Your job contains 1 sequence.
>018667
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIV
IKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSG
TTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD
KADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEA
SSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCP
TVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRTN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018667
(352 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2198075 - symbol:AT1G48550 "AT1G48550" species... 1235 9.9e-126 1
UNIPROTKB|F1SGV6 - symbol:DSCR3 "Uncharacterized protein"... 543 2.1e-52 1
MGI|MGI:1206040 - symbol:Dscr3 "Down syndrome critical re... 543 2.1e-52 1
UNIPROTKB|E2RM98 - symbol:DSCR3 "Uncharacterized protein"... 532 3.1e-51 1
UNIPROTKB|E1BSI1 - symbol:DSCR3 "Uncharacterized protein"... 528 8.3e-51 1
UNIPROTKB|O14972 - symbol:DSCR3 "Down syndrome critical r... 527 1.1e-50 1
ZFIN|ZDB-GENE-040801-6 - symbol:dscr3 "Down syndrome crit... 516 1.5e-49 1
UNIPROTKB|A6QLW5 - symbol:DSCR3 "Uncharacterized protein"... 504 2.9e-48 1
UNIPROTKB|B7Z6B1 - symbol:DSCR3 "cDNA FLJ53650, highly si... 252 9.7e-46 2
DICTYBASE|DDB_G0292212 - symbol:vps26l "vacuolar protein ... 457 2.8e-43 1
UNIPROTKB|Q58DN0 - symbol:DSCR3 "Down syndrome critical r... 431 1.6e-40 1
UNIPROTKB|A8MTY9 - symbol:DSCR3 "Down syndrome critical r... 382 3.5e-38 2
FB|FBgn0037017 - symbol:CG4074 species:7227 "Drosophila m... 393 1.7e-36 1
RGD|1306879 - symbol:Dscr3 "Down syndrome critical region... 390 3.5e-36 1
UNIPROTKB|E7EWN9 - symbol:DSCR3 "Down syndrome critical r... 210 2.8e-31 2
UNIPROTKB|A8MY26 - symbol:DSCR3 "cDNA FLJ53689, highly si... 252 7.1e-25 2
UNIPROTKB|B7Z606 - symbol:DSCR3 "cDNA FLJ59969, highly si... 253 1.1e-21 1
>TAIR|locus:2198075 [details] [associations]
symbol:AT1G48550 "AT1G48550" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006886 "intracellular protein
transport" evidence=ISS] [GO:0007034 "vacuolar transport"
evidence=IEA] [GO:0030904 "retromer complex" evidence=IEA]
[GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR005377 Pfam:PF03643 EMBL:CP002684 GO:GO:0007034
GO:GO:0030904 OMA:DSVQHQG IPI:IPI00522406 RefSeq:NP_175288.1
UniGene:At.43020 ProteinModelPortal:F4HYH6 PRIDE:F4HYH6
EnsemblPlants:AT1G48550.1 GeneID:841276 KEGG:ath:AT1G48550
Uniprot:F4HYH6
Length = 327
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 229/316 (72%), Positives = 283/316 (89%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+TV +KLSRSNRIYR SEP++GKIVIKS++SI H I L+VNGS NLQVRGGSAGV+ES
Sbjct: 5 TTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESF 64
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
YGVIKPI+I+KK+ E+++SG+I GTTE+PFS+NL++ GE +E+FYETFHG +INIQYL
Sbjct: 65 YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
+T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct: 125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184
Query: 216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct: 185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244
Query: 276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTP 335
+ADGDVCRNMTLPIYV+LPRLL CP+V AGPFSVEFKV + ISF+S+L+K KSDPT P
Sbjct: 245 IADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAP 304
Query: 336 RLWLAMETLPLELVRT 351
RLW+A+E LPLELVRT
Sbjct: 305 RLWMALERLPLELVRT 320
>UNIPROTKB|F1SGV6 [details] [associations]
