Query 018663
Match_columns 352
No_of_seqs 113 out of 1567
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.4E-10 4.7E-15 93.5 4.8 71 248-318 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 4E-08 1.4E-12 76.2 6.0 70 248-317 34-104 (110)
3 3b5d_A Multidrug transporter E 98.2 5.5E-06 1.9E-10 64.0 9.0 68 76-149 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.2 1.4E-06 4.8E-11 69.9 5.1 69 76-150 34-104 (137)
5 3b9w_A Ammonium transporter fa 63.8 53 0.0018 30.6 10.6 64 243-308 260-330 (407)
6 2zxe_G FXYD10, phospholemman-l 55.9 6.7 0.00023 26.9 2.2 20 300-319 24-43 (74)
7 3l1l_A Arginine/agmatine antip 54.3 17 0.00058 33.8 5.7 45 278-322 388-432 (445)
8 1pw4_A Glycerol-3-phosphate tr 41.4 2E+02 0.0067 25.8 20.1 37 9-46 94-131 (451)
9 4aps_A DI-OR tripeptide H+ sym 38.8 1.5E+02 0.0053 27.1 9.8 12 260-271 407-418 (491)
10 4aps_A DI-OR tripeptide H+ sym 30.4 2.2E+02 0.0077 26.0 9.4 14 189-202 67-80 (491)
11 2jp3_A FXYD domain-containing 24.2 65 0.0022 21.6 2.9 21 300-320 22-42 (67)
12 3rko_J NADH-quinone oxidoreduc 22.5 3.1E+02 0.011 22.3 12.7 33 285-317 127-161 (184)
13 2jo1_A Phospholemman; FXYD1, N 20.9 76 0.0026 21.5 2.8 19 300-318 21-39 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.04 E-value=1.4e-10 Score=93.45 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhccc
Q 018663 248 CSAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQ 318 (352)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~ 318 (352)
.+++++++++|.+|.+++|+.+++++..+ ..+.|+++++++++++||++++.+++|.++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 36677899999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.63 E-value=4e-08 Score=76.19 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeec-cchHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcc
Q 018663 248 CSAFFAVALRSLAHTWACHKKGPVYVSMY-KPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWG 317 (352)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~ 317 (352)
..++++.+++|.++.+++|+.+.+++..+ ..+.|+.+.+++++++||++++.+++|.++|++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667889999999999999999999888 89999999999999999999999999999999999998764
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.23 E-value=5.5e-06 Score=64.03 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=62.0
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhh-cchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhe
Q 018663 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (352)
Q Consensus 76 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~ 149 (352)
+.+++. ..++.++..++++.|.+.+..+ ..+.|+++.+++++++||++++. +++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455555 8889999999999999999998 78999999999999999999999 99999999999988864
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=1.4e-06 Score=69.94 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHH-HHHHHHHHHhhcccCcchhhhh-cchhHHHHHHHHHHHhhcccceeeccccceeehHHhhhhhhhhhhee
Q 018663 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (352)
Q Consensus 76 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pi~t~ila~~~l~ek~~~~~~~~~~~~ig~~l~~~Gv~ll~~~ 150 (352)
+.+++. .+++.+++.++++.+++.+..+ .++.|+++.++++++++|++++. +++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 455665 8899999999999999999999 89999999999999999999999 999999999999988743
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=63.80 E-value=53 Score=30.59 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----H---hccCCceEEeeccchHHHHHHHHHHHHhCCccchhhhhhHHHHH
Q 018663 243 LIAIGCSAFFAVALRSLAHTW----A---CHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVA 308 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~----~---l~~~~~~~~s~~~~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii 308 (352)
|.++ ..|+++..+++....+ . ++.=++.-+--.=..--+++.+...++-. ..+..|++|.+.++
T Consensus 260 ~~A~-iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~-~~~~~Ql~g~~~~~ 330 (407)
T 3b9w_A 260 VGAF-VIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVP-GIAVAQLTGIGITL 330 (407)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHcc-CCcHHHHHHHHHHH
Confidence 4443 4455566666655432 1 33344555555555556666666655433 33456888877753
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=55.90 E-value=6.7 Score=26.91 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=13.0
Q ss_pred hhhhHHHHHhhhhhhhcccc
Q 018663 300 SVVGATIVAFGFYSVIWGQS 319 (352)
Q Consensus 300 ~~iG~~lii~g~~l~~~~~~ 319 (352)
.++++++.++|++++...|=
T Consensus 24 LifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC-
T ss_pred chhHHHHHHHHHHHHHcCcc
Confidence 35667777788877766543
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=54.34 E-value=17 Score=33.79 Aligned_cols=45 Identities=2% Similarity=-0.234 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHhCCccchhhhhhHHHHHhhhhhhhcccchhh
Q 018663 278 PLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEEE 322 (352)
Q Consensus 278 ~l~pv~~~~~~~l~l~E~~s~~~~iG~~lii~g~~l~~~~~~~~~ 322 (352)
...++++.+...+..-..-....+.|.+.++.|+.++.+.++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344555544443332211123455688888889888876554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=41.36 E-value=2e+02 Score=25.82 Aligned_cols=37 Identities=14% Similarity=-0.126 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Q 018663 9 VMVAVECLEVGSSTLNKAAMN-KGTSDFVLIVYSNAFAA 46 (352)
Q Consensus 9 ~~i~~~~~wg~~~~~~k~~~~-~~~~~~~~~~~R~~~a~ 46 (352)
.++++.++++....+.-.... . .+...+...|.+.+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHH
Confidence 445555666666555543100 1 344455566766554
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=38.80 E-value=1.5e+02 Score=27.11 Aligned_cols=12 Identities=0% Similarity=-0.175 Sum_probs=5.8
Q ss_pred HHHHHhccCCce
Q 018663 260 AHTWACHKKGPV 271 (352)
Q Consensus 260 ~~~~~l~~~~~~ 271 (352)
.+....+..++.
T Consensus 407 ~~~~~~~~~p~~ 418 (491)
T 4aps_A 407 GLSVTTKLAPKA 418 (491)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHhCCHH
Confidence 344555555544
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=30.41 E-value=2.2e+02 Score=25.95 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhhc
Q 018663 189 LSLLYIVQTSIIRE 202 (352)
Q Consensus 189 ~a~~~vl~k~~~~~ 202 (352)
..+......++..+
T Consensus 67 ~~~~~~~~g~l~dr 80 (491)
T 4aps_A 67 VYLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444444444
No 11
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=24.25 E-value=65 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=13.6
Q ss_pred hhhhHHHHHhhhhhhhcccch
Q 018663 300 SVVGATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 300 ~~iG~~lii~g~~l~~~~~~~ 320 (352)
.++++++.+.|++++...|-|
T Consensus 22 LifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHcCccc
Confidence 356677777888777665433
No 12
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=22.52 E-value=3.1e+02 Score=22.25 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHhCCccchhhhhhHHHHH--hhhhhhhcc
Q 018663 285 IIMGVTLLGDTLYLGSVVGATIVA--FGFYSVIWG 317 (352)
Q Consensus 285 ~~~~~l~l~E~~s~~~~iG~~lii--~g~~l~~~~ 317 (352)
-.+|..++++..-+-...+.++.+ +|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888899988888888877654 455444443
No 13
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.86 E-value=76 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=12.3
Q ss_pred hhhhHHHHHhhhhhhhccc
Q 018663 300 SVVGATIVAFGFYSVIWGQ 318 (352)
Q Consensus 300 ~~iG~~lii~g~~l~~~~~ 318 (352)
.++++++.++|++++...+
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3456677777877766544
Done!