Query 018667
Match_columns 352
No_of_seqs 156 out of 409
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2717 Uncharacterized conser 100.0 2.1E-75 4.6E-80 530.4 24.5 306 37-350 4-310 (313)
2 PF03643 Vps26: Vacuolar prote 100.0 2E-65 4.3E-70 487.0 32.9 262 23-322 3-275 (275)
3 KOG3063 Membrane coat complex 100.0 3.3E-62 7.1E-67 444.5 19.9 275 23-351 10-296 (301)
4 KOG3780 Thioredoxin binding pr 100.0 8.9E-26 1.9E-30 226.5 32.8 270 35-321 4-301 (427)
5 PF00339 Arrestin_N: Arrestin 99.9 1E-23 2.2E-28 180.7 3.4 135 38-180 1-145 (149)
6 PF02752 Arrestin_C: Arrestin 98.6 5.8E-06 1.3E-10 69.1 16.6 118 214-349 3-132 (136)
7 PF08737 Rgp1: Rgp1; InterPro 98.2 0.0004 8.8E-09 70.6 22.7 99 220-319 308-413 (415)
8 PF07070 Spo0M: SpoOM protein; 98.2 0.00011 2.4E-09 68.4 16.2 124 31-179 8-133 (218)
9 PF02752 Arrestin_C: Arrestin 98.1 0.0001 2.2E-09 61.5 14.3 124 37-179 6-133 (136)
10 KOG3865 Arrestin [Signal trans 97.6 0.0068 1.5E-07 58.9 17.7 198 120-351 107-348 (402)
11 PF00339 Arrestin_N: Arrestin 97.0 0.0053 1.1E-07 52.1 9.6 113 226-346 12-148 (149)
12 PF13002 LDB19: Arrestin_N ter 97.0 0.0024 5.1E-08 58.2 7.1 45 111-162 41-88 (191)
13 PF07070 Spo0M: SpoOM protein; 96.3 0.28 6.2E-06 45.8 16.1 106 212-322 9-120 (218)
14 PF03643 Vps26: Vacuolar prote 95.1 0.47 1E-05 45.9 13.0 115 24-161 155-271 (275)
15 PF04425 Bul1_N: Bul1 N termin 94.5 0.12 2.5E-06 53.0 7.7 37 46-82 157-195 (438)
16 PF01835 A2M_N: MG2 domain; I 94.3 1.1 2.3E-05 35.8 11.4 24 38-63 2-25 (99)
17 COG4326 Spo0M Sporulation cont 94.0 0.16 3.5E-06 46.9 6.5 111 47-180 42-154 (270)
18 PF08737 Rgp1: Rgp1; InterPro 88.8 6.2 0.00013 40.3 12.2 119 24-161 293-412 (415)
19 KOG3865 Arrestin [Signal trans 88.1 15 0.00033 36.3 13.5 46 37-84 196-241 (402)
20 PF13002 LDB19: Arrestin_N ter 87.0 9.2 0.0002 35.1 10.9 96 249-351 2-114 (191)
21 KOG3780 Thioredoxin binding pr 78.4 75 0.0016 31.9 14.8 119 218-344 7-158 (427)
22 TIGR03833 conserved hypothetic 55.8 17 0.00036 27.3 3.4 43 32-78 9-52 (62)
23 COG2373 Large extracellular al 49.3 2.1E+02 0.0046 34.6 12.7 142 37-255 393-541 (1621)
24 TIGR03517 GldM_gliding gliding 48.7 61 0.0013 34.3 7.5 47 45-91 242-293 (523)
25 PF09962 DUF2196: Uncharacteri 47.1 28 0.00061 26.2 3.4 42 32-77 10-52 (62)
26 KOG1366 Alpha-macroglobulin [P 43.0 3.8E+02 0.0082 32.2 13.3 25 216-240 227-251 (1436)
27 KOG3063 Membrane coat complex 38.4 3.7E+02 0.008 25.8 11.2 123 26-179 164-295 (301)
28 COG4326 Spo0M Sporulation cont 32.6 1.1E+02 0.0025 28.6 5.7 73 226-300 44-121 (270)
29 TIGR02876 spore_yqfD sporulati 30.7 5.6E+02 0.012 25.9 10.9 74 2-81 168-242 (382)
30 PRK10579 hypothetical protein; 25.4 3.7E+02 0.0081 21.9 8.9 67 47-133 5-76 (94)
No 1
>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only]
Probab=100.00 E-value=2.1e-75 Score=530.39 Aligned_cols=306 Identities=58% Similarity=0.981 Sum_probs=281.5
Q ss_pred EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCee
Q 018667 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR 116 (352)
Q Consensus 37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~ 116 (352)
.++|++.+++++|..||.+.|+|++.+...++|+||++.++|.+++|.+++++|.+|+||++.+|++++..++++..+|+
T Consensus 4 ~~~vkl~rsnriy~s~e~l~G~vvi~sa~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK 83 (313)
T KOG2717|consen 4 TVNVKLSRSNRIYRSSEPLEGKVVIKSATSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGK 83 (313)
T ss_pred eEEEEEecccceeecCCccceeEEEEeccccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEcCccccCCCCCCceEEE
Q 018667 117 IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVF 196 (352)
Q Consensus 117 L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~~~~l~~~~~~p~pv~f 196 (352)
+|+|+++|||+|+|-..+ ..+++||+|||++.+|+|.++|+|+|+++.|++++.++|.|++.+.++.+. +|++|.|
T Consensus 84 ~p~G~tEipFelpL~~kg--e~~~lYETyHGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv~l~e~--~p~iV~F 159 (313)
T KOG2717|consen 84 IPPGTTEIPFELPLREKG--EGEKLYETYHGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPVDLPER--PPEIVIF 159 (313)
T ss_pred CCCCceeeeeeeeeccCC--CccEeeeeecceEEEEEEEEEEecccchhcCchhhhheeeeccCCcccccC--CCcceEE
Confidence 999999999999998774 347899999999999999999999999999999999999999988877544 6799999
Q ss_pred EecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEE
Q 018667 197 YITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275 (352)
Q Consensus 197 ~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~e 275 (352)
.|+||++++......+.|+|+|.+++|.+ |++.||++|++++++++++|+|||+||+|+|||+|++++.+|+++||++|
T Consensus 160 ~itpdtlq~~~ker~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQ 239 (313)
T KOG2717|consen 160 YITPDTLQHPLKERIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQ 239 (313)
T ss_pred EEChHHhhccchhhccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEE
