)
T ss_dssp SSTTTSCC
T ss_pred cCCCCCCC
Confidence 99998753
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.7e-19 Score=149.67 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=140.5
Q ss_pred ccccCceeecCCCCCcCCCC--CCCCCcccEEEcCCCC-CCcchh-hhhcCCCCcEEeccC-CccCccccccccccccCC
Q 018662 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTSLDS-RISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA 96 (352)
Q Consensus 22 ~~~~l~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~ 96 (352)
.+.++++|+++++++++++. +..+++|++|++++|+ ++.++. .|.++++|++|++++ |.++.. ....|..++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i---~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI---DPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE---CTTSEECCT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc---CHHHhCCCC
Confidence 45689999999999999876 4457999999999997 998887 588999999999998 898875 334577899
Q ss_pred CCcEEEccCCCCCCCCCCccccCCc---EEEccCC-CcccccCC-cccccCcc-eEEccCCcCCCcc-cccCCCCCcEEE
Q 018662 97 GLEELILRDNKLMKIPDVSIFKKLS---VFDVSFN-EITSSHGL-SNVTDTLK-ELYVSKNEVPKME-EIEHFHDLQILE 169 (352)
Q Consensus 97 ~L~~L~l~~~~l~~l~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~ 169 (352)
+|++|++++|.+..+|.+..+++|+ +|++++| .+..+++. +..+++|+ +|++++|.+..++ .....++|+.++
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence 9999999999999999888888888 9999999 88877654 44578888 9999888776532 122225667777
Q ss_pred cCCCc-cCCc--ccccCC-CCCcEEEccCCccceecCCCCCCCCEEEcCC
Q 018662 170 FGSNR-LRVM--ENLQNL-TNLQELWLGRNRIKVVNLCGLKCIKKISLQS 215 (352)
Q Consensus 170 l~~~~-l~~~--~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 215 (352)
+++|+ +..+ ..+..+ ++|+.|++++|.+.......+++|+.|.+.+
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTT
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccC
Confidence 76663 5422 224444 5555555555555444333444455554443
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=8.2e-20 Score=173.69 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=120.0
Q ss_pred cccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEcc
Q 018662 47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS 126 (352)
Q Consensus 47 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~ 126 (352)
.+..+.+..+.+..+.. +..+++|+.|+++++.+... +.+..+++|+.|+|++|.+..++++..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc
Confidence 45555666666665433 45677777888877777653 2456677788888877777777667777777777777
Q ss_pred CCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee-cCCCC
Q 018662 127 FNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205 (352)
Q Consensus 127 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~ 205 (352)
+|.+..++ ....+++|+.|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+... .+..+
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l 174 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred CCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccC
Confidence 77776644 23345667777777776666656666666666666666665555556666666666666655544 44555
Q ss_pred CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC
Q 018662 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242 (352)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 242 (352)
++|+.|++++|.+...+.+..+++|+.|++++|.+..
T Consensus 175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 5566666665555555555555555555555555544
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.9e-18 Score=154.38 Aligned_cols=231 Identities=19% Similarity=0.246 Sum_probs=158.3
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcE-EEc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE-LIL 103 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~-L~l 103 (352)
-+.+++++++++.+|. .+++++++|++++|+|+++|.. |.++++|++|++++|.+.+.. +...|..++++++ +.+
T Consensus 11 ~~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i--~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI--EADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE--CTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc--ChhHhhcchhhhhhhcc
Confidence 4678999999999986 5688999999999999999875 899999999999999986643 2235677888776 556
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccCCcc-cccCcceEEccCC-cCCCc--ccccCC-CCCcEEEcCCCccC
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKN-EVPKM--EEIEHF-HDLQILEFGSNRLR 176 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~--~~~~~~-~~L~~L~l~~~~l~ 176 (352)
.+|++..+++ +..+++|++|++++|.+...++... ....+..+++.++ .+..+ ..+..+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6789998865 7889999999999999988765433 2456777777553 34432 223333 35677777777775
Q ss_pred Cc-ccccCCCCCcEEEccC-Ccccee---cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCC-CCCCCCCCCCCC
Q 018662 177 VM-ENLQNLTNLQELWLGR-NRIKVV---NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN-GISKMEGLSTLV 250 (352)
Q Consensus 177 ~~-~~~~~~~~L~~L~l~~-~~l~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~ 250 (352)
.+ .......+++.+.+.+ |.+... .+..+++|+.|++++|+++.+|. ..+.+|+.|.+.++ .++.+|.+..++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhCc
Confidence 33 2334445666776654 444444 34566667777777776666653 22445555554443 455566666666
Q ss_pred CCcEEEcCCC
Q 018662 251 NLHVLDVSSN 260 (352)
Q Consensus 251 ~L~~L~l~~n 260 (352)
+|+.+++.++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 6666666543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=3.3e-18 Score=145.55 Aligned_cols=170 Identities=24% Similarity=0.336 Sum_probs=126.4
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEE
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 102 (352)
.+.++++++++.++.+|. .+++++++|++++|.+..++. .+.++++|++|++++|.++... ...+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC---HhHhccCCcCCEEE
Confidence 467889999999999886 566899999999999997765 4889999999999999998853 33467789999999
Q ss_pred ccCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCC
Q 018662 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV 177 (352)
Q Consensus 103 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~ 177 (352)
+++|.+..++. +..+++|++|++++|.+..+++.. ..+++|++|++++|.+..+. .+..+++|++|++++|.+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998875 678899999999999888766543 34677777777777766632 35556666666666665543
Q ss_pred cc--cccCCCCCcEEEccCCcc
Q 018662 178 ME--NLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 178 ~~--~~~~~~~L~~L~l~~~~l 197 (352)
++ .+..+++|+.+++++|.+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHHhCCCCCCEEEeeCCce
Confidence 32 244444444444444443
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.1e-18 Score=165.92 Aligned_cols=189 Identities=24% Similarity=0.342 Sum_probs=104.5
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
+..+.+....+.++.....+++|++|++++|.+..++ .+..+++|++|+|++|.+.... .+..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-----~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-----PLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh-----hhccCCCCCEEECcC
Confidence 3444445555554444444455566666666555554 3555566666666665555431 144555566666666
Q ss_pred CCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCC
Q 018662 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT 185 (352)
Q Consensus 106 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 185 (352)
|.+..++.+..+++|+.|++++|.+..+.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+.....+..++
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~ 175 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 175 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCC
Confidence 655555555555666666666665555422 3334556666666665555555555666666666666555443455566
Q ss_pred CCcEEEccCCcccee-cCCCCCCCCEEEcCCCcCCCC
Q 018662 186 NLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM 221 (352)
Q Consensus 186 ~L~~L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~ 221 (352)
+|+.|++++|.+... .+..+++|+.|++++|.+...
T Consensus 176 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 666666666655554 455556666666666655444
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1e-20 Score=181.05 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=67.4
Q ss_pred cccccCceeecCCCCCcCCCC--CC-CCCcccEEEcCCC-CCCc--chhhhhcCCCCcEEeccCCccCcccccccccc-c
Q 018662 21 EIDLSNTVLDLTSFQLHDLDS--VE-FPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-D 93 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~--~~-~~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~ 93 (352)
...++|++|+++++.+++... +. .+++|++|++++| .+.. ++..+.++++|++|++++|.+++..+..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 345678888888877654321 11 3578888888888 5543 55555678888888888887766543333333 2
Q ss_pred cCCCCcEEEccCCCCCCCC-----C-CccccCCcEEEccCC
Q 018662 94 ALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFN 128 (352)
Q Consensus 94 ~l~~L~~L~l~~~~l~~l~-----~-~~~~~~L~~L~l~~~ 128 (352)
.+++|++|++++|. ..+. . +..+++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 56778888887775 2221 1 234577777777766
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=7.7e-20 Score=164.18 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCcEEEccCCcccee-------cCCCC-CCCCEEEcCCCcCCCC-----c-Cccc-cccCcEEECCCCCCCCCC------
Q 018662 186 NLQELWLGRNRIKVV-------NLCGL-KCIKKISLQSNRLTSM-----K-GFEE-CIALEELYLSHNGISKME------ 244 (352)
Q Consensus 186 ~L~~L~l~~~~l~~~-------~~~~~-~~L~~L~l~~~~~~~~-----~-~~~~-~~~L~~L~l~~n~l~~~~------ 244 (352)
+|++|++++|.+... .+..+ ++|+.|++++|.+... + .+.. .++|+.|++++|.+++..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 555555555554433 12223 3666666666666552 1 2222 346777777777776642
Q ss_pred CCCCCCCCcEEEcCCCcCCCc---------ccccCCCCCCeEEcCCCCCcch
Q 018662 245 GLSTLVNLHVLDVSSNKLTLV---------DDIQNLSRLEDLWLNDNQIESL 287 (352)
Q Consensus 245 ~~~~~~~L~~L~l~~n~l~~~---------~~~~~~~~L~~L~l~~n~i~~~ 287 (352)
.+..+++|++|++++|.+.++ ..+..+++|++|++++|++...
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 245667777777777774333 3455667777888888877653
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.4e-19 Score=162.59 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCcEEEccCCcccee-------cCCCC-CCCCEEEcCCCcCCCCc------Ccccc-ccCcEEECCCCCCCCC-----C-
Q 018662 186 NLQELWLGRNRIKVV-------NLCGL-KCIKKISLQSNRLTSMK------GFEEC-IALEELYLSHNGISKM-----E- 244 (352)
Q Consensus 186 ~L~~L~l~~~~l~~~-------~~~~~-~~L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~n~l~~~-----~- 244 (352)
+|++|++++|.+... .+... ++|++|++++|.++... .+..+ ++|+.|++++|.+.+. +
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 455555555554432 12233 37777777777765542 12334 4777777777776652 1
Q ss_pred CCCC-CCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHH----HHHHhccccCccEeeccCCCccc
Q 018662 245 GLST-LVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESI----VEAVAGSRETLTTIYLENNPQNL 313 (352)
Q Consensus 245 ~~~~-~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 313 (352)
.+.. .++|++|++++|.+++. ..+..+++|+.|++++|.+..+... +...+..+++|+.|++++|++..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 1222 34677777777777654 2345567777777777774433221 12234455667777777776544
Q ss_pred c
Q 018662 314 Q 314 (352)
Q Consensus 314 ~ 314 (352)
.
