Query 018663
Match_columns 352
No_of_seqs 113 out of 1567
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.2E-40 6.9E-45 311.5 28.3 312 2-321 10-333 (358)
2 PRK11453 O-acetylserine/cystei 100.0 3.8E-33 8.2E-38 259.4 26.4 280 5-319 4-290 (299)
3 PRK11272 putative DMT superfam 100.0 4.3E-33 9.3E-38 258.1 26.3 277 7-319 10-288 (292)
4 PRK11689 aromatic amino acid e 100.0 1.5E-32 3.2E-37 254.8 23.8 284 3-319 2-290 (295)
5 PRK10532 threonine and homoser 100.0 2.1E-31 4.5E-36 246.9 26.2 279 3-323 10-288 (293)
6 PRK15430 putative chlorampheni 100.0 2.4E-31 5.2E-36 246.9 22.4 280 2-319 5-288 (296)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 4.9E-31 1.1E-35 240.2 23.9 257 17-311 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 7.4E-30 1.6E-34 237.7 23.6 276 16-321 13-298 (302)
9 PF06027 DUF914: Eukaryotic pr 100.0 1.3E-27 2.9E-32 221.5 28.0 297 6-323 14-312 (334)
10 TIGR03340 phn_DUF6 phosphonate 100.0 2.4E-27 5.3E-32 218.5 24.8 274 7-313 3-280 (281)
11 PTZ00343 triose or hexose phos 100.0 7.3E-27 1.6E-31 221.3 24.9 282 5-317 49-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 9.1E-26 2E-30 205.2 21.4 249 5-291 2-255 (256)
13 COG0697 RhaT Permeases of the 99.9 5.3E-24 1.2E-28 196.1 25.8 282 2-317 4-288 (292)
14 KOG4510 Permease of the drug/m 99.9 1.8E-24 3.8E-29 187.9 5.6 290 5-319 38-328 (346)
15 COG5006 rhtA Threonine/homoser 99.9 1.3E-21 2.9E-26 169.0 20.5 276 6-322 13-288 (292)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 2.6E-21 5.6E-26 178.8 20.5 274 6-316 2-288 (290)
17 COG2962 RarD Predicted permeas 99.9 8.1E-20 1.7E-24 162.1 21.9 283 3-322 5-289 (293)
18 KOG2765 Predicted membrane pro 99.8 1.5E-19 3.2E-24 164.5 17.6 232 70-319 158-393 (416)
19 PF08449 UAA: UAA transporter 99.8 1.6E-17 3.5E-22 154.7 24.3 266 34-321 32-302 (303)
20 KOG1441 Glucose-6-phosphate/ph 99.7 4.3E-17 9.2E-22 149.7 13.3 275 19-323 31-314 (316)
21 KOG2766 Predicted membrane pro 99.7 1.8E-17 3.9E-22 143.5 8.0 270 15-315 28-298 (336)
22 KOG1443 Predicted integral mem 99.6 4.6E-14 1E-18 125.7 20.3 253 34-314 45-313 (349)
23 KOG1580 UDP-galactose transpor 99.6 6.4E-14 1.4E-18 120.2 17.1 228 72-319 86-316 (337)
24 COG2510 Predicted membrane pro 99.6 7.1E-15 1.5E-19 114.5 10.1 136 5-148 3-138 (140)
25 COG2510 Predicted membrane pro 99.6 8.6E-14 1.9E-18 108.5 14.0 136 178-316 4-139 (140)
26 KOG2234 Predicted UDP-galactos 99.6 3.2E-12 6.9E-17 117.0 25.5 300 5-321 15-327 (345)
27 PF04142 Nuc_sug_transp: Nucle 99.5 7E-13 1.5E-17 119.1 17.0 230 67-306 13-243 (244)
28 KOG1444 Nucleotide-sugar trans 99.5 1.4E-11 3.1E-16 111.2 22.7 275 18-324 25-308 (314)
29 PF00892 EamA: EamA-like trans 99.5 2.2E-13 4.7E-18 109.3 8.0 125 187-315 1-125 (126)
30 PF00892 EamA: EamA-like trans 99.4 2.5E-13 5.5E-18 109.0 7.7 124 15-148 1-125 (126)
31 KOG1581 UDP-galactose transpor 99.3 1.4E-10 3E-15 103.8 16.7 265 33-320 50-317 (327)
32 TIGR00950 2A78 Carboxylate/Ami 99.2 1.9E-10 4.2E-15 104.5 13.6 130 4-144 127-259 (260)
33 PF06800 Sugar_transport: Suga 99.2 1.6E-09 3.4E-14 97.4 18.8 222 68-313 42-268 (269)
34 KOG3912 Predicted integral mem 99.2 4E-10 8.7E-15 99.5 13.0 278 18-315 16-333 (372)
35 KOG1442 GDP-fucose transporter 99.2 1.4E-10 3.1E-15 102.0 10.2 281 22-327 45-338 (347)
36 PRK15430 putative chlorampheni 99.1 1.2E-09 2.6E-14 101.5 11.6 139 174-316 5-145 (296)
37 PF13536 EmrE: Multidrug resis 99.1 1.7E-10 3.6E-15 91.5 5.0 103 39-149 2-106 (113)
38 PF03151 TPT: Triose-phosphate 99.1 1.5E-09 3.3E-14 90.5 11.0 138 178-316 1-153 (153)
39 TIGR03340 phn_DUF6 phosphonate 99.1 2.8E-09 6.1E-14 98.2 13.7 134 179-317 3-136 (281)
40 KOG4314 Predicted carbohydrate 99.0 9.4E-10 2E-14 92.4 8.8 218 76-320 58-280 (290)
41 COG5070 VRG4 Nucleotide-sugar 99.0 1.9E-09 4.1E-14 92.3 10.6 231 73-324 70-304 (309)
42 KOG1583 UDP-N-acetylglucosamin 99.0 7.7E-09 1.7E-13 91.4 14.6 237 64-317 60-315 (330)
43 PRK10532 threonine and homoser 99.0 6E-09 1.3E-13 96.7 13.8 135 5-151 148-283 (293)
44 TIGR00688 rarD rarD protein. T 99.0 2.9E-09 6.2E-14 96.8 11.1 137 177-316 2-142 (256)
45 PRK13499 rhamnose-proton sympo 99.0 2.1E-07 4.4E-12 87.1 21.5 300 3-317 5-342 (345)
46 PRK02971 4-amino-4-deoxy-L-ara 98.9 7.8E-09 1.7E-13 83.5 10.2 122 177-319 2-125 (129)
47 PRK11272 putative DMT superfam 98.9 1.5E-08 3.4E-13 93.9 12.6 135 4-148 149-284 (292)
48 PLN00411 nodulin MtN21 family 98.8 4.3E-08 9.4E-13 93.1 13.4 138 6-152 190-331 (358)
49 PRK11689 aromatic amino acid e 98.8 3.2E-08 6.9E-13 91.9 11.7 132 5-149 156-287 (295)
50 KOG1582 UDP-galactose transpor 98.8 5.9E-08 1.3E-12 85.6 12.0 226 72-319 107-335 (367)
51 TIGR00803 nst UDP-galactose tr 98.7 3.4E-08 7.3E-13 87.9 8.1 209 97-314 4-222 (222)
52 PF13536 EmrE: Multidrug resis 98.7 2.7E-08 5.9E-13 78.8 6.4 107 212-319 3-109 (113)
53 PRK11453 O-acetylserine/cystei 98.7 3.2E-07 6.9E-12 85.4 13.1 137 5-148 143-286 (299)
54 PF05653 Mg_trans_NIPA: Magnes 98.6 9.2E-07 2E-11 82.0 15.2 229 73-318 51-294 (300)
55 PF03151 TPT: Triose-phosphate 98.6 4.3E-07 9.4E-12 75.6 11.7 134 6-146 1-150 (153)
56 TIGR00817 tpt Tpt phosphate/ph 98.6 1.8E-07 4E-12 87.0 8.6 139 4-149 144-293 (302)
57 COG4975 GlcU Putative glucose 98.6 2E-08 4.3E-13 87.5 1.2 275 5-316 2-285 (288)
58 PRK15051 4-amino-4-deoxy-L-ara 98.4 8.2E-07 1.8E-11 69.9 7.2 68 249-316 42-109 (111)
59 TIGR00776 RhaT RhaT L-rhamnose 98.4 5.4E-06 1.2E-10 76.7 12.8 129 4-148 151-287 (290)
60 COG0697 RhaT Permeases of the 98.4 6.8E-06 1.5E-10 75.3 13.1 132 4-148 153-286 (292)
61 PTZ00343 triose or hexose phos 98.3 7.5E-06 1.6E-10 77.9 13.2 138 4-148 193-347 (350)
62 PRK15051 4-amino-4-deoxy-L-ara 98.3 3.4E-06 7.3E-11 66.4 8.4 67 76-148 41-108 (111)
63 COG2962 RarD Predicted permeas 98.2 7.6E-06 1.6E-10 73.6 10.1 141 175-318 5-146 (293)
64 PRK02971 4-amino-4-deoxy-L-ara 98.2 2E-05 4.4E-10 63.6 10.6 117 5-148 2-121 (129)
65 PF06027 DUF914: Eukaryotic pr 98.2 2.7E-05 5.8E-10 73.0 12.9 142 3-152 166-308 (334)
66 KOG4510 Permease of the drug/m 98.1 3.7E-06 8.1E-11 74.3 4.7 137 174-319 35-172 (346)
67 KOG2922 Uncharacterized conser 98.0 2.3E-05 5.1E-10 71.3 8.7 227 73-317 65-307 (335)
68 COG5006 rhtA Threonine/homoser 98.0 4.5E-05 9.8E-10 67.1 10.1 134 5-149 148-282 (292)
69 PRK10452 multidrug efflux syst 98.0 1.4E-05 3.1E-10 63.4 6.0 71 249-319 35-106 (120)
70 PRK09541 emrE multidrug efflux 97.7 0.00017 3.6E-09 56.5 8.0 69 250-318 36-105 (110)
71 PF08449 UAA: UAA transporter 97.7 0.00049 1.1E-08 64.1 11.4 126 192-323 15-143 (303)
72 PF06800 Sugar_transport: Suga 97.5 0.0005 1.1E-08 62.2 9.0 115 3-126 136-250 (269)
73 PF04657 DUF606: Protein of un 97.5 0.0014 3.1E-08 53.6 10.3 132 178-313 2-138 (138)
74 PF05653 Mg_trans_NIPA: Magnes 97.4 0.0003 6.5E-09 65.3 5.8 121 173-317 3-123 (300)
75 COG2076 EmrE Membrane transpor 97.3 0.00061 1.3E-08 52.4 5.3 67 251-317 37-104 (106)
76 PRK10650 multidrug efflux syst 97.3 0.0023 5E-08 49.9 8.6 65 251-315 42-107 (109)
77 PRK13499 rhamnose-proton sympo 97.2 0.0021 4.5E-08 60.4 9.3 143 174-321 4-158 (345)
78 PRK11431 multidrug efflux syst 97.2 0.0025 5.3E-08 49.5 7.8 66 251-316 36-102 (105)
79 PF10639 UPF0546: Uncharacteri 97.0 0.0014 3.1E-08 51.2 5.5 110 11-147 2-112 (113)
80 COG3238 Uncharacterized protei 97.0 0.0079 1.7E-07 49.4 9.9 138 177-317 5-147 (150)
81 PF00893 Multi_Drug_Res: Small 97.0 0.0027 5.8E-08 48.2 6.5 57 251-307 36-93 (93)
82 KOG1441 Glucose-6-phosphate/ph 96.9 0.0019 4.1E-08 60.0 6.2 138 3-148 161-306 (316)
83 PF04142 Nuc_sug_transp: Nucle 96.9 0.0011 2.3E-08 59.8 4.4 68 254-321 27-94 (244)
84 PRK10650 multidrug efflux syst 96.9 0.0084 1.8E-07 46.8 8.8 63 79-147 43-106 (109)
85 PRK09541 emrE multidrug efflux 96.8 0.0035 7.5E-08 49.1 5.8 62 82-149 41-103 (110)
86 PRK10452 multidrug efflux syst 96.8 0.0026 5.7E-08 50.5 5.0 63 82-150 41-104 (120)
87 PF04657 DUF606: Protein of un 96.7 0.016 3.4E-07 47.4 9.7 130 7-146 3-138 (138)
88 PRK11431 multidrug efflux syst 96.6 0.0049 1.1E-07 47.8 5.5 61 82-148 40-101 (105)
89 COG2076 EmrE Membrane transpor 96.6 0.0037 8.1E-08 48.1 4.4 61 82-148 41-102 (106)
90 PF06379 RhaT: L-rhamnose-prot 96.2 0.31 6.6E-06 45.5 15.7 300 4-316 6-340 (344)
91 KOG2765 Predicted membrane pro 96.0 0.026 5.6E-07 52.9 7.8 143 2-151 244-392 (416)
92 COG4975 GlcU Putative glucose 96.0 0.0044 9.5E-08 54.6 2.6 132 178-319 3-139 (288)
93 PF07857 DUF1632: CEO family ( 95.8 0.13 2.9E-06 46.4 11.3 178 6-195 1-201 (254)
94 PF00893 Multi_Drug_Res: Small 95.8 0.019 4E-07 43.6 4.7 53 81-139 39-92 (93)
95 PF10639 UPF0546: Uncharacteri 95.5 0.049 1.1E-06 42.7 6.3 109 184-314 3-112 (113)
96 KOG2234 Predicted UDP-galactos 95.2 0.49 1.1E-05 44.2 12.8 140 177-317 15-165 (345)
97 TIGR00803 nst UDP-galactose tr 94.8 0.075 1.6E-06 47.0 6.4 64 76-145 157-220 (222)
98 KOG1581 UDP-galactose transpor 94.5 0.46 1E-05 43.5 10.4 136 4-148 171-312 (327)
99 PF07857 DUF1632: CEO family ( 94.4 0.26 5.7E-06 44.4 8.9 126 178-320 1-138 (254)
100 KOG2922 Uncharacterized conser 93.7 0.014 3E-07 53.6 -0.7 128 172-323 16-143 (335)
101 COG3238 Uncharacterized protei 93.4 0.79 1.7E-05 37.8 9.0 136 4-147 4-144 (150)
102 KOG1444 Nucleotide-sugar trans 92.5 0.8 1.7E-05 42.3 8.6 137 5-148 157-299 (314)
103 KOG4314 Predicted carbohydrate 91.5 0.1 2.2E-06 44.7 1.6 63 257-319 66-128 (290)
104 KOG1580 UDP-galactose transpor 91.0 0.38 8.2E-06 42.4 4.6 72 69-146 239-310 (337)
105 KOG1443 Predicted integral mem 90.3 4.1 8.9E-05 37.6 10.7 138 3-147 162-313 (349)
106 PF06379 RhaT: L-rhamnose-prot 89.9 1.4 3.1E-05 41.2 7.7 145 174-322 4-159 (344)
107 PF07168 Ureide_permease: Urei 86.4 0.7 1.5E-05 42.4 3.2 131 183-315 2-145 (336)
108 KOG1442 GDP-fucose transporter 83.9 2.8 6E-05 38.1 5.8 143 4-153 184-331 (347)
109 COG5070 VRG4 Nucleotide-sugar 83.8 3.3 7.2E-05 36.4 6.1 110 32-148 183-295 (309)
110 KOG4831 Unnamed protein [Funct 83.6 18 0.00039 27.8 9.6 112 8-148 6-124 (125)
111 PRK02237 hypothetical protein; 81.4 4.3 9.3E-05 31.3 5.2 46 274-319 63-108 (109)
112 PF04342 DUF486: Protein of un 81.0 1.7 3.6E-05 33.3 2.9 30 285-314 77-106 (108)
113 PF03547 Mem_trans: Membrane t 80.0 39 0.00084 32.2 12.8 16 209-224 33-48 (385)
114 KOG3912 Predicted integral mem 77.5 1.8 4E-05 39.3 2.4 65 253-317 95-159 (372)
115 COG3169 Uncharacterized protei 77.2 5 0.00011 30.3 4.3 33 284-316 83-115 (116)
116 PF08507 COPI_assoc: COPI asso 74.5 4.8 0.00011 32.6 4.1 16 299-314 88-103 (136)
117 PF02694 UPF0060: Uncharacteri 74.3 4.8 0.0001 31.0 3.6 46 274-319 61-106 (107)
118 PF05977 MFS_3: Transmembrane 73.5 49 0.0011 33.3 11.8 37 279-315 355-391 (524)
119 PF01102 Glycophorin_A: Glycop 70.1 2.7 5.9E-05 33.4 1.6 12 338-349 108-119 (122)
120 PF15102 TMEM154: TMEM154 prot 68.9 4.8 0.0001 32.9 2.7 23 302-324 67-89 (146)
121 KOG1583 UDP-N-acetylglucosamin 66.1 15 0.00032 33.6 5.5 69 256-324 76-145 (330)
122 KOG4831 Unnamed protein [Funct 64.8 17 0.00036 28.0 4.8 59 256-314 64-123 (125)
123 PRK13108 prolipoprotein diacyl 64.7 1.5E+02 0.0033 29.3 14.3 26 296-321 254-279 (460)
124 PF06570 DUF1129: Protein of u 63.3 1E+02 0.0022 26.8 11.1 55 71-125 146-203 (206)
125 PRK02237 hypothetical protein; 62.1 72 0.0016 24.7 8.1 38 106-149 68-105 (109)
126 PF07168 Ureide_permease: Urei 59.7 7.2 0.00016 35.9 2.4 131 10-146 1-143 (336)
127 KOG1582 UDP-galactose transpor 58.5 25 0.00054 32.1 5.5 110 32-148 218-331 (367)
128 PF11044 TMEMspv1-c74-12: Plec 56.3 8.6 0.00019 24.4 1.6 17 296-312 2-18 (49)
129 COG1742 Uncharacterized conser 55.9 25 0.00053 27.0 4.3 64 256-319 40-107 (109)
130 PF05297 Herpes_LMP1: Herpesvi 53.2 4.4 9.6E-05 36.8 0.0 15 172-186 102-116 (381)
131 PRK06638 NADH:ubiquinone oxido 52.9 1.5E+02 0.0033 25.6 11.9 33 285-317 133-167 (198)
132 PRK01637 hypothetical protein; 52.8 86 0.0019 28.8 8.5 19 298-316 248-266 (286)
133 PF02487 CLN3: CLN3 protein; 51.4 96 0.0021 30.1 8.8 39 105-149 68-108 (402)
134 COG3086 RseC Positive regulato 50.5 9.4 0.0002 31.1 1.5 53 266-320 70-127 (150)
135 PF06679 DUF1180: Protein of u 49.3 16 0.00034 30.7 2.7 13 335-347 137-149 (163)
136 PF06946 Phage_holin_5: Phage 48.9 66 0.0014 24.2 5.6 63 262-324 22-88 (93)
137 PF15176 LRR19-TM: Leucine-ric 48.0 31 0.00068 26.2 3.8 17 297-313 16-32 (102)
138 PF10710 DUF2512: Protein of u 46.0 1.6E+02 0.0035 23.9 8.5 37 243-279 30-67 (136)
139 PF15099 PIRT: Phosphoinositid 45.3 9.8 0.00021 30.2 0.8 16 245-260 58-73 (129)
140 PF02694 UPF0060: Uncharacteri 45.1 16 0.00035 28.1 1.9 38 106-149 66-103 (107)
141 PRK11902 ampG muropeptide tran 43.4 2.9E+02 0.0063 26.1 11.2 15 300-314 372-386 (402)
142 PRK15049 L-asparagine permease 43.4 1.9E+02 0.0042 28.8 9.9 7 120-126 244-250 (499)
143 KOG2533 Permease of the major 43.1 1.3E+02 0.0028 30.1 8.6 35 7-45 111-145 (495)
144 COG4736 CcoQ Cbb3-type cytochr 42.9 19 0.00041 24.7 1.8 21 304-324 18-38 (60)
145 TIGR02840 spore_YtaF putative 42.2 13 0.00028 32.6 1.1 43 273-315 36-80 (206)
146 PF02537 CRCB: CrcB-like prote 42.0 1.6E+02 0.0035 22.8 7.4 85 181-265 4-88 (117)
147 PF05961 Chordopox_A13L: Chord 41.4 25 0.00053 24.6 2.2 24 300-323 6-29 (68)
148 KOG4255 Uncharacterized conser 41.3 3.1E+02 0.0067 26.2 9.9 93 180-276 53-148 (439)
149 PF10101 DUF2339: Predicted me 40.5 4.6E+02 0.0099 27.5 24.5 94 20-121 18-114 (745)
150 PF13038 DUF3899: Domain of un 40.1 16 0.00034 27.3 1.2 20 297-316 3-22 (92)
151 PRK00052 prolipoprotein diacyl 39.9 2.9E+02 0.0063 25.1 11.8 22 296-317 237-258 (269)
152 PRK11010 ampG muropeptide tran 39.0 3.9E+02 0.0086 26.4 11.5 19 299-317 384-402 (491)
153 PF08693 SKG6: Transmembrane a 38.1 21 0.00046 22.3 1.3 19 302-320 21-39 (40)
154 TIGR00544 lgt prolipoprotein d 36.3 23 0.00051 32.5 1.9 25 296-320 246-270 (278)
155 KOG2766 Predicted membrane pro 35.6 46 0.00099 30.2 3.5 132 4-147 165-297 (336)
156 TIGR00881 2A0104 phosphoglycer 32.3 3.9E+02 0.0084 24.3 9.9 15 188-202 42-56 (379)
157 PF04342 DUF486: Protein of un 31.9 1.7E+02 0.0038 22.6 5.6 31 109-145 74-104 (108)
158 PF04246 RseC_MucC: Positive r 31.7 16 0.00034 29.5 0.0 21 271-291 68-88 (135)
159 TIGR00910 2A0307_GadC glutamat 31.6 5.4E+02 0.012 25.7 12.0 15 206-220 331-345 (507)
160 COG1742 Uncharacterized conser 31.5 34 0.00075 26.2 1.8 38 106-149 67-104 (109)
161 PHA03049 IMV membrane protein; 30.6 41 0.0009 23.4 1.9 22 301-322 7-28 (68)
162 PF07444 Ycf66_N: Ycf66 protei 30.5 37 0.0008 25.1 1.8 27 294-320 3-29 (84)
163 PF06609 TRI12: Fungal trichot 30.5 6.2E+02 0.013 26.1 16.0 16 302-317 542-557 (599)
164 KOG1479 Nucleoside transporter 29.3 5.4E+02 0.012 25.1 11.1 36 285-320 169-206 (406)
165 PRK10921 twin-arginine protein 27.9 71 0.0015 29.0 3.6 9 284-292 200-208 (258)
166 TIGR01167 LPXTG_anchor LPXTG-m 27.8 70 0.0015 18.6 2.4 14 297-310 11-24 (34)
167 PRK11469 hypothetical protein; 26.5 28 0.0006 30.0 0.7 40 276-315 46-86 (188)
168 KOG0847 Transcription factor, 25.8 42 0.00091 29.3 1.6 57 292-348 194-267 (288)
169 COG3169 Uncharacterized protei 25.5 53 0.0012 24.9 1.9 32 110-147 82-113 (116)
170 COG5336 Uncharacterized protei 25.3 2.1E+02 0.0046 22.2 5.1 36 281-316 56-92 (116)
171 PLN00028 nitrate transmembrane 25.1 5.5E+02 0.012 25.1 9.7 13 302-314 418-430 (476)
172 TIGR00905 2A0302 transporter, 23.8 3.5E+02 0.0076 26.6 8.0 43 277-320 395-438 (473)
173 PF12606 RELT: Tumour necrosis 23.7 83 0.0018 20.7 2.3 11 308-318 15-25 (50)
174 PF15345 TMEM51: Transmembrane 23.3 73 0.0016 28.2 2.6 25 302-326 67-91 (233)
175 PF06166 DUF979: Protein of un 22.3 2.1E+02 0.0046 26.5 5.4 63 208-270 121-184 (308)
176 PRK10862 SoxR reducing system 22.0 32 0.0007 28.5 0.2 18 273-290 77-94 (154)
177 PF13127 DUF3955: Protein of u 21.7 2.8E+02 0.0061 19.1 5.2 29 174-202 3-31 (63)
178 TIGR00836 amt ammonium transpo 21.7 7.5E+02 0.016 24.0 15.2 56 92-148 152-207 (403)
179 PF03595 SLAC1: Voltage-depend 21.5 2.3E+02 0.0049 26.3 5.9 43 133-191 6-48 (330)
180 PF04995 CcmD: Heme exporter p 21.4 32 0.00069 22.1 0.0 28 298-325 8-35 (46)
181 TIGR00892 2A0113 monocarboxyla 21.4 2.5E+02 0.0055 27.3 6.4 164 180-349 280-455 (455)
182 PF06781 UPF0233: Uncharacteri 21.3 2.5E+02 0.0053 20.9 4.7 57 240-316 29-85 (87)
183 TIGR00939 2a57 Equilibrative N 21.1 4.5E+02 0.0098 25.8 8.1 13 302-314 180-192 (437)
184 TIGR02865 spore_II_E stage II 21.1 1E+03 0.022 25.4 14.5 29 98-126 11-39 (764)
185 PF01102 Glycophorin_A: Glycop 20.7 68 0.0015 25.5 1.8 9 302-310 75-83 (122)
186 COG2056 Predicted permease [Ge 20.3 59 0.0013 31.0 1.5 17 175-191 55-71 (444)
187 TIGR03644 marine_trans_1 proba 20.0 8.2E+02 0.018 23.8 10.1 63 249-311 299-363 (404)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=311.51 Aligned_cols=312 Identities=39% Similarity=0.719 Sum_probs=251.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH
Q 018663 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 2 ~~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (352)
|..++++.++..-++.+...++.|.+++.|++|..+.++|+.+++++ ++++.+.++|+++.++.+++++.++.+.|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999999 88887665543332445678888999999998
Q ss_pred HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHH------hhcccceeeccccceeehHHhhhhhhhhhheecCCcc
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALIS------RMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~------l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~ 155 (352)
+..+.+++.|++|+++++++++.++.|+++.++++++ +|||++++ +++|++++++|+.++...+++..