Confidence 99999999975567789999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCeeEeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEe
Q 018667 276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVR 350 (352)
Q Consensus 276 I~dG~p~rg~~IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r 350 (352)
|+|||+||+.++||||.|||||+|||+.+++|+|+|++|+++.+.+| +.+.++--.|++.++|-+|++|.|
T Consensus 240 IADGdVcr~l~lPIymvlPRLftCPtl~t~nFkvEFevni~v~fk~d----~~~~enf~~~L~r~~~~lp~~~~~ 310 (313)
T KOG2717|consen 240 IADGDVCRNLTLPIYMVLPRLFTCPTLFTGNFKVEFEVNITVSFKSD----LAKAENFAPRLWRALERLPLELVR 310 (313)
T ss_pred eccCccccCCceeEEEEechhhcCCceeccccEEEEEEEEEEEEccc----hhhccCCchHHHHhcCCCcHHHee
Confidence 99999999999999999999999999999999999999999999999 344444444444444444444444
No 2
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=100.00 E-value=2e-65 Score=486.99 Aligned_cols=262 Identities=33% Similarity=0.564 Sum_probs=200.6
Q ss_pred eeEEEEEeecCCce--EEEEEEcC----CCCCcCCCCcEEEEEEEEeC--CeEEEeEEEEEEEEEEEEEEecCccceEEE
Q 018667 23 RAFVLKLKLQIDMS--TVEIKLSR----SNRIYRPSEPLQGKIVIKSS--SSIFHYGIHLTVNGSANLQVRGGSAGVVES 94 (352)
Q Consensus 23 ~~~~~~~k~~~~m~--~~~I~fd~----~~~vY~~Ge~VsG~V~i~~~--k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~ 94 (352)
.+|.+++.|+++.+ ..+++-++ ..++|++||+|+|+|+|+.. ++++|+||+|++.|+ +|+
T Consensus 3 ~~~~i~i~l~~~~~rk~v~~~~~~~~~~~~~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~------------ie~ 70 (275)
T PF03643_consen 3 PPCDIDIELDDEDSRKKVEVKTDDGKKEKNPIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQ------------IEA 70 (275)
T ss_dssp TTEEEEEEETTCCCS-EEEEE-TTS-EEEEEEEETC--EEEEEEEEESSTS-EEES-EEEEEEEE------------EEE
T ss_pred CceEEEEEECCCcccceEEEECCCCCEEEeceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEe------------EeE
Confidence 48999999988777 56666553 35699999999999999954 599999999999999 889
Q ss_pred eecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEE
Q 018667 95 LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVE 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~e 174 (352)
+|++.++++|++.+.+|+++|+|++|++ |||+|++- ++.||||||++++|||+|||++.|+| +|+++++|
T Consensus 71 ~~~~~k~~~f~~~~~eL~~~G~l~~~~t-~pFeF~~~-------~k~yETY~G~~v~i~Y~lrv~v~R~~--~~i~k~~e 140 (275)
T PF03643_consen 71 FYDSGKPIEFLSLSIELAPPGKLPEGKT-FPFEFPLV-------EKPYETYHGVNVNIRYFLRVTVKRSY--KDISKEQE 140 (275)
T ss_dssp GCCTT-EEEEEEEEEEEE-SEEE-S-EE-EEEEE-SB----------S--EE-SSEEEEEEEEEEE--SS--S-EEEEEE
T ss_pred eccCCCceEeEEeeEEEcCCcccCCCcE-EeeEeCCC-------CCCCccEeeeEEEEEEEEEEEEEccC--CCcceEEE
Confidence 9999999999999999999999999999 99999953 45799999999999999999999999 68999999
Q ss_pred EEEEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEEE
Q 018667 175 FIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHLL 253 (352)
Q Consensus 175 F~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqLi 253 (352)
|||++... .|+. .++++|+.+ -.+.+||++++++. ||++|+|+|+++|++++++|+||||||+
T Consensus 141 f~V~~~~~-------~p~~------~~~ik~evg---ie~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLi 204 (275)
T PF03643_consen 141 FWVQNFSI-------TPES------NQPIKMEVG---IEDCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLI 204 (275)
T ss_dssp EEEE-EB---------------------EEEEEC---ETTTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEE
T ss_pred EEEEeccC-------CCCC------CCCcccccC---CCccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEE
Confidence 99986521 1111 123445432 12348999999987 9999999999999999999999999999
Q ss_pred EEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCccc--cCceEEEEEEEEEEEEcCC
Q 018667 254 RMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVL--AGPFSVEFKVSVVISFRSE 322 (352)
Q Consensus 254 r~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~~--~~~FsV~y~Lnlvvi~e~~ 322 (352)
|+|||++++++++|+|+||++|||||+|+||++|||||+||++++|||+. +++|||+|+|||+++||||
T Consensus 205 R~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IPirl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlide~d 275 (275)
T PF03643_consen 205 RVETCGCGENYAKESTEIQKIEIMDGAPCRGESIPIRLFLPRLFLCPTYKNVNNKFSVEYELNLVLIDEDD 275 (275)
T ss_dssp EEEEECECCCEEEEEEEEEEEEEESS---TT-EEEEEEECCCT-----EEEECTTEEEEEEEEEEEEETT-
T ss_pred EEEEEecCCcccccceEEEEEEeecCCccccceeeEEEEcCCcccCCcchhcCCcEEEEEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999995 7899999999999999986
No 3
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-62 Score=444.47 Aligned_cols=275 Identities=19% Similarity=0.376 Sum_probs=250.2
Q ss_pred eeEEEEEeecCCce--EEEEEEcCC----CCCcCCCCcEEEEEEEE--eCCeEEEeEEEEEEEEEEEEEEecCccceEEE
Q 018667 23 RAFVLKLKLQIDMS--TVEIKLSRS----NRIYRPSEPLQGKIVIK--SSSSIFHYGIHLTVNGSANLQVRGGSAGVVES 94 (352)
Q Consensus 23 ~~~~~~~k~~~~m~--~~~I~fd~~----~~vY~~Ge~VsG~V~i~--~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~ 94 (352)
.+|.+++.++++-+ .++++.++. .++|++||+|+|+|.++ .+++++|+||+|++.|+ +|.