T Consensus 299 ~ 299 (362)
T 3goz_A 299 S 299 (362)
T ss_dssp G
T ss_pred c
Confidence 3
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.8e-20 Score=167.67 Aligned_cols=259 Identities=21% Similarity=0.227 Sum_probs=196.7
Q ss_pred EcCCCCCCcchhhhhcCCCCcEEeccCCccCcccccccc-ccccCCCCcEEEccCCCCCCC----CC--------Ccccc
Q 018662 52 DLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLMKI----PD--------VSIFK 118 (352)
Q Consensus 52 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l----~~--------~~~~~ 118 (352)
.++...+..++..+..+++|++|++++|.+....+..++ .+..+++|++|++++|.+..+ |. +..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 333444446777788999999999999998875433332 356789999999999876643 22 25789
Q ss_pred CCcEEEccCCCccc-----ccCCcccccCcceEEccCCcCCCc--c----cccCC---------CCCcEEEcCCCccC--
Q 018662 119 KLSVFDVSFNEITS-----SHGLSNVTDTLKELYVSKNEVPKM--E----EIEHF---------HDLQILEFGSNRLR-- 176 (352)
Q Consensus 119 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~---------~~L~~L~l~~~~l~-- 176 (352)
+|++|++++|.+.. ++.....+++|++|++++|.+... . .+..+ ++|++|++++|.+.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999999876 233344578999999999998642 1 23333 89999999999885
Q ss_pred Ccc----cccCCCCCcEEEccCCcccee--------cCCCCCCCCEEEcCCCcCCC-----Cc-CccccccCcEEECCCC
Q 018662 177 VME----NLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTS-----MK-GFEECIALEELYLSHN 238 (352)
Q Consensus 177 ~~~----~~~~~~~L~~L~l~~~~l~~~--------~~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~n 238 (352)
.++ .+..+++|+.|++++|.+... .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 222 456788999999999998732 56678999999999999852 23 4678899999999999
Q ss_pred CCCCC------CCC--CCCCCCcEEEcCCCcCCC-----c-ccc-cCCCCCCeEEcCCCCCcchHHHHHHHhccccCccE
Q 018662 239 GISKM------EGL--STLVNLHVLDVSSNKLTL-----V-DDI-QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303 (352)
Q Consensus 239 ~l~~~------~~~--~~~~~L~~L~l~~n~l~~-----~-~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~ 303 (352)
.+++. ..+ ..+++|++|++++|.+++ + ..+ ..+++|+.|++++|+++.....+..+...++.++.
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 98864 233 448899999999999987 4 334 56899999999999999766444555555677776
Q ss_pred eeccCCC
Q 018662 304 IYLENNP 310 (352)
Q Consensus 304 L~l~~n~ 310 (352)
+++..+.
T Consensus 335 ~~l~~~d 341 (386)
T 2ca6_A 335 GELDELD 341 (386)
T ss_dssp CEECCCC
T ss_pred chhhhcc
Confidence 6666553
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.5e-19 Score=153.48 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=120.4
Q ss_pred cccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCC
Q 018662 116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195 (352)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 195 (352)
.+.++..++++++.+..+. ....+++|++|++++|.+..++.+..+++|++|++++|.+...+.+..+++|+.|++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 4556667777777776655 234467788888888877776677777788888888877766555777777777777777
Q ss_pred cccee-cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCC
Q 018662 196 RIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274 (352)
Q Consensus 196 ~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L 274 (352)
.+... .+.. ++|+.|++++|.++..+.+..+++|+.|++++|++++++.+..+++|+.|++++|++++++.+..+++|
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 77665 2233 677777777777776666667777777777777777766666677777777777777766666667777
Q ss_pred CeEEcCCCCCcch
Q 018662 275 EDLWLNDNQIESL 287 (352)
Q Consensus 275 ~~L~l~~n~i~~~ 287 (352)
+.|++++|+++..
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 7777777776654
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=8.1e-18 Score=143.14 Aligned_cols=172 Identities=20% Similarity=0.287 Sum_probs=96.7
Q ss_pred CCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCc
Q 018662 119 KLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR 196 (352)
Q Consensus 119 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 196 (352)
..++++++++.+..++... .+.++.|++++|.+... ..+..+++|++|++++|.+.....
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------- 76 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA---------------- 76 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH----------------
Confidence 4556666666666555322 24566666666655542 234445555555555554432211
Q ss_pred cceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccC
Q 018662 197 IKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQN 270 (352)
Q Consensus 197 l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~ 270 (352)
..+..+++|++|++++|.++..+ .+..+++|++|++++|.++.++. +..+++|++|++++|.++++ ..+..
T Consensus 77 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 77 ---GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp ---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ---hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 02344555555555555555543 34556666666666666666543 45566666666666666665 23556
Q ss_pred CCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccc
Q 018662 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQ 314 (352)
Q Consensus 271 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 314 (352)
+++|+.|++++|.++.++. ..+..+++|+.|++++|++.|.
T Consensus 154 l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCceeCC
Confidence 6666666666666665542 2345566666777777766665
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=5.7e-19 Score=156.84 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred cccCCcEEEccCCCccc--ccCCcccccCcceEEccCCcCCC--cccccCCCCCcEEEcCCC-ccCC--c-ccccCCCCC
Q 018662 116 IFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSN-RLRV--M-ENLQNLTNL 187 (352)
Q Consensus 116 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~-~l~~--~-~~~~~~~~L 187 (352)
.+++|++|++++|.+.. ++.....+++|++|++++|.+.. +..+..+++|++|++++| .+.. + ..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 34444444444444332 12222234445555555544332 233455566666666665 3431 2 224556677
Q ss_pred cEEEccCC-cccee----cCCCCC-CCCEEEcCCCc--CCC--Cc-CccccccCcEEECCCCC-CCC--CCCCCCCCCCc
Q 018662 188 QELWLGRN-RIKVV----NLCGLK-CIKKISLQSNR--LTS--MK-GFEECIALEELYLSHNG-ISK--MEGLSTLVNLH 253 (352)
Q Consensus 188 ~~L~l~~~-~l~~~----~~~~~~-~L~~L~l~~~~--~~~--~~-~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~L~ 253 (352)
++|++++| .+... .+..++ +|++|++++|. ++. .+ .+..+++|+.|++++|. +++ ++.+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 77777776 65542 345566 77777777773 332 22 34567888888888887 443 44567778899
Q ss_pred EEEcCCCc-CCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 254 VLDVSSNK-LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 254 ~L~l~~n~-l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+|++++|. +... ..+..+++|+.|++++| ++. +...... .++..|++++|.+++..
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~---~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLK---EALPHLQINCSHFTTIA 309 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHH---HHSTTSEESCCCSCCTT
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHH---hhCcceEEecccCcccc
Confidence 99998885 3322 35777899999999999 553 2223332 33566668888877766
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2e-17 Score=155.68 Aligned_cols=177 Identities=20% Similarity=0.314 Sum_probs=145.4
Q ss_pred CCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCc
Q 018662 96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR 174 (352)
Q Consensus 96 ~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (352)
.+|+.|++++|.+..+|. + .++|++|++++|.+..++ ..+++|++|++++|.+..++.+.. +|++|++++|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence 489999999999999887 4 488999999999998766 447899999999999888655433 89999999999
Q ss_pred cCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCCCCCCCCC--
Q 018662 175 LRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL-- 252 (352)
Q Consensus 175 l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L-- 252 (352)
+..++. .+++|+.|++++|.+..... .+++|+.|++++|.++.+|.+. ++|+.|++++|.++.++.+.. +|
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~ 204 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHH 204 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC-------
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhc
Confidence 876655 67889999999998887643 6788999999999988887644 889999999999988877433 67
Q ss_pred -----cEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcc
Q 018662 253 -----HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 253 -----~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~ 286 (352)
+.|++++|+++.+ ..+..+++|+.|++++|+++.
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 8999999999888 446668899999999999875
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=4.1e-17 Score=153.60 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=148.4
Q ss_pred CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEc
Q 018662 69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148 (352)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 148 (352)
.+|+.|++++|.+++. | ..+ .++|++|++++|.+..+| ..+++|++|++++|.+.+++. .. .+|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p---~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-P---DNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-C---SCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEEC
T ss_pred CCccEEEeCCCCCCcc-C---HhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh--cCCCEEEC
Confidence 3899999999998873 2 122 378999999999999998 668999999999999998766 22 39999999
Q ss_pred cCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcCccccc
Q 018662 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECI 228 (352)
Q Consensus 149 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 228 (352)
++|.+..++. .+++|+.|++++|.++.++. .+++|+.|++++|.+..... -.++|+.|++++|.++.+|.+..
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~~~~-- 200 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPAVPV-- 200 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCC---
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhhHHH--
Confidence 9999988655 78999999999999986655 67899999999999887633 22899999999999998876433
Q ss_pred cC-------cEEECCCCCCCCCCC-CCCCCCCcEEEcCCCcCCCc
Q 018662 229 AL-------EELYLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV 265 (352)
Q Consensus 229 ~L-------~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 265 (352)
+| +.|++++|.++.++. +..+++|+.|++++|++++.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 67 999999999999874 66789999999999999765
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.6e-18 Score=147.10 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=99.4
Q ss_pred ccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
..+..++++++.+++++.+..+++|++|++++|.++.++ .+..+++|++|++++|.+++.. + +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~----~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS----P-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG----G-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh----h-hccCCCCCEEEC
Confidence 345666677777776665555677777777777777666 5667777777777777766632 1 556677777777
Q ss_pred cCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccC
Q 018662 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (352)
Q Consensus 104 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 183 (352)
++|.+..++.+.. ++|++|++++|.+..+.. ...+++|+.|++++|.+..++.+..+++|+.|++++|.+.....+..
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~ 170 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR 170 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTT
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhcc
Confidence 7777776665444 666666666666665432 23345555555555555554445555555555555555544344444
Q ss_pred CCCCcEEEccCCcc
Q 018662 184 LTNLQELWLGRNRI 197 (352)
Q Consensus 184 ~~~L~~L~l~~~~l 197 (352)
+++|+.|++++|.+
T Consensus 171 l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 171 LKKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCCCEEeCCCCcc
Confidence 44444444444443
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.5e-19 Score=159.20 Aligned_cols=234 Identities=15% Similarity=0.153 Sum_probs=153.6
Q ss_pred CcccEEEcCCCCCCcchhhhhcC--CCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC--CCC-CccccCC
Q 018662 46 TNLTELDLTANRLTSLDSRISHL--SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK--IPD-VSIFKKL 120 (352)
Q Consensus 46 ~~L~~L~l~~~~l~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~-~~~~~~L 120 (352)
..++.++++++.+. +..+..+ ++++.|+++++.+.+.. ..+..+++|++|++++|.+.. ++. +..+++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccc----hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 34677777777666 3445555 77788888877776642 224456778888887777653 443 5667778
Q ss_pred cEEEccCCCcccc-cCCcccccCcceEEccCC-cCCC--c-ccccCCCCCcEEEcCCC-ccCC---cccccCCC-CCcEE
Q 018662 121 SVFDVSFNEITSS-HGLSNVTDTLKELYVSKN-EVPK--M-EEIEHFHDLQILEFGSN-RLRV---MENLQNLT-NLQEL 190 (352)
Q Consensus 121 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~~-~l~~---~~~~~~~~-~L~~L 190 (352)
++|++++|.+... ......+++|++|++++| .+.. + ..+..+++|++|++++| .++. ...+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 8888887776532 222333677888888877 4543 2 23566788888888887 6652 23466777 88888
Q ss_pred EccCCc--ccee----cCCCCCCCCEEEcCCCc-CCCC--cCccccccCcEEECCCCC-CCC--CCCCCCCCCCcEEEcC
Q 018662 191 WLGRNR--IKVV----NLCGLKCIKKISLQSNR-LTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVS 258 (352)
Q Consensus 191 ~l~~~~--l~~~----~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~l~~n~-l~~--~~~~~~~~~L~~L~l~ 258 (352)
++++|. +... .+..+++|+.|++++|. ++.. +.+..+++|++|++++|. +.. +..+..+++|++|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 888873 4322 44567888888888887 4432 456778888888888884 322 2246678889999998
Q ss_pred CCcCCCcccccCC-CCCCeEEcCCCCCcch
Q 018662 259 SNKLTLVDDIQNL-SRLEDLWLNDNQIESL 287 (352)
Q Consensus 259 ~n~l~~~~~~~~~-~~L~~L~l~~n~i~~~ 287 (352)
+| +... .+..+ ..+..|++++|.+++.