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence 6677899999999999999999999999999999999 69999999 99999999999988875443211
Q ss_pred ccCC--CCCC-CCCc--cCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcC
Q 018663 156 VSMS--SSSN-LHNE--LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (352)
Q Consensus 156 ~~~~--~~~~-~~~~--~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 230 (352)
...+ +..+ .+.+ ...+..+...|++++++|+++||+|++++|+..++++++...+++++.++++...+.....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000 0000 0000 001123346699999999999999999999999888775677888888887777766666554
Q ss_pred C-CCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHh
Q 018663 231 N-PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAF 309 (352)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~ 309 (352)
. ...|..........++|.+++ +.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~ 321 (358)
T PLN00411 243 NNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITL 321 (358)
T ss_pred CCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 2 233332222234567788865 67899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchh
Q 018663 310 GFYSVIWGQSEE 321 (352)
Q Consensus 310 g~~l~~~~~~~~ 321 (352)
|+++..+.++|+
T Consensus 322 Gv~l~~~~~~~~ 333 (358)
T PLN00411 322 GFYAVMWGKANE 333 (358)
T ss_pred HHHHHHhhhhhh
Confidence 999998765554
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=259.35 Aligned_cols=280 Identities=17% Similarity=0.160 Sum_probs=220.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (352)
+..+++++++++||.+++++|...++ ++|..+.++|++++++. ++++. +++ +.+++ .....|++. ..
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~---~~~----~~~~~---~~~~~g~~~~~~ 71 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFV---ARP----KVPLN---LLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHh---cCC----CCchH---HHHHHHHHHHHH
Confidence 34567889999999999999999976 99999999999998776 65543 111 12222 344456655 55
Q ss_pred HHHHHHHhhcc-cCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCC
Q 018663 84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (352)
Q Consensus 84 ~~~~~~~al~~-~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~ 162 (352)
.+.+++.+++| .++++++++.++.|+++.+++++++|||++.+ +++|++++++|+.++.. ++.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~--------- 135 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL--------- 135 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC---------
Confidence 66678889998 58899999999999999999999999999999 99999999999987762 111
Q ss_pred CCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHHHHHHHhhcCCC---Ccccc
Q 018663 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAERNP---NSWRL 237 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~ 237 (352)
++......|++++++++++|+.|.+++||..++.+++ .....+.+..+.+.........++.. .++..
T Consensus 136 -------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (299)
T PRK11453 136 -------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT 208 (299)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence 1122234799999999999999999999987655432 34445556555554444444343321 11222
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 238 KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
.+...|..++|+++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.
T Consensus 209 ~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 209 IDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 33456889999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc
Q 018663 318 QS 319 (352)
Q Consensus 318 ~~ 319 (352)
++
T Consensus 289 ~~ 290 (299)
T PRK11453 289 LR 290 (299)
T ss_pred hh
Confidence 54
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=258.13 Aligned_cols=277 Identities=14% Similarity=0.145 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 018663 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ 85 (352)
Q Consensus 7 ~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 85 (352)
.+.+++..++||.+++++|.+.++ ++|..++++|+.+++++ ++++...++++ ..+++++......|.++ ..++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~-ll~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGIL-LLAFLLLRGHP----LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHHHhCCC----CCcHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999875 99999999999999998 87765443221 22456777888889887 7788
Q ss_pred HHHHHhh-cccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCC
Q 018663 86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (352)
Q Consensus 86 ~~~~~al-~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (352)
.+++.+. ++++++.++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... +.
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~----------- 144 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN----------- 144 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc-----------
Confidence 8999999 9999999999999999999999986 69999999 999999999999877521 11
Q ss_pred CCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhh
Q 018663 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELI 244 (352)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
.+....|++++++|+++||.|.+..||..++. + ...+.+++.++++...+.....+.... ..++...|.
T Consensus 145 -------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 213 (292)
T PRK11272 145 -------LSGNPWGAILILIASASWAFGSVWSSRLPLPV-G-MMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFL 213 (292)
T ss_pred -------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-hHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHH
Confidence 11234799999999999999999999976543 3 566778888888887777654432211 112335688
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 245 AIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
.++++++++++++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++.+++++
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877544
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1.5e-32 Score=254.84 Aligned_cols=284 Identities=14% Similarity=0.089 Sum_probs=214.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (352)
+.+.+++++++.++||.+++..|..+++ ++|..+.++|+.++.++ +.++. +++++ ++.++ .. ...+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~---~~-~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK---RY-LLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH---HH-HHHHhHHH
Confidence 5678889999999999999999999877 99999999999999988 77652 11111 22222 22 3334444
Q ss_pred HHHHHHHHHhhcc----cCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCcccc
Q 018663 82 CCVQTCLYVGIGY----SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS 157 (352)
Q Consensus 82 ~~~~~~~~~al~~----~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~ 157 (352)
+.++.+++.|++| +++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++... +...+.
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~ 144 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL 144 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh
Confidence 7777788887754 57788899999999999999999999999999 999999999999887632 110000
Q ss_pred CCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 018663 158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 237 (352)
. +.+ .+......|++++++|+++||.|+++.||..++.++ ..... ..+.+.+.+.... ++.+. ..
T Consensus 145 ~---~~~-----~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~-~~~~~---~~~~~~l~~~~~~-~~~~~--~~ 209 (295)
T PRK11689 145 A---ELI-----NNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG-ITLFF---ILTALALWIKYFL-SPQPA--MV 209 (295)
T ss_pred h---hhh-----hccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hhHHH---HHHHHHHHHHHHH-hcCcc--cc
Confidence 0 000 001123469999999999999999999999877654 54322 2233333333332 22211 11
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 238 KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
.+...|..+++.+ ++++++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.
T Consensus 210 ~~~~~~~~l~~~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 210 FSLPAIIKLLLAA-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 2234577777877 489999999999999999999999999999999999999999999999999999999999887664
Q ss_pred cc
Q 018663 318 QS 319 (352)
Q Consensus 318 ~~ 319 (352)
++
T Consensus 289 ~~ 290 (295)
T PRK11689 289 TR 290 (295)
T ss_pred Hh
Confidence 43
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=2.1e-31 Score=246.93 Aligned_cols=279 Identities=10% Similarity=0.005 Sum_probs=222.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC 82 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (352)
..+++..+++++++|+.++.+.|++.++ .+|..+.++|+++++++ ++++.. +++ ++.+++++......|++..
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~--~~~---~~~~~~~~~~~~~~g~~~~ 82 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFK--PWR---LRFAKEQRLPLLFYGVSLG 82 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHh--HHh---ccCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987 99999999999999988 776532 111 1234567777788888777
Q ss_pred HHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCC
Q 018663 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (352)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~ 162 (352)
..+.++++|++|++++.++++..+.|+++.+++. ||+. +..++.++++|+.++. ..+.+
T Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~-~~~~~-------- 141 (293)
T PRK10532 83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLL-PLGQD-------- 141 (293)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheee-ecCCC--------
Confidence 7788899999999999999999999999998873 5544 3445678899997765 22211
Q ss_pred CCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcch
Q 018663 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242 (352)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
.+.....|++++++++++||.|.+..||..++.+. ... .+...++++++.+.....++. .. .+...
T Consensus 142 --------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~ 207 (293)
T PRK10532 142 --------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHGP-ATV-AIGSLIAALIFVPIGALQAGE-AL---WHWSI 207 (293)
T ss_pred --------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hHH-HHHHHHHHHHHHHHHHHccCc-cc---CCHHH
Confidence 11223579999999999999999999999877664 555 456677777777665543321 11 12223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhh
Q 018663 243 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 322 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~ 322 (352)
|...+++++++++++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|+....+..+|+.
T Consensus 208 ~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 208 LPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 55667999999999999999999999999999999999999999999999999999999999999999999877655443
Q ss_pred h
Q 018663 323 K 323 (352)
Q Consensus 323 ~ 323 (352)
|
T Consensus 288 ~ 288 (293)
T PRK10532 288 K 288 (293)
T ss_pred C
Confidence 3
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=2.4e-31 Score=246.86 Aligned_cols=280 Identities=12% Similarity=0.059 Sum_probs=209.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCC-CC-CCCHHHHHHHHHHHH
Q 018663 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RP-PLTVSIICKIFGLGL 79 (352)
Q Consensus 2 ~~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~-~~-~~~~~~~~~~~~~g~ 79 (352)
+..|+++.+++++++||..++..|.. .+ ++|.++.++|++++.++ +.++...+++... .+ ..+++.+.. ...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence 45689999999999999999999985 44 99999999999999887 7766544322110 01 113444433 33555
Q ss_pred HH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccC
Q 018663 80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (352)
Q Consensus 80 ~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~ 158 (352)
++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++.. +.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~-~~------ 147 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLW-TF------ 147 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHH-Hc------
Confidence 55 889999999999999999999999999999999999999999999 99999999999988762 11
Q ss_pred CCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 018663 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRL 237 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 237 (352)
++ . ..++++++++||.|.+..|+..++.. .....+.+.+.++.+...+. .......+..
T Consensus 148 ------------~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 207 (296)
T PRK15430 148 ------------GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQ 207 (296)
T ss_pred ------------CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccC
Confidence 01 1 14688899999999999998754321 11333445555554432221 1111111211
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 238 KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
.+ ..+....+.+.+.+.++|.+|++++|+.|+++++.+.+++|+++.+++++++||++++.+++|+++|++|+.+...+
T Consensus 208 ~~-~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 208 NP-MSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 22233444333478899999999999999999999999999999999999999999999999999999888887654
Q ss_pred cc
Q 018663 318 QS 319 (352)
Q Consensus 318 ~~ 319 (352)
..
T Consensus 287 ~~ 288 (296)
T PRK15430 287 AI 288 (296)
T ss_pred HH
Confidence 43
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=4.9e-31 Score=240.21 Aligned_cols=257 Identities=14% Similarity=0.146 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 018663 17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS 95 (352)
Q Consensus 17 wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~ 95 (352)
||.+++..|..++++.|+....+.|++.+.++ +.+.... + + +++++.+....|.++ ..++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999877789999999999988887 7665322 1 1 224556777888887 99999999999999
Q ss_pred CcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcc
Q 018663 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (352)
Q Consensus 96 ~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
++++++++.++.|+++.+++++++|||++++ +++|+.++++|++++.. ++ +.+..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~ 126 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSIN 126 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------ccccc
Confidence 9999999999999999999999999999999 99999999999988762 11 12234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHH
Q 018663 176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAV 254 (352)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (352)
..|+.++++++++|+.+.+..|+..++.+. +.....+++..+.+++.+.....++. .. .+...|..+.+.+++++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQ---ALSLQWGALLYLGLIGT 202 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CC---cchHHHHHHHHHHHHHH
Confidence 689999999999999999999999877653 24555577888888888877654322 11 13346777889999999
Q ss_pred HHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhh
Q 018663 255 ALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 311 (352)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~ 311 (352)
+++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|.++++.|+
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999986
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=7.4e-30 Score=237.68 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018663 16 LEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYS 95 (352)
Q Consensus 16 ~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 95 (352)
+-....+.+|.++++...|....+.|+..+.+. +.+... .+.+++ ++.+++++++.+..|++++....+.+.|++|+
T Consensus 13 ~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 13 LNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWS-SGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444589999976577999999999888776 555421 111222 45678899999999999988899999999999
Q ss_pred CcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcc
Q 018663 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (352)
Q Consensus 96 ~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
+++.++++.++.|+++.+++++++|||++.+ ++.|++++++|+.+.. .. +.+..
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~-----------------~~~~~ 143 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DT-----------------ELSFN 143 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CC-----------------ccccc
Confidence 9999999999999999999999999999999 9999999999997543 11 11233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHHHHHHhhcCCCC---ccccC----Cc-chhhH
Q 018663 176 IIGGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNPN---SWRLK----PD-TELIA 245 (352)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~vl~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~----~~-~~~~~ 245 (352)
..|++++++|+++|++|.+..||..+ +.++ .+.+.+++..+++.++|.....++... ++... .. ..+..
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDK-TNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 57999999999999999999999887 6665 899999999999999998876553211 11110 00 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchh
Q 018663 246 IGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 321 (352)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~ 321 (352)
.++.+..+....+.++++++++.+|+++++..+++|+++++++++++||++++.+++|.++++.|++++++.|+||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 2222222333333466689999999999999999999999999999999999999999999999999998754433
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=1.3e-27 Score=221.46 Aligned_cols=297 Identities=16% Similarity=0.187 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~~~~-~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (352)
..++-=+.+++-..+...+..+.+.|.+ |..-.++-+..-.++ ..++...++++++..+.-+++++++++.+++...+
T Consensus 14 ~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~a 92 (334)
T PF06027_consen 14 VLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEA 92 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHH
Confidence 3344445677777888888888776655 555555555554444 55554443332111222346678889999999999
Q ss_pred HHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCC
Q 018663 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (352)
Q Consensus 85 ~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (352)
+.+.+.|++|++.+.++++.+++-+++.+++++++|+|+++. +++|+++++.|++++...+....+.
T Consensus 93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~~------- 159 (334)
T PF06027_consen 93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGSD------- 159 (334)
T ss_pred HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccccc-------
Confidence 999999999999999999999999999999999999999999 9999999999998887554322110
Q ss_pred CCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCC-CccccCCcchh
Q 018663 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTEL 243 (352)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~ 243 (352)
+.++++..+||+++++|+++||+++++.++..++.+. .+...+..++|.++..+...++|... ...+.. ...
T Consensus 160 ----~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~ 232 (334)
T PF06027_consen 160 ----SSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQV 232 (334)
T ss_pred ----CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhh
Confidence 0245678899999999999999999999999999875 88889999999999988887776542 111111 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhh
Q 018663 244 IAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~ 323 (352)
........++....|.+....++..+|+..++...+..+++++++++++|+++++..++|.++|++|+++++..+++..+
T Consensus 233 ~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 233 IGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 22223334466778888889999999999999999999999999999999999999999999999999999887665443
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=2.4e-27 Score=218.49 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhh-ccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018663 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYY-RNRTRPPLTVSIICKIFGLGLISCCVQ 85 (352)
Q Consensus 7 ~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (352)
.++.++++++|+...+..|...++ .++. .+++.....+. +.|+...+. ++.+ +..+++.+...+..+..+..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVL-LTPYGLWYLAQVGW-SRLPATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHH-HHHHHHHhcccCCC-CCcchhhHHHHHHHHHHHHHHH
Confidence 567889999999999999976655 4443 46677677666 766654432 2222 2233344444455555459999
Q ss_pred HHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCC
Q 018663 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (352)
Q Consensus 86 ~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 165 (352)
.+++.|+++.+++.++.+.++.|+++.+++++++|||++.+ +++|+.+++.|+.++.. ++.
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~------------ 138 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF------------ 138 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc------------
Confidence 99999999999999999999999999999999999999999 99999999999987762 111
Q ss_pred CccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChh---hHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcch
Q 018663 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE---LMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTE 242 (352)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
......|+.++++++++|+.|.++.|+..++.++. .....+.+..+++.+.+.....++. .+. .+...
T Consensus 139 ------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 209 (281)
T TIGR03340 139 ------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQ 209 (281)
T ss_pred ------cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHH
Confidence 11223578899999999999999998875544321 1122233333212222221111211 111 12234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhh
Q 018663 243 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYS 313 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l 313 (352)
+....+.+.++++++|.+|++++++.|+++++.+.+++|+++.+++++++||++++.+++|.++|++|+++
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 56778888899999999999999999999999999999999999999999999999999999999999875
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=7.3e-27 Score=221.25 Aligned_cols=282 Identities=14% Similarity=0.117 Sum_probs=221.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCC--CHHHHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLIS 81 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~-~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 81 (352)
+..+..+.-..+-.......|..++. ++ |+.+.++|++++.++ ..+......+ ++ ++. .+++++..+..|+++
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~~~~-~~-~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWATGFR-KI-PRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHhCCC-CC-CCCCCHHHHHHHHHHHHHHH
Confidence 44455555555556677789999987 99 999999999999776 5544322122 12 333 245788999999999
Q ss_pred HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCC
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (352)
...+...+.|+++++++.++++.++.|+++++++++++|||++++ ++.++++++.|+.+... .+
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~-~~--------- 188 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV-KE--------- 188 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec-cc---------
Confidence 555777889999999999999999999999999999999999999 99999999999988762 11
Q ss_pred CCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCC------hhhHHHHHHHHHHHHHHHHHHHhhcCC--CC
Q 018663 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP------EELMATFICCVFVTIQSTVVALIAERN--PN 233 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~ 233 (352)
.+....|++++++|+++||+++++.||..++.+ ++.+...++...+.++++|+....|.. ..
T Consensus 189 ----------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~ 258 (350)
T PTZ00343 189 ----------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVP 258 (350)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 122357999999999999999999999886532 235667777889999999987755532 11
Q ss_pred ccc----cCCcchhhHHHHHHHHHHHHHHHHHHH----HhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHH
Q 018663 234 SWR----LKPDTELIAIGCSAFFAVALRSLAHTW----ACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGAT 305 (352)
Q Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~ 305 (352)
.+. ......+..+.+ .++.++++|.+|+. ++++.+|.+.++...++|+++++++++++||++++.+++|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~ 337 (350)
T PTZ00343 259 VWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMA 337 (350)
T ss_pred HHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHH
Confidence 111 011112233444 45678999999995 999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcc
Q 018663 306 IVAFGFYSVIWG 317 (352)
Q Consensus 306 lii~g~~l~~~~ 317 (352)
+++.|++++++.
T Consensus 338 lii~Gv~lYs~~ 349 (350)
T PTZ00343 338 VAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHhhc
Confidence 999999998765
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.94 E-value=9.1e-26 Score=205.25 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccC----CCCCCCH-HHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTV-SIICKIFGLGL 79 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~----~~~~~~~-~~~~~~~~~g~ 79 (352)
|+++.+++++++||.++++.|. ..+ ++|.+++++|++++.++ ++++...++++. +.++.++ +.+......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 5889999999999999999998 445 99999999999999888 776553433210 1011112 23445677777
Q ss_pred HHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCC
Q 018663 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS 159 (352)
Q Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~ 159 (352)
+.+.++.++++|++++++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++.. .+
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~-~~------- 144 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIV-LK------- 144 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHH-Hc-------
Confidence 77899999999999999999999999999999999999999999999 99999999999987752 11
Q ss_pred CCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 018663 160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 239 (352)
++. ...+++++++||.|.+..|+..++ +. ....... ....+...+... ..+........+
T Consensus 145 -----------~~~-----~~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 204 (256)
T TIGR00688 145 -----------GSL-----PWEALVLAFSFTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLL-QTDFATVQQTNP 204 (256)
T ss_pred -----------CCc-----hHHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHH-HhccCcccccCc
Confidence 011 135788999999999999997653 22 2222211 111112111111 111111111112
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHH
Q 018663 240 DTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTL 291 (352)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~ 291 (352)
...|..+.+.+++ +.++|.+|++++|+.++++++.+.+++|+++++++++.
T Consensus 205 ~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 205 FPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2357778888875 88999999999999999999999999999999999763
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=5.3e-24 Score=196.09 Aligned_cols=282 Identities=20% Similarity=0.236 Sum_probs=215.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH
Q 018663 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 2 ~~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (352)
+........++..+.|+......|...++..++....+.|.+.+.+. ..+.....+.. + ++..++ +.+....+.+.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~ 79 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLEPRG-L-RPALRP-WLLLLLLALLG 79 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhhccc-c-cccccc-hHHHHHHHHHH
Confidence 34567788888899999999999999865356666666699888776 55443222111 1 111111 34455566666
Q ss_pred -HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHH-HHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCC
Q 018663 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS 159 (352)
Q Consensus 82 -~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~-~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~ 159 (352)
...+.+++.++++++++.++++.++.|+++.++++ +++|||++++ ++.|+.+++.|++++......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~----- 148 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGG----- 148 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcc-----
Confidence 99999999999999999999999999999999997 7779999999 9999999999998887321110
Q ss_pred CCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHH-HHHHHHHHHHHHHHHhhcCCCCccccC
Q 018663 160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF-ICCVFVTIQSTVVALIAERNPNSWRLK 238 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 238 (352)
... ...|+.+++.++++++++.+..|+.. +.++ ..... ++.. +... ........ ..+ ...