T Consensus 10 ~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGq------------Ie~ 77 (301)
T KOG3063|consen 10 PSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQ------------IEM 77 (301)
T ss_pred CCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEE------------EEE
Confidence 57889999988665 677777763 45999999999999999 58899999999999999 788
Q ss_pred eecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEE
Q 018667 95 LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVE 174 (352)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~e 174 (352)
+|++++.++|.+...+|+.||.|.+.++ |||+|. .+++.+|||.|+++++||++||++.|.+ +|++++++
T Consensus 78 ~~drgn~~eF~~lv~eLa~pGel~~~~~-fpFeF~-------~vekpyEsY~G~NV~lrY~lkvTv~Rr~--~di~ke~d 147 (301)
T KOG3063|consen 78 YYDRGNFHEFTSLVRELARPGELTQSQS-FPFEFP-------HVEKPYESYIGKNVRLRYFLKVTVSRRL--TDIVKEKD 147 (301)
T ss_pred EecCCcHHHHHHHHHhhcCCcceeeccc-CCcccc-------ccccchhhhcCcceEEEEEEEEEEEech--hhhhhhhh
Confidence 9999999999999999999999999987 999999 7899999999999999999999999998 48999999
Q ss_pred EEEEEcCccccCCCCCCceEEEEecccccccccCCCccccc-eEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEE
Q 018667 175 FIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG-FKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHL 252 (352)
Q Consensus 175 F~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~-f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqL 252 (352)
|||+.... +|.. +.+++|+.+ ... +||+.+.++. +|++|+|.|+|+|.+++++|++||++|
T Consensus 148 ~~V~~~~~-------~P~~------nn~IkmeVG----IedCLHIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~i 210 (301)
T KOG3063|consen 148 LVVHNLST-------YPEI------NNSIKMEVG----IEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSI 210 (301)
T ss_pred eeeEeccc-------CCCC------CCceeEeec----hhhceEEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEE
Confidence 99998632 3333 557888753 333 7888888876 899999999999999999999999999
Q ss_pred EEEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCcc--ccCceEEEEEEEEEEEEcCCccccccCC
Q 018667 253 LRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISFRSELSKLHKKS 330 (352)
Q Consensus 253 ir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~--~~~~FsV~y~Lnlvvi~e~~~~~~~~~~ 330 (352)
+|+|+.|.+++...++++|.++|||||+|+|||+|||||||.++++|||+ ++++|||+|+||||++||||
T Consensus 211 ikrEstG~gpn~~~e~eTiakyeIMDGapvrGEsIPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeed-------- 282 (301)
T KOG3063|consen 211 IKRESTGTGPNTYVETETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEED-------- 282 (301)
T ss_pred EEeecccCCCcceeccceeeeEEeccCCCcCCCeeeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhh--------
Confidence 99999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred CCCCcceeEEEeeecEEEEec
Q 018667 331 DPTTPRLWLAMETLPLELVRT 351 (352)
Q Consensus 331 ~~~~~~~~~~t~~~pi~l~r~ 351 (352)
||||++.| |.|||.
T Consensus 283 ----RRYFKQqE---ItLwR~ 296 (301)
T KOG3063|consen 283 ----RRYFKQQE---ITLWRK 296 (301)
T ss_pred ----hhhhhhee---EEEEEe
Confidence 99999999 999996
No 4
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=99.95 E-value=8.9e-26 Score=226.51 Aligned_cols=270 Identities=21% Similarity=0.261 Sum_probs=196.1
Q ss_pred ceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecC-c--------cce---EEEeecceeeE
Q 018667 35 MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-S--------AGV---VESLYGVIKPI 102 (352)
Q Consensus 35 m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~-s--------~g~---~e~~~~~~~~~ 102 (352)
|+.++|.||++..+|++||.|+|+|+++..+++++++|+|++.|.+++.|... + .+. ....|. ...
T Consensus 4 ~~~~~i~~d~~~~iy~~G~~vsG~v~l~~~~~~~~~~i~l~~~G~~~t~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (427)
T KOG3780|consen 4 MSSFEIVLDNPEAIYFPGEPVSGSVVLSTKEPIKVRAIKLQLKGRARTSWSESERGTKLNSKSEGSIKSSTVNYT--AKE 81 (427)
T ss_pred cceEEEEeCCCccccCCCCeEEEEEEEEeCCccceeEEEEEEEEeEEEeecccccccccccccccccccceEEee--ceE
Confidence 55799999999999999999999999999999999999999999999999732 1 110 111121 112
Q ss_pred EEEeee--EEeeCCe--e--eCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEE
Q 018667 103 KILKKS--QEIRTSG--R--IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFI 176 (352)
Q Consensus 103 ~~~~~~--~~l~~~G--~--L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~ 176 (352)
++++.. .+...+| . |++|.|+|||+|+||.+ +|+||+|.+|+|||+|+|+++|+|+. +....+.|.