T Consensus 281 ~~-i~~~-~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 281 GI-VPDG-TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TS-SCTT-CHHHHHHHSTTSEESCCCSCCT
T ss_pred Cc-cCHH-HHHHHHhhCcceEEecccCccc
Confidence 88 4332 22222 2366677888888864
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=3.8e-20 Score=177.05 Aligned_cols=287 Identities=18% Similarity=0.215 Sum_probs=182.4
Q ss_pred cccccccccCceeecCCCCCcCCCC-----C-CCCCcccEEEcCCCC--CC--cchhhhhcCCCCcEEeccCC-ccCccc
Q 018662 17 DQAVEIDLSNTVLDLTSFQLHDLDS-----V-EFPTNLTELDLTANR--LT--SLDSRISHLSNLKKLSLRQN-LIDDAA 85 (352)
Q Consensus 17 ~~~~~~~~~l~~L~l~~~~l~~~~~-----~-~~~~~L~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~~-~~~~~~ 85 (352)
..+....++|++|+++++.+++... + ..+++|++|++++|. +. .++..+.++++|++|++++| .+.+
T Consensus 149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-- 226 (594)
T 2p1m_B 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-- 226 (594)
T ss_dssp HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--
T ss_pred HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--
Confidence 3445567899999999998776431 1 246799999999997 33 23334567899999999988 3332
Q ss_pred cccccccccCCCCcEEEccCCCC-------------------------------CCCCC-CccccCCcEEEccCCCcccc
Q 018662 86 IEPISRWDALAGLEELILRDNKL-------------------------------MKIPD-VSIFKKLSVFDVSFNEITSS 133 (352)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~~~l-------------------------------~~l~~-~~~~~~L~~L~l~~~~~~~~ 133 (352)
....+..+++|++|++..+.. ..++. +..+++|++|++++|.+...
T Consensus 227 --l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 227 --LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp --HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred --HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 223345677788777654421 11222 22467888888888875432
Q ss_pred --cCCcccccCcceEEccCCcCCC--ccc-ccCCCCCcEEEcCC---------CccC--Ccccc-cCCCCCcEEEccCCc
Q 018662 134 --HGLSNVTDTLKELYVSKNEVPK--MEE-IEHFHDLQILEFGS---------NRLR--VMENL-QNLTNLQELWLGRNR 196 (352)
Q Consensus 134 --~~~~~~~~~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~l~~---------~~l~--~~~~~-~~~~~L~~L~l~~~~ 196 (352)
......+++|++|++.+| +.. +.. ...+++|++|++.+ +.+. .+..+ ..+++|+.|.+..+.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 122234678888888877 322 111 23477888888733 2222 11112 347788888777777
Q ss_pred ccee---cC-CCCCCCCEEEcC--C----CcCCCCcC-------ccccccCcEEECCCCCCCC--CCCCC-CCCCCcEEE
Q 018662 197 IKVV---NL-CGLKCIKKISLQ--S----NRLTSMKG-------FEECIALEELYLSHNGISK--MEGLS-TLVNLHVLD 256 (352)
Q Consensus 197 l~~~---~~-~~~~~L~~L~l~--~----~~~~~~~~-------~~~~~~L~~L~l~~n~l~~--~~~~~-~~~~L~~L~ 256 (352)
+... .+ ..+++|+.|+++ + +.++..+. +..+++|+.|++++ .+++ ++.+. .+++|+.|+
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 6654 22 246888888888 3 34443321 45678888888876 4443 12222 267799999
Q ss_pred cCCCcCCCc--ccc-cCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCc
Q 018662 257 VSSNKLTLV--DDI-QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQ 311 (352)
Q Consensus 257 l~~n~l~~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~ 311 (352)
+++|.+++. ..+ ..+++|++|++++|.+++ ..+......+++|+.|++++|+.
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--HHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--HHHHHHHHhCCCCCEEeeeCCCC
Confidence 998888654 222 568889999999999854 33344556688899999999875
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=135.71 Aligned_cols=145 Identities=19% Similarity=0.302 Sum_probs=67.3
Q ss_pred cCcceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCc
Q 018662 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR 217 (352)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~ 217 (352)
++|++|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+... .+..+++|++|++++|.
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 344444444444443333444445555555555444444444555555555555544431 33444455555555554
Q ss_pred CCCC--cCccccccCcEEECCCCC-CCCCCCCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCc
Q 018662 218 LTSM--KGFEECIALEELYLSHNG-ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285 (352)
Q Consensus 218 ~~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~ 285 (352)
++.. ..+..+++|+.|++++|. +..++.+..+++|++|++++|.+++++.+..+++|+.|++++|+|.
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 4431 234444555555555554 4444444444455555555555544444444455555555555443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=2.4e-16 Score=132.07 Aligned_cols=157 Identities=23% Similarity=0.264 Sum_probs=131.4
Q ss_pred ccccccccccCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcc-hhhhhcCCCCcEEeccCCccCcccccccccccc
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (352)
....-....+-+.++++++.++.+|. ..+++|++|++++|.++.+ +..+.++++|++|++++|.++.. ....|..
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i---~~~~~~~ 86 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL---PVGVFDS 86 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTT
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc---Chhhccc
Confidence 33444445567889999999999986 6679999999999999987 45589999999999999999775 2334677
Q ss_pred CCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcc--cccCCCCCcEEEc
Q 018662 95 LAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEF 170 (352)
Q Consensus 95 l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l 170 (352)
+++|++|++++|.+..++. +..+++|++|++++|.+..++.....+++|++|++++|.+..+. .+..+++|+.+++
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 9999999999999998876 67899999999999999988776677889999999999888743 4777888899999
Q ss_pred CCCccC
Q 018662 171 GSNRLR 176 (352)
Q Consensus 171 ~~~~l~ 176 (352)
.+|++.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 888775
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.8e-16 Score=141.48 Aligned_cols=213 Identities=18% Similarity=0.220 Sum_probs=168.7
Q ss_pred cccCceeecCCCCCcCCCCC--CCCCcccEEEcCCCCCC-cchhh-hhcCCCCcE-EeccCCccCccccccccccccCCC
Q 018662 23 DLSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLT-SLDSR-ISHLSNLKK-LSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 23 ~~~l~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~l~-~l~~~-~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
++++++|++++|+|+.++.. ..+++|++|++++|.+. .++.. |.+++++++ +.+++|.++... ...|..+++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~---~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN---PEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC---TTSBCCCTT
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC---chhhhhccc
Confidence 57899999999999999864 45799999999999986 56654 788998876 555668888763 346778999
Q ss_pred CcEEEccCCCCCCCCC--CccccCCcEEEccC-CCcccccCCc--ccccCcceEEccCCcCCCc-ccccCCCCCcEEEcC
Q 018662 98 LEELILRDNKLMKIPD--VSIFKKLSVFDVSF-NEITSSHGLS--NVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFG 171 (352)
Q Consensus 98 L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~-~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~ 171 (352)
|++|++++|.+..++. +....++..+++.+ +.+..++... .....++.|++++|.+..+ .......+++++.+.
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence 9999999999998887 34456778888866 4565554332 2245789999999999885 345566789999997
Q ss_pred C-CccCCcc--cccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCC-cCCCCcCccccccCcEEECCCC
Q 018662 172 S-NRLRVME--NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSN-RLTSMKGFEECIALEELYLSHN 238 (352)
Q Consensus 172 ~-~~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~n 238 (352)
+ +.++.++ .+..+++|+.|++++|.+.......+.+|+.|.+.++ .++..|.+..+++|+.+++.++
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 5 6676553 4789999999999999999887777889999988765 6777788889999999999763
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7e-17 Score=132.08 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=101.4
Q ss_pred ccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcCC
Q 018662 93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172 (352)
Q Consensus 93 ~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 172 (352)
..+++|++|++++|.+..++.+..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-----------------------~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-----------------------NPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-----------------------GGGTTCTTCCEEEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-----------------------hhhhcCCCCCEEEeEC
Confidence 34567777777777777766666677777777776654433 3344455555555555
Q ss_pred CccCC--cccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCc-CCCCcCccccccCcEEECCCCCCCCCCCC
Q 018662 173 NRLRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISKMEGL 246 (352)
Q Consensus 173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 246 (352)
|.+.. +..+..+++|+.|++++|.+... .+..+++|+.|++++|. +...+.+..+++|+.|++++|.+++++.+
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l 177 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI 177 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTG
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHh
Confidence 55542 44556666677777777666652 56677778888888886 77777778888888999988888888778
Q ss_pred CCCCCCcEEEcCCCcCCC
Q 018662 247 STLVNLHVLDVSSNKLTL 264 (352)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~ 264 (352)
..+++|++|++++|++.+
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 888889999998888754
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=4.2e-16 Score=129.70 Aligned_cols=147 Identities=20% Similarity=0.344 Sum_probs=121.8
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+.++++++.++.+|. .+++++++|++++|.++.++. .|..+++|++|++++|.++... ...|..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC---TTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC---HHHhhCCcCCCEEECC
Confidence 4688999999999986 566899999999999998877 5889999999999999998863 3467788999999999
Q ss_pred CCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccC
Q 018662 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR 176 (352)
Q Consensus 105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~ 176 (352)
+|.+..+|. +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..+. .+..+++|+.+++.+|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999887 6789999999999999988754 3444778888888888877743 3667777777777777663
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=3.3e-16 Score=129.19 Aligned_cols=164 Identities=22% Similarity=0.275 Sum_probs=118.9
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEcc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 104 (352)
-+.++++++.++.++. ..++++++|++++|.++.++.. +..+++|++|++++|.++.. ....|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL---PNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc---ChhhcCCCCCcCEEECC
Confidence 3678888888888874 5678999999999999988765 68899999999999988875 22345678999999999
Q ss_pred CCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCcc--cccCCCCCcEEEcCCCccCCcc
Q 018662 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME 179 (352)
Q Consensus 105 ~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~ 179 (352)
+|.+..++. +..+++|++|++++|.+..+++. +..+++|++|++++|.+..+. .+..+++|+++++.+|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 999988776 67888999999999988876653 344677777777777766532 2555666666666665432
Q ss_pred cccCCCCCcEEEccCCccc
Q 018662 180 NLQNLTNLQELWLGRNRIK 198 (352)
Q Consensus 180 ~~~~~~~L~~L~l~~~~l~ 198 (352)
..++.++.+++..+.+.