T Consensus 149 -----------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~~-~~~~~~~~-~~~--~~~ 209 (292)
T COG0697 149 -----------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLGP-VTLALLLQLL-LALL-LLLLFFLS-GFG--API 209 (292)
T ss_pred -----------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh-HHHHHHHHHH-HHHH-HHHHHHhc-ccc--ccC
Confidence 011 56899999999999999999999988 5443 45544 4443 2221 21112111 111 122
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 239 PDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
....+..+.+.+++++++++.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 2345788889999999999999999999999999999999999999999999999999999999999999999998776
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.90 E-value=1.8e-24 Score=187.86 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (352)
++..+..+. .++....++.+..+ + .+|......|.+.-.+. -.|..++++.....|+-.| .++++.|+.|+.+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~-e-~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tg 110 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVL-E-NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTG 110 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhh-c-cChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhH
Confidence 344455555 55555555555554 4 78999999997776666 6665544443322233332 4667889999889
Q ss_pred HHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCC
Q 018663 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (352)
Q Consensus 85 ~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (352)
....|+|++|.+-++|+++..++|.+|.+++|.++|||.+.. ...|..+.+.||++++ .+.+-..+..+++
T Consensus 111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFGDTTEGE 181 (346)
T ss_pred HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccCCCcccc
Confidence 999999999999999999999999999999999999999999 9999999999999887 2332222111122
Q ss_pred CCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-cchh
Q 018663 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP-DTEL 243 (352)
Q Consensus 165 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (352)
+- +..+....|.+.++.|+++-|-..++.|+..|+.|. .....|....+++..++.....+ .|..+. ..+|
T Consensus 182 ~~---s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr 253 (346)
T KOG4510|consen 182 DS---SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDR 253 (346)
T ss_pred cc---ccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhcc----ceecCccccce
Confidence 10 123556678899999999999989999999898887 66667777777777666554322 233322 2456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 244 IAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
..++.+|+ ...+++.+.+.++|+..+..++++.+.+.+++.++.++++||.|++.++.|.++|+.+.+.....|.
T Consensus 254 ~l~~~lGv-fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 254 WLFVNLGV-FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred EEEEEehh-hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 66677786 5588999999999999999999999999999999999999999999999999999999888765443
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=169.00 Aligned_cols=276 Identities=13% Similarity=0.048 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (352)
|++.++.+++.--....+.|.+... +++.-.+++|..+++++ ++++. |..+ ++.+++++......|..-...|
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~----RPwr-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALF----RPWR-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHh----hHHH-hccChhhhHHHHHHHHHHHHHH
Confidence 6788888888888888999999988 99999999999999998 77653 2222 4567788899999999889999
Q ss_pred HHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCC
Q 018663 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (352)
Q Consensus 86 ~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 165 (352)
.+||.+++.+|-+.+..+.++-|+....++.--.+ ..+-+.+.+.|..++... ++
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~------------d~vwvaLAvlGi~lL~p~-~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLR------------DFVWVALAVLGIWLLLPL-GQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhccchh------------hHHHHHHHHHHHHhheec-cC------------
Confidence 99999999999999999999999988776542222 334456778888777632 21
Q ss_pred CccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhH
Q 018663 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIA 245 (352)
Q Consensus 166 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
+....+..|..+++.++.||+.|.+..||..+..|. .......+.++.++..|+...-.+ + ... ++.....
T Consensus 141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~ag-~-~l~--~p~ll~l 211 (292)
T COG5006 141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQAG-P-ALF--SPSLLPL 211 (292)
T ss_pred ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhhhhcc-h-hhc--ChHHHHH
Confidence 234566799999999999999999999999876666 777888899999999998873221 1 111 1122444
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhh
Q 018663 246 IGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 322 (352)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~ 322 (352)
-+..++.++.+.|.+-..++++.++.+.++++.++|.++.+.+++++||++|+.||+|.+.|+.+..-..+..||+.
T Consensus 212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999887776555544
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.88 E-value=2.6e-21 Score=178.83 Aligned_cols=274 Identities=14% Similarity=0.087 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (352)
++++.++++++||...+..|... |.++.++. |..++.++ +..+....++. + ...++.+..-+..|++...++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~~-~--~~~~~~~~~g~l~G~~w~ig~ 73 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVLP-E--FWALSIFLVGLLSGAFWALGQ 73 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhCC-c--ccccHHHHHHHHHHHHHHhhh
Confidence 57889999999999999999865 58888775 77777777 65544443321 1 112455566677777778999
Q ss_pred HHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccce----eehHHhhhhhhhhhheecCCccccCCC
Q 018663 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS 160 (352)
Q Consensus 86 ~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~----~ig~~l~~~Gv~ll~~~~~~~~~~~~~ 160 (352)
.+++.+.++++++.+..+.+ +.|++..+.+.+++|||.+.+ + ++|+++.++|++++...++++..
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~---- 143 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAG---- 143 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccc----
Confidence 99999999999999999988 899999999999999999999 8 99999999998877532211100
Q ss_pred CCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHH---HHHHHHHHHHHHhhcCCCCcccc
Q 018663 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICC---VFVTIQSTVVALIAERNPNSWRL 237 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~ 237 (352)
+ .......+|.++++.|+++|+.|.+..|+. ++++ .+..+.+. +.++.+..+... . . .++
T Consensus 144 ---~-----~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~-~~~~~~~~~g~~~~~~~~~~~~~--~-~-~~~-- 206 (290)
T TIGR00776 144 ---I-----KSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDG-LSVLLPQAIGMVIGGIIFNLGHI--L-A-KPL-- 206 (290)
T ss_pred ---c-----ccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCc-ceehhHHHHHHHHHHHHHHHHHh--c-c-cch--
Confidence 0 000233679999999999999999999976 3444 66643333 333333322211 0 0 111
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhc-cCCceEEeeccchHHHHHHHHHHHHhCCccchhhh----hhHHHHHhhhh
Q 018663 238 KPDTELIAIGCSAFFAVALRSLAHTWACH-KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFY 312 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~----iG~~lii~g~~ 312 (352)
.+...+..++ .|++ .+++|.+|..+.+ +.++++++.+.+++|+.+.+++++++||+.++.++ +|.++++.|+.
T Consensus 207 ~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~ 284 (290)
T TIGR00776 207 KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAAN 284 (290)
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHH
Confidence 1222344444 7776 7999999999999 99999999999999999999999999999999999 99999999998
Q ss_pred hhhc
Q 018663 313 SVIW 316 (352)
Q Consensus 313 l~~~ 316 (352)
+...
T Consensus 285 l~~~ 288 (290)
T TIGR00776 285 ILGI 288 (290)
T ss_pred HHhc
Confidence 8654
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=8.1e-20 Score=162.10 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=220.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCC--CCCHHHHHHHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLI 80 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~--~~~~~~~~~~~~~g~~ 80 (352)
..||.++.+.+.++||..+...|... + .++.++...|..-+..+ +..+....++.+..+ ..++|.+..+.+.+..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~-~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE-P-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 46899999999999999999999863 5 99999999999999888 766554444322111 2344667777777777
Q ss_pred HHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCC
Q 018663 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS 160 (352)
Q Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~ 160 (352)
-..+...|.+|.++..+-++++=++..|++..+++++++|||++.. |++.+.++.+||.......+
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g-------- 147 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG-------- 147 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence 7999999999999999999999999999999999999999999999 99999999999987774322
Q ss_pred CCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCc
Q 018663 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPD 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 240 (352)
... ...+.=+++|++|-.+-|+.. .++ .+....-+..-.+..+...+..+.........+.
T Consensus 148 ------------~lp----wval~la~sf~~Ygl~RK~~~--v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~ 208 (293)
T COG2962 148 ------------SLP----WVALALALSFGLYGLLRKKLK--VDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN 208 (293)
T ss_pred ------------CCc----HHHHHHHHHHHHHHHHHHhcC--Cch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence 122 234445889999998865543 343 5555555555555555544433332210111223
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccch
Q 018663 241 TELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
..+..+...|+ .+++...+|..+-|+++-+..+.+.|++|..-.+++++++||+++..+++..++|-+|+.++.++.-+
T Consensus 209 ~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 209 SLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred hHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665 88999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred hh
Q 018663 321 EE 322 (352)
Q Consensus 321 ~~ 322 (352)
+.
T Consensus 288 ~~ 289 (293)
T COG2962 288 TA 289 (293)
T ss_pred HH
Confidence 43
No 18
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=164.55 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
..+..+..+.+.+..++.+..|+.+++++..+++.+++-+||..++.++..||+++. |++++++++.|++++..
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~ 231 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTM 231 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEe
Confidence 445566667777999999999999999999999999999999999999999999999 99999999999999986
Q ss_pred ecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHH---HHHHHHHHHHHHHHHHH
Q 018663 150 YKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMA---TFICCVFVTIQSTVVAL 226 (352)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~ 226 (352)
.+..+.+. ........|++++++||+.||.|.++.||...+.+..+.+ -.+..++..++++|..+
T Consensus 232 ~~s~~~~~------------~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~ 299 (416)
T KOG2765|consen 232 GDSKQNSD------------LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLI 299 (416)
T ss_pred cccccccc------------CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHH
Confidence 54332211 3456678999999999999999999999987665322322 24445566666666554
Q ss_pred hhcC-CCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHH
Q 018663 227 IAER-NPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGAT 305 (352)
Q Consensus 227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~ 305 (352)
+.+. ....++.|.......+++.+.++++++-++|.++.-..+|..++..+.++.+.+++.+.++-|.++|+.+++|.+
T Consensus 300 iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi 379 (416)
T KOG2765|consen 300 ILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSI 379 (416)
T ss_pred HHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3222 123344444455666778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccc
Q 018663 306 IVAFGFYSVIWGQS 319 (352)
Q Consensus 306 lii~g~~l~~~~~~ 319 (352)
.|++|.+.+++...
T Consensus 380 ~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 380 PIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHhheecccc
Confidence 99999999987654
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.80 E-value=1.6e-17 Score=154.73 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=205.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHH
Q 018663 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI 113 (352)
Q Consensus 34 ~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~i 113 (352)
|..+++..++...+. -.+.....+++ +.++..+..++..+++..++..+.+.|++|++...-.+..++.|+++++
T Consensus 32 ~~~lt~~q~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 32 PLFLTFVQFAFNALF-SFILLSLFKFP----KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHhcccc----CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 788888888887776 55544333311 1222335677888888899999999999999999999999999999999
Q ss_pred HHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH
Q 018663 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (352)
Q Consensus 114 la~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~ 193 (352)
++.+++|+|.+++ ++.++++..+|+.+....+..+.... + ........|+++.+++.++.|+..
T Consensus 107 ~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~~------~----~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 107 LGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSSS------N----SSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccccc------c----cccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999988875543221110 0 112223449999999999999999
Q ss_pred HHHHhhhhcCC-hhhHHHHHHHHHHHHHHHHHHHh--hcCCCCccc--cCCcchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 018663 194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALI--AERNPNSWR--LKPDTELIAIGCSAFFAVALRSLAHTWACHKK 268 (352)
Q Consensus 194 vl~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (352)
+.++|..++++ .+.+.+++...++.++..+.... .++..+.+. ...+..+..++... ++..++..+.++..++.
T Consensus 171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~ 249 (303)
T PF08449_consen 171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKF 249 (303)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 99999987653 24889999999999998888776 222111111 11112233333333 46677788888899999
Q ss_pred CceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchh
Q 018663 269 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 321 (352)
Q Consensus 269 ~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~ 321 (352)
+|...++...+.-+++++++++++|+++++.+|+|.++++.|..+....++|+
T Consensus 250 ~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 250 SALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999877765
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.73 E-value=4.3e-17 Score=149.70 Aligned_cols=275 Identities=13% Similarity=0.140 Sum_probs=210.4
Q ss_pred HHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 018663 19 GSSTLNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSS 96 (352)
Q Consensus 19 ~~~~~~k~~~~--~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 96 (352)
......|+.++ +.--|..++..+...+.+. ++.......++.. +..++..+...+..|++.+.+..+.+.++.|.+
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVP 108 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccc
Confidence 33456788887 4456888888877777776 5554433333222 222335678889999999999999999999999
Q ss_pred cchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcch
Q 018663 97 PTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWI 176 (352)
Q Consensus 97 ~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (352)
++....+..++|+++.++++++.+|+.+.. .+..+...+.|+.+-.. . +.+...
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~-~-------------------e~~fn~ 162 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV-T-------------------ELSFNL 162 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee-c-------------------cccccH
Confidence 999999999999999999999999999999 88888888888755442 1 134566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh----cCChhhHHHHHHHHHHHHHHH-HHHHhhcCCCCc-ccc-CCcchhhHHHHH
Q 018663 177 IGGLVLAAGSFFLSLLYIVQTSIIR----EYPEELMATFICCVFVTIQST-VVALIAERNPNS-WRL-KPDTELIAIGCS 249 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~vl~k~~~~----~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 249 (352)
.|.+.++.+.+..++.++++|++.+ +.++ ++...++...+.+.++ |.....+++... +.. +.........+.
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~-~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNS-MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCc-hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence 9999999999999999999999884 2455 9999999999999998 776655553220 011 111112222233
Q ss_pred HHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhh
Q 018663 250 AFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~ 323 (352)
. .+...-....+..+.+.+|.+-++.+...-++.++.++++++|+.++.+.+|.++.++|++++++.|+|+++
T Consensus 242 s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 242 S-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred H-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3 233344455568899999999999999999999999999999999999999999999999999987776554
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=1.8e-17 Score=143.53 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018663 15 CLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIG 93 (352)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~-~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~ 93 (352)
++-......+......|++ |..-.+.....-+++ -.++..++++ . + .-.|.++++.+++..-++.+...|.|
T Consensus 28 L~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~--~---~-~~~~~hYilla~~DVEaNy~vV~AyQ 100 (336)
T KOG2766|consen 28 LLITSTAFTSSELARKGINAPTSQTFLNYVLLALV-YGPIMLFRRK--Y---I-KAKWRHYILLAFVDVEANYFVVKAYQ 100 (336)
T ss_pred HHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHH-HhhHHHhhhH--H---H-HHHHHHhhheeEEeecccEEEeeehh
Confidence 3333444444455445444 555556666666666 6776655432 1 1 12346688888888888889999999
Q ss_pred ccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCC
Q 018663 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK 173 (352)
Q Consensus 94 ~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
|++-+...++..-....+.+++|+++|.|.++. ++.|+.+|+.|++++.+.+-.. .. ++++.
T Consensus 101 yTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~a-gd-----------~aggs 162 (336)
T KOG2766|consen 101 YTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHA-GD-----------RAGGS 162 (336)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeecc-cc-----------ccCCC
Confidence 999999999999888889999999999999999 9999999999999988543221 11 14567
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHH
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFA 253 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
+..+|+.+++++|-+||..++....+.++.|. .+.+....++|+++..+- ++++..... ....... ....+....+
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d~-~elm~~lgLfGaIIsaIQ-~i~~~~~~~-tl~w~~~-i~~yl~f~L~ 238 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-VELMGFLGLFGAIISAIQ-FIFERHHVS-TLHWDSA-IFLYLRFALT 238 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcCcH-HHHHHHHHHHHHHHHHHH-Hhhhcccee-eEeehHH-HHHHHHHHHH
Confidence 78899999999999999999999999999886 999999999999998887 445432111 1111011 1122224456
Q ss_pred HHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhh
Q 018663 254 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~ 315 (352)
.++-|.+....+|.-+++..++.....-.++.+. -.+|-+.+|..++..+.+..|.+++.
T Consensus 239 MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 239 MFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 6667777778899999999999999999999988 56788899999999999999988883
No 22
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.63 E-value=4.6e-14 Score=125.66 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhccC-C-CCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHH
Q 018663 34 DFVLIVYSNAFAAIFILLPSTFIYYRNR-T-RPPLTVSI-ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF 110 (352)
Q Consensus 34 ~~~~~~~R~~~a~l~~l~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~ 110 (352)
|..++.+.++.=.++ .......+++.. + +.+.+|++ ++++...|+..+..-++.+++++|++.+..+...+++++|
T Consensus 45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 666666666554444 333333333221 1 12456665 5677788888899999999999999999999999999999
Q ss_pred HHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHH
Q 018663 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS 190 (352)
Q Consensus 111 t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a 190 (352)
+.+++.++.-||++|. -..-+.+..+|+.+++ +++ ++....|..+.+.|+++-+
T Consensus 124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~Ks-------------------Tqf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKS-------------------TQFNIEGFFLVLAASLLSG 177 (349)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecc-------------------cceeehhHHHHHHHHHhhh
Confidence 9999999999999997 6556666667776666 333 3345578888888888888
Q ss_pred HHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHHHHHHHhhcCCCC-----ccccCCc-chhhHHHHHHHHHHHHHHHH
Q 018663 191 LLYIVQTSIIREYP----EELMATFICCVFVTIQSTVVALIAERNPN-----SWRLKPD-TELIAIGCSAFFAVALRSLA 260 (352)
Q Consensus 191 ~~~vl~k~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 260 (352)
+...+.+++.++.| .|....+.......+.++|..+.+|+... .|..... ..+..+.+.++ +..+++.+
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l 256 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLL 256 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHH
Confidence 87777777776654 36777777777777788888888877432 2222222 12333333333 33344333
Q ss_pred H---HHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhh
Q 018663 261 H---TWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 314 (352)
Q Consensus 261 ~---~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~ 314 (352)
- +..+.+.+..+.|+.....-+-+.+++.++.+|+++...|+|.++...|+...
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3 35578899999999999999999999999999999999999999999999887
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.4e-14 Score=120.22 Aligned_cols=228 Identities=14% Similarity=0.073 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
+.+..+++-..+.+...+.|++|.+-.+..+=.++-|+-+.+++..+.+++.+|+ +...+.+.++||++.....
T Consensus 86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~ 159 (337)
T KOG1580|consen 86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKE 159 (337)
T ss_pred hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhccc
Confidence 4667777777889999999999999999999999999999999999999999999 9999999999998877332
Q ss_pred CCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHHHHHHHhhcC
Q 018663 152 GPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAER 230 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 230 (352)
++..+ ........|.++.++|-..-++....+.+..+.+. ....++++..+.+++.+....+++++
T Consensus 160 ~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE 226 (337)
T KOG1580|consen 160 NKVGG-------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE 226 (337)
T ss_pred cccCC-------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence 32211 23567889999999999999999999988876552 22678888999999888776665543
Q ss_pred CCC--ccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 018663 231 NPN--SWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 308 (352)
Q Consensus 231 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii 308 (352)
.+. .+..-.+..|.-+..+++ ++.+++.+.+.-+...||.+.|+.....-.++++.++++++.+++.+||+|.++++
T Consensus 227 lweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF 305 (337)
T KOG1580|consen 227 LWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVF 305 (337)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Confidence 221 111111233555666665 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccc
Q 018663 309 FGFYSVIWGQS 319 (352)
Q Consensus 309 ~g~~l~~~~~~ 319 (352)
.|...-....|
T Consensus 306 ~aL~~D~~~GK 316 (337)
T KOG1580|consen 306 SALTADVVDGK 316 (337)
T ss_pred HHhhhHhhcCC
Confidence 99877655444
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.60 E-value=7.1e-15 Score=114.52 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (352)
...+..++++++||...++.|..+++ +||..-++.|.....++ +..+....++.......++|.|..+.+.|+.+..+
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 45678899999999999999999966 99999999999998888 77776666654332235778889999999888999
Q ss_pred HHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 85 ~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..+||.|++...++....+..++|+++.+++++++|||+|.. +|+|+.+.++|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999 9999999999998765
No 25
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=8.6e-14 Score=108.50 Aligned_cols=136 Identities=19% Similarity=0.155 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHH
Q 018663 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 257 (352)
Q Consensus 178 G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
..++++++++.+++..+..|--.++.++ ..-+..+.++..+.+..+.+..+ +.......+...|..+...| ..++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp-~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSG-la~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDP-DFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSG-LAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHH-HHHHHH
Confidence 4688999999999999999998888776 88888888888888777766544 22222223556688888888 599999
Q ss_pred HHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 258 SLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 258 ~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
+.+|+++++..+++++..+.-+.|++++++++++++|++|..+++|.++|.+|.+++.+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999988754
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3.2e-12 Score=117.03 Aligned_cols=300 Identities=12% Similarity=0.086 Sum_probs=210.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHhHhhhhhcc---CCCCC------CCHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN---RTRPP------LTVSIIC 72 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~---~~~~~~~~~R~~~a~l~~l~~i~~~~~~~---~~~~~------~~~~~~~ 72 (352)
.-++.++...+-++......|+....+ +.|-..++.--.+-.++ ...+.+...|+ +..+. .++++..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 346778888899999999999997665 55666666665555554 44443333211 11011 1445667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecC
Q 018663 73 KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (352)
Q Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~ 152 (352)
+..+-+++++..+.+.|.++.+.+++..++..++--+-|++++.+++++|.+++ ||...++.+.|+.++.....
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence 778888888888889999999999999999999999999999999999999999 99999999999988873222
Q ss_pred CccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChh-hHHHHHHHHHHHHHHHHHHHhhcCC
Q 018663 153 PALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAERN 231 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 231 (352)
+..+..+ .........|....+.+++..++..++.+|..|.-..+ ..-+.-..++|.+......+..+.+
T Consensus 168 ~~~~a~~---------~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~ 238 (345)
T KOG2234|consen 168 SPTGAKS---------ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGE 238 (345)
T ss_pred CCCCccC---------CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2111110 03355678999999999999999999999998763221 2233333344555444444433333
Q ss_pred CCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhh
Q 018663 232 PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 311 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~ 311 (352)
...| ..-..+|....+..++.++.+=.+-...+|+.+-..=+....+..+++.+.++.++|-++|....+|..+++.++
T Consensus 239 ~i~~-~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si 317 (345)
T KOG2234|consen 239 AINE-YGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI 317 (345)
T ss_pred cccc-CCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 2222 112233444444455555555555555566666555556666889999999999999999999999999999999
Q ss_pred hhhhcccchh
Q 018663 312 YSVIWGQSEE 321 (352)
Q Consensus 312 ~l~~~~~~~~ 321 (352)
.++...+++.
T Consensus 318 ~lY~~~P~~~ 327 (345)
T KOG2234|consen 318 FLYSLYPARD 327 (345)
T ss_pred HHhhcCCccc
Confidence 9999665554
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.51 E-value=7e-13 Score=119.11 Aligned_cols=230 Identities=15% Similarity=0.178 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
++|+..++.+-+++.+..+.+.|.++++.+++.-.++.++-.++|++++++++|+|++.+ +|.++.+.++|+++
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 457778888999999999999999999999999999999999999999999999999999 99999999999988
Q ss_pred hheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChh-hHHHHHHHHHHHHHHHHHH
Q 018663 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVA 225 (352)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~-~~~~~~~~~~~~v~~~~~~ 225 (352)
+........+. ..+.+.+.+........|.+..++++++.++..+..+|..|+.+.+ ..-+....+.|.++.++..
T Consensus 87 v~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 87 VQLSSSQSSDN---SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred eecCCcccccc---ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 76432221100 0000100012245568999999999999999999999999876432 3444444555666555554
Q ss_pred HhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHH
Q 018663 226 LIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGAT 305 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~ 305 (352)
...+..... .......+-...+..++.+.++=.+-...+|+.+...=+.......+++.++++.++|.+++....+|..
