Query 018663
Match_columns 352
No_of_seqs 113 out of 1567
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 04:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018663.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018663hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 53.7 28 0.002 29.3 9.3 18 188-205 71-88 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 37.8 75 0.0055 24.5 8.8 26 283-308 96-121 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 26.4 1.6E+02 0.011 24.0 20.7 19 105-123 190-208 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 18.3 57 0.0042 15.9 2.8 18 177-194 3-20 (27)
5 d1pv7a_ f.38.1.2 (A:) Lactose 16.0 1.5E+02 0.011 23.4 6.9 32 10-41 16-49 (417)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 12.0 46 0.0033 22.0 1.7 17 307-323 31-47 (91)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 8.9 79 0.0058 23.9 2.4 24 288-311 83-106 (199)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 5.6 7E+02 0.051 20.4 20.7 52 75-126 199-257 (383)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.7 1.8E+02 0.013 17.2 1.9 10 310-319 53-62 (64)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 4.0 2.3E+02 0.017 18.4 2.3 18 303-320 38-55 (100)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=53.74 E-value=28 Score=29.25 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhhcCCh
Q 018663 188 FLSLLYIVQTSIIREYPE 205 (352)
Q Consensus 188 ~~a~~~vl~k~~~~~~~~ 205 (352)
++++......++..++..
T Consensus 71 ~~~~~~~~~G~l~Dr~g~ 88 (447)
T d1pw4a_ 71 AYGFSKFIMGSVSDRSNP 88 (447)
T ss_dssp HHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 334444444444444443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=37.83 E-value=75 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCccchhhhhhHHHHH
Q 018663 283 FAIIMGVTLLGDTLYLGSVVGATIVA 308 (352)
Q Consensus 283 ~~~~~~~l~l~E~~s~~~~iG~~lii 308 (352)
.+.+.+..+.+.+++....+|.++.+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchh
Confidence 34556666788999988877766644
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.39 E-value=1.6e+02 Score=23.96 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=10.2
Q ss_pred chhHHHHHHHHHHHhhccc
Q 018663 105 DLTPAFTFILALISRMEKL 123 (352)
Q Consensus 105 ~~~Pi~t~ila~~~l~ek~ 123 (352)
....+...++.+.+.+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 190 AFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHHCCCSS
T ss_pred hhhHHHHHHHHHHhcccch
Confidence 3444555566666665543
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.34 E-value=57 Score=15.85 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 018663 177 IGGLVLAAGSFFLSLLYI 194 (352)
Q Consensus 177 ~G~~~~l~aa~~~a~~~v 194 (352)
+|.+++-++++.||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 678888888998888753
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.95 E-value=1.5e+02 Score=23.39 Aligned_cols=32 Identities=3% Similarity=-0.270 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHh-cCCChHHHHHHH
Q 018663 10 MVAVECLEVGSSTLNKA-AMN-KGTSDFVLIVYS 41 (352)
Q Consensus 10 ~i~~~~~wg~~~~~~k~-~~~-~~~~~~~~~~~R 41 (352)
.++..+.++...++... ..+ .|.++.++...-
T Consensus 16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~ 49 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIF 49 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 34445555555554433 332 358887766543
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.05 E-value=46 Score=21.97 Aligned_cols=17 Identities=6% Similarity=-0.257 Sum_probs=8.0
Q ss_pred HHhhhhhhhcccchhhh
Q 018663 307 VAFGFYSVIWGQSEEEK 323 (352)
Q Consensus 307 ii~g~~l~~~~~~~~~~ 323 (352)
++.|.+++...|.|+++
T Consensus 31 ~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHHHHHTTTTTTTTST
T ss_pred HHHHHHHhhheeeeccC
Confidence 44455555544444433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.88 E-value=79 Score=23.90 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=15.3
Q ss_pred HHHHhCCccchhhhhhHHHHHhhh
Q 018663 288 GVTLLGDTLYLGSVVGATIVAFGF 311 (352)
Q Consensus 288 ~~l~l~E~~s~~~~iG~~lii~g~ 311 (352)
...+++.+++.....+..+.+...
T Consensus 83 ~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 83 VLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHHHh
Confidence 345678888877776666555443
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.65 E-value=7e+02 Score=20.37 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=26.3
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCcchhhhh--cchh----HHHHHHHHHHHhhccccee
Q 018663 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAI--VDLT----PAFTFILALISRMEKLDLR 126 (352)
Q Consensus 75 ~~~g~~~-~~~~~~~~~al~~~~~~~a~~l--~~~~----Pi~t~ila~~~l~ek~~~~ 126 (352)
...|.+- ..+...++-+-.......+... .... -.++.++...+.+.|.+..
T Consensus 199 ~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~ 257 (383)
T d1u7ga_ 199 VFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLL 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred hhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4445554 7777778877766544433221 2222 3333333334455666654
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.70 E-value=1.8e+02 Score=17.25 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=3.8
Q ss_pred hhhhhhcccc
Q 018663 310 GFYSVIWGQS 319 (352)
Q Consensus 310 g~~l~~~~~~ 319 (352)
++.++.+.++
T Consensus 53 ~~~~~~~f~r 62 (64)
T d2iuba2 53 AVIMVVYFKK 62 (64)
T ss_dssp HHHHHTTTTS
T ss_pred HHHHHHHHhc
Confidence 3333334333
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.03 E-value=2.3e+02 Score=18.39 Aligned_cols=18 Identities=11% Similarity=-0.190 Sum_probs=8.2
Q ss_pred hHHHHHhhhhhhhcccch
Q 018663 303 GATIVAFGFYSVIWGQSE 320 (352)
Q Consensus 303 G~~lii~g~~l~~~~~~~ 320 (352)
+..+++.++..+...++|
T Consensus 38 ~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 344444555555444433
Done!