T Consensus 162 --~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp --CCTTTTHHHHHHHHHCT
T ss_pred --cCCCCHHHHHHHHHhCC
Confidence 23444555544444333
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=6.1e-16 Score=128.69 Aligned_cols=144 Identities=25% Similarity=0.418 Sum_probs=107.6
Q ss_pred EEEcCCCccCCccc-ccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCC
Q 018662 167 ILEFGSNRLRVMEN-LQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI 240 (352)
Q Consensus 167 ~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l 240 (352)
.++..++.+..++. +. +.++.|++++|.+... .+..+++|+.|++++|.+... ..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44444444443322 22 4667777777766655 456677788888888877766 2577888888888888888
Q ss_pred CCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 241 SKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 241 ~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+.++. +..+++|++|++++|+++++ ..+..+++|+.|++++|.|+.++ ...+..+++|++|++++|+|.|++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECSG
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCCC
Confidence 88764 67788899999999998887 56778889999999999998766 334667889999999999998887
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=6.5e-16 Score=128.52 Aligned_cols=147 Identities=21% Similarity=0.359 Sum_probs=120.5
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchh--hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
-+.++++++.++.+|. .+++.+++|++++|.++.++. .|..+++|++|++++|.++... ...|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE---EGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC---HHHhCCCCCCCEEEC
Confidence 4689999999999876 667889999999999998743 3889999999999999998853 335778999999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccC
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR 176 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~ 176 (352)
++|.+..++. +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..+ ..+..+++|+.+++++|++.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999998876 7889999999999999988753 344577888888888887774 45677777777777777664
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=7.6e-16 Score=128.98 Aligned_cols=147 Identities=29% Similarity=0.347 Sum_probs=109.1
Q ss_pred cEEEcCCCccCCcccccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (352)
Q Consensus 166 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l 240 (352)
+.++.+++.+..++. ...++|+.|++++|.+... .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 344454444433222 1125666777777666655 4566778888888888877775 367788899999999988
Q ss_pred CCCCC--CCCCCCCcEEEcCCCcCCCc-ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 241 SKMEG--LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 241 ~~~~~--~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
+.++. +..+++|++|++++|+++.+ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|++.|++.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCCccCCcc
Confidence 88754 67888899999999998877 567788999999999999987763 456778899999999999998883
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=8.9e-16 Score=127.71 Aligned_cols=127 Identities=29% Similarity=0.415 Sum_probs=89.6
Q ss_pred CCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEc
Q 018662 186 NLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDV 257 (352)
Q Consensus 186 ~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 257 (352)
.++.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.++.++. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 345555555555544 2445666777777777666653 46677778888888887777643 667778888888
Q ss_pred CCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 258 ~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
++|+++++ ..+..+++|+.|++++|.++.++ ...+..+++|+.|++++|+|.|++
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCcCCC
Confidence 88888776 45777788888888888888663 234566788888888888888877
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1e-15 Score=137.21 Aligned_cols=130 Identities=27% Similarity=0.379 Sum_probs=97.3
Q ss_pred CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCcEE
Q 018662 183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVL 255 (352)
Q Consensus 183 ~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L 255 (352)
.+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+..++ .+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 556666666666666555 3566777777777777777664 3677888889999988888763 57788899999
Q ss_pred EcCCCcCCCcc--cc---cCCCCCCeEEcCCCCCcchHHHHHHHhccccC--ccEeeccCCCccccc
Q 018662 256 DVSSNKLTLVD--DI---QNLSRLEDLWLNDNQIESLESIVEAVAGSRET--LTTIYLENNPQNLQI 315 (352)
Q Consensus 256 ~l~~n~l~~~~--~~---~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~ 315 (352)
++++|.++.++ .+ ..+++|+.|++++|.|+.++.. .+..++. ++.|++++|||.|++
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEECCH
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCccCCc
Confidence 99999998872 23 5689999999999999987632 3344555 488999999999988
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1e-15 Score=137.23 Aligned_cols=169 Identities=25% Similarity=0.392 Sum_probs=137.8
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hh-cCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-IS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
-+.++++++.++.+|. .+++.+++|++++|.++.++.. +. ++++|++|++++|.++... ...|..+++|++|++
T Consensus 20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC---hhhccCCCCCCEEEC
Confidence 4689999999999886 6778899999999999988776 55 8999999999999998863 345778999999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCCccc--c---cCCCCCcEEEcCCCcc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKMEE--I---EHFHDLQILEFGSNRL 175 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~l 175 (352)
++|.+..++. +..+++|++|++++|.+..+.+ .+..+++|++|++++|.+..++. + ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999998776 7889999999999999988754 44558899999999999888432 3 5688999999999988
Q ss_pred CCcc--cccCCCC--CcEEEccCCccc
Q 018662 176 RVME--NLQNLTN--LQELWLGRNRIK 198 (352)
Q Consensus 176 ~~~~--~~~~~~~--L~~L~l~~~~l~ 198 (352)
..++ .+..++. ++.|++.+|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7543 3556665 477888887654
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=5e-15 Score=122.10 Aligned_cols=161 Identities=21% Similarity=0.341 Sum_probs=91.7
Q ss_pred ceEEccCCcCCCcccccCCCCCcEEEcCCCccCCcc--cccCCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcC
Q 018662 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL 218 (352)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~ 218 (352)
+.++++++.+..++ ....+++++|+++++.+..+. .+..+++|++|++++|.+... .+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45556655555432 122346777777777665332 245666666666666665554 244556666666666666
Q ss_pred CCCcC--ccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHH
Q 018662 219 TSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVE 292 (352)
Q Consensus 219 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~ 292 (352)
+..+. +..+++|++|++++|.+++++. +..+++|++|++++|.++++ ..+..+++|+.|++++|++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 55532 4556666666666666665542 45556666666666666555 234555666666666665442
Q ss_pred HHhccccCccEeeccCCCccccc
Q 018662 293 AVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 293 ~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.+++|+.|++.+|.+.+.+
T Consensus 163 ----~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTB
T ss_pred ----CCCCHHHHHHHHHhCCcee
Confidence 2355566666666555555
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.5e-18 Score=164.01 Aligned_cols=103 Identities=29% Similarity=0.394 Sum_probs=54.7
Q ss_pred CCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC-CCCCCCCCcEEEcCCCcCCCcccccCCCCCCeEEcCCCCCcc
Q 018662 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286 (352)
Q Consensus 208 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~i~~ 286 (352)
|+.|++++|.++.+|.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+++++.+..+++|+.|++++|.|+.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCC
Confidence 5555555555555555555555555555555555543 344555555555555555555555555555555555555554
Q ss_pred hHHHHHHHhccccCccEeeccCCCcc
Q 018662 287 LESIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
++. ...+..+++|+.|++++|++.
T Consensus 523 ~~~--p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 523 SAA--IQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SST--TGGGGGCTTCCEEECTTSGGG
T ss_pred CCC--cHHHhcCCCCCEEEecCCcCC
Confidence 410 112344555555555555433
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=116.45 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=105.3
Q ss_pred cEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc-CccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCC
Q 018662 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTL 264 (352)
Q Consensus 188 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~ 264 (352)
+.++++++.+........++++.|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 45677777666664444568899999999888775 6788899999999999999875 48889999999999999998
Q ss_pred c--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 265 V--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 265 ~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+ ..+..+++|+.|++++|.|+.++. ..+..+++|+.|++++|+|.|++
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSG
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCC
Confidence 8 468899999999999999997763 45677899999999999999988
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=3.2e-14 Score=115.70 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=106.5
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
-+.++++++.++.+|. .+++++++|++++|.++.+|..+.++++|++|++++|.++... ...|..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~---~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS---NQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC---HhHccCCCCCCEEECCC
Confidence 3689999999999986 5678999999999999999988999999999999999999863 34577899999999999
Q ss_pred CCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCC
Q 018662 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK 155 (352)
Q Consensus 106 ~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 155 (352)
|.+..+++ +..+++|++|++++|.+..++.. +..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998875 88899999999999999887653 3346777777777776543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4.7e-14 Score=114.65 Aligned_cols=126 Identities=24% Similarity=0.339 Sum_probs=103.0
Q ss_pred CceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh--hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 26 l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
-+.++++++.++.+|. .++.++++|++++|.+..++.. +..+++|++|++++|.+++.. +..|..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE---PNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC---HhHcCCcccCCEEEC
Confidence 3789999999999886 5567999999999999988764 889999999999999998863 345777899999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccC-CcccccCcceEEccCCcCCC
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK 155 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 155 (352)
++|.+..++. +..+++|++|++++|.+.+..+ ....+++|++|++++|.+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9999998765 7788999999999999887643 33446777777777776654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4.9e-14 Score=114.56 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=101.3
Q ss_pred cEEEccCCccceecCCCCCCCCEEEcCCCcCCCCcC---ccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcC
Q 018662 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKL 262 (352)
Q Consensus 188 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l 262 (352)
+.++++++.+..+......+++.|++++|.++..+. +..+++|++|++++|.++++ ..+..+++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 567777776665543344588888999888887742 77889999999999999887 3578889999999999999
Q ss_pred CCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 263 TLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 263 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+++ ..+..+++|+.|++++|.++.+. ...+..+++|++|++++|+|.|++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcC
Confidence 887 44788999999999999999653 335677899999999999999988
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-13 Score=110.47 Aligned_cols=126 Identities=25% Similarity=0.373 Sum_probs=101.0
Q ss_pred CcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcCCCcC
Q 018662 187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKL 262 (352)
Q Consensus 187 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 262 (352)
.+.++++++.+........++++.|++++|.++..+ .+..+++|++|++++|.+++++. +..+++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 456777777766665555578888888888887775 36778899999999999888754 67888999999999999
Q ss_pred CCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 263 TLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 263 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
+++ ..+..+++|+.|++++|.++.++. ..+..+++|++|++++|++.|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeeccC
Confidence 887 346788999999999999987663 44567899999999999998887
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.3e-14 Score=115.37 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCcccEEEcCCCCCC--cchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCC-CCC-CccccC
Q 018662 44 FPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKK 119 (352)
Q Consensus 44 ~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~~ 119 (352)
.+++|++|++++|.+. .+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.. +|. +..+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3466666666666666 5665566666666666666666553 344556666666666666665 443 334666
Q ss_pred CcEEEccCCCccccc--CCcccccCcceEEccCCcCCCcc-----cccCCCCCcEEEcCCCcc
Q 018662 120 LSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVPKME-----EIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 120 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~l~~~~l 175 (352)
|++|++++|.+..++ .....+++|++|++++|.+.... .+..+++|++|++.+|..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666666666665543 22233455555555555544421 244445555555544443