symbol:DSCR3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0030904 "retromer
complex" evidence=IEA] [GO:0007034 "vacuolar transport"
evidence=IEA] InterPro:IPR005377 Pfam:PF03643 GO:GO:0005634
GO:GO:0007034 GO:GO:0030904 OMA:DSVQHQG
GeneTree:ENSGT00390000009324 EMBL:CU862004 RefSeq:XP_003483406.1
Ensembl:ENSSSCT00000013195 GeneID:100738307 KEGG:ssc:100738307
Uniprot:F1SGV6
Length = 297
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 117/287 (40%), Positives = 172/287 (59%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+T++IK+ R+N++Y E L G +VI S+ H G+ LTV G+ NLQ+ S GV E+
Sbjct: 3 TTLDIKIKRANKVYHAGEMLSGVVVISGKDSVQHQGVSLTVEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + E+ G+ SG TE+PF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTVEMAKPGKFPSGKTEIPFEFPLHVKGTKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
+ D+ R L K L+ T EFIV + + ++P V F IT DT + LLP+
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPDTLQNVKERALLPK- 175
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
F + G + ST C + P+TGEL VE+S I SI++ L+R+E+ E + +
Sbjct: 176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
IQ Q+ADGDVCR++++PIY++ PRL TCPT+ F VEF+V+VV+
Sbjct: 232 IQNIQIADGDVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEVNVVV 278
>MGI|MGI:1206040 [details] [associations]
symbol:Dscr3 "Down syndrome critical region gene 3"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=ISO]
[GO:0007034 "vacuolar transport" evidence=IEA] [GO:0030904
"retromer complex" evidence=IEA] InterPro:IPR005377 Pfam:PF03643
MGI:MGI:1206040 GO:GO:0005634 GO:GO:0007034 GO:GO:0030904
eggNOG:NOG321080 OMA:DSVQHQG CTD:10311 HOGENOM:HOG000294089
HOVERGEN:HBG051411 EMBL:AB001990 EMBL:AK077485 EMBL:AK077628
EMBL:BC003740 IPI:IPI00126499 PIR:JC5699 RefSeq:NP_031860.1
UniGene:Mm.7472 ProteinModelPortal:O35075 STRING:O35075
PhosphoSite:O35075 PaxDb:O35075 PRIDE:O35075
Ensembl:ENSMUST00000023615 GeneID:13185 KEGG:mmu:13185
GeneTree:ENSGT00390000009324 InParanoid:O35075 OrthoDB:EOG4DV5MN
NextBio:283304 Bgee:O35075 CleanEx:MM_DSCR3 Genevestigator:O35075
GermOnline:ENSMUSG00000022898 Uniprot:O35075
Length = 297
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 113/288 (39%), Positives = 174/288 (60%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+T++IK+ R+N++Y E L G +VI S S+ H G+ LT+ G+ NLQ+ S GV E+
Sbjct: 3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + ++ G+I SG TEVPF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
+ D+ R L K L+ T EFIV + + ++P V F IT +T ++ +
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQN-VKERASLPK 175
Query: 216 FKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
F + G + ST C++ P+TGEL VE S I SI++ L+R+E+ E + + IQ
Sbjct: 176 FFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNI 235
Query: 275 QVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322
Q+ADGD+CRN+++P+Y++ PRL TCPT+ F VEF+V+VV+ ++
Sbjct: 236 QIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283
>UNIPROTKB|E2RM98 [details] [associations]
symbol:DSCR3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030904 "retromer complex" evidence=IEA]
[GO:0007034 "vacuolar transport" evidence=IEA] InterPro:IPR005377
Pfam:PF03643 GO:GO:0007034 GO:GO:0030904 OMA:DSVQHQG
GeneTree:ENSGT00390000009324 EMBL:AAEX03016527 EMBL:AAEX03016528
Ensembl:ENSCAFT00000015549 Uniprot:E2RM98
Length = 297
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 116/292 (39%), Positives = 173/292 (59%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