T Consensus 82 ~y~~~~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~-------~P~Sfeg~~G~irY~vk~~idr~~~~-~~~~~~~~~ 153 (427)
T KOG3780|consen 82 TYLDSKTILWTSSNGSNSRVLPPGNYEFPFSFTLPLN-------LPPSFEGKFGHVRYFVKAEIDRPWKL-NKKNRKPFT 153 (427)
T ss_pred EEeeeeeEEeeccCCCCceecCCCceEEeEeccCCCC-------CCCceeeCCceEEEEEEEEEecCCCC-CccceeeEE
Confidence 333332 2223455 4 89999999999999976 89999999999999999999999985 688999999
Q ss_pred EEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEE
Q 018667 177 VETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLR 254 (352)
Q Consensus 177 V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir 254 (352)
|... .+++..+....++...- -++.....+..+.+.+++.+... +..++.+...+.++ .++..++.+++.|++
T Consensus 154 V~~~-~~ln~~p~~~~~~~~~~----~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q 228 (427)
T KOG3780|consen 154 VIET-VDLNSSPSLLEPIISKA----SKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQ 228 (427)
T ss_pred Eecc-cccccCccccCcchhhh----hheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEEE
Confidence 8765 23332222223322110 11211134457788899999987 88899999999999 469999999999999
Q ss_pred EEEEecCCc----eeEeeeEEEEEEEEeCccc--cCeeEeEEEEcCCCCCCCcc--ccCceEEEEEEEEEEEEcC
Q 018667 255 MESILLGEK----IISETSLIQTTQVADGDVC--RNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISFRS 321 (352)
Q Consensus 255 ~Et~~~~~~----~~~e~t~I~~~eI~dG~p~--rg~~IPi~~~lp~l~~~PT~--~~~~FsV~y~Lnlvvi~e~ 321 (352)
+.++..... ..+..+.......+.+.+. ....+=..+-+|.. +||+ .+..++|+|+|.+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~iP~~--~Ps~~~~~~~i~v~y~l~v~~~~~~ 301 (427)
T KOG3780|consen 229 KISYLAFSYGEHTKTKKSEKTLIKSRGSLEVAPRSEDKFEKELRIPPV--PPSILPDTPIIRVEYELKVTLKTSS 301 (427)
T ss_pred EEEEEeecCCccccceeeeeEEeeeccccccCCCCccccceEEEcCCC--CCccCCCCceEEEEEEEEEEEecCc
Confidence 999997653 2333333333333344443 33444444568888 4777 4799999999999998875
No 5
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.88 E-value=1e-23 Score=180.74 Aligned_cols=135 Identities=23% Similarity=0.339 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEec-CccceEEEe--ecce---eeEEEEeeeEEe
Q 018667 38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRG-GSAGVVESL--YGVI---KPIKILKKSQEI 111 (352)
Q Consensus 38 ~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~-~s~g~~e~~--~~~~---~~~~~~~~~~~l 111 (352)
++|.||++.++|++||.|+|+|.|...++++.++|+|++.|.+.+.|.. ...+..... .... ....+++....+
T Consensus 1 ~~I~ld~~~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (149)
T PF00339_consen 1 FEIELDNPKPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL 80 (149)
T ss_dssp EEEEES-SEEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred CEEEECCCCCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence 6899999999999999999999999999999999999999999999973 222211110 0000 011222222111
Q ss_pred e----CCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEc
Q 018667 112 R----TSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD 180 (352)
Q Consensus 112 ~----~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~ 180 (352)
. .++.|++|.|+|||+|+||.+ +|+||+|.+|+|+|.|+|.|+|||. .+...+++|+|..+
T Consensus 81 ~~~~~~~~~l~~G~~~fpF~f~LP~~-------lP~S~~~~~g~I~Y~l~a~l~~~~~-~~~~~~~~~~v~~~ 145 (149)
T PF00339_consen 81 WGSEDGPNILPPGEYEFPFEFQLPSN-------LPSSFEGSHGSIRYKLKATLDRPGK-KDHKAKREFTVVEP 145 (149)
T ss_dssp HHH--------C-TTEEEEEE---TT-------S--SEEEE-SEEEEEEEEEESSTTS-E--CGGEEEEEEEE
T ss_pred eeeccceecccCCCEEEEEEEECCCC-------CCceEeccCcCEEEEEEEEEECCCC-CCcEEEEEEEEECc
Confidence 1 145899999999999999976 8999999999999999999999996 57999999999775
No 6
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.57 E-value=5.8e-06 Score=69.10 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=76.7
Q ss_pred cceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCc--eeEeeeEEEEEEEEeCccc--cCeeE
Q 018667 214 GGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEK--IISETSLIQTTQVADGDVC--RNMTL 287 (352)
Q Consensus 214 ~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~--~~~e~t~I~~~eI~dG~p~--rg~~I 287 (352)
+++++++.+++. |..+|.+...+.+. .+..+|+.|++.|+++.++....+ ..+..+.+..- ...+.+. .+..+
T Consensus 3 g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~ 81 (136)
T PF02752_consen 3 GKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAK-SKNCGVDPGSSGSF 81 (136)
T ss_dssp EEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEE-EECCEB-B-TTEEE
T ss_pred CEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEE-EecCCccCCCCceE
Confidence 567788999987 99999999999998 588999999999999999997653 32322333322 3333333 33333
Q ss_pred e--EEEEcC-CCCCCCcc--ccCceEEEEEEEEEEEEc-CCccccccCCCCCCcceeEEEeeecEEEE
Q 018667 288 P--IYVILP-RLLTCPTV--LAGPFSVEFKVSVVISFR-SELSKLHKKSDPTTPRLWLAMETLPLELV 349 (352)
Q Consensus 288 P--i~~~lp-~l~~~PT~--~~~~FsV~y~Lnlvvi~e-~~~~~~~~~~~~~~~~~~~~t~~~pi~l~ 349 (352)
- +.|-+| .+ +||. .++.++|+|+|.+.+.+. .. .-+.-++||.|.
