BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018664
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 134/346 (38%), Gaps = 72/346 (20%)
Query: 31 VIVFGDSSVDTGNNNVIATVLKSNFHPYGRDFEGGRPTGRFCNGRVPPDFIS---EAFGL 87
++VFGDS D G P G T RF N RV P + + E FG
Sbjct: 18 LVVFGDSLSDAGQ-------FPDPAGPAGS-------TSRFTN-RVGPTYQNGSGEIFG- 61
Query: 88 KPTIPAYLDPAYNIS--DFASGVCFASAGTG-----------------YDIVTSSVLNVI 128
PT P L I+ D A+ +A G YD +T++ ++I
Sbjct: 62 -PTAPMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLI 120
Query: 129 PLLKELEYFQDYQNKLRAYVGEAKAKEIVTEALYLVSLGTNDFLENYYIFPQRRAHLSPT 188
L +D RA G ALY ++ G NDFL+ L+
Sbjct: 121 ERDNTLLRSRDGYLVDRARQGLGADPN----ALYYITGGGNDFLQGRI--------LNDV 168
Query: 189 QFQDFLIGLAENFLRKLYNLGARKFSLTGLPPMGCLPLERTTNFPGHHDCVEEYNNVALE 248
Q Q L ++ ++ L GAR + LP +G P F G + ++
Sbjct: 169 QAQQAAGRLVDS-VQALQQAGARYIVVWLLPDLGLTP----ATFGGPLQPFA--SQLSGT 221
Query: 249 FNGKLSSLAIKLNRELPGIRILDAEAFKIFDQIIRKPDAYGFEVVEK--ACCATG---TY 303
FN +L++ +L++ G ++ + + + P ++G + C +G T
Sbjct: 222 FNAELTA---QLSQ--AGANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSGNGCTM 276
Query: 304 EMSYLCSQHSPFTCEDASKYVFWDAFHPTEKTNKIISDYVTPLLLA 349
+Y + +P D SK +F D+ HPT ++I+DY LL A
Sbjct: 277 NPTYGINGSTP----DPSKLLFNDSVHPTITGQRLIADYTYSLLSA 318
>pdb|3BJE|A Chain A, Crystal Structure Of Trypanosoma Brucei Nucleoside
Phosphorylase Shows Uridine Phosphorylase Activity
pdb|3BJE|B Chain B, Crystal Structure Of Trypanosoma Brucei Nucleoside
Phosphorylase Shows Uridine Phosphorylase Activity
Length = 349
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 65 GRPTGRFCNGRVPPDFISEAFGLKPTIPAYLDPAYNISDFASGVCFASAGTGYDIVTSSV 124
GR GRF P+ + E LK + ++ NI S +C+ S GY + V
Sbjct: 255 GRRVGRFMKHLTVPNMVEELGSLKFNLSNGVEVVTNIEMETSAICYLSDMLGYQAGAACV 314
Query: 125 L 125
+
Sbjct: 315 V 315
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 222 GCLPLERTTNFPGHHDCVEEY--NNVALEFNGKLSSLAIKLNREL------PGIRILDAE 273
+ RT +PG ++ +EE+ NN F +L++L KLN+EL P I + +
Sbjct: 215 SAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNL--KLNKELLRKDLKPAIEFREKK 272
Query: 274 AFKIF 278
K++
Sbjct: 273 KCKLY 277
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 222 GCLPLERTTNFPGHHDCVEEY--NNVALEFNGKLSSLAIKLNREL------PGIRILDAE 273
+ RT +PG ++ +EE+ NN F +L++L KLN+EL P I + +
Sbjct: 215 SAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNL--KLNKELLRKDLKPAIEFREKK 272
Query: 274 AFKIF 278
K++
Sbjct: 273 KCKLY 277
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
Length = 655
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 239 VEEYNNVALEFNGKLSSLAIKLNRELPGI-RILDAEAFKIFDQIIRKPDAYG------FE 291
+ ++N+++ +F K +L LN +L + RILDA I DQ+ KP+ YG F
Sbjct: 419 LNDWNSLS-QFESKEGNLYCDLNDDLKILNRILDAH--NIIDQLQDKPENYGNTLKENFA 475
Query: 292 VVEKACCAT 300
+EKA +
Sbjct: 476 PLEKAIVQS 484
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 92 PAYLDPAYNISDFASGVCFASAGTGYDIVTSSVLNVIPLLKELEYFQDYQNKLRAYVGEA 151
P YL N+S ++G A+A +V + L L Y+ + AYV
Sbjct: 264 PIYL---VNVSSISAGDVIAAAKMQGKVVLAETTTAHATLTGLHYYHQDWSHAAAYVTVP 320
Query: 152 KAKEIVTEALYLVSLGTNDFL 172
+ + YL+SL ND L
Sbjct: 321 PLRLDTNTSTYLMSLLANDTL 341
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 129 PLLKELEYFQDYQNKLRAYVGEAKAKEIVTEALYLVSLGTNDFLENYYIFPQR 181
P + ++ Y +DY+ + + KA+E AL++ LG N+ +Y I+ R
Sbjct: 21 PQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYR 73
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 92 PAYLDPAYNISDFASGVCFASAGTGYDIVTSSVLNVIPLLKELEYFQDYQNKLRAYVGEA 151
P YL N+S ++G A+A +V + L L Y+ + AYV
Sbjct: 243 PIYL---VNVSSISAGDVIAAAKMQGKVVLAETTTAHATLTGLHYYHQDWSHAAAYVTVP 299
Query: 152 KAKEIVTEALYLVSLGTNDFL 172
+ + YL+SL ND L
Sbjct: 300 PLRLDTNTSTYLMSLLANDTL 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,818,209
Number of Sequences: 62578
Number of extensions: 473954
Number of successful extensions: 1131
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 10
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)