++++IK+ R+N++Y E L G +VI SI H G+ LTV GS NLQ+ S GV E+
Sbjct: 3 TSLDIKIKRANKVYHAGEVLSGVVVISGKDSIQHQGVSLTVEGSVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + E+ G+ SG TE+PF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
+ D+ R L K L+ T EFIV + + ++P V F IT +T + LLP+
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKERALLPK- 175
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
F + G + ST C + P+TGEL VE+S I SI++ L+R+E+ E + +
Sbjct: 176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322
IQ Q+ADGDVCR +++PI+++ PRL TCPT+ F VEF+V+VV+ ++
Sbjct: 232 IQNIQIADGDVCRGLSVPIHMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283
>UNIPROTKB|E1BSI1 [details] [associations]
symbol:DSCR3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0007034 "vacuolar transport" evidence=IEA] [GO:0030904
"retromer complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR005377 Pfam:PF03643 GO:GO:0005634
GO:GO:0007034 GO:GO:0030904 OMA:DSVQHQG CTD:10311
GeneTree:ENSGT00390000009324 EMBL:AADN02010801 EMBL:AADN02010802
IPI:IPI00600513 RefSeq:XP_416728.1 UniGene:Gga.16653
ProteinModelPortal:E1BSI1 Ensembl:ENSGALT00000025863 GeneID:418519
KEGG:gga:418519 NextBio:20821691 Uniprot:E1BSI1
Length = 297
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 112/284 (39%), Positives = 172/284 (60%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+ ++IK+ R+N++YR E L G +VI S ++ H GI LT+ GS NLQ+ S GV E+
Sbjct: 3 TALDIKIKRANKVYRCGEILSGVVVITSKDTVQHQGISLTMEGSVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + E+ G++ SG TE+PF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTIEMVKPGKLPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLER-PVSPEMVVFYITQDTQRHPLLPELKSG 214
+ D+ R L K L+ T EFIV + L ++ ++P V F IT +T ++ +
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHS----LSQKGKLTPSPVDFTITPETLQN-VKERASLP 174
Query: 215 GFKVTGKMS-TQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
F + G +S T C + P+TGEL VE++ + SI++ L+R+E+ E + + IQ
Sbjct: 175 KFLIRGHLSSTNCVITQPLTGELVVESAEAAVKSIELQLVRVETCGCAEGYARDATEIQN 234
Query: 274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
Q+ADGDVCR + +PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 235 IQIADGDVCRGLPIPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278
>UNIPROTKB|O14972 [details] [associations]
symbol:DSCR3 "Down syndrome critical region protein 3"
species:9606 "Homo sapiens" [GO:0007034 "vacuolar transport"
evidence=IEA] [GO:0030904 "retromer complex" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005377 Pfam:PF03643 GO:GO:0005634 EMBL:CH471079
GO:GO:0007034 GO:GO:0030904 eggNOG:NOG321080 OMA:DSVQHQG
EMBL:D87343 EMBL:AK312707 EMBL:BC110655 IPI:IPI00298946 PIR:JC5698
RefSeq:NP_006043.1 UniGene:Hs.369488 ProteinModelPortal:O14972
DIP:DIP-47317N STRING:O14972 PhosphoSite:O14972 PaxDb:O14972
PRIDE:O14972 DNASU:10311 Ensembl:ENST00000309117 GeneID:10311
KEGG:hsa:10311 UCSC:uc002ywf.1 CTD:10311 GeneCards:GC21M038591
H-InvDB:HIX0022605 HGNC:HGNC:3044 HPA:HPA023288 MIM:605298
neXtProt:NX_O14972 PharmGKB:PA27496 HOGENOM:HOG000294089
HOVERGEN:HBG051411 InParanoid:O14972 ChiTaRS:DSCR3 GenomeRNAi:10311
NextBio:39075 ArrayExpress:O14972 Bgee:O14972 CleanEx:HS_DSCR3
Genevestigator:O14972 GermOnline:ENSG00000157538 Uniprot:O14972
Length = 297
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 113/287 (39%), Positives = 170/287 (59%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+ ++IK+ R+N++Y E L G +VI S S+ H G+ LT+ G+ NLQ+ S GV E+