T Consensus 82 ~~~~~l~lP~~~--~~s~~~~~~~i~v~Y~l~v~~~~~~~~---------------~~~~~~~PI~I~ 132 (136)
T PF02752_consen 82 EFNIQLQLPSNL--PPSTSTNSRLIQVEYQLEVTVKLSGCT---------------SDLRLELPITIG 132 (136)
T ss_dssp EEEEEE-----B-------CGGGSEEEEEEEEEEEEEETTS---------------EEEEEEEEEEEE
T ss_pred EEEEEEcCCCcc--CcccccCCcEEEEEEEEEEEEEECCce---------------eEEEEEccEEEE
Confidence 3 556778 66 7887 899999999999999998 34 678889999885
No 7
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=98.20 E-value=0.0004 Score=70.56 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=66.9
Q ss_pred EEEeee-EeCCCceEEEEEEEEec-cCeEEEEEEEEEEEEEecCC---ceeEee--eEEEEEEEEeCccccCeeEeEEEE
Q 018667 220 GKMSTQ-CSLLDPITGELTVEASS-VPIHSIDIHLLRMESILLGE---KIISET--SLIQTTQVADGDVCRNMTLPIYVI 292 (352)
Q Consensus 220 ~~~~~~-~~~~d~i~G~i~~~~s~-~~Ik~ielqLir~Et~~~~~---~~~~e~--t~I~~~eI~dG~p~rg~~IPi~~~ 292 (352)
+.+.+. +.++|.|.|.+.|..+. .++..+-+.|-..|++...- +..+.. +.-.-.+-.+-..-.-..+++.+-
T Consensus 308 ~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~f~l~ 387 (415)
T PF08737_consen 308 LSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHHEICLDSRSRTSFSLP 387 (415)
T ss_pred EEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEeeeecCCcceEEEEee
Confidence 333443 69999999999999888 99999999999999865321 001111 111111221111112225888887
Q ss_pred cCCCCCCCccccCceEEEEEEEEEEEE
Q 018667 293 LPRLLTCPTVLAGPFSVEFKVSVVISF 319 (352)
Q Consensus 293 lp~l~~~PT~~~~~FsV~y~Lnlvvi~ 319 (352)
+|.- .||+|.++.|+++|.|++-.+.
T Consensus 388 IP~~-~tp~F~T~~v~lkW~LrfeFv~ 413 (415)
T PF08737_consen 388 IPLS-ATPQFQTSGVSLKWRLRFEFVT 413 (415)
T ss_pred CCCC-CCCceEeCCEEEEEEEEEEEEe
Confidence 7765 6799999999999999998765
No 8
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=98.16 E-value=0.00011 Score=68.43 Aligned_cols=124 Identities=18% Similarity=0.167 Sum_probs=83.4
Q ss_pred ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeC-CeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeE
Q 018667 31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSS-SSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQ 109 (352)
Q Consensus 31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~-k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~ 109 (352)
+-.|-++++-.|+++ .|.|||+|+|.|.|+.+ ..-++.+|.+.+.=.+...-.. -+ + .....+ ...
T Consensus 8 ~GiG~akVDT~L~~~--~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d-----~~-~---~~~~~~--~~~ 74 (218)
T PF07070_consen 8 IGIGGAKVDTVLEKP--SVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDD-----KE-Y---TQEVEL--ARV 74 (218)
T ss_pred cCCCCceEEEEECCC--CccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCC-----Ce-E---EEEEEE--EEE
Confidence 334445788888765 69999999999999954 5778899999988775442110 00 0 011111 223
Q ss_pred EeeCCeeeCCC-ceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEE
Q 018667 110 EIRTSGRIGSG-TTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVET 179 (352)
Q Consensus 110 ~l~~~G~L~~G-~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~ 179 (352)
.++.+-.|.+| ++++||+|+||-+ .|-|- +..+|+++-.++=.+. .|-...-.+.|+.
T Consensus 75 ~v~~~f~I~~ge~~~iPF~~~lP~e-------tPiT~----~~~~v~l~T~LdI~~a-vD~~D~D~i~V~P 133 (218)
T PF07070_consen 75 RVSGPFTIEPGEEKEIPFSFPLPWE-------TPITE----GGMRVWLRTGLDIAGA-VDPGDLDPIEVEP 133 (218)
T ss_pred EeCCCEEECCCCEEEEeEEEECCCC-------CCccC----CCcEEEEEEEEEeCCC-CCCCCceeEEEeC
Confidence 55566677666 6789999999966 34444 5789999988887775 3666666666643
No 9
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.14 E-value=0.0001 Score=61.54 Aligned_cols=124 Identities=14% Similarity=0.226 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCee
Q 018667 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR 116 (352)
Q Consensus 37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~ 116 (352)
.+.+.+++ ..|.+||.+.-.+.|.+.+..+.++|++.+.-.....-... . . +.......+.. ....+.
T Consensus 6 ~~~~~i~~--~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~--~-~----~~~~~~~~v~~---~~~~~~ 73 (136)
T PF02752_consen 6 SLSISIPR--TAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGG--K-D----ESKSEKRVVAK---SKNCGV 73 (136)
T ss_dssp EEEEEES---SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS-----------S-EEEEEEEEE---EECCEB
T ss_pred EEEEEECC--CEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeec--c-c----cceEEEEEEEE---EecCCc
Confidence 45666655 47999999999999999999999999999999864421100 0 0 00011111111 112222
Q ss_pred eCCCceEEe--eEEEcCCCCCccccccccce--EEeeEEEEEEEEEEEEecccCCCcceEEEEEEEE
Q 018667 117 IGSGTTEVP--FSMNLKQHGEENLERFYETF--HGADINIQYLVTVDIMRGYLHKSLSATVEFIVET 179 (352)
Q Consensus 117 L~~G~~~fp--F~F~Lp~~~~~~~~~l~eSy--~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~ 179 (352)
.+.+...|- ..|.||++ +++|. .|...+|.|.|++++.-+....++..+.+.++..