T Consensus 164 ~~~~~~~~~-~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 164 LLSDGSAIS-ESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred hcccccccc-cCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 433221100 0111122333344455566666666677788888888888899999999999999999999999999976
Q ss_pred H
Q 018663 306 I 306 (352)
Q Consensus 306 l 306 (352)
+
T Consensus 243 ~ 243 (244)
T PF04142_consen 243 L 243 (244)
T ss_pred c
Confidence 5
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.4e-11 Score=111.23 Aligned_cols=275 Identities=11% Similarity=0.084 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018663 18 VGSSTLNKAAMNKGTSDFVLIV--YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYS 95 (352)
Q Consensus 18 g~~~~~~k~~~~~~~~~~~~~~--~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 95 (352)
....+..|..+...--|..+.. .+.+...+. +...-.. + -.+.++++++..++.+...++..+....-..+++|.
T Consensus 25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~-~-lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~l 101 (314)
T KOG1444|consen 25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRL-G-LVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYL 101 (314)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHh-c-eeecCCcChHHHHHHccHHHHHHHHHHHcccccccc
Confidence 3445567888765422333333 666665554 4433211 1 112267888999999999999999999999999999
Q ss_pred CcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcc
Q 018663 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (352)
Q Consensus 96 ~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (352)
++...+++.+.+|+++++....++|.|++.+ .+..+....+|...-... +....
T Consensus 102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~--------------------d~sf~ 155 (314)
T KOG1444|consen 102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT--------------------DLSFN 155 (314)
T ss_pred CchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc--------------------cceec
Confidence 9999999999999999999999999999998 888888887877554421 12233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHHHHHHHhhcCCC------CccccCCcchhhHHHH
Q 018663 176 IIGGLVLAAGSFFLSLLYIVQTSIIREY-PEELMATFICCVFVTIQSTVVALIAERNP------NSWRLKPDTELIAIGC 248 (352)
Q Consensus 176 ~~G~~~~l~aa~~~a~~~vl~k~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 248 (352)
..|+.+++...+.-+.+.+..||..+.. -....+.+|..+.+.+.+.+..+++++.. ++|.. ...+..+..
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~l 233 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLL 233 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHH
Confidence 3589999999999999999999876532 11367889999999999888887776411 11221 234667778
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhhc
Q 018663 249 SAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 324 (352)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 324 (352)
.++.+.++.|..+ ++.+..++++-++.+...-..+.+-..+++|++.++...+|..+-++|-++++..+.|+++.
T Consensus 234 Scv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 234 SCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 8887777776655 78889999999999988888888888889999999999999999999999998876555433
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.45 E-value=2.2e-13 Score=109.34 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 018663 187 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACH 266 (352)
Q Consensus 187 ~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 266 (352)
++||.+.+..|+..++.|+ ....++++..+++ ..+.....+... ....+...+....+.+++++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISP-LSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCCH-HHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4689999999999999886 9999999999998 666665544332 23344456777888898889999999999999
Q ss_pred cCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhh
Q 018663 267 KKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 267 ~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~ 315 (352)
+.+++.++.+.+++|+++.++++++++|++++.+++|.++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.44 E-value=2.5e-13 Score=108.95 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 018663 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG 93 (352)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~ 93 (352)
++||...++.|...++ .||....++|+..+.+. +.... ..+++.. ++.+.+++......|.++ ..++.+++.|++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999999988 99999999999999853 33322 2333222 445667778888889887 999999999999
Q ss_pred ccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 94 ~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
+++++.++.+.++.|+++.+++++++|||++++ +++|+++.+.|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999997764
No 31
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.4e-10 Score=103.75 Aligned_cols=265 Identities=14% Similarity=0.122 Sum_probs=197.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHH
Q 018663 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF 112 (352)
Q Consensus 33 ~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ 112 (352)
++..+++...+.+.++ -.......+++ ...+..+.++...++.+..+..+-|.|++|++--.-.+-.++--+-++
T Consensus 50 ~~~fL~~~q~l~~~~~-s~~~l~~~k~~----~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLV-SYAMLKWWKKE----LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHhccccc----CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 3455555555555554 43222222222 112234567777788888899999999999999999999998888889
Q ss_pred HHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHH
Q 018663 113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL 192 (352)
Q Consensus 113 ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~ 192 (352)
+.+.++.|.|.++. +-....+.-.|+.+..+.+..+... + ++.+....|..++...-+.-++.
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s~~--~---------~g~~ns~~G~~Ll~~~L~fDgfT 187 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDSSS--K---------SGRENSPIGILLLFGYLLFDGFT 187 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCCcc--c---------cCCCCchHhHHHHHHHHHHHhhH
Confidence 99999999999999 9999999999998888764433111 1 34567789999999999999999
Q ss_pred HHHHHhhhhcC-ChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccc--cCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018663 193 YIVQTSIIREY-PEELMATFICCVFVTIQSTVVALIAERNPNSWR--LKPDTELIAIGCSAFFAVALRSLAHTWACHKKG 269 (352)
Q Consensus 193 ~vl~k~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (352)
+..+.++.++. -++..++++..+++++........-+...+... ...+.-+.-++.... +..+++.+-++-+++.|
T Consensus 188 n~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 188 NATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERFG 266 (327)
T ss_pred HhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhcc
Confidence 99999988764 223889999999998887766332222122111 111122333444443 77899999999999999
Q ss_pred ceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccch
Q 018663 270 PVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 270 ~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
+.+.++++.+.-++++.++.++++.++++.|++|..+++.|+.+=...++|
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999886665555
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.22 E-value=1.9e-10 Score=104.49 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~--~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (352)
.++....++++++|+...+..|...++ .+ +.....+++..+.++ +.+.....++. +..+.+++...+..|+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence 478899999999999999999998865 66 445555788888888 87776554432 223556777788888888
Q ss_pred -HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhh
Q 018663 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (352)
Q Consensus 82 -~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv 144 (352)
..++.+++.++++.+++.++.+.++.|+++.+++++++|||++.. ++.|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999 999999999886
No 33
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.21 E-value=1.6e-09 Score=97.45 Aligned_cols=222 Identities=13% Similarity=0.091 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
.+.+...++.|++...+|...+.++++.+++.+..+.. .+-+.+.+.+.++++|.-+..++ .....++++.++|+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999999999986 67788999999999998886610 0123366778888877
Q ss_pred hheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHH
Q 018663 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVAL 226 (352)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 226 (352)
....++++... ++......|....+++.++|..|.+..|-.. .++ ....+-+.+-..+-..+...
T Consensus 120 ts~~~~~~~~~------------~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~--~~~-~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 120 TSYQDKKSDKS------------SSKSNMKKGILALLISTIGYWIYSVIPKAFH--VSG-WSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred hcccccccccc------------ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCh-hHhHHHHHHHHHHHHHHHhh
Confidence 66433221110 1234567899999999999999999977633 333 44443332222222222222
Q ss_pred hhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchh----hhh
Q 018663 227 IAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLG----SVV 302 (352)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~----~~i 302 (352)
+.+.. ... ...|..+ ++-+.-.++..++..+.++.|.+..=.+..+.++++.+.+.+++||+=+.. .++
T Consensus 185 ~~~~~---~~~--k~~~~ni--l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~ 257 (269)
T PF06800_consen 185 FSKKP---FFE--KKSWKNI--LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLI 257 (269)
T ss_pred ccccc---ccc--cchHHhh--HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHH
Confidence 22111 111 1112222 222355678888999999999999999999999999999999999987755 457
Q ss_pred hHHHHHhhhhh
Q 018663 303 GATIVAFGFYS 313 (352)
Q Consensus 303 G~~lii~g~~l 313 (352)
|.+++++|.++
T Consensus 258 G~~Liv~G~il 268 (269)
T PF06800_consen 258 GLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhhhc
Confidence 88888888654
No 34
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.18 E-value=4e-10 Score=99.48 Aligned_cols=278 Identities=12% Similarity=0.112 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHhHhhhhhccCCC--------------CCCCHHHHHHHHH
Q 018663 18 VGSSTLNKAAMN---KGT----SDFVLIVYSNAFAAIFILLPSTFIYYRNRTR--------------PPLTVSIICKIFG 76 (352)
Q Consensus 18 g~~~~~~k~~~~---~~~----~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~--------------~~~~~~~~~~~~~ 76 (352)
+.+-++.|++-+ +|. .|+......++.-+++ +..+..++.|.... ++++. ..++.
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p---~lfl~ 91 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP---VLFLP 91 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc---ceecC
Confidence 345566777632 233 3666666677777777 77766665543220 12222 23444
Q ss_pred HHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccc
Q 018663 77 LGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV 156 (352)
Q Consensus 77 ~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~ 156 (352)
-+++...+..++|.|+++++++.-..+-...-+|+.+++--++|.+++.+ +|.|+....+|++.+...+ .+.+
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-~~~~ 164 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-VHLV 164 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-cccc
Confidence 66777888899999999999999999999999999999999999999999 9999999999998876432 1111
Q ss_pred cCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHHHHHHHhhcCC--CC
Q 018663 157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY-PEELMATFICCVFVTIQSTVVALIAERN--PN 233 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~ 233 (352)
+.+. .+......|+++.+.+-+..|+-.+..+|..++. .+|.....|..++|.+++..++..+..- .+
T Consensus 165 ~~p~---------~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~ 235 (372)
T KOG3912|consen 165 TDPY---------TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGD 235 (372)
T ss_pred cCCc---------cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCC
Confidence 1000 1235667899999999999999999988876653 3359999999999977766665433221 11
Q ss_pred ccccCCcc---hhh---------HHHHHHHHHHHHHHHHHH----HHhccCCceEEeeccchHHHHHHHHHHHHhCCccc
Q 018663 234 SWRLKPDT---ELI---------AIGCSAFFAVALRSLAHT----WACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLY 297 (352)
Q Consensus 234 ~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s 297 (352)
.++..+.. +|. ..++..+.+..++--+|+ .-.|..++++=.+.-.+...+-=+++.....|.+.
T Consensus 236 sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ 315 (372)
T KOG3912|consen 236 SFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFH 315 (372)
T ss_pred cCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHH
Confidence 22221111 111 112223333333333333 22455666666666667777666777777889999
Q ss_pred hhhhhhHHHHHhhhhhhh
Q 018663 298 LGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 298 ~~~~iG~~lii~g~~l~~ 315 (352)
..|+.|.++.+.|+.+++
T Consensus 316 llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 316 LLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999986
No 35
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.4e-10 Score=101.99 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=191.6
Q ss_pred HHHHHHHhcC---C-ChHHHHHHHHHHHHHHHHHhHhhhhhcc-CC--CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018663 22 TLNKAAMNKG---T-SDFVLIVYSNAFAAIFILLPSTFIYYRN-RT--RP--PLTVSIICKIFGLGLISCCVQTCLYVGI 92 (352)
Q Consensus 22 ~~~k~~~~~~---~-~~~~~~~~R~~~a~l~~l~~i~~~~~~~-~~--~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al 92 (352)
...|++++.. . .|..+.++.-+....+ .+.......+- .+ .+ +++.+..+......+...+.-.+-++.+
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceeh
Confidence 3567666431 2 3555666665555443 33332222211 01 02 2344444555555555555555667778
Q ss_pred cccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCC
Q 018663 93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ 172 (352)
Q Consensus 93 ~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
+|++++..-+=-++..+|+.+++++++|||-+.. ...+..+.+.|. +-|.+.+. ..+
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF-----~lGvdqE~------------~~~ 180 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGF-----GLGVDQEG------------STG 180 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehh-----eecccccc------------ccC
Confidence 9999999988889999999999999999999987 555444444443 32322111 224
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHHHHHHHhhcCCC--CccccC-CcchhhHHHH
Q 018663 173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNP--NSWRLK-PDTELIAIGC 248 (352)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~ 248 (352)
.....|.++++.|.++-|+..+..||...... .-...++|..+.+.++++|...+-++-. .+++.. ...-|..+..
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 55678999999999999999999997765443 3477899999999999999887543311 122222 2334666666
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhhcccc
Q 018663 249 SAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKMIDD 327 (352)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~~~~~ 327 (352)
.|+++-.++|.-. +=+|..+|.+-.+.....-..-.++++.+++|.-+...|-|-++++.|...+.+.|+++.+++.+
T Consensus 261 sglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~ 338 (347)
T KOG1442|consen 261 SGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASA 338 (347)
T ss_pred HHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhcc
Confidence 6765555544322 44788999999999999999999999999999999999999999999999999887766655433
No 36
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.07 E-value=1.2e-09 Score=101.52 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=110.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccc--cCCcchhhHHHHHHH
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR--LKPDTELIAIGCSAF 251 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 251 (352)
+..+|.++++.++++|+...+..|.. .+.++ .+..++++.++.+++.+......+ ..... ..+...+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~-~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPA-DEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 44589999999999999999999765 56664 999999999998877766543321 11100 0011222 2333566
Q ss_pred HHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 252 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
+..+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.+..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999988753
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.06 E-value=1.7e-10 Score=91.49 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhccCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHH
Q 018663 39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL 116 (352)
Q Consensus 39 ~~R~~~a~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~ 116 (352)
.+|+..+.++ +..+....++... .+..+++.+.+....|+++ ..++.++++|+++.+ +.++++.++.|+++.++++
T Consensus 2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 4788898888 7776655433211 0122224455667778888 699999999999999 5888999999999999999
Q ss_pred HHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 117 ~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
+++|||++.+ ++.++.++++|++++..
T Consensus 80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 80 LFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999998874
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.06 E-value=1.5e-09 Score=90.51 Aligned_cols=138 Identities=14% Similarity=0.187 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc------CChhhHHHHHHHHHHHHHHHHHHHhhcCCCC--ccc-cC------Ccch
Q 018663 178 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERNPN--SWR-LK------PDTE 242 (352)
Q Consensus 178 G~~~~l~aa~~~a~~~vl~k~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~-~~------~~~~ 242 (352)
|.++++.|.++.|+++++.|+..++ ..++.++..+....+.+++.+..++.|+... ... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999988665 3335999999999999999999887765421 111 00 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 243 LIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
+..++..++ .........+..+++.+|.+.++...+..+...+.+++++||++++.+++|.++.++|.+++++
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 333444443 4456666777899999999999999999999999999999999999999999999999988764
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.06 E-value=2.8e-09 Score=98.24 Aligned_cols=134 Identities=15% Similarity=0.098 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHH
Q 018663 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRS 258 (352)
Q Consensus 179 ~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
.++.+.++++||..++.+|+..++.+. ..++......+++.|...... ....|+..+.. +......+.......+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD---FLWWALLAHSVLLTPYGLWYL-AQVGWSRLPAT-FWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHHHHhc-ccCCCCCcchh-hHHHHHHHHHHHHHHH
Confidence 467899999999999999988776332 346666666777766655321 11334433322 3344445556788889
Q ss_pred HHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 259 LAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 259 ~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
.++++++++.+++.++.+.++.|+++.+++++++||+++..+++|.++++.|+.+....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887653
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.04 E-value=9.4e-10 Score=92.43 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCcc
Q 018663 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (352)
Q Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~ 155 (352)
...++....+..|..|++..++++++.+..+...|+.+++++.+|||+... ++...++++.|++++...++.
T Consensus 58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~-- 129 (290)
T KOG4314|consen 58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNE-- 129 (290)
T ss_pred ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccch--
Confidence 344555778999999999999999999999999999999999999999999 999999999999888743322
Q ss_pred ccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHH---HHHHHHH--HHHHHhhcC
Q 018663 156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICC---VFVTIQS--TVVALIAER 230 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~---~~~~v~~--~~~~~~~~~ 230 (352)
......|...++.|+...|+|.++-|+...+-+- -.....+. ++...+. .++.+.+.
T Consensus 130 ----------------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T- 191 (290)
T KOG4314|consen 130 ----------------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFT- 191 (290)
T ss_pred ----------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHh-
Confidence 3455689999999999999999999998765422 22222222 2222221 11111121
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhh
Q 018663 231 NPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFG 310 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g 310 (352)
...+|+......|..+...+....++ ..+-..++....|...|+-+.....-....+.++-+-..+.....|..+|..|
T Consensus 192 ~VE~~qsFA~~PWG~l~G~A~L~lAF-N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~ 270 (290)
T KOG4314|consen 192 GVEHLQSFAAAPWGCLCGAAGLSLAF-NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIG 270 (290)
T ss_pred chHHHHHHhhCCchhhhhHHHHHHHH-hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233321222366665544433222 23334677788899999999999999999999988888899999999999999
Q ss_pred hhhhhcccch
Q 018663 311 FYSVIWGQSE 320 (352)
Q Consensus 311 ~~l~~~~~~~ 320 (352)
..+......|
T Consensus 271 FiLiiiP~d~ 280 (290)
T KOG4314|consen 271 FILIIIPEDK 280 (290)
T ss_pred HHheecccch
Confidence 9888765433
No 41
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.04 E-value=1.9e-09 Score=92.31 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecC
Q 018663 73 KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (352)
Q Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~ 152 (352)
..+...++-...-.....+++|.++...++..+++.+..+..-..++|.|.+-. .....++.+...+.-. +.+
T Consensus 70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~-w~D 142 (309)
T COG5070 70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVAT-WGD 142 (309)
T ss_pred hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhc-cch
Confidence 334455555556667788999999999999999999999999999999999988 7777777766654333 211
Q ss_pred CccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHHHHHHhhcC
Q 018663 153 PALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAER 230 (352)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 230 (352)
.+... ........|++++..-++.-+.+....||..+ +..+ ...++|..+.+.++++...+++|+
T Consensus 143 ~q~~~------------~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~ed 209 (309)
T COG5070 143 QQASA------------FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFED 209 (309)
T ss_pred hhHHH------------HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhcc
Confidence 11000 11235667999999999999999888887654 3344 788999999999999999998875
Q ss_pred C-CCcccc-CCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 018663 231 N-PNSWRL-KPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 308 (352)
Q Consensus 231 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii 308 (352)
. +.+... .+.....++...|+ +++.-..+-.|+++..+.++-|+.+.+.-.-..+-|.+++||+.+...+....+-.
T Consensus 210 ws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGf 288 (309)
T COG5070 210 WSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGF 288 (309)
T ss_pred CCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHH
Confidence 3 222221 22223446666676 44444556679999999999999999999999999999999999999999988888
Q ss_pred hhhhhhhcccchhhhc
Q 018663 309 FGFYSVIWGQSEEEKM 324 (352)
Q Consensus 309 ~g~~l~~~~~~~~~~~ 324 (352)
.+..++...+.+|++.
T Consensus 289 lsg~iYavaks~k~q~ 304 (309)
T COG5070 289 LSGAIYAVAKSKKQQN 304 (309)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8878887766555443
No 42
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.04 E-value=7.7e-09 Score=91.37 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=161.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhh
Q 018663 64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYS-SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIA 142 (352)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~ 142 (352)
++.+.|++.. .....+..+.+-++++++- +...=.++-+-.++-+++++|+++|.|.+.+ |...+.+..+
T Consensus 60 ~kiplk~Y~i---~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAI---TVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhhe---ehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 4445544332 2333355666777788876 4445555666799999999999999999999 9999999999
Q ss_pred hhhhhheecCCcccc-CCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcC--ChhhHHHHHHHHHHHH
Q 018663 143 GALTVTLYKGPALVS-MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY--PEELMATFICCVFVTI 219 (352)
Q Consensus 143 Gv~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~--~~~~~~~~~~~~~~~v 219 (352)
|+++..+.+.++... .++.++.+ ..++...+..|..+...+-+..|.-.+.++...+++ + +-+..+|.-+...+
T Consensus 131 GiiIcTl~s~~d~~~~~~~l~~~~--~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP 207 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRSKLSGLDSGS--AQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLP 207 (330)
T ss_pred hheeEEeecCcchhhhhcccccCc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccc
Confidence 999988876655443 11111111 114456688999999889888888888887777665 3 36888898888877
Q ss_pred HHHHHHH--------hhcCCCCcccc---CCcchhhHHHHHHHHHHHHHHHHHHH----HhccCCceEEeeccchHHHHH
Q 018663 220 QSTVVAL--------IAERNPNSWRL---KPDTELIAIGCSAFFAVALRSLAHTW----ACHKKGPVYVSMYKPLGIVFA 284 (352)
Q Consensus 220 ~~~~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~s~~~~l~pv~~ 284 (352)
.++...- ....+....+. .-+..|..++ .+.+.+..=.+ .-.+..+.++++...+.-.++
T Consensus 208 ~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvS 282 (330)
T KOG1583|consen 208 LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVS 282 (330)
T ss_pred hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHH
Confidence 6665431 01101000000 1122333333 23333333333 345677888999999999999
Q ss_pred HHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 285 IIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 285 ~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
.+++.+.++.++++..|+|.++++.|..++.-.
T Consensus 283 Ll~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 283 LLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998643
No 43
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.01 E-value=6e-09 Score=96.68 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (352)
.+.++.++++++|+...+..|...++ .++....... +.+++. +.+....... . ...+...+...+..|++. ..
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~~~-~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAIGS-LIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH-HHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998755 7777765444 455555 6665544322 1 234445555567788888 89
Q ss_pred HHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
.+.+++.++++.+++.++.+.++.|+++.++++++++|+++.. +++|..+.+.|++......
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999 9999999999998886543
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.00 E-value=2.9e-09 Score=96.80 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCC---CccccCCcch-hhHHHHHHHH
Q 018663 177 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP---NSWRLKPDTE-LIAIGCSAFF 252 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ 252 (352)
+|..++++++++|+...+..|.. .+.++ .+..+++++++++++.+......+.. ..++...... +..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPA-TDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCH-HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence 58899999999999999999984 45665 99999999999888776654332110 1111111122 333444554
Q ss_pred HHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 253 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
..+..+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999987643
No 45
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.95 E-value=2.1e-07 Score=87.09 Aligned_cols=300 Identities=11% Similarity=0.029 Sum_probs=179.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHHHHHHHHh--HhhhhhccC--CCCCCCHHHHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYS-NAFAAIFILLP--STFIYYRNR--TRPPLTVSIICKIFGL 77 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R-~~~a~l~~l~~--i~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (352)
-+-+++..++++++||..++-.|. .+. .+ ++.-+.- ..++.+ +.| ...+.-+.. ...+.+.+.+...++.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~-wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKK-WS-WETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCC-Cc-hhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 456899999999999999999998 333 33 2221110 001111 111 011111110 0123456778888999
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhccc---ceeeccccceeehHHhhhhhhhhhheecCC
Q 018663 78 GLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (352)
Q Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~---~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~ 153 (352)
|++...++..++.++++.+++.+..+.. ++-+...++..++++|-. +.. ......+|+++.++|+++.... +.
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~A-g~ 156 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRA-GQ 156 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 9999999999999999999999998866 888999999999988754 211 1111667889999999887741 11
Q ss_pred ccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH-------HHHHhhhh-cCChhh--HHHHHHHHHHHHHHHH
Q 018663 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY-------IVQTSIIR-EYPEEL--MATFICCVFVTIQSTV 223 (352)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------vl~k~~~~-~~~~~~--~~~~~~~~~~~v~~~~ 223 (352)
..+.. + ++++ ..+....+|.++++.|.+.++.|+ ...+...+ ..+++. ...+..++.|..+.-.