Sbjct: 3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + E+ G+ SG TE+PF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
+ D+ R L K L+ T EFIV + + +P V F IT +T + LLP+
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK- 175
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
F + G + ST C + P+TGEL VE+S I S+++ L+R+E+ E + +
Sbjct: 176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
IQ Q+ADGDVCR +++PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 232 IQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278
>ZFIN|ZDB-GENE-040801-6 [details] [associations]
symbol:dscr3 "Down syndrome critical region gene 3"
species:7955 "Danio rerio" [GO:0007034 "vacuolar transport"
evidence=IEA] [GO:0030904 "retromer complex" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR005377
Pfam:PF03643 ZFIN:ZDB-GENE-040801-6 GO:GO:0007034 GO:GO:0030904
eggNOG:NOG321080 OMA:DSVQHQG CTD:10311 HOGENOM:HOG000294089
HOVERGEN:HBG051411 GeneTree:ENSGT00390000009324 OrthoDB:EOG4DV5MN
EMBL:CU633885 EMBL:BC075958 IPI:IPI00512940 RefSeq:NP_001003421.1
UniGene:Dr.87036 Ensembl:ENSDART00000036375 GeneID:445026
KEGG:dre:445026 NextBio:20831787 Uniprot:Q6DHL2
Length = 297
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 109/284 (38%), Positives = 170/284 (59%)
Query: 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
+++I+L R+N++Y E L G +V+ S + H G+ L++ G NLQ+ S GV E+ Y
Sbjct: 4 SLDIRLKRANKVYHEGERLCGLLVVVSRDPLQHQGVSLSLEGLVNLQLSAKSVGVFEAFY 63
Query: 97 GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
+KPI+++ + E+ G++ +G TE+PF L+ G + L YET+HG +NIQY +
Sbjct: 64 NSVKPIQLVSSTMEVAKPGKVPAGRTEIPFEFPLQAKGNKQL---YETYHGVFVNIQYTL 120
Query: 157 TVDIMRGYLHKSLSATVEFIV--ETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
DI R L K LS + EF+V + KA L PV F IT +T ++ +
Sbjct: 121 RCDIRRSLLAKDLSKSCEFMVHCQPQKAKLQPNPVD-----FSITPETLQN-IRERASLP 174
Query: 215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
F + G + +T CS+ P++GEL VE S VPI SI++ L+R+E+ E + + IQ
Sbjct: 175 RFLIRGHLDATCCSITRPLSGELVVENSEVPIKSIELQLVRVETCGCAEGYARDATEIQN 234
Query: 274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
Q+A+GDVC +++PIY++ PRL TCPT+ F VEF+V++VI
Sbjct: 235 IQIAEGDVCHGLSIPIYMVFPRLFTCPTLETTNFKVEFEVNIVI 278
>UNIPROTKB|A6QLW5 [details] [associations]
symbol:DSCR3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0030904 "retromer
complex" evidence=IEA] [GO:0007034 "vacuolar transport"
evidence=IEA] InterPro:IPR005377 Pfam:PF03643 GO:GO:0005634
GO:GO:0007034 GO:GO:0030904 eggNOG:NOG321080 OMA:DSVQHQG
HOGENOM:HOG000294089 HOVERGEN:HBG051411
GeneTree:ENSGT00390000009324 OrthoDB:EOG4DV5MN EMBL:DAAA02003581
EMBL:DAAA02003582 EMBL:DAAA02003583 EMBL:BC148109 IPI:IPI00843710
UniGene:Bt.6631 Ensembl:ENSBTAT00000050520 InParanoid:A6QLW5
Uniprot:A6QLW5
Length = 292
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 113/287 (39%), Positives = 168/287 (58%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+T++IK+ R+N+ E L G +VI S+ H G+ LTV G+ NLQ+ S GV E+
Sbjct: 3 TTLDIKIKRANK-----EMLSGVVVISGKDSVQHQGLSLTVEGTVNLQLSAKSVGVFEAF 57
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+++ + E+ G+ G TE+PF L H + N + YET+HG +NIQY
Sbjct: 58 YNSVKPIQVINSTIEMVKPGKFPGGKTEIPFEFPL--HVKSN-KVLYETYHGVFVNIQYT 114
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
+ D+ R L K L+ T EFIV + + +P V F IT DT + LLP+