T Consensus 74 ~~~~~~~~~~~~~l~lP~~-------~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~ 133 (136)
T PF02752_consen 74 DPGSSGSFEFNIQLQLPSN-------LPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGS 133 (136)
T ss_dssp -B-TTEEEEEEEEE------------B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB
T ss_pred cCCCCceEEEEEEEcCCCc-------cCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEe
Confidence 233444455 77888754 55566 8999999999999998774334566666666543
No 10
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=97.57 E-value=0.0068 Score=58.90 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=117.7
Q ss_pred CceEEeeEEEcCCCCCcccc---ccccceEEeeEEEEEEEEEEEEecccCCCcc-eEEEEEE---EEcCccccCCCCCCc
Q 018667 120 GTTEVPFSMNLKQHGEENLE---RFYETFHGADINIQYLVTVDIMRGYLHKSLS-ATVEFIV---ETDKADLLERPVSPE 192 (352)
Q Consensus 120 G~~~fpF~F~Lp~~~~~~~~---~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~-~~~eF~V---~~~~~~l~~~~~~p~ 192 (352)
|.+.|||.|+.|+++ +.. +.-+.=.|+---|.|.||+-+--.---+.+. ......+ +..+. ...|.
T Consensus 107 G~nAyPF~f~~pp~~--P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~IRKvqyAP~-----~~Gpq 179 (402)
T KOG3865|consen 107 GSNAYPFTFEFPPNL--PCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVIRKVQYAPL-----EPGPQ 179 (402)
T ss_pred CCCCCceEEeCCCCC--CceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeeeeeeeecCC-----CCCCC
Confidence 667799999999872 111 1223457888889999999884332111111 1112222 22111 11122
Q ss_pred eEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEE-ecC-CceeEee
Q 018667 193 MVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESI-LLG-EKIISET 268 (352)
Q Consensus 193 pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~-~~~-~~~~~e~ 268 (352)
| +.+-...-.++.++++++..+++- ++-+++|.-.+++. +++..+|.|++.+.+...+ .-. ..| .
T Consensus 180 P--------~~~v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy---~ 248 (402)
T KOG3865|consen 180 P--------SAEVSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQY---K 248 (402)
T ss_pred c--------hhHhhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccc---c
Confidence 2 111111112356789999999997 67799999999999 6899999999998887633 322 233 4
Q ss_pred eEEEEEEEEeCccc-cCeeEeEEEEcCCC----------C------------CCCcc-------ccCceEEEEEEEEEEE
Q 018667 269 SLIQTTQVADGDVC-RNMTLPIYVILPRL----------L------------TCPTV-------LAGPFSVEFKVSVVIS 318 (352)
Q Consensus 269 t~I~~~eI~dG~p~-rg~~IPi~~~lp~l----------~------------~~PT~-------~~~~FsV~y~Lnlvvi 318 (352)
.++...|--||+++ +|.+.-=-++|=++ + .+.|. ..=-+=|+|.+.+-+.
T Consensus 249 ~~VA~~E~~eGc~v~Pgstl~Kvf~l~PllanN~dkrGlALDG~lKhEDtnLASSTii~~~~~re~lGI~VsY~VkVkL~ 328 (402)
T KOG3865|consen 249 KPVAMEETDEGCPVAPGSTLSKVFTLTPLLANNKDKRGLALDGKLKHEDTNLASSTIIREGADREALGILVSYKVKVKLV 328 (402)
T ss_pred ceeeeeecccCCccCCCCeeeeeEEechhhhcCcccccccccccccccccccchhheecCCCCcceeEEEEEEEEEEEEE
Confidence 57888888898665 66664433333111 0 01122 1123568888888887
Q ss_pred EcC---CccccccCCCCCCcceeEEEeeecEEEEec
Q 018667 319 FRS---ELSKLHKKSDPTTPRLWLAMETLPLELVRT 351 (352)
Q Consensus 319 ~e~---~~~~~~~~~~~~~~~~~~~t~~~pi~l~r~ 351 (352)
... | -+.+| +|..|.+.
T Consensus 329 vs~ll~g---------------e~~~E-lPF~LmhP 348 (402)
T KOG3865|consen 329 VSRLLGG---------------EVAAE-LPFTLMHP 348 (402)
T ss_pred EecccCC---------------ceeee-cceEEecC
Confidence 763 5 56666 78887653
No 11
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=97.03 E-value=0.0053 Score=52.07 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCceeEeeeEEE---------------EE--EE-----EeCccc
Q 018667 226 CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKIISETSLIQ---------------TT--QV-----ADGDVC 282 (352)
Q Consensus 226 ~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~---------------~~--eI-----~dG~p~ 282 (352)
|..+|.|.|.|.+. ...+++++|.++|.=++.+..........+... +. .+ ..+...