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=4.1e-15 Score=119.24 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=82.9
Q ss_pred CCCCCcEEEccCCcccee-cCCCC-CCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCCC--CCCCCCCcEEEcC
Q 018662 183 NLTNLQELWLGRNRIKVV-NLCGL-KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVS 258 (352)
Q Consensus 183 ~~~~L~~L~l~~~~l~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 258 (352)
.+++|+.|++++|.+... .+..+ ++|+.|++++|.++..+.+..+++|+.|++++|.++.++. +..+++|++|+++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 344444444444444433 12222 3566666666666555556667777777777777776653 3567778888888
Q ss_pred CCcCCCcc---cccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 259 SNKLTLVD---DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 259 ~n~l~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+|.++.++ .+..+++|+.|++++|+++.++......+..+++|+.|++++|+
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88777663 46677888888888888877665433445667888888888885
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.8e-14 Score=114.51 Aligned_cols=126 Identities=25% Similarity=0.251 Sum_probs=86.2
Q ss_pred CCCcEEEccCCccc--ee--cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-CCCC-CCCCCCcEEEcC
Q 018662 185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEGL-STLVNLHVLDVS 258 (352)
Q Consensus 185 ~~L~~L~l~~~~l~--~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~~~L~~L~l~ 258 (352)
++++.|++++|.+. .. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+ ++.. ..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 44555555555444 22 234455666666666666655556677777778887777776 4433 347778888888
Q ss_pred CCcCCCc---ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 259 ~n~l~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+|.++++ ..+..+++|+.|++++|.++.++......+..+++|++|++++|+
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8888775 456778888888888888887765444567778889999988884
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.8e-14 Score=110.98 Aligned_cols=104 Identities=25% Similarity=0.241 Sum_probs=47.8
Q ss_pred CCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCC-CCC-CCCCCCCcEEEcCCCcCCCc---ccccCCCCCCeEE
Q 018662 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW 278 (352)
Q Consensus 204 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~ 278 (352)
.+++|+.|++++|.++..+.+..+++|+.|++++|.+++ ++. +..+++|++|++++|+++++ ..+..+++|++|+
T Consensus 40 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred hcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 344444444444444444334444555555555555444 322 12244455555555555443 3344455555555
Q ss_pred cCCCCCcchHHHHHHHhccccCccEeecc
Q 018662 279 LNDNQIESLESIVEAVAGSRETLTTIYLE 307 (352)
Q Consensus 279 l~~n~i~~~~~~~~~~~~~~~~L~~L~l~ 307 (352)
+++|.++.++......+..+++|+.|+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555554443222333444555555443
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.1e-14 Score=128.70 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=61.9
Q ss_pred CCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCCCCCC--CCCCCCCCc-EEEcCCCcCCCc--ccccCCCCCCeE
Q 018662 205 LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLH-VLDVSSNKLTLV--DDIQNLSRLEDL 277 (352)
Q Consensus 205 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~-~L~l~~n~l~~~--~~~~~~~~L~~L 277 (352)
+++|+.+++++|.++.++ .|..|++|+.+++..| +..++ .|..+.+|+ .+++.+ .++.+ ..|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777766666654 4666777777777665 55543 366666776 777766 55554 456667777777
Q ss_pred EcCCCCCcchHHHHHHHhccccCccEee
Q 018662 278 WLNDNQIESLESIVEAVAGSRETLTTIY 305 (352)
Q Consensus 278 ~l~~n~i~~~~~~~~~~~~~~~~L~~L~ 305 (352)
++++|.++.++ ...+.+|++|+.++
T Consensus 303 ~l~~n~i~~I~---~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLG---DELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEEC---TTTTCTTCCCCEEE
T ss_pred EeCCCccCccc---hhhhcCCcchhhhc
Confidence 77777776655 34566667777665
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=6.7e-14 Score=123.73 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=80.2
Q ss_pred CCCCCcEEEccCCcccee---cCCCCCCCCEEEcCCCcCCCCc--CccccccCc-EEECCCCCCCCCC--CCCCCCCCcE
Q 018662 183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALE-ELYLSHNGISKME--GLSTLVNLHV 254 (352)
Q Consensus 183 ~~~~L~~L~l~~~~l~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~-~L~l~~n~l~~~~--~~~~~~~L~~ 254 (352)
.+++|+.+++.+|.+... .|..+.+|+.+++.++ ++.++ .|..|++|+ .+++.. .++.++ .|..+++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 378999999999877776 7888999999999987 66554 588999999 999988 677664 5889999999
Q ss_pred EEcCCCcCCCc--ccccCCCCCCeEEc
Q 018662 255 LDVSSNKLTLV--DDIQNLSRLEDLWL 279 (352)
Q Consensus 255 L~l~~n~l~~~--~~~~~~~~L~~L~l 279 (352)
+++++|.++.+ ..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888 57889999998874
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.5e-14 Score=114.63 Aligned_cols=129 Identities=22% Similarity=0.307 Sum_probs=84.0
Q ss_pred cccccCceeecCCCCCcCCCCCCCC-CcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCc
Q 018662 21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (352)
Q Consensus 21 ~~~~~l~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 99 (352)
..+.++++|+++++.++.++.+... ++|++|++++|.++.+ ..+..+++|++|++++|.++... ...+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG---EGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC---SCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC---cchhhcCCCCC
Confidence 3456677777777777777654433 3777777777777766 45677777777777777776531 12235677777
Q ss_pred EEEccCCCCCCCCC---CccccCCcEEEccCCCcccccCC----cccccCcceEEccCCcC
Q 018662 100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGL----SNVTDTLKELYVSKNEV 153 (352)
Q Consensus 100 ~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 153 (352)
+|++++|.+..+|. +..+++|+.|++++|++...+.. ...+++|+.|+++.|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777777776654 55667777777777777655442 33456666666655543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.1e-15 Score=142.50 Aligned_cols=189 Identities=19% Similarity=0.234 Sum_probs=136.6
Q ss_pred CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCc-------------cCccccccccccccCCCCcEEE-ccCCCC
Q 018662 43 EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-------------IDDAAIEPISRWDALAGLEELI-LRDNKL 108 (352)
Q Consensus 43 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~l~~L~~L~-l~~~~l 108 (352)
...++|+.|++++|+++.+|..+.++++|++|+++++. ..+. .+..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~---~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC---CHHHHHHHHhcccCcchhhccc
Confidence 44678999999999999999999999999999987764 2221 223445566677776 444433
Q ss_pred CCCCC-------Ccc--ccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEcCCCccCCc
Q 018662 109 MKIPD-------VSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM 178 (352)
Q Consensus 109 ~~l~~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~ 178 (352)
..++. +.. ...|+.|++++|.+.+++. ...+++|+.|++++|.+..+ ..++.+++|+.|++++|.++.+
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 22211 111 1257888888888887765 55577888888888887774 5678888888888888888777
Q ss_pred ccccCCCCCcEEEccCCcccee----cCCCCCCCCEEEcCCCcCCCCcC-----ccccccCcEEEC
Q 018662 179 ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYL 235 (352)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l 235 (352)
+.++.+++|+.|++++|.+... .+..+++|+.|++++|.+++.+. +..+|+|+.|++
T Consensus 502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7788888888888888877655 46678889999999988877643 224788888764
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.1e-14 Score=111.72 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=52.9
Q ss_pred ccCceeecCCCCCc--CCCCC-CCCCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcE
Q 018662 24 LSNTVLDLTSFQLH--DLDSV-EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (352)
Q Consensus 24 ~~l~~L~l~~~~l~--~~~~~-~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 100 (352)
+++++|+++++.++ .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+++.. +..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL---EVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCT---HHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchH---HHHhhhCCCCCE
Confidence 44555555555555 33332 3345555555555555544 34455555555555555555421 112233555555
Q ss_pred EEccCCCCCCCC---CCccccCCcEEEccCCCccccc
Q 018662 101 LILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSH 134 (352)
Q Consensus 101 L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~ 134 (352)
|++++|.+..++ .+..+++|++|++++|.+.+.+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 555555555432 1444555555555555554443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=3.5e-13 Score=107.97 Aligned_cols=127 Identities=28% Similarity=0.381 Sum_probs=102.6
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
+.+.+++++++++.++. ..++++++|++++|+++.++.. +..+++|++|++++|.++... ...+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---DGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC---hhHccCCCccCEEEC
Confidence 45788999999998874 5668999999999999988765 688999999999999988752 234567899999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccccCCc-ccccCcceEEccCCcCCC
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPK 155 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 155 (352)
++|.+..++. +..+++|++|++++|.+..++... ..+++|++|++++|.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999998776 677899999999999888776543 346778888888777654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=3.8e-12 Score=115.20 Aligned_cols=247 Identities=13% Similarity=0.196 Sum_probs=161.7
Q ss_pred CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCc
Q 018662 45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLS 121 (352)
Q Consensus 45 ~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~ 121 (352)
+..++.+.+.+ +++.|+.. |.++ +|+.+.+..+ ++.+. ...|.. .+|+.+.+.. .+..++. +..+++|+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~---~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIG---DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEEC---TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEEC---HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 35566666654 35556553 6664 6888888765 44432 234544 3688888875 5665554 77788888
Q ss_pred EEEccCCCcccccCCcccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCCCccCCc--ccccCCCCCcEEEccCCcc
Q 018662 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~~~l 197 (352)
.+++..|.+..++...+.+.+|+.+.+..+ +..+ .++..+++|+.+.+..+ +..+ .++.+ .+|+.+.+.. .+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 888888887777665555678888888644 3332 45777888888888764 3211 23444 5788888743 33
Q ss_pred cee---cCCCCCCCCEEEcCCCcCC-----CC--cCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc
Q 018662 198 KVV---NLCGLKCIKKISLQSNRLT-----SM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV 265 (352)
Q Consensus 198 ~~~---~~~~~~~L~~L~l~~~~~~-----~~--~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~ 265 (352)
... .|..|++|+.+.+.++... .+ ..|..|++|+.+.+.. .+..+. .|..+.+|+.+.+..+ ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 333 7778888888888776554 22 2577888888888873 466553 4777788888888544 5555
Q ss_pred --ccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc-CccEeeccCC
Q 018662 266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENN 309 (352)
Q Consensus 266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~-~L~~L~l~~n 309 (352)
..|..+ +|+.+++.+|.+..++ ...+..++ +++.|++..+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~---~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVF---EKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCC---CSSCCCSCTTCCEEEECGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccc---cccccCCCCCccEEEeCHH
Confidence 567777 8888888888777654 23445553 5677776665
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=2.5e-11 Score=109.81 Aligned_cols=255 Identities=11% Similarity=0.161 Sum_probs=177.3
Q ss_pred cccccccCceeecCCCCCcCCCCCCC-CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCC
Q 018662 19 AVEIDLSNTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (352)
Q Consensus 19 ~~~~~~~l~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 96 (352)
++.....++.+.+.+ .++.++...| -.+|+.+.+..+ ++.++.. |.++ +|+.+.+.. .++.+ ....|..++
T Consensus 108 ~~~~~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~ 180 (401)
T 4fdw_A 108 LTEILKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCY 180 (401)
T ss_dssp EEEECSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE---CSSTTTTCT
T ss_pred EEEecCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe---hHHHhhCcc
Confidence 344445666666654 3555543332 247888888766 7777664 6664 689998886 45544 234677888
Q ss_pred CCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCC-cccccCcceEEccCCcCCCc--ccccCCCCCcEEEcCC
Q 018662 97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGS 172 (352)
Q Consensus 97 ~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~ 172 (352)
+|+.+++..+.+..++. .....+|+.+.+..+ +..+... +..+.+|+.+.+..+ +..+ .++.. .+|+.+.+..
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC
Confidence 99999998888888776 333678888888744 5555443 334778999988764 3332 33555 6788888854
Q ss_pred CccCC--cccccCCCCCcEEEccCCccc--------eecCCCCCCCCEEEcCCCcCCCCc--CccccccCcEEECCCCCC
Q 018662 173 NRLRV--MENLQNLTNLQELWLGRNRIK--------VVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (352)
Q Consensus 173 ~~l~~--~~~~~~~~~L~~L~l~~~~l~--------~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l 240 (352)
.+.. ...+.+|++|+.+.+.++.+. ...|..|++|+.+.+.. .++.++ .|..|++|+.+.+..+ +
T Consensus 258 -~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 258 -GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp -TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred -CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 3432 345788999999999877643 22788899999999984 465553 6888999999999654 6
Q ss_pred CCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCC-CCCCeEEcCCCCCcch
Q 018662 241 SKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIESL 287 (352)
Q Consensus 241 ~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~-~~L~~L~l~~n~i~~~ 287 (352)
+.+. .|..+ +|+.+.+.+|....+ ..+..+ ..++.+.+-.+.+...