Sbjct: 115 LRCDMRRSLLAKDLTKTCEFIVHSTPQ---KGKWTPSPVDFTITPDTLQNVKERALLPK- 170
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
F + G + ST C + P+TGEL VE+S I SI++ L+R+E+ E + +
Sbjct: 171 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 226
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
IQ Q+ADGDVCR +++PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 227 IQNIQIADGDVCRGLSIPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 273
>UNIPROTKB|B7Z6B1 [details] [associations]
symbol:DSCR3 "cDNA FLJ53650, highly similar to Down
syndrome critical region protein 3" species:9606 "Homo sapiens"
[GO:0007034 "vacuolar transport" evidence=IEA] [GO:0030904
"retromer complex" evidence=IEA] InterPro:IPR005377 Pfam:PF03643
GO:GO:0007034 GO:GO:0030904 UniGene:Hs.369488 HGNC:HGNC:3044
HOGENOM:HOG000294089 ChiTaRS:DSCR3 EMBL:AP001432 EMBL:AP001412
EMBL:AK300024 EMBL:AK316460 IPI:IPI00790720 STRING:B7Z6B1
Ensembl:ENST00000476950 UCSC:uc010gnl.2 Uniprot:B7Z6B1
Length = 270
Score = 252 (93.8 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 54/133 (40%), Positives = 82/133 (61%)
Query: 190 SPEMVVFYITQDT----QRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVP 244
+P V F IT +T + LLP+ F + G + ST C + P+TGEL VE+S
Sbjct: 124 TPSPVDFTITPETLQNVKERALLPK-----FLLRGHLNSTNCVITQPLTGELVVESSEAA 178
Query: 245 IHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLA 304
I S+++ L+R+E+ E + + IQ Q+ADGDVCR +++PIY++ PRL TCPT+
Sbjct: 179 IRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLET 238
Query: 305 GPFSVEFKVSVVI 317
F VEF+V++V+
Sbjct: 239 TNFKVEFEVNIVV 251
Score = 245 (91.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 48/118 (40%), Positives = 72/118 (61%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+ ++IK+ R+N++Y E L G +VI S S+ H G+ LT+ G+ NLQ+ S GV E+
Sbjct: 3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQ 153
Y +KPI+I+ + E+ G+ SG TE+PF L G + L YET+HG +NIQ
Sbjct: 63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQ 117
>DICTYBASE|DDB_G0292212 [details] [associations]
symbol:vps26l "vacuolar protein sorting-associated
protein 26 family protein" species:44689 "Dictyostelium discoideum"
[GO:0030904 "retromer complex" evidence=IEA] [GO:0007034 "vacuolar
transport" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR005377 Pfam:PF03643
dictyBase:DDB_G0292212 GO:GO:0007034 InterPro:IPR014756
SUPFAM:SSF81296 GO:GO:0030904 EMBL:AAFI02000188 RefSeq:XP_629739.1
ProteinModelPortal:Q54DI8 PRIDE:Q54DI8 EnsemblProtists:DDB0267115
GeneID:8628568 KEGG:ddi:DDB_G0292212 eggNOG:NOG321080 OMA:DSVQHQG
ProtClustDB:CLSZ2429449 Uniprot:Q54DI8
Length = 304
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 92/287 (32%), Positives = 162/287 (56%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+ +++KL + ++IYRP + G +VI S + H G+ + V G+ LQ+ S G+ E+
Sbjct: 3 NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSG-RIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
Y +KPI ++ + + G + +G TE+PF L+ + L Y+T+HG +NIQY
Sbjct: 63 YNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQY 119
Query: 155 LVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDTQ-RHPLLPEL 211
+ D+ RG L K LS T+EFIVE + ++L + ++ F IT D+ + +
Sbjct: 120 SIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKA 179
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
FK++G + S C++ + G + +E++ I S+++ L+R+E+ + E +
Sbjct: 180 DVPTFKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTE 239