T Consensus 12 y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 91 (149)
T PF00339_consen 12 YFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQLWGSEDGPNILP 91 (149)
T ss_dssp EESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHHHHH--------
T ss_pred ECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEeeeeccceeccc
Confidence 89999999999998 456999999999999997776532111111110 00 01 112222
Q ss_pred cC-eeEeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecE
Q 018667 283 RN-MTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPL 346 (352)
Q Consensus 283 rg-~~IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi 346 (352)
.| -..||.+.||.- ++||+....-+|.|.|...+ +.. ...+...+|.+.+.+.+++
T Consensus 92 ~G~~~fpF~f~LP~~-lP~S~~~~~g~I~Y~l~a~l-~~~------~~~~~~~~~~~~v~~~id~ 148 (149)
T PF00339_consen 92 PGEYEFPFEFQLPSN-LPSSFEGSHGSIRYKLKATL-DRP------GKKDHKAKREFTVVEPIDL 148 (149)
T ss_dssp C-TTEEEEEE---TT-S--SEEEE-SEEEEEEEEEE-SST------TSE--CGGEEEEEEEEEEB
T ss_pred CCCEEEEEEEECCCC-CCceEeccCcCEEEEEEEEE-ECC------CCCCcEEEEEEEEECcccC
Confidence 44 459999999954 58888666669999999999 222 3567778888998887654
No 12
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=96.97 E-value=0.0024 Score=58.19 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=40.1
Q ss_pred eeCCeeeCCCceEEeeEEEcCCCCCccccccccceE---EeeEEEEEEEEEEEEe
Q 018667 111 IRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH---GADINIQYLVTVDIMR 162 (352)
Q Consensus 111 l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~---G~~g~IrY~vkv~I~R 162 (352)
++.+-.|..|.|.|||++.||.+ +|.|-. +..++|.|.++|+..-
T Consensus 41 l~~~t~l~~G~h~fPFS~LiPG~-------LPaS~~lgs~~l~~I~Yel~A~a~~ 88 (191)
T PF13002_consen 41 LTHPTTLTKGSHAFPFSYLIPGH-------LPASMDLGSTPLVSIKYELKAEATY 88 (191)
T ss_pred ecCccccCCCcccCCeeEECCCC-------CccccccCCCCcEEEEEEEEEEEEE
Confidence 45566799999999999999976 999999 8999999999999966
No 13
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=96.28 E-value=0.28 Score=45.79 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=77.4
Q ss_pred cccceEEEEEEeee-EeCCCceEEEEEEE--EeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEEEEeC-ccccCee-
Q 018667 212 KSGGFKVTGKMSTQ-CSLLDPITGELTVE--ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADG-DVCRNMT- 286 (352)
Q Consensus 212 ~~~~f~I~~~~~~~-~~~~d~i~G~i~~~--~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~eI~dG-~p~rg~~- 286 (352)
+.+.-+|.-.+... +..++.+.|.+++. .++-+|.+|++.|+.+-....+++..+..-++.++++.++ .+..|+.
T Consensus 9 GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~ 88 (218)
T PF07070_consen 9 GIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEK 88 (218)
T ss_pred CCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEE
Confidence 34556677777765 89999999999999 6899999999999987666656666666778999999998 4446665
Q ss_pred -EeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCC
Q 018667 287 -LPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322 (352)
Q Consensus 287 -IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~ 322 (352)
|||.+-||.- +|-.. + .+.|.|.--+....+
T Consensus 89 ~iPF~~~lP~e--tPiT~-~--~~~v~l~T~LdI~~a 120 (218)
T PF07070_consen 89 EIPFSFPLPWE--TPITE-G--GMRVWLRTGLDIAGA 120 (218)
T ss_pred EEeEEEECCCC--CCccC-C--CcEEEEEEEEEeCCC
Confidence 9999999876 55222 2 344555544444443
No 14
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=95.07 E-value=0.47 Score=45.86 Aligned_cols=115 Identities=16% Similarity=0.260 Sum_probs=60.2
Q ss_pred eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667 24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK 103 (352)
Q Consensus 24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~ 103 (352)
+..|+.-+++ .+.|+|.-....|.=.|.+.|+|.+...+ ++.+.+.|.+.=.-.+ |.-+.+.... ..
T Consensus 155 ~ik~evgie~---~lhief~~~k~~~~l~d~i~G~i~f~lv~-~kIk~~elqLiR~Et~-------g~~~~~~~e~--t~ 221 (275)
T PF03643_consen 155 PIKMEVGIED---CLHIEFEYDKSKYHLKDVITGKIYFLLVR-IKIKSMELQLIRVETC-------GCGENYAKES--TE 221 (275)
T ss_dssp -EEEEECETT---TEEEEEEES-SEEETT-EEEEEEEEEEES-S-EEEEEEEEEEEEEE-------CECCCEEEEE--EE
T ss_pred CcccccCCCc---cEEEEEEEcccceECCCCEEEEEEEEEEe-ecceEEEEEEEEEEEE-------ecCCcccccc--eE
Confidence 3445554555 36666654555788899999999887432 4455555555444211 1111111100 11
Q ss_pred EEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEee--EEEEEEEEEEEE
Q 018667 104 ILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD--INIQYLVTVDIM 161 (352)
Q Consensus 104 ~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~--g~IrY~vkv~I~ 161 (352)
+. ..++ -+|.--.|.. .||.+-||.- .+.+||...+ .+|+|+|.+.+-
T Consensus 222 i~--~~eI-mDG~p~rge~-IPirl~l~~l------~l~Pt~~~~~~~FsV~y~lnlvli 271 (275)
T PF03643_consen 222 IQ--KIEI-MDGAPCRGES-IPIRLFLPRL------FLCPTYKNVNNKFSVEYELNLVLI 271 (275)
T ss_dssp EE--EEEE-ESS---TT-E-EEEEEECCCT-----------EEEECTTEEEEEEEEEEEE
T ss_pred EE--EEEe-ecCCccccce-eeEEEEcCCc------ccCCcchhcCCcEEEEEEEEEEEE
Confidence 11 1122 3566677877 9999999854 5899999665 999999998873
No 15
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=94.54 E-value=0.12 Score=52.99 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.5
Q ss_pred CCCcCCCCcEEEEEEEE--eCCeEEEeEEEEEEEEEEEE
Q 018667 46 NRIYRPSEPLQGKIVIK--SSSSIFHYGIHLTVNGSANL 82 (352)
Q Consensus 46 ~~vY~~Ge~VsG~V~i~--~~k~~~h~gI~i~~~G~a~~ 82 (352)
.+=|..||.|.|-|+|+ +.++++..=..|.++|.+.+
T Consensus 157 l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v 195 (438)
T PF04425_consen 157 LKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISV 195 (438)
T ss_pred cccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEE
Confidence 34699999999999999 67899999999999999876
No 16
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.27 E-value=1.1 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCcCCCCcEEEEEEEEe
Q 018667 38 VEIKLSRSNRIYRPSEPLQGKIVIKS 63 (352)
Q Consensus 38 ~~I~fd~~~~vY~~Ge~VsG~V~i~~ 63 (352)
+-|..|++ +|+|||+|.-++.+..