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHh
Confidence 6553 57778 999999999988766 456666 4788999988775543
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.9e-12 Score=101.86 Aligned_cols=105 Identities=28% Similarity=0.362 Sum_probs=89.9
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
+.+.++++++.++.+|. .+++++++|++++|.+++++ ..|.++++|++|++++|.++... ...|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP---AGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC---hhhccCCCCCCEEEC
Confidence 46789999999999886 45799999999999999885 45899999999999999998753 334677899999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSS 133 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~ 133 (352)
++|.+..++. +..+++|++|++++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999998876 77899999999999988654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3.8e-12 Score=101.14 Aligned_cols=106 Identities=30% Similarity=0.389 Sum_probs=84.2
Q ss_pred CCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCC
Q 018662 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDN 282 (352)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n 282 (352)
..+.++++++.++.+|.- -.+.++.|++++|.+++++ .+..+++|++|++++|+++++ ..+..+++|++|++++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 457788888888877632 2478888999999888874 377888899999999998887 34678889999999999
Q ss_pred CCcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 283 QIESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
.|+.++. ..+..+++|++|++++|++.|.+.
T Consensus 89 ~l~~~~~---~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPR---GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCT---TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCH---HHhcCCCCCCEEEeCCCCCCCCch
Confidence 9987663 446778899999999999988873
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=5.2e-12 Score=100.75 Aligned_cols=106 Identities=27% Similarity=0.405 Sum_probs=90.0
Q ss_pred cCceeecCCCCCcCCCCCCCCCcccEEEcCCCCCCcch-hhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
..+.++++++.++.+|. .++++|++|++++|.+++++ ..|.++++|++|++++|.++.. +...|..+++|++|++
T Consensus 13 ~~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI---PTGVFDKLTQLTQLDL 88 (174)
T ss_dssp CSSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc---ChhHhCCcchhhEEEC
Confidence 34789999999999886 55699999999999999885 4588999999999999999885 2234567899999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCccccc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH 134 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~ 134 (352)
++|.+..++. +..+++|++|++++|++....
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999998886 778999999999999887543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.2e-11 Score=98.71 Aligned_cols=105 Identities=34% Similarity=0.423 Sum_probs=79.7
Q ss_pred CCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC
Q 018662 208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ 283 (352)
Q Consensus 208 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~ 283 (352)
-+.++++++.++.+|.- -.+.|+.|++++|++.+++ .+..+++|++|++++|+++++ ..+..+++|+.|++++|.
T Consensus 14 ~~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 36777777777777641 1377888888888888763 367788888888888888887 335778888888888888
Q ss_pred CcchHHHHHHHhccccCccEeeccCCCcccccc
Q 018662 284 IESLESIVEAVAGSRETLTTIYLENNPQNLQII 316 (352)
Q Consensus 284 i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 316 (352)
|+.++. ..+..+++|++|++++|++.|.+.
T Consensus 93 l~~l~~---~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPR---GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCT---TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCH---HHhccccCCCEEEeCCCCcccccc
Confidence 887663 346677888888888888888773
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=7.8e-11 Score=106.65 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=54.1
Q ss_pred cCCCCCCCCEEEcCCCcCCCCcCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCe
Q 018662 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLED 276 (352)
Q Consensus 201 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~ 276 (352)
.+..+..++.+......+.. ..+..+.+|+.+.+..+ ++.+. .+..+.+|+.+++..+ ++.+ ..|.+|.+|+.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 34444444444443322111 13445566666666443 33332 3556666777776533 4444 45666677777
Q ss_pred EEcCCCCCcchHHHHHHHhccccCccEeeccCC
Q 018662 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (352)
Q Consensus 277 L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n 309 (352)
+.+..+ ++.++ ..++..|++|+.+++..+
T Consensus 348 i~lp~~-l~~I~---~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 348 INFPLS-LRKIG---ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEEC---TTTBTTCTTCCEEEEEGG
T ss_pred EEECcc-ccEeh---HHHhhCCCCCCEEEECCC
Confidence 777655 55443 335666777777766543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=1.2e-11 Score=120.52 Aligned_cols=107 Identities=22% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCcccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (352)
Q Consensus 45 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L 123 (352)
++.|++|+|++|.+..+|..+.++++|++|+|++|.++. .+..+..+++|++|+|++|.+..+|. +..+++|++|
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE----LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC----CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc----cChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 466777777777777777666677777777777777663 22345667777777777777777765 6667777777
Q ss_pred EccCCCcccccCCcccccCcceEEccCCcCCC
Q 018662 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (352)
++++|.+..++..+..+++|+.|++++|.+..
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 77777776666555556777777777777664
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=6.4e-14 Score=114.47 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=84.8
Q ss_pred cccEEEcCCC--CCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcEE
Q 018662 47 NLTELDLTAN--RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (352)
Q Consensus 47 ~L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L 123 (352)
.++...+.+. .++.+|..+..+++|++|++++|.++.. +.+..+++|++|++++|.+..+|. +..+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-----~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-----CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-----cccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 4555555554 5556666788888888888888887763 156667888888888888877776 4556778888
Q ss_pred EccCCCcccccCCcccccCcceEEccCCcCCCcc---cccCCCCCcEEEcCCCcc
Q 018662 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME---EIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l 175 (352)
++++|.+.+++ ....+++|++|++++|.+.... .+..+++|+++++.+|.+
T Consensus 99 ~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88888777654 2334667777777777766532 356666666666666655
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=8.8e-12 Score=121.35 Aligned_cols=149 Identities=21% Similarity=0.181 Sum_probs=94.0
Q ss_pred ccCceeecCCCCCcCCCCCC-CCCc-----ccEEEcCCCCCCcchhhhhcCCCCcEEeccCCccCccccccccccccCCC
Q 018662 24 LSNTVLDLTSFQLHDLDSVE-FPTN-----LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (352)
Q Consensus 24 ~~l~~L~l~~~~l~~~~~~~-~~~~-----L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 97 (352)
+.++.|++.++.+...+... .... +..+++..+.+...+..+..++.|+.|+|++|.+..+ ...+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l----~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI----SANIFKYDF 248 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCC----CGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC----ChhhcCCCC
Confidence 45788888888887754311 1122 3333333444444455688999999999999998863 234457899
Q ss_pred CcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCc-ccccCCCCCcEEEcCCCcc
Q 018662 98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 98 L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~l 175 (352)
|++|+|++|.+..+|. +..+++|++|++++|.+..++..+..+.+|++|++++|.+..+ ..++.+++|++|++++|.+
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 9999999999999987 8899999999999999998877777789999999999998874 4589999999999999988
Q ss_pred C
Q 018662 176 R 176 (352)
Q Consensus 176 ~ 176 (352)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 6
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.9e-13 Score=110.59 Aligned_cols=106 Identities=28% Similarity=0.459 Sum_probs=49.7
Q ss_pred cccCCCCcEEEccCCCCCCCCCCccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCcccccCCCCCcEEEcC
Q 018662 92 WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFG 171 (352)
Q Consensus 92 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 171 (352)
+..+++|++|++++|.+..+|.+..+++|++|++++|.+..++.....+++|++|++++|.+..++.+..+++|+.|+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 33444555555555544444444444555555555554444433333334455555555544444444444455555555
Q ss_pred CCccCCcc---cccCCCCCcEEEccCCcc
Q 018662 172 SNRLRVME---NLQNLTNLQELWLGRNRI 197 (352)
Q Consensus 172 ~~~l~~~~---~~~~~~~L~~L~l~~~~l 197 (352)
+|.+...+ .+..+++|+.+++++|.+
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 55444321 244444555555555443
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=2.9e-10 Score=102.93 Aligned_cols=276 Identities=15% Similarity=0.173 Sum_probs=178.7
Q ss_pred ccccccccccCceeecCCCCCcCCCCCCC--CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccc-------
Q 018662 16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAA------- 85 (352)
Q Consensus 16 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~------- 85 (352)
.+.+|..+.+|+.+.+.. .++.++...| |++|+.+++..+ ++.++.. |.+++.|+.+.+..+- ....
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecc
Confidence 466788888899999974 4777765444 688999999754 6666654 7788888877665331 1000
Q ss_pred -------c-----ccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCC-cccccCcceEEccC
Q 018662 86 -------I-----EPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSK 150 (352)
Q Consensus 86 -------~-----~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 150 (352)
+ .....|..+++|+.+.+..+ +..++. +..+.+|+.+.+..+ +..+... +..+..|+.+.+..
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 0 01234677888999988654 233433 666777777777554 2222211 11233444433322
Q ss_pred CcC---------------------CC--cccccCCCCCcEEEcCCCccC-CcccccCCCCCcEEEccCCccceecCCCCC
Q 018662 151 NEV---------------------PK--MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVVNLCGLK 206 (352)
Q Consensus 151 ~~~---------------------~~--~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 206 (352)
+.. .. ...+..+..++.+.+..+... ....+..+..++.+......+....+..+.
T Consensus 218 ~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 218 SLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp TCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred CceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence 211 11 123455666777777655433 223466777788877776666555788899
Q ss_pred CCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcC
Q 018662 207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLN 280 (352)
Q Consensus 207 ~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~ 280 (352)
+|+.+.+..+ ++.+ ..+..|.+|+.+++..+ ++.+. .|..+.+|+.+.+..+ ++.+ ..+..|++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 9999999765 4444 35888999999999754 66553 5888999999999876 6665 678999999999997
Q ss_pred CCCCcchHHHHHHHhccccCccEe
Q 018662 281 DNQIESLESIVEAVAGSRETLTTI 304 (352)
Q Consensus 281 ~n~i~~~~~~~~~~~~~~~~L~~L 304 (352)
.+ ++.+. ..+.+|++|+.+
T Consensus 375 ~~-~~~~~----~~F~~c~~L~~I 393 (394)
T 4fs7_A 375 KR-LEQYR----YDFEDTTKFKWI 393 (394)
T ss_dssp GG-GGGGG----GGBCTTCEEEEE
T ss_pred CC-CEEhh----heecCCCCCcEE
Confidence 55 33332 357888888875
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=8.1e-09 Score=93.35 Aligned_cols=273 Identities=12% Similarity=0.219 Sum_probs=142.6
Q ss_pred cCceeecCCCCCcCCCCCC--CCCcccEEEcCCC---CCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCC
Q 018662 25 SNTVLDLTSFQLHDLDSVE--FPTNLTELDLTAN---RLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (352)
Q Consensus 25 ~l~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~---~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 98 (352)
.|+.+.+... ++.+..-. -|++|+.+.+..+ .++.+... |..|.+|+.+.+..+ ++.+ ....|..+.+|
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I---~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI---DSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE---CTTTTTTCTTC
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee---hhhhhhhhccc
Confidence 3555555432 44443322 2456666666543 24455432 556666666555443 2222 12345556666
Q ss_pred cEEEccCCCCCCCCC--CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCC-CcccccCCCCCcEEEcCCCcc
Q 018662 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP-KMEEIEHFHDLQILEFGSNRL 175 (352)
Q Consensus 99 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~l 175 (352)
+.+.+... +..++. +..+..|+.+.+..+ +..+....+....|+.+.+..+... ....+..+..+..........
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence 66666532 232332 555666666666543 3333333333455666665443211 123355555666555544322
Q ss_pred CCccc---------------ccCCCCCcEEEccCCc--cceecCCCCCCCCEEEcCCCcCC-CCcCccccccCcEEECCC
Q 018662 176 RVMEN---------------LQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSH 237 (352)
Q Consensus 176 ~~~~~---------------~~~~~~L~~L~l~~~~--l~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~ 237 (352)
..... ......+..+.+...- +....+..+..|+.+.+...... +...+..++.|+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS- 296 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-
T ss_pred ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-
Confidence 11110 1112223333332211 11115667777888877654221 11346677788888775
Q ss_pred CCCCCCC--CCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCC
Q 018662 238 NGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 238 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+.+..++ .|..+.+|+.+.+..+ ++.+ ..|..|.+|+.+.+-.+ ++.++ ..++.+|++|+.+++.++.