T Consensus 157 ~k~~~-~-~~~~----~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~ 230 (345)
T PRK13499 157 LKERK-M-GIKK----AEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNL 230 (345)
T ss_pred hcccc-c-cccc----ccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11000 0 0000 123567899999999999999999 44433211 122211 1112222244433322
Q ss_pred -HHHh---hcCCCCccccCCc-----chhhHHHHHHHHHHHHHHHHHHHHhccCCceEEee----ccchHHHHHHHHHHH
Q 018663 224 -VALI---AERNPNSWRLKPD-----TELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSM----YKPLGIVFAIIMGVT 290 (352)
Q Consensus 224 -~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~----~~~l~pv~~~~~~~l 290 (352)
.... ..+..+....... .....+..++-+.=.++..+|..+-++.|....-+ .+.+..+++.+++.
T Consensus 231 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi- 309 (345)
T PRK13499 231 GFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL- 309 (345)
T ss_pred HHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-
Confidence 1111 1111111111110 11222333444455677778888888887665444 44888899999999
Q ss_pred HhCCccc------hhhhhhHHHHHhhhhhhhcc
Q 018663 291 LLGDTLY------LGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 291 ~l~E~~s------~~~~iG~~lii~g~~l~~~~ 317 (352)
++||.=+ ...++|.+++++|..+....
T Consensus 310 ~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 310 VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 5999755 56689999999999887654
No 46
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.94 E-value=7.8e-09 Score=83.45 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHH
Q 018663 177 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVAL 256 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
.|.++.+.+.++-+..+++-|+-.++.++ .+.... .. . ... .... ....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~~----~-~~~-~~~~-------------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-FI----A-ALL-AFGL-------------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-HH----H-HHH-HHhc-------------cHHHHHHHHHHHHH
Confidence 47889999999999999999998887654 332221 10 0 000 0000 12356788999999
Q ss_pred HHHHHHHHhccCCceEEeeccchHHHHHHHHHHH--HhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 257 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT--LLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 257 ~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l--~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
++.+|.+++++.+++.+..+..+.++...+.++. ++||++++.+++|.++|++|+++..+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999998888888888888875 89999999999999999999999876444
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=93.85 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (352)
.++.+..++++++|+......|.... .++.....+++..+.+. +.+.......... ...+.+.+......|+++ .
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHH
Confidence 35889999999999999999998643 33455667888888777 7766544322211 113456777888888888 8
Q ss_pred HHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
.++.+++.++++.++++++++..+.|+++.++++++++|+++.. +++|..+.+.|++++.
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999998775
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.85 E-value=4.3e-08 Score=93.11 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHhHhhhhhccC---CCCCCCHHHHHHHHHHHHHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNR---TRPPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~~~~~-~~~~~~R~~~a~l~~l~~i~~~~~~~~---~~~~~~~~~~~~~~~~g~~~ 81 (352)
+.++++.++++|+...++.|....+ .++ ....++...++.+. +.+......+.. +....+...+ ..+..|++.
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~-~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITLI-TIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHHH-HHHHHHHHH
Confidence 6688999999999999999988766 544 45555666666555 444333322211 1012232222 233344444
Q ss_pred HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecC
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~ 152 (352)
.+.+.++++++++.+++.+++..++.|+++.++++++++|++++. +++|.++.+.|+.+....+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence 678889999999999999999999999999999999999999999 99999999999988875443
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.83 E-value=3.2e-08 Score=91.88 Aligned_cols=132 Identities=16% Similarity=0.097 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (352)
.+.+++++++++|+...+..|...++ .++..... ..+.+. +.+...... ... ...+.+.+...+..|+....+
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~-l~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALA-LWIKYFLSP-QPA-MVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHH-HHHHHHHhc-Ccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999997644 77765432 233333 333222222 211 234556666666666544889
Q ss_pred HHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 85 ~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
+.+++.++++.+++.++.+.++.|+++.++++++++|+++.. +++|.++.+.|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999 99999999999877753
No 50
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.9e-08 Score=85.59 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 72 CKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
+.+...+.+-...+.+..-++.|.+--.-.+...+--+-+.+.+.++-+.|..+. ..++..+...|.++..+.+
T Consensus 107 rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLAD 180 (367)
T KOG1582|consen 107 RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLAD 180 (367)
T ss_pred hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcc
Confidence 3445555555677888888999998888778888877778889999999999999 9999999999999988765
Q ss_pred CCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHHHHHHhhcC
Q 018663 152 GPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAER 230 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 230 (352)
... .......|....-.|-++-|.---+++|..+.+++ ..++.++...+|.+.+...+..+++
T Consensus 181 s~~----------------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge 244 (367)
T KOG1582|consen 181 SQT----------------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE 244 (367)
T ss_pred ccc----------------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc
Confidence 432 12334578777777777778777777877776644 2667788889999988888777766
Q ss_pred CCCccccCCcchhhHHHHHH--HHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 018663 231 NPNSWRLKPDTELIAIGCSA--FFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 308 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii 308 (352)
-.+.|..-..+.+-...|.- -..+.++...-...++..|+..+..+....-.++++++++++..+++....-|+.+++
T Consensus 245 ~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~ 324 (367)
T KOG1582|consen 245 LFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVV 324 (367)
T ss_pred chhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHH
Confidence 56666542222232222111 1234455555566788899999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccc
Q 018663 309 FGFYSVIWGQS 319 (352)
Q Consensus 309 ~g~~l~~~~~~ 319 (352)
.|+++-...++
T Consensus 325 lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 325 LGIYLNMYSKR 335 (367)
T ss_pred HHHHhhcccCC
Confidence 99999877663
No 51
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.73 E-value=3.4e-08 Score=87.85 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=128.8
Q ss_pred cchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCCccc--------cCCCCCCCCCcc
Q 018663 97 PTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV--------SMSSSSNLHNEL 168 (352)
Q Consensus 97 ~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~--------~~~~~~~~~~~~ 168 (352)
........+..|+++++..+...++|.+.. ++.+.++...|++.-.+.+.+... ...+.++ ..+.
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~-~~~~ 76 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ-SSAK 76 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC-CCcc
Confidence 344556677888899999998889998877 888888888887643322110000 0000000 0000
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHH-HHHHHHHHHHHHHHHHHhhcCCC-CccccCCcchhhHH
Q 018663 169 RSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMA-TFICCVFVTIQSTVVALIAERNP-NSWRLKPDTELIAI 246 (352)
Q Consensus 169 ~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 246 (352)
.........|....+.+.++-++..+.+++..++.+..... .....+++.+.........+.+. .++.. ..++...
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 154 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGYPTA 154 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCCchH
Confidence 01112455677777788888888888888876654321111 11112222222121111111111 11110 1112223
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhh
Q 018663 247 GCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 314 (352)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~ 314 (352)
.+..++.++++..+..+.+|+.++...++...++++++.+++++++||+++..+++|..+++.|+.++
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33334567788888999999999999999999999999999999999999999999999999997653
No 52
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=2.7e-08 Score=78.75 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHH
Q 018663 212 ICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTL 291 (352)
Q Consensus 212 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~ 291 (352)
++..++.++...+.....+..+.++....+.+...+..|+.+...++.+|.++++..++ .++.+..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555543321122222222345556666776777999999999999995 88899999999999999999
Q ss_pred hCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 292 LGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 292 l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
++|+++..+++|.+++++|+.+..+.+-
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999988654
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.68 E-value=3.2e-07 Score=85.36 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHhHhhhhhccC----CCCCCCHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG 78 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~--~~~~~~~R~~~a~l~~l~~i~~~~~~~~----~~~~~~~~~~~~~~~~g 78 (352)
.+.++.++++++|+...+..|...++.-+ ......+-.+.+.+. +........... .....+.+.+...+..|
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 57889999999999999999987644222 223333333333333 322222222111 00234567788888899
Q ss_pred HHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 79 ~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
++. ...+.+++.++++.++++++.+..+.|+++.++++++++|+++.. +++|.++.++|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 998 899999999999999999999999999999999999999999999 9999999999997665
No 54
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.65 E-value=9.2e-07 Score=81.95 Aligned_cols=229 Identities=15% Similarity=0.200 Sum_probs=127.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 73 ~~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
.....|+.. ..+..+.+.|+.+.|.+..+.+..+.-++..+++..++|||++++ .+.|..+++.|..++....
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC
Confidence 334456665 778889999999999999999999999999999999999999999 9999999999998877543
Q ss_pred CCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH-------HHH
Q 018663 152 GPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQS-------TVV 224 (352)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~-------~~~ 224 (352)
.++.+.. + ..+-.+ .-.+............ +...+.....+|..++. . .........+|+... ..+
T Consensus 125 ~~~~~~~-t-~~~l~~--~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~~-i-~vyi~i~sl~Gs~tvl~~K~i~~~i 197 (300)
T PF05653_consen 125 PKEEPIH-T-LDELIA--LLSQPGFLVYFILVLV-LILILIFFIKPRYGRRN-I-LVYISICSLIGSFTVLSAKAISILI 197 (300)
T ss_pred CCCCCcC-C-HHHHHH--HhcCcceehhHHHHHH-HHHHHHHhhcchhcccc-e-EEEEEEeccccchhhhHHHHHHHHH
Confidence 2211100 0 000000 0000111112222222 22222222222222211 0 100111111111111 011
Q ss_pred HHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccch-HHHHHHHHHHHHhCCc--cch---
Q 018663 225 ALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL-GIVFAIIMGVTLLGDT--LYL--- 298 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l-~pv~~~~~~~l~l~E~--~s~--- 298 (352)
.....++ +.+.. +..|..++ ..+.+......+.++++++.+++.+....+. ....+++-+.++++|. .++
T Consensus 198 ~~~~~g~-~~f~~--~~~y~l~~-~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~ 273 (300)
T PF05653_consen 198 KLTFSGD-NQFTY--PLTYLLLL-VLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI 273 (300)
T ss_pred HHHhcCc-hhhhh--hHHHHHHH-HHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence 1111111 22221 11232222 2233445555556689999999987766554 4556677788888874 333
Q ss_pred -hhhhhHHHHHhhhhhhhccc
Q 018663 299 -GSVVGATIVAFGFYSVIWGQ 318 (352)
Q Consensus 299 -~~~iG~~lii~g~~l~~~~~ 318 (352)
....|..+++.|+.+....|
T Consensus 274 ~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 274 IGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHhhheeeccC
Confidence 44578888999998876543
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.64 E-value=4.3e-07 Score=75.59 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCC--------C--CCHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--------P--LTVS 69 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~------~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~--------~--~~~~ 69 (352)
|.++.+.+.++-+...+..|..+++ ..+++.+..+-...+.++ +++.....++....+ + .+.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence 4678899999999999999998866 589999999999999998 888877665433101 0 0235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
.+...+..|+++...+...+..++++++-..+++...-.+.+.++++++++|+++.. ++.|+.++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 567777788888999999999999999999999999999999999999999999999 99999999999854
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.58 E-value=1.8e-07 Score=87.05 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCC--------CCCHHH-HHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--------PLTVSI-ICK 73 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~-~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~--------~~~~~~-~~~ 73 (352)
..|.++.++++++|+...+..|...++ +.+|..+..+.+..+.+. +.|...........+ ...... +..
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 358889999999999999999998761 389999999999998888 888765433111000 001011 111
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 74 ~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
.+..+... ...+.+++.+++++++..+++.....|+++.++++++++|+++.. +++|..+.+.|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 22333322 344467778999999999999999999999999999999999999 99999999999977763
No 57
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.55 E-value=2e-08 Score=87.46 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (352)
..++.+++.++.||....++... |-+|.+-..-- .++++. +..+.++.. . |..+.+.+.--++.|.+..++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALi-faiiv~~~~-~---p~~T~~~~iv~~isG~~Ws~G 72 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALI-FAIIVFLFV-S---PELTLTIFIVGFISGAFWSFG 72 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHH-HHHHHheee-c---CccchhhHHHHHHhhhHhhhh
Confidence 45678899999999998876543 34454444333 333443 444333332 2 456667777888889888999
Q ss_pred HHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceee----hHHhhhhhhhhhheecCCccccCC
Q 018663 85 QTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSI----GTMVSIAGALTVTLYKGPALVSMS 159 (352)
Q Consensus 85 ~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~i----g~~l~~~Gv~ll~~~~~~~~~~~~ 159 (352)
|...+.|.++.+++.+..+.+ .+-+-+.+++.+.++|-.+.. +.+ ++++.++|+.+-...++ +..
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~~IlG~iAliliviG~~lTs~~~~-~nk--- 142 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------QIILGFIALILIVIGIYLTSKQDR-NNK--- 142 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------hHHHHHHHHHHHHHhheEeeeecc-ccc---
Confidence 999999999999999999977 788889999999999988766 433 44556666655442221 110
Q ss_pred CCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 018663 160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 239 (352)
++ ++.+..-+|....+.|.++|-.|.++.+...-+--+..--.+.-+..+++.+. . ...+.. . .
T Consensus 143 ----~~----~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~---~-~~~~~~-~---~ 206 (288)
T COG4975 143 ----EE----ENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG---F-FKMEKR-F---N 206 (288)
T ss_pred ----cc----cChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHh---h-cccccc-h---H
Confidence 00 23455778999999999999999999887764322224444555555544322 2 221111 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhh----hhHHHHHhhhhhhh
Q 018663 240 DTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSV----VGATIVAFGFYSVI 315 (352)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~----iG~~lii~g~~l~~ 315 (352)
+..|..+. -| +.=+++..++..+-++.|.++.=.+..+..+++.+-+.++++|+=+..++ +|.++++.|..+..
T Consensus 207 K~t~~nii-~G-~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 207 KYTWLNII-PG-LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHh-hH-HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 11122221 12 23356778888888999999988899999999999999999998886654 67788887776654
Q ss_pred c
Q 018663 316 W 316 (352)
Q Consensus 316 ~ 316 (352)
.
T Consensus 285 ~ 285 (288)
T COG4975 285 I 285 (288)
T ss_pred e
Confidence 3
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.42 E-value=8.2e-07 Score=69.89 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 249 SAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
.++.+.++++.++.+++++.+.+++-....+.++.+.+++++++||++++.+++|.+++++|+++...
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34467788999999999999999999999999999999999999999999999999999999987643
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.38 E-value=5.4e-06 Score=76.74 Aligned_cols=129 Identities=12% Similarity=-0.003 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH---HHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVL---IVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~---~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (352)
.|+.+..+++++.++......|.. + .+|... ..+-++++..+ +.+.. ++. + +. +.+.....+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~-~~~~~---~~~-~-~~-~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGII-FNLGH---ILA-K-PL-KKYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHH-HHHHH---hcc-c-ch-HHHHHHHHHHHHHH
Confidence 689999999999999999999975 3 788877 44444444444 33322 111 1 22 23444456668888
Q ss_pred HHHHHHHHHHhhc-ccCcchhhhhcchhHHHHHHHHHHHhhcccceeecccccee----ehHHhhhhhhhhhh
Q 018663 81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT 148 (352)
Q Consensus 81 ~~~~~~~~~~al~-~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~----ig~~l~~~Gv~ll~ 148 (352)
...++.+++.+.+ +.+++.++.+.+..|+...+++.+++||+.+.+ ++ +|.++.+.|+.++.
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 8888999999999 999999999999999999999999999999999 99 99999999987765
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.37 E-value=6.8e-06 Score=75.32 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~-~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (352)
..+..+.+.+.++|+...+..|... + .++..... +.+...... ..+. ..... . .+.+.+.+......|+++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~--~~~~~-~-~~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLF--FLSGF-G-APILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHH--Hhccc-c-ccCCHHHHHHHHHHHHHHH
Confidence 4688899999999999999999876 4 66766666 444422222 2222 11111 1 234557788888899998
Q ss_pred HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..++.+++.+++..+++..+.+..+.|++..++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999 9999999999987765
No 61
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.35 E-value=7.5e-06 Score=77.88 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHhHhhhhhccCC----------CCCCC
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----------RPPLT 67 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~------~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~----------~~~~~ 67 (352)
..|.++.++++++|+...+..|..+++ ..++.....+-...++++ ++|+......... .....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 458899999999999999999998854 145666666667788887 8877653321100 00111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 68 V-SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 68 ~-~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
. ..+...+..++.+...+.+.|.+++++++.+.++..++.|+++.++++++++|+++.. +++|.++.+.|+.+
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 1 1122223333333555555667999999999999999999999999999999999999 99999999999976
Q ss_pred hh
Q 018663 147 VT 148 (352)
Q Consensus 147 l~ 148 (352)
..
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 62
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.31 E-value=3.4e-06 Score=66.42 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 76 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..++++ ..+..++..++++.|.+.+..+.++.|+++.+++++++|||++++ +++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 344455 889999999999999999999999999999999999999999999 9999999999998775
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.25 E-value=7.6e-06 Score=73.57 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cCCcchhhHHHHHHHHH
Q 018663 175 WIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWR-LKPDTELIAIGCSAFFA 253 (352)
Q Consensus 175 ~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 253 (352)
...|.++++.|-+.|++.....|-+ +..++ .++..++.+.+.+....+...+.+...-+. ...+..+......++ -
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~-~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPA-TEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-L 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-H
Confidence 3479999999999999998887765 45565 899999999999988777665543222122 122334555544443 5
Q ss_pred HHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhccc
Q 018663 254 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 318 (352)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~ 318 (352)
....+..|.|+...-....+|.--++.|.+.+++|.++++|+++..|++...+-.+|+..-.+..
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999999999999999999999999999999998876544
No 64
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.19 E-value=2e-05 Score=63.60 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (352)
++++.+++..++-+...++.|..+++ .++...... . ...+. .. . .+ ...+..|++. ..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~---~~--------~-~p------~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL---AF--------G-LA------LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH---HH--------h-cc------HHHHHHHHHHHHH
Confidence 47888888889999999999999866 544332221 1 11111 00 0 11 1245667777 89
Q ss_pred HHHHHHHhhcccCcchhhhhcchhHHHHHHHHHH--HhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~--~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
+..++..+++..+.+.+..+.+..+.++.+.++. ++||++++. +++|+++.++|++++.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999899888885 899999999 9999999999998876
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.19 E-value=2.7e-05 Score=72.96 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=111.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCC-CCCCHHHHHHHHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-PPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 81 (352)
..+|.++++.+++++|.+.++-+..+++ .+...+..+--+.+.++ ..+...+.+++... -+.+.+....++..++..
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence 4688999999999999999999999977 88888887777777777 77766666554331 223445544444444444
Q ss_pred HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecC
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~ 152 (352)
+..+.+.-..+++++++...+=..++.+++.+...+++++++++. .++|.++.++|.++....+.
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEccCC
Confidence 666667778899999987777777899999999999999999999 99999999999988765443
No 66
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.09 E-value=3.7e-06 Score=74.31 Aligned_cols=137 Identities=14% Similarity=0.172 Sum_probs=97.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHH-HHHHHH
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAI-GCSAFF 252 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (352)
...+|..+...| ..+....++.++..++.| .+.....+++--++..|....... + .|-....+.|..+ .++|.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p--~e~a~~r~l~~mlit~pcliy~~~-~-v~gp~g~R~~LiLRg~mG~- 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLENDP--MELASFRLLVRMLITYPCLIYYMQ-P-VIGPEGKRKWLILRGFMGF- 108 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccCh--hHhhhhhhhhehhhhheEEEEEee-e-eecCCCcEEEEEeehhhhh-
Confidence 567888888888 788888888888887755 444444444333333333222111 1 1222223334322 34443
Q ss_pred HHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 253 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
.+.++.+|++++.+-+-++.+.+..|+++.+++|.+++|+.+....+|..+.+.|+++..+..-
T Consensus 109 ---tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 109 ---TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred ---hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 5566777889999999999999999999999999999999999999999999999999876543
No 67
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=2.3e-05 Score=71.29 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=128.6
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 73 ~~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
+....|++- ..+...-|.|+.+.|++..+.+..+.-+..++++..++|||+++. ..+|..++++|..+++...
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEec
Confidence 344567777 888999999999999999999999999999999999999999999 9999999999999888543
Q ss_pred CCccccCCCCCCC-CCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH-------HH
Q 018663 152 GPALVSMSSSSNL-HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQS-------TV 223 (352)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~-------~~ 223 (352)
.++.+.. +..| ... -.+..+ +.....+...++.= ....|+...+.+ ++.........|..-. ..
T Consensus 139 P~e~~i~--t~~el~~~--~~~~~F-liy~~~iil~~~il--~~~~~p~~g~tn-ilvyi~i~s~iGS~tV~svKalg~a 210 (335)
T KOG2922|consen 139 PKEQEIE--SVEEVWEL--ATEPGF-LVYVIIIILIVLIL--IFFYAPRYGQTN-ILVYIGICSLIGSLTVMSVKALGIA 210 (335)
T ss_pred Ccccccc--cHHHHHHH--hcCccH-HHHHHHHHHHHHHH--heeecccccccc-eeehhhHhhhhcceeeeeHHHHHHH
Confidence 2221110 0000 000 001111 11111111111111 111221111111 1222222222221110 00
Q ss_pred HHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccch-HHHHHHHHHHHHhCCccc-----
Q 018663 224 VALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPL-GIVFAIIMGVTLLGDTLY----- 297 (352)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l-~pv~~~~~~~l~l~E~~s----- 297 (352)
+-..+.+ .++...+ ..|..+.... .+........++|++..+++.++.+.+. -..++++-+.++++|.-.
T Consensus 211 iklt~~g-~~ql~~~--~ty~~~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~ 286 (335)
T KOG2922|consen 211 IKLTFSG-NNQLFYP--LTWIFLLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALD 286 (335)
T ss_pred HHHHhcC-CcccccH--HHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 1111221 1222221 2233333332 3445555556699999998887766554 455666778888887332
Q ss_pred -hhhhhhHHHHHhhhhhhhcc
Q 018663 298 -LGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 298 -~~~~iG~~lii~g~~l~~~~ 317 (352)
.....|+..++.|+.+....
T Consensus 287 i~~~~~Gf~ti~~G~flL~~~ 307 (335)
T KOG2922|consen 287 IAGELCGFVTIFLGIFLLHRT 307 (335)
T ss_pred HHHHHHhHHHhhheeeEeeee
Confidence 24568899999998887543
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.02 E-value=4.5e-05 Score=67.12 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (352)
-+..+.+.+..+|+..-+..|..-.. .+...-+..-+..++++ .+|+-.-.... .-++++.+...+..|+++ +.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhccc
Confidence 35678899999999999999987644 55556667788899998 89886543322 235667778888899999 99
Q ss_pred HHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
.+.+-..++...+...-+++.++.|.+..+.++++++|+++.. ||.++...+.++.-..+
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGSTL 282 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999 99999988887764443
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.00 E-value=1.4e-05 Score=63.41 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCceEEeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 249 SAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
..+...++++.++.+++|+++.+.+=.. .-+..+.+.+.+++++||++++.+++|..+|++|++..+...+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3455778999999999999998876444 4578888899999999999999999999999999988865443
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.74 E-value=0.00017 Score=56.51 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhccCCceEEeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhccc
Q 018663 250 AFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 318 (352)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~ 318 (352)
.+.+.++++.++..++|+++.+.+=.. .-+..+.+.+.+++++||++++.+++|..+|++|+++.+...