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
IQ Q+ADGD+ RN +P+Y++ PRL TC + F +EF+V++VI
Sbjct: 240 IQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVI 286
>UNIPROTKB|Q58DN0 [details] [associations]
symbol:DSCR3 "Down syndrome critical region protein 3"
species:9913 "Bos taurus" [GO:0030904 "retromer complex"
evidence=IEA] [GO:0007034 "vacuolar transport" evidence=IEA]
InterPro:IPR005377 Pfam:PF03643 GO:GO:0007034 GO:GO:0030904
CTD:10311 HOGENOM:HOG000294089 HOVERGEN:HBG051411
GeneTree:ENSGT00390000009324 EMBL:DAAA02003581 EMBL:DAAA02003582
EMBL:DAAA02003583 UniGene:Bt.6631 EMBL:BT021567 IPI:IPI00714351
RefSeq:NP_001035600.2 Ensembl:ENSBTAT00000006292 GeneID:507647
KEGG:bta:507647 NextBio:20868157 Uniprot:Q58DN0
Length = 262
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 99/258 (38%), Positives = 145/258 (56%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+T++IK+ R+N++Y E L G +VI S+ H G+ LTV G+ NLQ+ S GV E+
Sbjct: 3 TTLDIKIKRANKVYHAGEMLSGVVVISGKDSVQHQGLSLTVEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+++ + E+ G+ G TE+PF L H + N + YET+HG +NIQY
Sbjct: 63 YNSVKPIQVINSTIEMVKPGKFPGGKTEIPFEFPL--HVKSN-KVLYETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
+ D+ R L K L+ T EFIV + + +P V F IT DT + LLP+
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSTPQ---KGKWTPSPVDFTITPDTLQNVKERALLPK- 175
Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
F + G + ST C + P+TGEL VE+S I SI++ L+R+E+ E + +
Sbjct: 176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231
Query: 271 IQTTQVADGDVCRNMTLP 288
IQ Q+ADGDVCR P
Sbjct: 232 IQNIQIADGDVCRASPSP 249
>UNIPROTKB|A8MTY9 [details] [associations]
symbol:DSCR3 "Down syndrome critical region protein 3"
species:9606 "Homo sapiens" [GO:0007034 "vacuolar transport"
evidence=IEA] [GO:0030904 "retromer complex" evidence=IEA]
InterPro:IPR005377 Pfam:PF03643 GO:GO:0007034 GO:GO:0030904
HGNC:HGNC:3044 HOGENOM:HOG000294089 HOVERGEN:HBG051411
ChiTaRS:DSCR3 EMBL:AP001432 EMBL:AP001412 IPI:IPI00789523
ProteinModelPortal:A8MTY9 STRING:A8MTY9 PRIDE:A8MTY9
Ensembl:ENST00000398998 ArrayExpress:A8MTY9 Bgee:A8MTY9
Uniprot:A8MTY9
Length = 249
Score = 382 (139.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 87/222 (39%), Positives = 129/222 (58%)
Query: 101 PIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDI 160
PI+I+ + E+ G+ SG TE+PF L G + L YET+HG +NIQY + D+
Sbjct: 20 PIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYTLRCDM 76
Query: 161 MRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPELKSGGF 216
R L K L+ T EFIV + + +P V F IT +T + LLP+ F
Sbjct: 77 KRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK-----F 128
Query: 217 KVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
+ G + ST C + P+TGEL VE+S I S+++ L+R+E+ E + + IQ Q
Sbjct: 129 LLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQ 188
Query: 276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
+ADGDVCR +++PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 189 IADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 230
Score = 43 (20.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 36 STVEIKLSRSNRIYRPSEPLQ 56
+ ++IK+ R+N++Y P+Q
Sbjct: 3 TALDIKIKRANKVYHAG-PIQ 22
>FB|FBgn0037017 [details] [associations]
symbol:CG4074 species:7227 "Drosophila melanogaster"
[GO:0030904 "retromer complex" evidence=IEA] [GO:0007034 "vacuolar
transport" evidence=IEA] InterPro:IPR005377 Pfam:PF03643
EMBL:AE014296 GO:GO:0007034 GO:GO:0030904 eggNOG:NOG321080