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~---~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP---ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC---GGGGTTCTTCCEEEESSCH
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh---HhHhhCCCCCCEEEECCce
Confidence 3454443 4667778888888653 5444 56777888888888544 55554 3457778888888887763
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.07 E-value=1.7e-11 Score=109.87 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=110.1
Q ss_pred ccCcceEEccCCcCCCcc--c----cc-CCCCCcEEEcCCCccCCc--cc-ccCCCCCcEEEccCCcccee---c----C
Q 018662 140 TDTLKELYVSKNEVPKME--E----IE-HFHDLQILEFGSNRLRVM--EN-LQNLTNLQELWLGRNRIKVV---N----L 202 (352)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~--~----~~-~~~~L~~L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~l~~~---~----~ 202 (352)
.+.|++|++++|.+.... . +. ..++|++|++++|.+... .. ...+++|+.|++++|.+... . +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 568899999999877621 1 22 336899999999887521 12 23345788999999887654 1 1
Q ss_pred -CCCCCCCEEEcCCCcCCCCc------CccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc----
Q 018662 203 -CGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV---- 265 (352)
Q Consensus 203 -~~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~---- 265 (352)
...++|++|++++|.++... .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 34678889999888876531 235678888888888887652 2345566788888888888754
Q ss_pred --ccccCCCCCCeEEcCCCCCcchHHHHHHHhcccc--CccEee--ccCCCc
Q 018662 266 --DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE--TLTTIY--LENNPQ 311 (352)
Q Consensus 266 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~--~L~~L~--l~~n~~ 311 (352)
..+...++|++|++++|.|++............. .|+.+. +.++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 2344567888888888888864321111112112 166666 566644
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=6.5e-10 Score=98.76 Aligned_cols=103 Identities=24% Similarity=0.210 Sum_probs=85.9
Q ss_pred ceeecCCC-CCcCCCCCCCCCcccEEEcCC-CCCCcchh-hhhcCCCCcEEeccCCccCccccccccccccCCCCcEEEc
Q 018662 27 TVLDLTSF-QLHDLDSVEFPTNLTELDLTA-NRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (352)
Q Consensus 27 ~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 103 (352)
..++++++ .++.+|.+...++|++|+|++ |.++.++. .|.++++|++|+|++|.+++.. ...|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC---HHHhcCCcCCCEEeC
Confidence 46788888 899998855667899999996 99998875 5899999999999999999863 345778999999999
Q ss_pred cCCCCCCCCC--CccccCCcEEEccCCCcccc
Q 018662 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSS 133 (352)
Q Consensus 104 ~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~ 133 (352)
++|.+..+|. +..++ |+.|++.+|.+...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999999886 44444 99999999988753
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=2.6e-11 Score=108.58 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=83.3
Q ss_pred ccCCcEEEccCCCcccccC-----Ccc-cccCcceEEccCCcCCCc--cc-ccCCCCCcEEEcCCCccCCc--cc----c
Q 018662 117 FKKLSVFDVSFNEITSSHG-----LSN-VTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRLRVM--EN----L 181 (352)
Q Consensus 117 ~~~L~~L~l~~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~l~~~--~~----~ 181 (352)
.+.|+.|++++|.+..... ... ...+|++|++++|.+... .. ...+++|++|++++|.+... .. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456777777776654211 111 124677777777766541 11 12344667777777766421 11 1
Q ss_pred -cCCCCCcEEEccCCcccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC----
Q 018662 182 -QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM---- 243 (352)
Q Consensus 182 -~~~~~L~~L~l~~~~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~---- 243 (352)
...+.|++|++++|.+... .+...++|++|++++|.+... ..+..+++|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356677777777766543 224566677777777766543 1244556677777777766542
Q ss_pred --CCCCCCCCCcEEEcCCCcCCCc
Q 018662 244 --EGLSTLVNLHVLDVSSNKLTLV 265 (352)
Q Consensus 244 --~~~~~~~~L~~L~l~~n~l~~~ 265 (352)
..+...++|++|++++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 1233445677777777776543
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=3e-08 Score=89.59 Aligned_cols=280 Identities=12% Similarity=0.199 Sum_probs=175.9
Q ss_pred CccccccccccCceeecCCCC---CcCCCCCC--CCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCcccccc
Q 018662 15 NPDQAVEIDLSNTVLDLTSFQ---LHDLDSVE--FPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEP 88 (352)
Q Consensus 15 ~~~~~~~~~~~l~~L~l~~~~---l~~~~~~~--~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 88 (352)
..+.+|.-+.+|+.+.+..+. ++.+.... .+..|+.+.+..+ +..++.. |..+.+|+.+.+... +... .
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I---~ 152 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSV---A 152 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEE---C
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeee---c
Confidence 456777888899999887653 55554433 3677888777654 5666654 789999999999764 2222 2
Q ss_pred ccccccCCCCcEEEccCCCCCCCCC-CccccCCcEEEccCCCcccccCCcccccCcceEEccCCcCCCccc---------
Q 018662 89 ISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--------- 158 (352)
Q Consensus 89 ~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 158 (352)
-..|..+..|+.+.+..+ +..+.. .....+|+.+.+..+-..-....+..+..+...............
T Consensus 153 ~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS
T ss_pred ccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeecccccc
Confidence 245677899999998754 444443 223456888887654322222233345666666555433222111
Q ss_pred ------ccCCCCCcEEEcCCCccC--CcccccCCCCCcEEEccCCcc--ceecCCCCCCCCEEEcCCCcCCCCc--Cccc
Q 018662 159 ------IEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRI--KVVNLCGLKCIKKISLQSNRLTSMK--GFEE 226 (352)
Q Consensus 159 ------~~~~~~L~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~ 226 (352)
......+..+.+... +. ...++..|..|+.+.+..... ....+..+.+|+.+.+.. .++.++ .|..
T Consensus 232 ~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~ 309 (394)
T 4gt6_A 232 DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAG 309 (394)
T ss_dssp CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecC
Confidence 112223344444322 21 224577889999999876533 223788899999999964 344443 5888
Q ss_pred cccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCcc
Q 018662 227 CIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302 (352)
Q Consensus 227 ~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~ 302 (352)
|.+|+.+.+..+ ++.+ ..|..+.+|+.+.+..+ ++.+ ..|.+|++|+.+++.++... ...+..+.+|+
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~ 381 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQ 381 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC-
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee------hhhhhccCCCC
Confidence 999999999764 5555 35888999999999654 6666 67899999999999987532 13456788999
Q ss_pred EeeccCCC
Q 018662 303 TIYLENNP 310 (352)
Q Consensus 303 ~L~l~~n~ 310 (352)
.+.+..+.
T Consensus 382 ~i~i~~~~ 389 (394)
T 4gt6_A 382 NLPVAPGS 389 (394)
T ss_dssp --------
T ss_pred EEEeCCCC
Confidence 99887763
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=9.8e-10 Score=97.59 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=88.3
Q ss_pred cEEEcCCC-CCCcchhhhhcCCCCcEEeccC-CccCccccccccccccCCCCcEEEccCCCCCCCCC--CccccCCcEEE
Q 018662 49 TELDLTAN-RLTSLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124 (352)
Q Consensus 49 ~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~ 124 (352)
..++++++ +++++|. +..+++|++|+|++ |.++.. ....|..+++|++|+|++|.+.++++ +..+++|++|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 45789998 8999999 99999999999996 999886 33467889999999999999998775 78899999999
Q ss_pred ccCCCcccccCCcccccCcceEEccCCcCCC
Q 018662 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155 (352)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (352)
+++|.+..+++.......|+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999887655444459999999998765
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.77 E-value=1.6e-06 Score=77.75 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=88.5
Q ss_pred ccCCCCCcEEEccCCc--cceecCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCCCCCCCcE
Q 018662 181 LQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHV 254 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~--l~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~ 254 (352)
+..+..++.+.+..+. +....+..+..|+.+.+..+ ++.+ ..+..+..|+.+.+..+ +..+ ..+..+.+|+.
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 4556667777665432 11125667778888887654 3333 24667788888887543 4443 24677888888
Q ss_pred EEcCCCcCCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662 255 LDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325 (352)
Q Consensus 255 L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 325 (352)
+.+.++.++.+ ..+.+|.+|+.+.+..+ ++.++ ..++.+|.+|+.+.+..+ +..+....|.+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---~~aF~~C~~L~~i~ip~~-----v~~I~~~aF~~ 354 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ---VYAFKNCKALSTISYPKS-----ITLIESGAFEG 354 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC---TTTTTTCTTCCCCCCCTT-----CCEECTTTTTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH---HHHhhCCCCCCEEEECCc-----cCEEchhHhhC
Confidence 88888877766 56788888998888654 66554 346778888888887543 44556666653
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=9.1e-07 Score=79.33 Aligned_cols=262 Identities=18% Similarity=0.193 Sum_probs=162.9
Q ss_pred CCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCC-CccccCCcE
Q 018662 45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV 122 (352)
Q Consensus 45 ~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~ 122 (352)
..+|+.+.+.. .+++|+.. |.+|.+|+.+.+..+ ++.+ .-..|..+ +|+.+.+..+ +..++. .....+|+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCce-eeEeccceeccCCccc
Confidence 35677777764 46677654 888888888888754 4443 22345555 5777766543 444443 122346888
Q ss_pred EEccCCCcccccCCcccccCcceEEccCCcC-CCcccccCCCCCcEEEcCCCccC--------------CcccccCCCCC
Q 018662 123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEV-PKMEEIEHFHDLQILEFGSNRLR--------------VMENLQNLTNL 187 (352)
Q Consensus 123 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~l~--------------~~~~~~~~~~L 187 (352)
+.+..+ +..+........+++.+.+..+.. -....+..+..++.+.+...... ....+..+..+
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred ccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 877654 233333233333555555443211 11234556667777666543221 11123444555
Q ss_pred cEEEccCCccc--eecCCCCCCCCEEEcCCCcCCCC--cCccccccCcEEECCCCCCCCC--CCCCCCCCCcEEEcCCCc
Q 018662 188 QELWLGRNRIK--VVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK 261 (352)
Q Consensus 188 ~~L~l~~~~l~--~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~ 261 (352)
..+.+...... ...+..+.+++.+.+..+ +... ..+..+..|+.+.+..+ ++.+ ..+..+.+|+.+.+..+
T Consensus 197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 56555443222 225667788999888654 2222 35778899999998765 5544 34677889999999653
Q ss_pred CCCc--ccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccccccCCccHHH
Q 018662 262 LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQIILLPSDKFSQ 325 (352)
Q Consensus 262 l~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 325 (352)
++.+ ..+..|++|+.+.+.++.++.++ ...+..|.+|+.+.+..+ +..++...|.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~---~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~ 331 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLE---PRVFMDCVKLSSVTLPTA-----LKTIQVYAFKN 331 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEEC---TTTTTTCTTCCEEECCTT-----CCEECTTTTTT
T ss_pred ceeccccccccccccccccccccccceeh---hhhhcCCCCCCEEEcCcc-----ccEEHHHHhhC
Confidence 5544 57889999999999999988776 457889999999999653 56668888875
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=3.5e-08 Score=87.70 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=79.7
Q ss_pred cCCCCCcEEEcCCCc-cCCcccccCCCCCcEEEccCCcccee-----cCCCCCCCCEEEcCC--CcCC------CC-cCc
Q 018662 160 EHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS--NRLT------SM-KGF 224 (352)
Q Consensus 160 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~L~~L~l~~--~~~~------~~-~~~ 224 (352)
..+|+|+.|.+.++. +.. +.+ ..++|++|++..+.+... ....+++|+.|+++. +... .+ +.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSI-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBC-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCcee-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 445666666665542 221 122 256677777766665443 123567777777642 1111 11 111
Q ss_pred --cccccCcEEECCCCCCCC-----CCCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHHHH
Q 018662 225 --EECIALEELYLSHNGISK-----MEGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIV 291 (352)
Q Consensus 225 --~~~~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~ 291 (352)
..+|+|+.|++.+|.+.+ +.....+++|++|+++.|.+++. ..+..+++|+.|++++|.|++ +..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d--~~~ 324 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD--EMK 324 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH--HHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH--HHH
Confidence 246778888887776653 11123467788888888777653 233456778888888887774 322
Q ss_pred HHHhccccCccEeeccCCC
Q 018662 292 EAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 292 ~~~~~~~~~L~~L~l~~n~ 310 (352)
..+...+ ...++++++.