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 355678899999999999998775443 556778889999999999999999999999999999986543
No 71
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.66 E-value=0.00049 Score=64.10 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=93.5
Q ss_pred HHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccC
Q 018663 192 LYIVQTSIIREYP---EELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKK 268 (352)
Q Consensus 192 ~~vl~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (352)
+.+++++..++.. .+..+++.++.+..+...+.......+ ..+...+......+ +...++..+.+.+++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSRKIPLKKYAILS-FLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCCcChHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 4456666655431 257888998888888777665543311 11111233334444 36677788899999999
Q ss_pred CceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhh
Q 018663 269 GPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 269 ~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~ 323 (352)
+...-.+.....|+.++++++++++++.+..++++.+++.+|+.+....+.++.+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 9999999999999999999999999999999999999999999999876554443
No 72
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.53 E-value=0.0005 Score=62.19 Aligned_cols=115 Identities=10% Similarity=-0.045 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC 82 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (352)
..|+...+++.++.+.....+.|.. + .+++....-. .++.++--.++....+++ ..+ |...+-...|++..
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPq-aiGm~i~a~i~~~~~~~~----~~~-k~~~~nil~G~~w~ 206 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQ-AIGMLIGAFIFNLFSKKP----FFE-KKSWKNILTGLIWG 206 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHH-HHHHHHHHHHHhhccccc----ccc-cchHHhhHHHHHHH
Confidence 3578999999999999999998874 3 6666655433 233222022222222221 122 23356688899999
Q ss_pred HHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhccccee
Q 018663 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLR 126 (352)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~ 126 (352)
.++.+++.+.+..+.+.+-.+.++..+...+.+.+++|||-+.|
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 99999999999999999999999999999999999999999988
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.48 E-value=0.0014 Score=53.56 Aligned_cols=132 Identities=12% Similarity=0.092 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHH
Q 018663 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 257 (352)
Q Consensus 178 G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
..++++.++++-++-..+..++.++..+|...++..+..|++....+..+.++. ++...+...|+ .|+|-+...+.
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHH
Confidence 356788888888998888888888877569999999999999988887766543 33322222233 33344455666
Q ss_pred HHHHHHHhccCCceEEeecc-chHHHHHHHHHHH----HhCCccchhhhhhHHHHHhhhhh
Q 018663 258 SLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVT----LLGDTLYLGSVVGATIVAFGFYS 313 (352)
Q Consensus 258 ~~~~~~~l~~~~~~~~s~~~-~l~pv~~~~~~~l----~l~E~~s~~~~iG~~lii~g~~l 313 (352)
-.+..+..++.|++...... .-+-+.+.+++.+ .-++++++.+++|.+++++|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 77778889999988765554 4456667777775 23578999999999999999864
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.38 E-value=0.0003 Score=65.29 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=88.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHH
Q 018663 173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFF 252 (352)
Q Consensus 173 ~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (352)
.++.+|..+++.|+++.+....++|+...+.+. ...-.-. ...+......| +.|..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~-------------------~~~~~l~~~~W----~~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS-------------------GGRSYLRRPLW----WIGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc-------------------hhhHHHhhHHH----HHHHH
Confidence 356789999999999999999999987655332 0000000 00000000112 22333
Q ss_pred HHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 253 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
..+++..+.+.++...|++.++.+..+..++..+++..+++|+++...+.|+++++.|..+....
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 44566677888889999999999999999999999999999999999999999999999877654
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00061 Score=52.40 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhccCCceEE-eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 251 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
+++..++|.+...++|+++...+ ++-.-+..+.+.+.++++++|++++.+++|..++++|++..+..
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34667889999999999887664 45566777888999999999999999999999999999988764
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.25 E-value=0.0023 Score=49.90 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhccCCceEE-eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhh
Q 018663 251 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~ 315 (352)
+.+.++++.+...++|++|...+ ++-.-+..+.+.+.+++++||++++.+++|.++|+.|++..+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44667899999999999997764 444556777889999999999999999999999999998864
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.20 E-value=0.0021 Score=60.45 Aligned_cols=143 Identities=9% Similarity=0.020 Sum_probs=91.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHH--HHHHHHHHH-HHHHhhcCC-CCccccCCcchhhHHHHH
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFIC--CVFVTIQST-VVALIAERN-PNSWRLKPDTELIAIGCS 249 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (352)
....|.++.+++++||+-..+-+|| .++.+ .+.. |- .++.-++.. ..+.+..+. .......+...+ ...++
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~-~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTL-LPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHH-HHHHH
Confidence 4568999999999999999999988 66655 3433 32 111111111 011112222 112222222223 33334
Q ss_pred HHHHHHHHHHHHHHHhccCCceEE-eeccchHHHHHHHHHHHHhCCcc---c----hhhhhhHHHHHhhhhhhhcccchh
Q 018663 250 AFFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTL---Y----LGSVVGATIVAFGFYSVIWGQSEE 321 (352)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~~~~~~~l~l~E~~---s----~~~~iG~~lii~g~~l~~~~~~~~ 321 (352)
+-..=.++...+..++|+.|.+.. .+..-++-+.+.+++.+++||-. + ....+|.+++++|+.+..+.-.++
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444667899999999999997774 55567888899999999999865 2 346689999999999998844333
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.15 E-value=0.0025 Score=49.46 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhccCCceEE-eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 251 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
+.+.++++.+...++|++|...+ ++-.-+..+.+.+.+++++||++++.+++|..++++|++..+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 45678999999999999987764 4555577788899999999999999999999999999988754
No 79
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.05 E-value=0.0014 Score=51.24 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018663 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYV 90 (352)
Q Consensus 11 i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 90 (352)
++..++||.+.++.|.+... .++..-.. |..-. .. .+ + .++++... =.++-.+...|++
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~-~~-~L----l---------~n~~y~ip----f~lNq~GSv~f~~ 60 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQE-IK-FL----L---------LNPKYIIP----FLLNQSGSVLFFL 60 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHH-HH-HH----H---------HhHHHHHH----HHHHHHHHHHHHH
Confidence 45688999999999999755 44333322 32221 11 10 0 11122222 1223667788999
Q ss_pred hhcccCcchhhhhc-chhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhh
Q 018663 91 GIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 91 al~~~~~~~a~~l~-~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
.+...+.+.+..+. +++=++|++.++++.+|..+++ .++|+.+.++|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 99999999999996 5788899999988888888888 999999999998654
No 80
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.0079 Score=49.43 Aligned_cols=138 Identities=13% Similarity=0.081 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHH
Q 018663 177 IGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVAL 256 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
+..+.++.++++..+-.-...++.+...+|...++..+..|++.+..+..+.++ ...+.......|+.. .|-...++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~--~GG~lGa~ 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAW--IGGLLGAI 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHH--Hccchhhh
Confidence 567788889999999888888888888878999999999999999988887443 333332222223332 22223334
Q ss_pred HHHHHHHHhccCCceE-EeeccchHHHHHHHHHHHHhC----CccchhhhhhHHHHHhhhhhhhcc
Q 018663 257 RSLAHTWACHKKGPVY-VSMYKPLGIVFAIIMGVTLLG----DTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 257 ~~~~~~~~l~~~~~~~-~s~~~~l~pv~~~~~~~l~l~----E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
--........+.|++. ......-+-+.+.+.+-+=+. .+++...++|.+++++|+++..++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3445556778888665 444455566666777665333 588999999999999996555443
No 81
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.98 E-value=0.0027 Score=48.22 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhccCCceEE-eeccchHHHHHHHHHHHHhCCccchhhhhhHHHH
Q 018663 251 FFAVALRSLAHTWACHKKGPVYV-SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIV 307 (352)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~li 307 (352)
+.+.++++.++.+++|+.+.+.+ .+...+..+.+.+.+++++||++|+.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 44678999999999999998887 4556688899999999999999999999998875
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.93 E-value=0.0019 Score=60.04 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=110.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-hHhhhhhccCC---C-CCCCHHHHHHH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNRT---R-PPLTVSIICKI 74 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~---~~~~~~~~~~~R~~~a~l~~l~-~i~~~~~~~~~---~-~~~~~~~~~~~ 74 (352)
+..|.+..+.+.+..+.-.++.|..+. +..+++....+-.-++.+. ++ |.......... . ...+.+.+...
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhhHHHH
Confidence 567899999999999999999999994 3489999998888888887 77 76555433222 1 13344444444
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
+.. ++..+.|...|+.++++++-+-++....--..+...++++++|+.++. +..|..++++|+.+-.
T Consensus 240 ~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 444 667888999999999999999999998888888889999999999999 9999999999997654
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.90 E-value=0.0011 Score=59.77 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchh
Q 018663 254 VALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 321 (352)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~ 321 (352)
..+...+.+.++++.+|++..+......++++++++++++.+++..||++..+..+|+.+........
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 45667788899999999999999999999999999999999999999999999999999987765544
No 84
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.90 E-value=0.0084 Score=46.79 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhh
Q 018663 79 LISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
+....++.+...++++.|.+.+=.+-. .--+.+.+.+.+++||++++. ++.|+.+.+.|++.+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 333778889999999999998877755 777889999999999999999 999999999999775
No 85
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.78 E-value=0.0035 Score=49.11 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcccCcchhhhhc-chhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~-~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
..++.++..++++.|.+.+-.+- ..--+.+.+.+++++||++++. +++|+.+.++|++.+-+
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 77888889999999999888774 4777888999999999999999 99999999999988864
No 86
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.76 E-value=0.0026 Score=50.50 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcccCcchhhhhc-chhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhee
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~-~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~ 150 (352)
..+..++..++++.|.+.+-.+- ..--+.+.+.+.+++||++++. +++|+.+.++|++.+-..
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhcC
Confidence 88899999999999999988885 5888899999999999999999 999999999999888643
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.75 E-value=0.016 Score=47.43 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018663 7 TAVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (352)
Q Consensus 7 ~~~~i~~~~~wg~~~~~~k~~~~~~~~-~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (352)
.+..+++..+-+....++-.+.+. .+ |+.-.++-+..+.+. +..+....+++.. +..+ +.-++....|++++...
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~-~~p~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLS-SVPWWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhc-cCChHHhccHHHHHHHH
Confidence 456666777777777777666655 55 999999999999998 7776666555322 2221 22245566899999999
Q ss_pred HHHHHhhcccCcchhhhhcch-hHHHHHHHHHH----HhhcccceeeccccceeehHHhhhhhhhh
Q 018663 86 TCLYVGIGYSSPTLSSAIVDL-TPAFTFILALI----SRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 86 ~~~~~al~~~~~~~a~~l~~~-~Pi~t~ila~~----~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
.+..+.....+++.+..+.-+ +-+...++-++ .-|+|++++ +..|+++.++|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 999999999999988888664 55566666664 466888888 99999999999853
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.61 E-value=0.0049 Score=47.80 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..++.+...+++..|.+.+-.+-. .--+.+.+.+.+++||++++. ++.|+.+.++|++.+-
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 788899999999999998877755 778889999999999999999 9999999999998774
No 89
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0037 Score=48.13 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..++.+.-.++++.|.+.+=.+-. .-.+.+.+.+++++||+.+.. +++|+.+.++|++.+-
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 778889999999999998876644 778889999999999999999 9999999999998775
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.23 E-value=0.31 Score=45.52 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHh--hhhhccC--CCCCCCHHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPST--FIYYRNR--TRPPLTVSIICKIFGLGL 79 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~--~~~~~~~--~~~~~~~~~~~~~~~~g~ 79 (352)
+.+.+...++.++=|..++-.|..-+-....++++ ...++.+ ..|.. ++.-+.. .....+...+...+..|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 35677888888888888888887643323333333 2233333 33322 1111110 012334467788888999
Q ss_pred HHHHHHHHHHHhhcccCcchhhhh-cchhHHHHHHHHHHHhhcccc-eeeccccceeehHHhhhhhhhhhheecCCcccc
Q 018663 80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLD-LRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS 157 (352)
Q Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l-~~~~Pi~t~ila~~~l~ek~~-~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~ 157 (352)
+...+...|=.+++|++.+...-+ ..+...+-.++-.++.++--. ..+......++|++++++|+.+.... +...+.
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~Ke~ 160 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA-GSMKEK 160 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH-HHhhhh
Confidence 999999999999999988866554 335555555554554332100 00112223788999999999888632 221111
Q ss_pred CCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh------c--CCh---hhHHHHHHHHHHHHHHHHHHH
Q 018663 158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIR------E--YPE---ELMATFICCVFVTIQSTVVAL 226 (352)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~------~--~~~---~~~~~~~~~~~~~v~~~~~~~ 226 (352)
. ..++ ..+....+|.++++.|.+..|..++-...-.. + .++ ........+.-|.+.-++..+
T Consensus 161 -~--~~~~----~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~ 233 (344)
T PF06379_consen 161 -E--LGEE----AKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCL 233 (344)
T ss_pred -h--hccc----hhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHH
Confidence 0 0011 23456779999999999998888776532110 0 011 011223333344444444443
Q ss_pred hh---cCCC---CccccCCcc--hhhHHHHHHHHHHHHHHHHHHHHhccCCce----EEeeccchHHHHHHHHHHHHhCC
Q 018663 227 IA---ERNP---NSWRLKPDT--ELIAIGCSAFFAVALRSLAHTWACHKKGPV----YVSMYKPLGIVFAIIMGVTLLGD 294 (352)
Q Consensus 227 ~~---~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~s~~~~l~pv~~~~~~~l~l~E 294 (352)
.- .++. .+.+...+. ....+..++-.-=..++.+|-.+=.+.|+. --.+.+.+..+++-+++.+ ++|
T Consensus 234 ~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkE 312 (344)
T PF06379_consen 234 ILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKE 312 (344)
T ss_pred HHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 31 1111 111111111 122222223223345555566666666643 3446677888888888885 777
Q ss_pred ------ccchhhhhhHHHHHhhhhhhhc
Q 018663 295 ------TLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 295 ------~~s~~~~iG~~lii~g~~l~~~ 316 (352)
+.-...++|.++++.++.++-.
T Consensus 313 WKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 313 WKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred hccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 2334557888888888776643
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.04 E-value=0.026 Score=52.86 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=108.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHhHhhhhhccCC--CCCCCHHHHHHHHH
Q 018663 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIICKIFG 76 (352)
Q Consensus 2 ~~~~~~~~~i~~~~~wg~~~~~~k~~~~~~---~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~--~~~~~~~~~~~~~~ 76 (352)
|...|-++.+++++++|...++.|.-..+. ++--.+-.+--++..++ ++|..++...-.+ .+-.+..+....+.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 346788999999999999999999876442 56666666666777777 8866555433222 01112233445677
Q ss_pred HHHHH-HHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheec
Q 018663 77 LGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (352)
Q Consensus 77 ~g~~~-~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~ 151 (352)
.++++ +.+..+|.+|.-.+++-.+++=.+++-...++.-.++.+.++++. .++|.+..++|.+.+...+
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheeccc
Confidence 78888 999999999999999999999888766667777777878999999 9999999999988776443
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.0044 Score=54.65 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHH
Q 018663 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALR 257 (352)
Q Consensus 178 G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
+.+.+++=++.|+.......|.-.+ |.+=+.. +.+|++++.+..+++......+ ..+. ..+.+-..=.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~lG-tT~GALifaiiv~~~~~p~~T~-----~~~i-v~~isG~~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTLG-TTLGALIFAIIVFLFVSPELTL-----TIFI-VGFISGAFWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC---hhHhhhh-ccHHHHHHHHHHheeecCccch-----hhHH-HHHHhhhHhhhh
Confidence 4677888899999877776655433 2333233 3344444444444332111111 1122 223333345678
Q ss_pred HHHHHHHhccCCceEEeeccc-hHHHHHHHHHHHHhCCccchhhh-h---hHHHHHhhhhhhhcccc
Q 018663 258 SLAHTWACHKKGPVYVSMYKP-LGIVFAIIMGVTLLGDTLYLGSV-V---GATIVAFGFYSVIWGQS 319 (352)
Q Consensus 258 ~~~~~~~l~~~~~~~~s~~~~-l~pv~~~~~~~l~l~E~~s~~~~-i---G~~lii~g~~l~~~~~~ 319 (352)
+..++++++.+|.+++.-+.. .+-+-+.+++++.+||..++.++ + ..++++.|+++..++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999876654 56677789999999999987765 3 46778889888776544
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.84 E-value=0.13 Score=46.36 Aligned_cols=178 Identities=11% Similarity=-0.026 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018663 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (352)
Q Consensus 6 ~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (352)
++++.+++.+++|..++-.|.-- . -|++.+.++....-.+. -+.+..+... +++ ..+..+.|.+.+.++
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~-g~~v~~~~~~----p~f----~p~amlgG~lW~~gN 69 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLV-GLVVNLILGF----PPF----YPWAMLGGALWATGN 69 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHH-HHHHHHhcCC----Ccc----eeHHHhhhhhhhcCc
Confidence 46788999999999999999653 3 68888877766554444 4444333221 333 246677888889999
Q ss_pred HHHHHhhcccCcchhhhhcchhHHHHH-HHHHH-HhhcccceeeccccceeehHHhhhhhhhhhheecCCccccC-----
Q 018663 86 TCLYVGIGYSSPTLSSAIVDLTPAFTF-ILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM----- 158 (352)
Q Consensus 86 ~~~~~al~~~~~~~a~~l~~~~Pi~t~-ila~~-~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~~~~~~----- 158 (352)
.+..-.++..+.+....+-++.-..+. ..+++ +++++.... .......+|++++++|..+..+.+.+.....
T Consensus 70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~ 148 (254)
T PF07857_consen 70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE 148 (254)
T ss_pred eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence 999999999999999999886444433 33333 444333321 1223388899999999988876654331110
Q ss_pred ----CCCCCCCCc------cCC------CCCcchhHHHHHHHHHHHHHHHHHH
Q 018663 159 ----SSSSNLHNE------LRS------PQKNWIIGGLVLAAGSFFLSLLYIV 195 (352)
Q Consensus 159 ----~~~~~~~~~------~~~------~~~~~~~G~~~~l~aa~~~a~~~vl 195 (352)
.+++++..+ .++ ...+...|.++++.+++.|+...+=
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvP 201 (254)
T PF07857_consen 149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVP 201 (254)
T ss_pred cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccch
Confidence 011111000 001 1113567888888888888874433
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.76 E-value=0.019 Score=43.58 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcccCcchhhhhc-chhHHHHHHHHHHHhhcccceeeccccceeehHHh
Q 018663 81 SCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (352)
Q Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~-~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l 139 (352)
...+..++..++++.|.+.+-.+. .+..+.+.+.+.+++||++|+. ++.|+.+
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 378889999999999999996664 5899999999999999999999 9998865
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.49 E-value=0.049 Score=42.66 Aligned_cols=109 Identities=10% Similarity=-0.007 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 018663 184 AGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTW 263 (352)
Q Consensus 184 ~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (352)
+-+++|+..+.+.||-.+..+++-.. . +..-.... .+ .+|.. . .....+..+..+|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-----~n~~y--------~--ipf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-----LNPKY--------I--IPFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-----HhHHH--------H--HHHHHHHHHHHHHHH
Confidence 34788999999999988776542222 1 21111111 11 11211 1 133456678889999
Q ss_pred HhccCCceEEeecc-chHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhh
Q 018663 264 ACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 314 (352)
Q Consensus 264 ~l~~~~~~~~s~~~-~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~ 314 (352)
.+++.+-+.+..+. .+.=+++++.+++..+|..+...++|+++++.|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999998884 8999999999998888888899999999999998753
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.49 Score=44.23 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC-------CcchhhH
Q 018663 177 IGGLVLAAGSFFLSLLYIVQTSIIREYP---EELMATFICCVFVTIQSTVVALIAERN-PNSWRLK-------PDTELIA 245 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~vl~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-------~~~~~~~ 245 (352)
.=.+..+...+.++......|...+..+ .|.+..+..-++-.++.....+.-++. ...+... ...+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3445555566666666666665544321 136666777777666665555533211 0111110 1101111
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 246 IGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
...=+ +...+-.-+++.++++.+|++..+...+....++++.+++++++++..||....+...|+.+++..
T Consensus 95 ~~vPa-~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 95 VSVPA-LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHH-HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 11111 123344457789999999999999999999999999999999999999999999999999999843
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.85 E-value=0.075 Score=46.98 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhh
Q 018663 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (352)
Q Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ 145 (352)
...+..+..+.+..+-++|.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 334445778888999999999999999999999999999999999999999 9999999988764
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.46 Score=43.48 Aligned_cols=136 Identities=12% Similarity=0.081 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCC-----CCCHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-----PLTVSIICKIFGL 77 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~-~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~-----~~~~~~~~~~~~~ 77 (352)
..|+.++..-.++=|+....-...... .++++++++.-++..++. -.......+ ..+ + +..++.++-++..
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg-~~~-~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQG-HLL-PAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCC-CCc-hHHHHHHcChhHHHHHHHH
Confidence 355666666666666666666655543 489999999999998887 665533322 222 1 1234556777888
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
..+++.+|.+.|.-++.-++-.-+.+..+==++..+++.+.++.++++. +|.|+.+.+.|..+=.
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 9999998888775433
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.44 E-value=0.26 Score=44.42 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCcchh-----hHHHHHHH
Q 018663 178 GGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTEL-----IAIGCSAF 251 (352)
Q Consensus 178 G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~ 251 (352)
|.+.++.|+++++-..+=.||.... |. +....+++....+...++....+.. ...|-......| ...-..=.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g-Dg-~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG-DG-FFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC-Cc-HHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 5567788899999888887876644 33 6666666655555555444433211 111110000000 00111111
Q ss_pred HHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHH-HhCC---cc--chhhhhhHHHHHhhhhhhhcccch
Q 018663 252 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVT-LLGD---TL--YLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l-~l~E---~~--s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
++-++++..|. ..+-+.+-..+-+ ++|+ .+ .+..++|.+++++|..++..-|.+
T Consensus 79 iGLglg~liW~---------------s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 79 IGLGLGMLIWG---------------SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhhHHHHHHHH---------------HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 23344444442 2233333333322 3333 33 367889999999999888765443
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.014 Score=53.57 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=94.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHH
Q 018663 172 QKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAF 251 (352)
Q Consensus 172 ~~~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (352)
+.++.+|.++++.|.+..+...++.||..++... .. .-...+....... .+-+.|.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~--------------~ra~~gg~~yl~~------~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SG--------------LRAGEGGYGYLKE------PLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hc--------------ccccCCCcchhhh------HHHHHHH
Confidence 4567789999999999999999998887665221 00 0011111122111 1224556
Q ss_pred HHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhh
Q 018663 252 FAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~ 323 (352)
+..+++-.+.+.+....+++.++.+..+..+...+++..+++|.+++.-.+|+++.++|..+...+-.++++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 667777888888888899999999999999999999999999999999999999999998887765544443
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.37 E-value=0.79 Score=37.77 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC 83 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 83 (352)
....+..+.+..+-..-..++--+.+..-+|..-.+..+..+.++ +..+.+...+... .....+..++.+.-|++++.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccchhhh
Confidence 344555556666555555555555444235889999999998888 7776666332211 22223334577778888877
Q ss_pred HHHHHHHhhcccCcchhhhhc-chhHHHHHHHHHH-Hh---hcccceeeccccceeehHHhhhhhhhhh
Q 018663 84 VQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALI-SR---MEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 84 ~~~~~~~al~~~~~~~a~~l~-~~~Pi~t~ila~~-~l---~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
.-..........+++....+. .-+-+...++-.+ ++ +.+++.. ++.|+++.++|+.++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence 777777777777776665554 3455555555554 22 3566666 999999999995443
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=0.8 Score=42.26 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhHhhhhhccC----CCC-CCCHHHHHHHHHHH
Q 018663 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRP-PLTVSIICKIFGLG 78 (352)
Q Consensus 5 ~~~~~~i~~~~~wg~~~~~~k~~~~~-~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~----~~~-~~~~~~~~~~~~~g 78 (352)
.+|..+....+.-+......|.-.+. +.+.+.++++..+.+... +....+...... ..+ ..+...+....+.|
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 46777777777777777888877644 377888888998888776 655544433210 001 11234567778888
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
+++.+-+++.++-.++.++...++.....-..+.+...++.+++.++. ..+|+.+++.|.+.-.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 888888999999999999999999986666777777778888999999 9999999999987654
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.55 E-value=0.1 Score=44.68 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 257 RSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 257 ~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
+.+.|..++++++|+.++.+..-.-.+..+++|+.++|++....++..++-+.|+++..+.++
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 466788999999999999999999999999999999999999999999999999988876544
No 104
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.99 E-value=0.38 Score=42.44 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 69 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
..+..+...++.+++++.+.|.-..+-++-.-+++..+--+||.+.+.++++.+++.+ +|.|..+.+.|...