OMA:DSVQHQG GeneTree:ENSGT00390000009324 EMBL:BT023306
RefSeq:NP_649249.1 UniGene:Dm.24022 SMR:Q9VPC3
EnsemblMetazoa:FBtr0078280 GeneID:40290 KEGG:dme:Dmel_CG4074
UCSC:CG4074-RA FlyBase:FBgn0037017 InParanoid:Q9VPC3
OrthoDB:EOG4Q83D7 GenomeRNAi:40290 NextBio:818005 Uniprot:Q9VPC3
Length = 295
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 87/271 (32%), Positives = 154/271 (56%)
Query: 55 LQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTS 114
L G + + + H GI L + G NLQ+ + G+ ++ Y +KPI +L+ S E+
Sbjct: 2 LLGCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPINLLQNSLELSAP 61
Query: 115 GRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVE 174
G++ +G +E F + L E + YET+HG IN+ Y +T + R +L K+ + +
Sbjct: 62 GKLSAGRSEFHFELPLVCKKEPRI--LYETYHGVFINVNYQLTCTVKRNFLGKATTKIQQ 119
Query: 175 FIVETDKADLLERPVSPEMVVFYITQDT-QRHPLLPE-LKSGGFKVTGKMS-TQCSLLDP 231
F V+ L E S ++V F ++ D+ Q++ E L F +TG++ ++ + P
Sbjct: 120 FCVQYKPVPLSED--SKKVVPFSLSPDSLQKNASAKERLSMPRFLITGRLDRSEFCVTTP 177
Query: 232 ITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYV 291
ITG +TV+ + I SI++ L+R+E+ E + + IQT Q+ADG+V + LPI++
Sbjct: 178 ITGSITVQHTEAAIKSIEMQLVRVETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHM 237
Query: 292 ILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322
+LPRL TCPT+L F +EF++++++ F+ +
Sbjct: 238 VLPRLFTCPTLLTKNFKIEFELNLIVVFKED 268
>RGD|1306879 [details] [associations]
symbol:Dscr3 "Down syndrome critical region gene 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0007034 "vacuolar transport" evidence=IEA]
[GO:0030904 "retromer complex" evidence=IEA] InterPro:IPR005377
Pfam:PF03643 RGD:1306879 GO:GO:0005634 GO:GO:0007034 GO:GO:0030904
OMA:DSVQHQG GeneTree:ENSGT00390000009324 IPI:IPI00763791
PRIDE:E9PU42 Ensembl:ENSRNOT00000002284 Uniprot:E9PU42
Length = 220
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 88/224 (39%), Positives = 133/224 (59%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+T++IK+ R+N++Y E L G +VI S S+ H G+ LT+ G+ NLQ+ S GV E+
Sbjct: 3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
Y +KPI+I+ + ++ G+I SG TEVPF L G + L YET+HG +NIQY
Sbjct: 63 YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119
Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKS-G 214
+ D+ R L K L+ T EFIV + + ++P V F IT +T ++ + E S
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQN--VKERASLP 174
Query: 215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMES 257
F + G + ST C++ P+TGEL VE S I SI++ L+R+E+
Sbjct: 175 KFLIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVET 218
>UNIPROTKB|E7EWN9 [details] [associations]
symbol:DSCR3 "Down syndrome critical region protein 3"
species:9606 "Homo sapiens" [GO:0007034 "vacuolar transport"
evidence=IEA] [GO:0030904 "retromer complex" evidence=IEA]
InterPro:IPR005377 Pfam:PF03643 GO:GO:0007034 GO:GO:0030904
HGNC:HGNC:3044 ChiTaRS:DSCR3 EMBL:AP001432 EMBL:AP001412
IPI:IPI00385046 ProteinModelPortal:E7EWN9 PRIDE:E7EWN9
Ensembl:ENST00000288304 ArrayExpress:E7EWN9 Bgee:E7EWN9
Uniprot:E7EWN9
Length = 253
Score = 210 (79.0 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 76 VNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGE 135
+ G+ NLQ+ S GV E+ Y +KPI+I+ + E+ G+ SG TE+PF L G
Sbjct: 1 MEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGN 60
Query: 136 ENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVV 195
+ L YET+HG +NIQY + D+ R L K L+ T EFIV + + +P V