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 3222111 3557777764
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=1.5e-07 Score=83.66 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=89.5
Q ss_pred ccCCCCCcEEEccCCccceecCCCCCCCCEEEcCCCcCCCCc--Cc--cccccCcEEECCC--CC------CCCCC-CC-
Q 018662 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GF--EECIALEELYLSH--NG------ISKME-GL- 246 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~--~~~~~L~~L~l~~--n~------l~~~~-~~- 246 (352)
+..+|+|+.|.++++.-........++|+.|.+..+.+.... .+ ..+|+|++|+++. +. +..+. .+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred HhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 467789999999887311221123789999999988775432 22 3689999999853 21 11121 12
Q ss_pred -CCCCCCcEEEcCCCcCCCc-----ccccCCCCCCeEEcCCCCCcchHH-HHHHHhccccCccEeeccCCCcc
Q 018662 247 -STLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLES-IVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 247 -~~~~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
..+++|++|++.+|.+.+. .....+++|+.|+++.|.+++... .+......+++|++|++++|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3578999999999998642 112467899999999999986321 11111245799999999999654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.6e-08 Score=79.10 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=74.4
Q ss_pred CCCCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc---
Q 018662 202 LCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--- 265 (352)
Q Consensus 202 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~--- 265 (352)
+...+.|++|++++| .+... ..+...+.|++|++++|.+.+- ..+...++|++|++++|.+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344566666666666 55432 1234566777777777777641 1234556788888888888753
Q ss_pred ---ccccCCCCCCeEEc--CCCCCcchH-HHHHHHhccccCccEeeccCCCcc
Q 018662 266 ---DDIQNLSRLEDLWL--NDNQIESLE-SIVEAVAGSRETLTTIYLENNPQN 312 (352)
Q Consensus 266 ---~~~~~~~~L~~L~l--~~n~i~~~~-~~~~~~~~~~~~L~~L~l~~n~~~ 312 (352)
..+...++|++|++ ++|.|++-. ..+...+..+++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 45667788999999 889988632 123445566789999999999643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=3.3e-07 Score=77.40 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=50.4
Q ss_pred ccccCcEEECCCCCCCCCCCCC----CCCCCcEEEcCCCcCCCcccccCCC--CCCeEEcCCCCCcc----hHHHHHHHh
Q 018662 226 ECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIES----LESIVEAVA 295 (352)
Q Consensus 226 ~~~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~i~~----~~~~~~~~~ 295 (352)
.++.|+.|++++|.+++++.+. .+++|+.|+|++|++++++.+..+. +|++|++++|++.. .+.......
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 4667777777777777655432 5677777777777777664344343 77777777777763 223333455
Q ss_pred ccccCccEee
Q 018662 296 GSRETLTTIY 305 (352)
Q Consensus 296 ~~~~~L~~L~ 305 (352)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6667777764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=1.3e-07 Score=75.75 Aligned_cols=107 Identities=22% Similarity=0.152 Sum_probs=76.6
Q ss_pred ccCCCCCcEEEccCC-cccee-------cCCCCCCCCEEEcCCCcCCCC------cCccccccCcEEECCCCCCCCC---
Q 018662 181 LQNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM--- 243 (352)
Q Consensus 181 ~~~~~~L~~L~l~~~-~l~~~-------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~--- 243 (352)
+...+.|++|++++| .+... .+...++|++|++++|.+... ..+...+.|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566667777666 55543 345567788888888877653 1244567899999999988762
Q ss_pred ---CCCCCCCCCcEEEc--CCCcCCCc------ccccCCCCCCeEEcCCCCCcch
Q 018662 244 ---EGLSTLVNLHVLDV--SSNKLTLV------DDIQNLSRLEDLWLNDNQIESL 287 (352)
Q Consensus 244 ---~~~~~~~~L~~L~l--~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~ 287 (352)
..+...++|++|++ ++|.++.. ..+...++|++|++++|.+..-
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 34667788999999 88998764 4456678999999999998753
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.4e-06 Score=68.36 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=53.4
Q ss_pred ccCcEEECCCCCCCC--CCCCCCCCCCcEEEcCCCc-CCCc--ccccC----CCCCCeEEcCCCC-CcchHHHHHHHhcc
Q 018662 228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQN----LSRLEDLWLNDNQ-IESLESIVEAVAGS 297 (352)
Q Consensus 228 ~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~----~~~L~~L~l~~n~-i~~~~~~~~~~~~~ 297 (352)
..|+.|++++|.+++ +..+..+++|++|++++|. +++. ..+.. +++|++|++++|. |++ ..+.. +..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~-L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIA-LHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHH-GGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHH-Hhc
Confidence 457777777777654 4455677788888888875 5543 33443 2468888888875 775 33333 456
Q ss_pred ccCccEeeccCCC
Q 018662 298 RETLTTIYLENNP 310 (352)
Q Consensus 298 ~~~L~~L~l~~n~ 310 (352)
|++|++|++++++
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 7888888888887
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=1.2e-05 Score=67.73 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCCcccE--EEcCCCCCCcchhh----hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccCCCCCCCCCCcc
Q 018662 43 EFPTNLTE--LDLTANRLTSLDSR----ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI 116 (352)
Q Consensus 43 ~~~~~L~~--L~l~~~~l~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 116 (352)
...+.|.. ++++.|....++.. ..++++|++|+|++|.+++... ....+..+++|+.|+|++|.+..+..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 33445554 66677755544432 2578899999999998887421 11234578899999999998887755555
Q ss_pred cc--CCcEEEccCCCcccccC--------CcccccCcceEEc
Q 018662 117 FK--KLSVFDVSFNEITSSHG--------LSNVTDTLKELYV 148 (352)
Q Consensus 117 ~~--~L~~L~l~~~~~~~~~~--------~~~~~~~L~~L~l 148 (352)
+. +|++|++++|++....+ ....+++|+.|+-
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 55 89999999998875221 2334778887754
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=4e-06 Score=65.77 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=64.4
Q ss_pred CCCcEEEcCCCcCCCc--ccccCCCCCCeEEcCCCC-CcchHHHHHHHhcc---ccCccEeeccCCCccccccccCCccH
Q 018662 250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGS---RETLTTIYLENNPQNLQIILLPSDKF 323 (352)
Q Consensus 250 ~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~ 323 (352)
..|+.||++++.+++. ..+..+++|+.|++++|. |++ ..+..+... +++|++|++++|+ .+ .+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~---~I---TD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCG---NV---TDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCT---TC---CHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCC---cC---CHHHH
Confidence 4699999999998765 667899999999999996 775 444444332 5689999999997 44 22223
Q ss_pred HHHHHHHHHhhhhccCceeceeeeecc
Q 018662 324 SQIYSRLILMYFFRSHSVLGFSFCQDY 350 (352)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
.. +.-++++..+++++|...
T Consensus 133 ~~-------L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 133 IA-------LHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HH-------GGGCTTCCEEEEESCTTC
T ss_pred HH-------HhcCCCCCEEECCCCCCC
Confidence 32 233799999999999754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=8.1e-05 Score=55.53 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=35.3
Q ss_pred EEEcCCCcCC--CcccccCCCCCCeEEcCCCCCcchHHHHHHHhccccCccEeeccCCCccccc
Q 018662 254 VLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPQNLQI 315 (352)
Q Consensus 254 ~L~l~~n~l~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 315 (352)
.++.+++.++ .++. .-.++|+.|+|++|.|+.++. ..+..+++|+.|+|++|||.|++
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP---GLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT---TTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh---hhhhhccccCEEEecCCCeeccC
Confidence 4555555555 4421 112356777777777776652 34556677777777777777776
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00017 Score=53.80 Aligned_cols=55 Identities=35% Similarity=0.432 Sum_probs=47.8
Q ss_pred ceeecCCCCCc--CCCCCCCCCcccEEEcCCCCCCcchhh-hhcCCCCcEEeccCCccC
Q 018662 27 TVLDLTSFQLH--DLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLID 82 (352)
Q Consensus 27 ~~L~l~~~~l~--~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~ 82 (352)
..++.+++.++ .+|. .+++++++|+|++|.|+.++.. |..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 58899999998 7775 6888999999999999999876 788999999999999765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.00013 Score=58.28 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCCCCCCEEEcCCC-cCCCC------cCccccccCcEEECCCCCCCCC------CCCCCCCCCcEEEcCCCcCCCc----
Q 018662 203 CGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV---- 265 (352)
Q Consensus 203 ~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~---- 265 (352)
..-+.|+.|+++++ .+... ..+.....|+.|++++|.+.+. ..+.....|++|+|+.|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456777777664 54432 1244567788888888877652 1244557788888888888754
Q ss_pred --ccccCCCCCCeEEcCCC---CCcchH-HHHHHHhccccCccEeeccCCC
Q 018662 266 --DDIQNLSRLEDLWLNDN---QIESLE-SIVEAVAGSRETLTTIYLENNP 310 (352)
Q Consensus 266 --~~~~~~~~L~~L~l~~n---~i~~~~-~~~~~~~~~~~~L~~L~l~~n~ 310 (352)
+.+..-+.|++|++++| .+..-. ..+...+...+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44566677999999865 344321 1244556667889999998874
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00058 Score=54.48 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=64.4
Q ss_pred cccccCcEEECCCC-CCCCC------CCCCCCCCCcEEEcCCCcCCCc------ccccCCCCCCeEEcCCCCCcchHH-H
Q 018662 225 EECIALEELYLSHN-GISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLES-I 290 (352)
Q Consensus 225 ~~~~~L~~L~l~~n-~l~~~------~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~i~~~~~-~ 290 (352)
..-+.|+.|+++++ ++..- ..+.....|+.|+|++|.+.+. +.+..-+.|+.|+|++|.|++-.. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999985 77641 2456778899999999999755 345566889999999999996431 2
Q ss_pred HHHHhccccCccEeeccCC
Q 018662 291 VEAVAGSRETLTTIYLENN 309 (352)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n 309 (352)
+...+...+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3344566678999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.56 E-value=18 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=16.8
Q ss_pred hhcCCCCcEEeccCCccCccccccccccccCCCCcEEEccC
Q 018662 65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (352)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 105 (352)
|.+|..|+.+.+..+ ++.+ .-..|..+.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~I---g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLL---YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCC---CTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheE---cHHHHhccCCccEEEEcC
Confidence 555555555555543 2221 112344455555555543
Done!