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhh
Confidence 3456777888888999999999999999999999999999999999999999999999 99999999888644
No 105
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.31 E-value=4.1 Score=37.57 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHhHhhhhhccCCC------CCC----CH
Q 018663 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPL----TV 68 (352)
Q Consensus 3 ~~~~~~~~i~~~~~wg~~~~~~k~~~~~~----~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~------~~~----~~ 68 (352)
+..|..+...+.++-|.-|.+.++.+... -+|+....--.-...+. ++|..+...+..+. +.+ -.
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~ 240 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLIL 240 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHH
Confidence 34678889999999999999999998652 24555554443344444 44444443322110 011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhh
Q 018663 69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 69 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
+....+...|...+..-.+-|.=+..+++-..++..---=+.+.+++....+|+++.. .|.|..++..|+..=
T Consensus 241 rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 3333444444444444445555566666666666666677889999999999999988 999999999998654
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.95 E-value=1.4 Score=41.16 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=86.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHH--hhcCCC-CccccCCcchhhHHHHHH
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVAL--IAERNP-NSWRLKPDTELIAIGCSA 250 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (352)
....|.++..+++++.+.+.+=.||. |+++ .+.......+-+-+..|... +.-++. .-....+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45689999999999999988888875 4444 44443333333333344432 222221 111222222333333333
Q ss_pred HHHHHHHHHHHHHHhccCCceE-EeeccchHHHHHHHHHHHHhCC-------ccchhhhhhHHHHHhhhhhhhcccchhh
Q 018663 251 FFAVALRSLAHTWACHKKGPVY-VSMYKPLGIVFAIIMGVTLLGD-------TLYLGSVVGATIVAFGFYSVIWGQSEEE 322 (352)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~-~s~~~~l~pv~~~~~~~l~l~E-------~~s~~~~iG~~lii~g~~l~~~~~~~~~ 322 (352)
+ -=+++-+.|-.++|++|.+- .++..-+.-+++.++--++.|+ +-....++|.++.++|+.+.-+.-.+|+
T Consensus 81 ~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 V-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred H-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 3 44567778888999999654 4555556666666665555432 2235678999999999999877544443
No 107
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=86.37 E-value=0.7 Score=42.36 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCC--------CCccccCCcchhhH--HHHHHHH
Q 018663 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN--------PNSWRLKPDTELIA--IGCSAFF 252 (352)
Q Consensus 183 l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~ 252 (352)
+++.+||+-....+|...++... .+...|=..++.++...+..++-+. ++-+.......|.. .++.|.+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 45778888888887776654432 2223333334444333333222111 11111111122332 3444555
Q ss_pred HHHHHHHHHHHHhccCCceEEeecc-chHHHHHHHHHHHHhCCccc--hhhhhhHHHHHhhhhhhh
Q 018663 253 AVALRSLAHTWACHKKGPVYVSMYK-PLGIVFAIIMGVTLLGDTLY--LGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~s~~~-~l~pv~~~~~~~l~l~E~~s--~~~~iG~~lii~g~~l~~ 315 (352)
.--++.++-.+++...|-+.+-.+. .+..++++.+.++ ++.+.+ ...+.|.+++++++.+-.
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 5567777888888777766544333 3344456666664 455554 245678888888877643
No 108
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=2.8 Score=38.06 Aligned_cols=143 Identities=18% Similarity=0.098 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhHhhhhhccC--C-CCCC-CHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR--T-RPPL-TVSIICKIFGLG 78 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~-~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~--~-~~~~-~~~~~~~~~~~g 78 (352)
..|.++-+.+.+.-+...+-.|..+.. +-..+.+.++....+.++ ++|...+.+.-. + .+++ ..+.|..+.+.|
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lL-flpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLL-FLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHH-HHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 467888899999999999999976644 223677888889998888 998876655311 1 1233 567788888888
Q ss_pred HHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhheecCC
Q 018663 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (352)
Q Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~~~~ 153 (352)
++|+.-+..-.+=++.++|-+--+=...-...=.+++..+.+|..+.. .|.+-++.++|...-...++.
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk~~ 331 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVKEH 331 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHHHH
Confidence 888555555555566665544333333444556678889999999998 999999999988777655543
No 109
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=83.83 E-value=3.3 Score=36.38 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHHHHHHhHhhhhhccCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhH
Q 018663 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP 108 (352)
Q Consensus 32 ~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~P 108 (352)
...+..+++..+++..+ +.........+.. ...++...+...++.|++.++-..+.-|-++.++++..+.+..+.-
T Consensus 183 f~d~dtmfYnNllslPi-L~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPI-LLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHH-HHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhh
Confidence 66788889999999888 7776655543321 1234445577888999988888888889999999999999999988
Q ss_pred HHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 109 i~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
....+.+.++++|+.++. .+..+.+++...++-.
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 888999999999999999 9999988877665544
No 110
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=83.57 E-value=18 Score=27.82 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHHHHHHHHHH
Q 018663 8 AVMVAVECLEVGSSTLNKAAMNKGTS------DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (352)
Q Consensus 8 ~~~i~~~~~wg~~~~~~k~~~~~~~~------~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (352)
..++...++||.+.++.|-.... .+ .....+.|-..... .+++++..+ . ++
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~tl~------------------l~w~Y~iPF-l---lN 62 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKTLF------------------LNWEYLIPF-L---LN 62 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHHHH------------------HhHHHHHHH-H---HH
Confidence 45778899999999999987532 22 22233333322211 122333322 1 23
Q ss_pred HHHHHHHHHhhcccCcchhhhhcc-hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~-~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
-.+..+||+-+++++-+.+..+.+ ++-.|+.+.+..+..|....+ .+.|..+.++|..+.+
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhee
Confidence 445667999999999999998877 577778888877655555555 7889999888876543
No 111
>PRK02237 hypothetical protein; Provisional
Probab=81.36 E-value=4.3 Score=31.33 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=40.0
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 274 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 274 s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
+.+.-...+.+.++++..-+++|+...++|.+++++|+.+..+.+|
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4566778888999999999999999999999999999988866554
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=81.04 E-value=1.7 Score=33.34 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHhCCccchhhhhhHHHHHhhhhhh
Q 018663 285 IIMGVTLLGDTLYLGSVVGATIVAFGFYSV 314 (352)
Q Consensus 285 ~~~~~l~l~E~~s~~~~iG~~lii~g~~l~ 314 (352)
+.+++++++|++.+.+..|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 566788999999999999999999987654
No 113
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=80.00 E-value=39 Score=32.24 Aligned_cols=16 Identities=0% Similarity=-0.220 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018663 209 ATFICCVFVTIQSTVV 224 (352)
Q Consensus 209 ~~~~~~~~~~v~~~~~ 224 (352)
++.+.+-+..+.++..
T Consensus 33 ls~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 33 LSKLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 114
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=77.47 E-value=1.8 Score=39.31 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 253 AVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
+-..+..+.+.++....++...+..-...+++.+++.-+++.+++..||+|...+.+|++.+-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 44455666677888888888889999999999999999999999999999999999999887543
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.22 E-value=5 Score=30.28 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 284 AIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 284 ~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
-+.+++++++|++.+.++.|.+++..|+++..+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 356799999999999999999999999887653
No 116
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=74.55 E-value=4.8 Score=32.61 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=8.6
Q ss_pred hhhhhHHHHHhhhhhh
Q 018663 299 GSVVGATIVAFGFYSV 314 (352)
Q Consensus 299 ~~~iG~~lii~g~~l~ 314 (352)
..++|..++..|++-.
T Consensus 88 ~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556666665544
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=74.33 E-value=4.8 Score=31.00 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=39.6
Q ss_pred eeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 274 SMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 274 s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
+.+.-...+.+.++++.+-+++|+...++|..++++|+.+..+.+|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3455667888999999999999999999999999999998877654
No 118
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=73.51 E-value=49 Score=33.34 Aligned_cols=37 Identities=3% Similarity=-0.091 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhh
Q 018663 279 LGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVI 315 (352)
Q Consensus 279 l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~ 315 (352)
..|+=+.++|.+.-.-.+.....++++.++++..+..
T Consensus 355 ~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 355 GMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555543222222233334444444444433
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.07 E-value=2.7 Score=33.38 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCccccccccc
Q 018663 338 PKAPLLQTKSIF 349 (352)
Q Consensus 338 ~~~~~~~~~~~~ 349 (352)
..+|+-.-+.||
T Consensus 108 ~~~p~~~~~~~~ 119 (122)
T PF01102_consen 108 TDVPLSSVEIEN 119 (122)
T ss_dssp ------------
T ss_pred CCCCcceeeecC
Confidence 344444444443
No 120
>PF15102 TMEM154: TMEM154 protein family
Probab=68.87 E-value=4.8 Score=32.89 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=12.2
Q ss_pred hhHHHHHhhhhhhhcccchhhhc
Q 018663 302 VGATIVAFGFYSVIWGQSEEEKM 324 (352)
Q Consensus 302 iG~~lii~g~~l~~~~~~~~~~~ 324 (352)
++.++++..+.++.+.|||+.|.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHheeEEeecccCC
Confidence 34444555556666665555543
No 121
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=66.10 E-value=15 Score=33.56 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcc-CCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhhhc
Q 018663 256 LRSLAHTWACHK-KGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEEKM 324 (352)
Q Consensus 256 ~~~~~~~~~l~~-~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 324 (352)
....+.+++++. ++.-.--++..-.++.+++++|++.|.+-+..|+....++-+|+++....+.++-+.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 345566777775 666677888999999999999999999999999999999999999988776554433
No 122
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=64.82 E-value=17 Score=28.00 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHHHHHHHHhccCCceEEeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhh
Q 018663 256 LRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSV 314 (352)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~s~~-~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~ 314 (352)
-+..+|++-+++.+-+.+.-+ +.+.-.++.+.+.....|...-..++|..++++|+.+.
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 345667788888887776554 45677888999997666667778889999999998875
No 123
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=64.68 E-value=1.5e+02 Score=29.33 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=20.9
Q ss_pred cchhhhhhHHHHHhhhhhhhcccchh
Q 018663 296 LYLGSVVGATIVAFGFYSVIWGQSEE 321 (352)
Q Consensus 296 ~s~~~~iG~~lii~g~~l~~~~~~~~ 321 (352)
++..|++...++++|++++.+.+|++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~ 279 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGR 279 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccC
Confidence 68899999999999998876654433
No 124
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=63.28 E-value=1e+02 Score=26.78 Aligned_cols=55 Identities=7% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhH---HHHHHHHHHHhhcccce
Q 018663 71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP---AFTFILALISRMEKLDL 125 (352)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~P---i~t~ila~~~l~ek~~~ 125 (352)
+++.+..++.........+......++...-.+....- -..++....++|.|.+.
T Consensus 146 ~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i 203 (206)
T PF06570_consen 146 WWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNI 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444545544444455555555566554433322211 12223334566666654
No 125
>PRK02237 hypothetical protein; Provisional
Probab=62.09 E-value=72 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 106 ~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
..-+...+..+..-++|++.. .++|..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 455556677888999999999 99999999999987764
No 126
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=59.71 E-value=7.2 Score=35.95 Aligned_cols=131 Identities=8% Similarity=-0.066 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHh-hhhhccC-----C------CCCCCHHHHHHHHHH
Q 018663 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPST-FIYYRNR-----T------RPPLTVSIICKIFGL 77 (352)
Q Consensus 10 ~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~-~~~~~~~-----~------~~~~~~~~~~~~~~~ 77 (352)
|+++.+|||.-....|++-..+--| +...+-+.++.++ ..++. +....-. . ..+-+++.+...+..
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL-~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLL-AALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHH-HHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHh
Confidence 4578899999999999987664322 2233444444333 32222 2221110 1 012355666777788
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhh
Q 018663 78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (352)
Q Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~l 146 (352)
|++..+++.+..+|+.+.+.+.+-++.....+.....--.++.+|.+.-. .-..|+.+.++.+++
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~----iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAE----ILFPGVACFLIAIIL 143 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCce----EEEccHHHHHHHHHH
Confidence 88878889999999999999988888765444444444455677776430 034466655555543
No 127
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=58.46 E-value=25 Score=32.07 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHHHHHHHhHhhhhhccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhhhcchh
Q 018663 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRT----RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (352)
Q Consensus 32 ~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~~~ 107 (352)
-+...++++...++..+ +++.+.....-.. -.+.++++....++.++.+.+++.+...=++.-++..++.+...-
T Consensus 218 ~ss~EmvfySy~iG~vf-lf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVF-LFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHH-HHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 44566666666666666 4443333221100 012345666666777776666666665556666888888888888
Q ss_pred HHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 108 Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
-..|.+++++++.++++.. ..++..+.+.|..+=.
T Consensus 297 KavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNM 331 (367)
T ss_pred hHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhc
Confidence 8899999999999999998 9999999999986654
No 128
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=56.35 E-value=8.6 Score=24.40 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=10.0
Q ss_pred cchhhhhhHHHHHhhhh
Q 018663 296 LYLGSVVGATIVAFGFY 312 (352)
Q Consensus 296 ~s~~~~iG~~lii~g~~ 312 (352)
|+|.+.+=.++|+.|+.
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45666666666666553
No 129
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=55.91 E-value=25 Score=27.01 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccCCceE----EeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccc
Q 018663 256 LRSLAHTWACHKKGPVY----VSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 256 ~~~~~~~~~l~~~~~~~----~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~ 319 (352)
++..+|-+.+...++.. -..+.-+..+.+.++.+..-+.+|+...++|.++.++|+.++...++
T Consensus 40 ~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 40 LSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 33344444445444442 24566778888999999999999999999999999999888776544
No 130
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.24 E-value=4.4 Score=36.77 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHH
Q 018663 172 QKNWIIGGLVLAAGS 186 (352)
Q Consensus 172 ~~~~~~G~~~~l~aa 186 (352)
+.....|.++.+++.
T Consensus 102 GQ~LF~Gi~~l~l~~ 116 (381)
T PF05297_consen 102 GQTLFVGIVILFLCC 116 (381)
T ss_dssp ---------------
T ss_pred ccHHHHHHHHHHHHH
Confidence 445557766554443
No 131
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=52.92 E-value=1.5e+02 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccchhhhhhHHHHH--hhhhhhhcc
Q 018663 285 IIMGVTLLGDTLYLGSVVGATIVA--FGFYSVIWG 317 (352)
Q Consensus 285 ~~~~~l~l~E~~s~~~~iG~~lii--~g~~l~~~~ 317 (352)
-.+|..++++..-+....|.++.+ +|.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445777777777777777766654 454444443
No 132
>PRK01637 hypothetical protein; Reviewed
Probab=52.80 E-value=86 Score=28.77 Aligned_cols=19 Identities=0% Similarity=-0.251 Sum_probs=9.8
Q ss_pred hhhhhhHHHHHhhhhhhhc
Q 018663 298 LGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 298 ~~~~iG~~lii~g~~l~~~ 316 (352)
|..+.+.++++.+-+-...
T Consensus 248 Wlyl~~~ilL~Gaelna~~ 266 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATL 266 (286)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566655555443333
No 133
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=51.40 E-value=96 Score=30.15 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHhhccc--ceeeccccceeehHHhhhhhhhhhhe
Q 018663 105 DLTPAFTFILALISRMEKL--DLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 105 ~~~Pi~t~ila~~~l~ek~--~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
...|-+..=+...++-+|+ +.| -++..+++.+|.+++.+
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~~R------i~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYWIR------ILICVALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccchHH------HHHHHHHHHHHHhheee
Confidence 4567666544443333344 455 77788888888877663
No 134
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=50.55 E-value=9.4 Score=31.11 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=27.4
Q ss_pred ccCCceEEeeccchHHHHHHHHHHHH-----hCCccchhhhhhHHHHHhhhhhhhcccch
Q 018663 266 HKKGPVYVSMYKPLGIVFAIIMGVTL-----LGDTLYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 266 ~~~~~~~~s~~~~l~pv~~~~~~~l~-----l~E~~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
..-+..+.+.+.|+.|.++.+++.+. ++|... .+.+.+....|.++.-+..||
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~--~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIV--IFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566677788777776554 444433 233344444555554433333
No 135
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=49.33 E-value=16 Score=30.66 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=6.2
Q ss_pred CCCCCCccccccc
Q 018663 335 SSSPKAPLLQTKS 347 (352)
Q Consensus 335 ~~~~~~~~~~~~~ 347 (352)
++.|-.|++|||.
T Consensus 137 ~~~Em~pL~~dde 149 (163)
T PF06679_consen 137 ENVEMAPLEEDDE 149 (163)
T ss_pred ccceecccCCCcc
Confidence 3445556644433
No 136
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=48.87 E-value=66 Score=24.19 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHhccCCceEEeeccchHHHHHHHHHHHH---hCCc-cchhhhhhHHHHHhhhhhhhcccchhhhc
Q 018663 262 TWACHKKGPVYVSMYKPLGIVFAIIMGVTL---LGDT-LYLGSVVGATIVAFGFYSVIWGQSEEEKM 324 (352)
Q Consensus 262 ~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~---l~E~-~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 324 (352)
..++++.+...--.+-.+..+++++++.+. -++. +-...|.|...=+.+.-+.....||.+++
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~ 88 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKY 88 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhc
Confidence 455666554455555555666666665542 3333 33445778877777777776655544443
No 137
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=48.01 E-value=31 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=9.0
Q ss_pred chhhhhhHHHHHhhhhh
Q 018663 297 YLGSVVGATIVAFGFYS 313 (352)
Q Consensus 297 s~~~~iG~~lii~g~~l 313 (352)
+|..++|.++..+.+.+
T Consensus 16 sW~~LVGVv~~al~~Sl 32 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSL 32 (102)
T ss_pred ccHhHHHHHHHHHHHHH
Confidence 45566666555544433
No 138
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=46.02 E-value=1.6e+02 Score=23.87 Aligned_cols=37 Identities=5% Similarity=0.022 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHhccCCceEEeeccch
Q 018663 243 LIAIGCSAFFAVALRS-LAHTWACHKKGPVYVSMYKPL 279 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~s~~~~l 279 (352)
+...+..+++.++++| .-=.+-++|.|=..+++.-..
T Consensus 30 f~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~ 67 (136)
T PF10710_consen 30 FGDILLISLVLTVVAYLIGDLFILPRTGNIVATIADFG 67 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHH
Confidence 4455566666777777 444566777776666655443
No 139
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=45.33 E-value=9.8 Score=30.18 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018663 245 AIGCSAFFAVALRSLA 260 (352)
Q Consensus 245 ~~~~~~~~~~~~~~~~ 260 (352)
.++..|+..+.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 3445566666666555
No 140
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=45.10 E-value=16 Score=28.12 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 106 ~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
..-+...+..+.+-|+|++.. .++|..++++|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 455666778888999999999 99999999999988774
No 141
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=43.42 E-value=2.9e+02 Score=26.12 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=9.0
Q ss_pred hhhhHHHHHhhhhhh
Q 018663 300 SVVGATIVAFGFYSV 314 (352)
Q Consensus 300 ~~iG~~lii~g~~l~ 314 (352)
..++.++.+.++.+.
T Consensus 372 f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 372 YLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665554
No 142
>PRK15049 L-asparagine permease; Provisional
Probab=43.36 E-value=1.9e+02 Score=28.83 Aligned_cols=7 Identities=29% Similarity=-0.040 Sum_probs=2.8
Q ss_pred hccccee
Q 018663 120 MEKLDLR 126 (352)
Q Consensus 120 ~ek~~~~ 126 (352)
.|--+.+
T Consensus 244 eE~knP~ 250 (499)
T PRK15049 244 GECKDPQ 250 (499)
T ss_pred HHhcChh
Confidence 3443433
No 143
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=43.14 E-value=1.3e+02 Score=30.11 Aligned_cols=35 Identities=17% Similarity=-0.105 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 018663 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFA 45 (352)
Q Consensus 7 ~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a 45 (352)
...+....++|+....+.-. . .+...+...|++.+
T Consensus 111 s~~l~~~~~~w~~~~~~~~~-~---~s~~~~ialr~llG 145 (495)
T KOG2533|consen 111 SKGLSVSGILWGLFGFLTAA-V---HSFPGLIALRFLLG 145 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H---hhhHHHHHHHHHHH
Confidence 34455666666666655554 2 34455555666655
No 144
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.85 E-value=19 Score=24.73 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=11.3
Q ss_pred HHHHHhhhhhhhcccchhhhc
Q 018663 304 ATIVAFGFYSVIWGQSEEEKM 324 (352)
Q Consensus 304 ~~lii~g~~l~~~~~~~~~~~ 324 (352)
..+++.|++....+++||...
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~ 38 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEF 38 (60)
T ss_pred HHHHHHHHHHHHhcccchhhH
Confidence 445556666666655554443
No 145
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=42.17 E-value=13 Score=32.55 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred EeeccchHHHHHHHHHHHHhCCccc-hhhhhh-HHHHHhhhhhhh
Q 018663 273 VSMYKPLGIVFAIIMGVTLLGDTLY-LGSVVG-ATIVAFGFYSVI 315 (352)
Q Consensus 273 ~s~~~~l~pv~~~~~~~l~l~E~~s-~~~~iG-~~lii~g~~l~~ 315 (352)
.+.+..+.|..+..++-.+-+-.+. ..+++| .+++..|..+..
T Consensus 36 ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 36 IAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 4444556777777777765543333 345555 566667877654
No 146
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=42.04 E-value=1.6e+02 Score=22.75 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHHH
Q 018663 181 VLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLA 260 (352)
Q Consensus 181 ~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (352)
.++.++++-.+...+++...+..+.....++..+..|+.++..+..........-..+.........++|-+++.-++..