Sbjct: 61 KVL---YETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVD 114
Query: 196 FYITQDT----QRHPLLPE 210
F IT +T + LLP+
Sbjct: 115 FTITPETLQNVKERALLPK 133
Score = 155 (59.6 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
IQ Q+ADGDVCR +++PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 188 IQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 234
>UNIPROTKB|A8MY26 [details] [associations]
symbol:DSCR3 "cDNA FLJ53689, highly similar to Down
syndrome critical region protein 3" species:9606 "Homo sapiens"
[GO:0007034 "vacuolar transport" evidence=IEA] [GO:0030904
"retromer complex" evidence=IEA] InterPro:IPR005377 Pfam:PF03643
GO:GO:0007034 GO:GO:0030904 UniGene:Hs.369488 HGNC:HGNC:3044
HOGENOM:HOG000294089 HOVERGEN:HBG051411 ChiTaRS:DSCR3 EMBL:AP001432
EMBL:AP001412 EMBL:AK303624 IPI:IPI00790030 STRING:A8MY26
Ensembl:ENST00000399001 UCSC:uc011aeh.1 Uniprot:A8MY26
Length = 172
Score = 252 (93.8 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 54/133 (40%), Positives = 82/133 (61%)
Query: 190 SPEMVVFYITQDT----QRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVP 244
+P V F IT +T + LLP+ F + G + ST C + P+TGEL VE+S
Sbjct: 26 TPSPVDFTITPETLQNVKERALLPK-----FLLRGHLNSTNCVITQPLTGELVVESSEAA 80
Query: 245 IHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLA 304
I S+++ L+R+E+ E + + IQ Q+ADGDVCR +++PIY++ PRL TCPT+
Sbjct: 81 IRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLET 140
Query: 305 GPFSVEFKVSVVI 317
F VEF+V++V+
Sbjct: 141 TNFKVEFEVNIVV 153
Score = 46 (21.3 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGK 58
+ ++IK+ R+N++Y P +GK
Sbjct: 3 TALDIKIKRANKVYHAG-PQKGK 24
>UNIPROTKB|B7Z606 [details] [associations]
symbol:DSCR3 "cDNA FLJ59969, highly similar to Down
syndrome critical region protein 3" species:9606 "Homo sapiens"
[GO:0007034 "vacuolar transport" evidence=IEA] [GO:0030904
"retromer complex" evidence=IEA] InterPro:IPR005377 Pfam:PF03643
GO:GO:0007034 GO:GO:0030904 UniGene:Hs.369488 HGNC:HGNC:3044
HOVERGEN:HBG051411 ChiTaRS:DSCR3 EMBL:AP001432 EMBL:AP001412
EMBL:AK299662 IPI:IPI00922353 STRING:B7Z606 Ensembl:ENST00000539844
UCSC:uc011aeg.1 Uniprot:B7Z606
Length = 220
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 60/164 (36%), Positives = 93/164 (56%)
Query: 161 MRGYLHKSLSATVEFIVET--DKADLLERPVSPEMVVFYITQDT----QRHPLLPELKSG 214
M G ++ LSA + E + + +P V F IT +T + LLP+
Sbjct: 43 MEGTVNLQLSAKSVGVFEAFYNSVKPQKGKFTPSPVDFTITPETLQNVKERALLPK---- 98
Query: 215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
F + G + ST C + P+TGEL VE+S I S+++ L+R+E+ E + + IQ
Sbjct: 99 -FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQN 157
Query: 274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
Q+ADGDVCR +++PIY++ PRL TCPT+ F VEF+V++V+
Sbjct: 158 IQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 201
Score = 154 (59.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
+ ++IK+ R+N++Y E L G +VI S S+ H G+ LT+ G+ NLQ+ S GV E+
Sbjct: 3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62
Query: 96 YGVIKPIK 103
Y +KP K
Sbjct: 63 YNSVKPQK 70
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 352 352 0.00078 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 598 (64 KB)
Total size of DFA: 193 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.47u 0.16s 27.63t Elapsed: 00:00:01
Total cpu time: 27.47u 0.16s 27.63t Elapsed: 00:00:01
Start: Thu May 9 20:19:11 2013 End: Thu May 9 20:19:12 2013