T Consensus 4 v~lgg~~Ga~~R~~l~~~~~~~~~~~p~gt~~vN~~g~fllG~~~~~~~~~~~~~~~~~~~~~l~~Gf~G~lTTfSt~~~ 83 (117)
T PF02537_consen 4 VALGGALGALLRYGLSKLLNRRWGWFPWGTLLVNVLGCFLLGLLAGLLAKKLASKWSPSLRLFLGTGFCGGLTTFSTFIL 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHcchHHHHHHHHH
Confidence 34555555555555555554433222345566677777766655443221110101111122334445555555555555
Q ss_pred HHHHh
Q 018663 261 HTWAC 265 (352)
Q Consensus 261 ~~~~l 265 (352)
....+
T Consensus 84 e~~~l 88 (117)
T PF02537_consen 84 ETFQL 88 (117)
T ss_pred HHHHH
Confidence 54443
No 147
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=41.43 E-value=25 Score=24.62 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=15.3
Q ss_pred hhhhHHHHHhhhhhhhcccchhhh
Q 018663 300 SVVGATIVAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 300 ~~iG~~lii~g~~l~~~~~~~~~~ 323 (352)
.+++...+++|.+++....|++..
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456666677777777766555443
No 148
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=3.1e+02 Score=26.16 Aligned_cols=93 Identities=8% Similarity=0.053 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhH--H-HHHHHHHHHH
Q 018663 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIA--I-GCSAFFAVAL 256 (352)
Q Consensus 180 ~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 256 (352)
.+...+.+.-=++.++-|....+.+. .-+.+.....+.+.-+.+++++... .|.....+.|.. + ..+++ ....
T Consensus 53 vvVqla~lgpLi~tllhk~~~~~i~~-VPiif~ll~~a~v~~l~laflW~~t--s~V~g~~hS~afl~L~F~LAi-vdc~ 128 (439)
T KOG4255|consen 53 VVVQLANLGPLIVTLLHKGAPGTIPT-VPIIFVLLLLACVCQLGLAFLWHDT--SPVFGALHSWAFLSLLFGLAI-VDCT 128 (439)
T ss_pred HHHHHHcchhHHHHHHHhhCCCcCCC-CCchhHHHHHHHHHHHHHHHHHhcc--hhhhcCcchHHHHHHHHHHHH-HHhh
Confidence 44455666666777776555444443 6667777777788777777765532 233333333332 2 23333 5556
Q ss_pred HHHHHHHHhccCCceEEeec
Q 018663 257 RSLAHTWACHKKGPVYVSMY 276 (352)
Q Consensus 257 ~~~~~~~~l~~~~~~~~s~~ 276 (352)
+...+.=-+.+.+|...+.+
T Consensus 129 SnVtFLPFMs~lpp~fL~af 148 (439)
T KOG4255|consen 129 SNVTFLPFMSQLPPAFLNAF 148 (439)
T ss_pred ccchhhhhhhhCChHHHHHH
Confidence 66666666777777665544
No 149
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=40.55 E-value=4.6e+02 Score=27.53 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHHHHH-HHHHHHHH-HHHHHHHHHhhcccC
Q 018663 20 SSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICK-IFGLGLIS-CCVQTCLYVGIGYSS 96 (352)
Q Consensus 20 ~~~~~k~~~~~~-~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~al~~~~ 96 (352)
...+.|++.++| .+|..=+..-...+..+ ...-. +.+||++ +.... +...|+.. .+....-+.=++..|
T Consensus 18 ~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l-~~~g~-~l~~k~~------~~~~~~L~g~G~a~ly~t~~aa~~~y~l~~ 89 (745)
T PF10101_consen 18 VVFLLKYAIDAGWLGPAVRVALGAALGLAL-LAAGE-RLRRKGY------RAFAQALAGGGIAVLYLTVFAAYHLYGLIP 89 (745)
T ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHHH-HHHHH-HHHHccc------chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345779998877 67765555555554444 33322 2222211 11122 22223222 344444444467778
Q ss_pred cchhhhhcchhHHHHHHHHHHHhhc
Q 018663 97 PTLSSAIVDLTPAFTFILALISRME 121 (352)
Q Consensus 97 ~~~a~~l~~~~Pi~t~ila~~~l~e 121 (352)
+..+-++.......+..++...-+|
T Consensus 90 ~~~af~~~~~v~~~~~~la~r~~~~ 114 (745)
T PF10101_consen 90 PPVAFALLALVTAAAVALALRYDSP 114 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 8877777777666666666655444
No 150
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=40.11 E-value=16 Score=27.29 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=13.7
Q ss_pred chhhhhhHHHHHhhhhhhhc
Q 018663 297 YLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 297 s~~~~iG~~lii~g~~l~~~ 316 (352)
+...++|..+.++|..+...
T Consensus 3 N~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34567788888877777643
No 151
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=39.91 E-value=2.9e+02 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.727 Sum_probs=18.9
Q ss_pred cchhhhhhHHHHHhhhhhhhcc
Q 018663 296 LYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 296 ~s~~~~iG~~lii~g~~l~~~~ 317 (352)
++..|+++..+++.|+.+..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999877654
No 152
>PRK11010 ampG muropeptide transporter; Validated
Probab=39.03 E-value=3.9e+02 Score=26.37 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=10.4
Q ss_pred hhhhhHHHHHhhhhhhhcc
Q 018663 299 GSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 299 ~~~iG~~lii~g~~l~~~~ 317 (352)
...+..++.+.|+.+..+.
T Consensus 384 ~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666555443
No 153
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=38.06 E-value=21 Score=22.30 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=11.7
Q ss_pred hhHHHHHhhhhhhhcccch
Q 018663 302 VGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 302 iG~~lii~g~~l~~~~~~~ 320 (352)
+|.++++++..++.|++|+
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3556666677777665554
No 154
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=36.27 E-value=23 Score=32.48 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=19.9
Q ss_pred cchhhhhhHHHHHhhhhhhhcccch
Q 018663 296 LYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 296 ~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
+|..|++...++++|+.+..+.+||
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~~ 270 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYKL 270 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999998877654443
No 155
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=35.57 E-value=46 Score=30.17 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCHHH-HHHHHHHHHHHH
Q 018663 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSI-ICKIFGLGLISC 82 (352)
Q Consensus 4 ~~~~~~~i~~~~~wg~~~~~~k~~~~~~~~~~~~~~~R~~~a~l~~l~~i~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 82 (352)
.++..++++++.+++.+.+.--...+. .|-..+..+-.++++++ -..- .+..+.+. ..+.|.. ...++...+..+
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaII-saIQ-~i~~~~~~-~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAII-SAIQ-FIFERHHV-STLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHH-HHHH-Hhhhccce-eeEeehHHHHHHHHHHHHHH
Confidence 356677788888899999888888877 88888888888888776 5543 34444333 3333321 222222222223
Q ss_pred HHHHHHHHhhcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhh
Q 018663 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 83 ~~~~~~~~al~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
+...+.=.=++..+++...+=.-++-.|..+. ..++-+.+|. -.++......|.++-
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 33333334445555554433333455566555 5556678888 888888888887554
No 156
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=32.35 E-value=3.9e+02 Score=24.32 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhhc
Q 018663 188 FLSLLYIVQTSIIRE 202 (352)
Q Consensus 188 ~~a~~~vl~k~~~~~ 202 (352)
.+.+......++..+
T Consensus 42 ~~~~~~~~~g~l~dr 56 (379)
T TIGR00881 42 AYGISKFVMGSVSDR 56 (379)
T ss_pred HHHhhhhhhhHHHHh
Confidence 333333333333333
No 157
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=31.94 E-value=1.7e+02 Score=22.58 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcccceeeccccceeehHHhhhhhhh
Q 018663 109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (352)
Q Consensus 109 i~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ 145 (352)
..-..++.+++||++++. .++|..+.+.++.
T Consensus 74 ~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~ 104 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWN------YLWAFLCILGAVY 104 (108)
T ss_pred heeHHHHHHHhCCCccHH------HHHHHHHHHHhhh
Confidence 344567788999999999 9998887766554
No 158
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.66 E-value=16 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=14.0
Q ss_pred eEEeeccchHHHHHHHHHHHH
Q 018663 271 VYVSMYKPLGIVFAIIMGVTL 291 (352)
Q Consensus 271 ~~~s~~~~l~pv~~~~~~~l~ 291 (352)
.+++.+.|+-|+++++.+.++
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788887777654
No 159
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=31.64 E-value=5.4e+02 Score=25.71 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHH
Q 018663 206 ELMATFICCVFVTIQ 220 (352)
Q Consensus 206 ~~~~~~~~~~~~~v~ 220 (352)
|......+..+..++
T Consensus 331 P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 331 PVPLVIIQGIITSIA 345 (507)
T ss_pred cHHHHHHHHHHHHHH
Confidence 455555655555443
No 160
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.50 E-value=34 Score=26.23 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 106 ~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
..-+...+..++.=|.|+++. .++|..++++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 445566667778888999999 99999999999877764
No 161
>PHA03049 IMV membrane protein; Provisional
Probab=30.64 E-value=41 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=13.2
Q ss_pred hhhHHHHHhhhhhhhcccchhh
Q 018663 301 VVGATIVAFGFYSVIWGQSEEE 322 (352)
Q Consensus 301 ~iG~~lii~g~~l~~~~~~~~~ 322 (352)
+++...+++|.+++-..+|+++
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 4555566677777766555443
No 162
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.52 E-value=37 Score=25.08 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=21.4
Q ss_pred CccchhhhhhHHHHHhhhhhhhcccch
Q 018663 294 DTLYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 294 E~~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
-..++..++|.++++.|..++..+..|
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356889999999999999998754333
No 163
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=30.48 E-value=6.2e+02 Score=26.10 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=8.8
Q ss_pred hhHHHHHhhhhhhhcc
Q 018663 302 VGATIVAFGFYSVIWG 317 (352)
Q Consensus 302 iG~~lii~g~~l~~~~ 317 (352)
.|.+-++++..+-..+
T Consensus 542 FG~vaiiaa~fl~d~~ 557 (599)
T PF06609_consen 542 FGVVAIIAALFLGDID 557 (599)
T ss_pred HHHHHHHHHHHcCChH
Confidence 4666666665554333
No 164
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=29.34 E-value=5.4e+02 Score=25.07 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=19.7
Q ss_pred HHHHHHHhCCccchhh--hhhHHHHHhhhhhhhcccch
Q 018663 285 IIMGVTLLGDTLYLGS--VVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 285 ~~~~~l~l~E~~s~~~--~iG~~lii~g~~l~~~~~~~ 320 (352)
++.-..+=+++-+... .++.+++++.++++...+|+
T Consensus 169 i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l 206 (406)
T KOG1479|consen 169 ILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKL 206 (406)
T ss_pred HHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333445544333 45677777888888744333
No 165
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=27.94 E-value=71 Score=28.97 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 018663 284 AIIMGVTLL 292 (352)
Q Consensus 284 ~~~~~~l~l 292 (352)
..+++.++-
T Consensus 200 ~~iiaAiiT 208 (258)
T PRK10921 200 AFVVGMLLT 208 (258)
T ss_pred HHHHHHHcC
Confidence 344455444
No 166
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.83 E-value=70 Score=18.60 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.4
Q ss_pred chhhhhhHHHHHhh
Q 018663 297 YLGSVVGATIVAFG 310 (352)
Q Consensus 297 s~~~~iG~~lii~g 310 (352)
++..++|.+++..+
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666444443
No 167
>PRK11469 hypothetical protein; Provisional
Probab=26.50 E-value=28 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=26.1
Q ss_pred ccchHHHHHHHHHHHHhCCccchhhhhhH-HHHHhhhhhhh
Q 018663 276 YKPLGIVFAIIMGVTLLGDTLYLGSVVGA-TIVAFGFYSVI 315 (352)
Q Consensus 276 ~~~l~pv~~~~~~~l~l~E~~s~~~~iG~-~lii~g~~l~~ 315 (352)
+..+.|..+...+-.+-+-.....+|+|. +++..|..+..
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888887665554446667774 45556776653
No 168
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=25.80 E-value=42 Score=29.32 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=32.4
Q ss_pred hCCccchhhhhhHHHHHhhhhhhhcccchhhh---------cccc--------ccCCCcCCCCCCCcccccccc
Q 018663 292 LGDTLYLGSVVGATIVAFGFYSVIWGQSEEEK---------MIDD--------KDIDSLKSSSPKAPLLQTKSI 348 (352)
Q Consensus 292 l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~~~~~~ 348 (352)
..|+-...+=+|+..--+++++-+++.|.+++ ++++ ...++|||+++..|++.|.++
T Consensus 194 G~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAaEmasakkkqds~ae~~~gg~~~eeeDDeYNkPLDPnSDD 267 (288)
T KOG0847|consen 194 GADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAAEMASAKKKQDSGAERGAGGAPSEEEDDEYNKPLDPNSDD 267 (288)
T ss_pred chhHHHhhccccccHHHHHHHHhcchhhhhhhhccchhhccccCCCcccccccCCCccccccccCCCCCCCcch
Confidence 33444455556777888888877665332211 1111 123566777788888766554
No 169
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=53 Score=24.93 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhh
Q 018663 110 FTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (352)
Q Consensus 110 ~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll 147 (352)
.-..++.+.+||++.|. .+++..+...|+..+
T Consensus 82 iFv~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 82 IFVPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 34567889999999999 999888776666543
No 170
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.27 E-value=2.1e+02 Score=22.22 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCC-ccchhhhhhHHHHHhhhhhhhc
Q 018663 281 IVFAIIMGVTLLGD-TLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 281 pv~~~~~~~l~l~E-~~s~~~~iG~~lii~g~~l~~~ 316 (352)
.++++.++|+.=+- .-+|.-++..+++-.|.-+.+.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45666677754221 1233444444444444334333
No 171
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=25.13 E-value=5.5e+02 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=5.7
Q ss_pred hhHHHHHhhhhhh
Q 018663 302 VGATIVAFGFYSV 314 (352)
Q Consensus 302 iG~~lii~g~~l~ 314 (352)
.|.+.++.++...
T Consensus 418 ~~~~~~i~~~~~~ 430 (476)
T PLN00028 418 MGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 172
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.81 E-value=3.5e+02 Score=26.61 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHH-hCCccchhhhhhHHHHHhhhhhhhcccch
Q 018663 277 KPLGIVFAIIMGVTL-LGDTLYLGSVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 277 ~~l~pv~~~~~~~l~-l~E~~s~~~~iG~~lii~g~~l~~~~~~~ 320 (352)
....|+++.++..+. ....+ .....|.+++++|+.++.+.+++
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 395 ALIVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555544333 33322 34567888889998887764443
No 173
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.67 E-value=83 Score=20.75 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=4.5
Q ss_pred Hhhhhhhhccc
Q 018663 308 AFGFYSVIWGQ 318 (352)
Q Consensus 308 i~g~~l~~~~~ 318 (352)
+.|+.+....|
T Consensus 15 lLg~~I~~~~K 25 (50)
T PF12606_consen 15 LLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHhh
Confidence 34444444433
No 174
>PF15345 TMEM51: Transmembrane protein 51
Probab=23.27 E-value=73 Score=28.23 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=14.5
Q ss_pred hhHHHHHhhhhhhhcccchhhhccc
Q 018663 302 VGATIVAFGFYSVIWGQSEEEKMID 326 (352)
Q Consensus 302 iG~~lii~g~~l~~~~~~~~~~~~~ 326 (352)
.|.++.++++-+-.+.|||++...+
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3566666666666666665544433
No 175
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=22.28 E-value=2.1e+02 Score=26.51 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCc
Q 018663 208 MATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGP 270 (352)
Q Consensus 208 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (352)
..+....-.++++.++.++...++ +.+....+.+..-.+.+.++..+.++-+-......-.|-
T Consensus 121 ~~tlv~lgig~i~Ali~a~~itk~~~~~~~~e~~Rll~~vG~a~iLPQlLAaLG~vF~~AGVG~ 184 (308)
T PF06166_consen 121 NGTLVGLGIGAIVALIVALIITKPKPKQPLKESRRLLDQVGWAAILPQLLAALGAVFTAAGVGD 184 (308)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCccH
Confidence 444555566666666666554333 222222233334455555555665555554444444443
No 176
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.04 E-value=32 Score=28.53 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=9.9
Q ss_pred EeeccchHHHHHHHHHHH
Q 018663 273 VSMYKPLGIVFAIIMGVT 290 (352)
Q Consensus 273 ~s~~~~l~pv~~~~~~~l 290 (352)
++.+.|+.|+++++.+..
T Consensus 77 aa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666665543
No 177
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=21.66 E-value=2.8e+02 Score=19.14 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018663 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIRE 202 (352)
Q Consensus 174 ~~~~G~~~~l~aa~~~a~~~vl~k~~~~~ 202 (352)
....+..+.+.+.+|+.+++....+..++
T Consensus 3 ~~~l~~~~~llg~~~l~i~~~~~syVd~~ 31 (63)
T PF13127_consen 3 KYILSLILLLLGVVCLFIFNIIGSYVDED 31 (63)
T ss_pred chHHHHHHHHHHHHHHHHHhcccceECCC
Confidence 34567788888888888888876666554
No 178
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=21.65 E-value=7.5e+02 Score=24.04 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=28.5
Q ss_pred hcccCcchhhhhcchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhh
Q 018663 92 IGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (352)
Q Consensus 92 l~~~~~~~a~~l~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~ 148 (352)
+.+.+-+-..++....-......++.+ ++|..+.+......--...+.++|..++-
T Consensus 152 lG~~DfAG~~vVH~~gG~~~L~~a~~L-GpR~~r~~~~~~~~~~n~~~~~lGt~lLw 207 (403)
T TIGR00836 152 LGVLDFAGGGVVHIVGGVAGLAAALVL-GPRIGRFPRPVAIRPHNVPLVVLGTFILW 207 (403)
T ss_pred cCcchhcCceeEecchhHHHHHHHHHh-cCCCCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 445566666677776666666666655 43332210000001224556667765553
No 179
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=21.50 E-value=2.3e+02 Score=26.32 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=25.5
Q ss_pred eeehHHhhhhhhhhhheecCCccccCCCCCCCCCccCCCCCcchhHHHHHHHHHHHHHH
Q 018663 133 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSL 191 (352)
Q Consensus 133 ~~ig~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~ 191 (352)
.+.|..++..|+.... ..-+. ........|.++..++.+.+..
T Consensus 6 ~~f~~~mGtg~l~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLL-YLLPY---------------HFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGGHHHHHHHHHHHHH-HTTTT---------------TSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH---------------hccchhHHHHHHHHHHHHHHHH
Confidence 6778888887776664 21111 1234455677777666666666
No 180
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.39 E-value=32 Score=22.10 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHhhhhhhhcccchhhhcc
Q 018663 298 LGSVVGATIVAFGFYSVIWGQSEEEKMI 325 (352)
Q Consensus 298 ~~~~iG~~lii~g~~l~~~~~~~~~~~~ 325 (352)
|..+.-+++++++.++..+.++|+..++
T Consensus 8 W~sYg~t~~~l~~l~~~~~~~~r~~~~~ 35 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVWSLRRRRRLRKE 35 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777666666554443
No 181
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=21.35 E-value=2.5e+02 Score=27.32 Aligned_cols=164 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCcchhhHHHHHHHHHHHHHHH
Q 018663 180 LVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSL 259 (352)
Q Consensus 180 ~~~l~aa~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
....+.++...+...+......+... -.........+...............+.+.. ....+..|+......-.
T Consensus 280 ~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-----~i~~~~~G~~~g~~~~~ 353 (455)
T TIGR00892 280 FLLSIIGFVDIFARPSCGLIAGLKWI-RPHVQYLFSFALLFNGLTHLLCALAGDYTGL-----VIYCIFFGLSFGSVGAL 353 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-----HHHHHHHHHHhchHHHH
Q ss_pred HHHHHhccCCceE-------EeeccchHHHHHHHHHHHHhCCc--cchhhhhhHHHHHhhhhhhhccc---chhhhcccc
Q 018663 260 AHTWACHKKGPVY-------VSMYKPLGIVFAIIMGVTLLGDT--LYLGSVVGATIVAFGFYSVIWGQ---SEEEKMIDD 327 (352)
Q Consensus 260 ~~~~~l~~~~~~~-------~s~~~~l~pv~~~~~~~l~l~E~--~s~~~~iG~~lii~g~~l~~~~~---~~~~~~~~~ 327 (352)
.+....+..++.. .+....+.-.++..++-.+.+.. .....+++.++.+++.......+ ++..+++++
T Consensus 354 ~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 433 (455)
T TIGR00892 354 LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQK 433 (455)
T ss_pred HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCcCCCCCCCccccccccc
Q 018663 328 KDIDSLKSSSPKAPLLQTKSIF 349 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~ 349 (352)
..-|+|...+.++.-.|....+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (455)
T TIGR00892 434 AALEREGARDKKDAEGDSRESE 455 (455)
T ss_pred HHHhhcccccccccccccccCC
No 182
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.33 E-value=2.5e+02 Score=20.92 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhc
Q 018663 240 DTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIW 316 (352)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~ 316 (352)
...|...+.+++...++.++.-+|..... .....+-=+|+..+|..++++|+.+..+
T Consensus 29 sp~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 29 SPRWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHcc
Confidence 34577777777777777777766654443 1112222268889999999999887654
No 183
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=21.14 E-value=4.5e+02 Score=25.76 Aligned_cols=13 Identities=0% Similarity=-0.069 Sum_probs=6.8
Q ss_pred hhHHHHHhhhhhh
Q 018663 302 VGATIVAFGFYSV 314 (352)
Q Consensus 302 iG~~lii~g~~l~ 314 (352)
++.+++++.+..+
T Consensus 180 ~a~~v~l~~i~~~ 192 (437)
T TIGR00939 180 TPCVVQLICIVCY 192 (437)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 184
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.07 E-value=1e+03 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=23.1
Q ss_pred chhhhhcchhHHHHHHHHHHHhhccccee
Q 018663 98 TLSSAIVDLTPAFTFILALISRMEKLDLR 126 (352)
Q Consensus 98 ~~a~~l~~~~Pi~t~ila~~~l~ek~~~~ 126 (352)
+.+.++..++|+-.+.++.....+|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~ 39 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDK 39 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccch
Confidence 56678888999999999998877775443
No 185
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.66 E-value=68 Score=25.52 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=3.7
Q ss_pred hhHHHHHhh
Q 018663 302 VGATIVAFG 310 (352)
Q Consensus 302 iG~~lii~g 310 (352)
.|.+.+++.
T Consensus 75 aGvIg~Ill 83 (122)
T PF01102_consen 75 AGVIGIILL 83 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 186
>COG2056 Predicted permease [General function prediction only]
Probab=20.27 E-value=59 Score=30.96 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHHHH
Q 018663 175 WIIGGLVLAAGSFFLSL 191 (352)
Q Consensus 175 ~~~G~~~~l~aa~~~a~ 191 (352)
.....-+++++++..++
T Consensus 55 a~vALSYalLGafAvaI 71 (444)
T COG2056 55 ANVALSYALLGAFAVAI 71 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455566677776665
No 187
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=20.03 E-value=8.2e+02 Score=23.82 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHH--hccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhh
Q 018663 249 SAFFAVALRSLAHTWA--CHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGF 311 (352)
Q Consensus 249 ~~~~~~~~~~~~~~~~--l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~ 311 (352)
.|.++..+++...... +|.=+|..+-..=..--+++.+..-++-++..-..|++|.+.+++-.
T Consensus 299 iG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~~~ 363 (404)
T TIGR03644 299 IGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAWV 363 (404)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4444555555544322 23344655555555555777777666554444456888877766443
Done!