T Consensus 2 ~~i~TDr~--iYrPGetV~~~~~~~~ 25 (99)
T PF01835_consen 2 IFIQTDRP--IYRPGETVHFRAIVRD 25 (99)
T ss_dssp EEEEESSS--EE-TTSEEEEEEEEEE
T ss_pred EEEECCcc--CcCCCCEEEEEEEEec
Confidence 44666776 9999999999998873
No 17
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=93.98 E-value=0.16 Score=46.94 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCcCCCCcEEEEEEEEeCC-eEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCeeeCCC-ceEE
Q 018667 47 RIYRPSEPLQGKIVIKSSS-SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSG-TTEV 124 (352)
Q Consensus 47 ~vY~~Ge~VsG~V~i~~~k-~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~L~~G-~~~f 124 (352)
.+|+||+.|.|.|.|..++ .-.++.|.+++.-+-...... +.|.-+ -.+.+- .+...=++.+| ++.|
T Consensus 42 ~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdD-e~~~~~--------~t~~n~--rl~~~fTIqpgEe~~f 110 (270)
T COG4326 42 EVLYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDD-ERGQQQ--------GTLANW--RLPYAFTIQPGEERNF 110 (270)
T ss_pred ccccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEecc-ccceeE--------EEEEEE--eecceEEecCCceEec
Confidence 4799999999999999443 444556666655442211111 111000 011110 11111145444 7889
Q ss_pred eeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEc
Q 018667 125 PFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD 180 (352)
Q Consensus 125 pF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~ 180 (352)
||+|.||-+ .|=|+ |++.-+|+--+|-...- |-+.+--.+|..+
T Consensus 111 pf~l~lP~~-------tPvT~----G~~~V~v~TgLDI~~ai-dp~D~D~l~Vr~h 154 (270)
T COG4326 111 PFELSLPWN-------TPVTI----GDAKVWVETGLDIALAI-DPTDKDILTVRPH 154 (270)
T ss_pred cEEEecCCC-------Cceee----cceeEEEEeccchhccC-CCcccceEEEecc
Confidence 999999976 34443 56666665555544432 3444444555433
No 18
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=88.81 E-value=6.2 Score=40.32 Aligned_cols=119 Identities=13% Similarity=0.240 Sum_probs=71.6
Q ss_pred eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667 24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK 103 (352)
Q Consensus 24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~ 103 (352)
+...++...... -..+.|.+ +.|+-||+|.|.+.++....+++.++.+.++-.-.+.-..+-.+.. .. .+ -...
T Consensus 293 ~~~y~I~~n~~~-va~~~LsK--~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~-~~-~~-~~~~ 366 (415)
T PF08737_consen 293 PNSYNIRRNGQR-VARLSLSK--PAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSA-KI-NR-VTRK 366 (415)
T ss_pred CcEEEEEECCeE-EEEEEecC--CCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccc-cc-cc-cEEE
Confidence 344455554432 35555544 4899999999999999766788999988888875542110000000 00 00 0011
Q ss_pred EEeeeEEeeCCeeeCCCce-EEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEE
Q 018667 104 ILKKSQEIRTSGRIGSGTT-EVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIM 161 (352)
Q Consensus 104 ~~~~~~~l~~~G~L~~G~~-~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~ 161 (352)
.+...-+. ..+.. .-+|.+.+|.+ .+++|.-..+.++|.|+.+.-
T Consensus 367 ~~~~~~e~------~~~~~~~~~f~l~IP~~-------~tp~F~T~~v~lkW~LrfeFv 412 (415)
T PF08737_consen 367 VHAEHHEI------CLDSRSRTSFSLPIPLS-------ATPQFQTSGVSLKWRLRFEFV 412 (415)
T ss_pred EEEEEeee------ecCCcceEEEEeeCCCC-------CCCceEeCCEEEEEEEEEEEE
Confidence 12221122 11222 46899999977 678999999999999998764
No 19
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=88.06 E-value=15 Score=36.27 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEE
Q 018667 37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQV 84 (352)
Q Consensus 37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~w 84 (352)
.+++.+|+. +|+-||.++-.|.|+++.....+.|++.+.-.|.+..
T Consensus 196 hLevsLDkE--iYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~L 241 (402)
T KOG3865|consen 196 HLEVSLDKE--IYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICL 241 (402)
T ss_pred EEEEEecch--heecCCceeEEEEEecCCcceeeeeEEEeEeeceEEE
Confidence 577888776 8999999999999998888889999999998888764
No 20
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=87.02 E-value=9.2 Score=35.06 Aligned_cols=96 Identities=8% Similarity=0.181 Sum_probs=66.7
Q ss_pred EEEEEEEEEEecC-----------CceeEeeeEEEEEEEEeCcc--ccCee-EeEEEEcCCCCCCCccc---cCceEEEE
Q 018667 249 DIHLLRMESILLG-----------EKIISETSLIQTTQVADGDV--CRNMT-LPIYVILPRLLTCPTVL---AGPFSVEF 311 (352)
Q Consensus 249 elqLir~Et~~~~-----------~~~~~e~t~I~~~eI~dG~p--~rg~~-IPi~~~lp~l~~~PT~~---~~~FsV~y 311 (352)
.|+|++.-++.-. ..-....+++++.++....- .+|.- -||-..||+- ++||+. +..-+|+|
T Consensus 2 ~l~l~~~v~~~KPf~~~~~~~~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~LiPG~-LPaS~~lgs~~l~~I~Y 80 (191)
T PF13002_consen 2 TLSLIQKVTYKKPFVPPSPVISHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSYLIPGH-LPASMDLGSTPLVSIKY 80 (191)
T ss_pred eEEEEEEEeecCCCCCCChhhCcChhHhccceeeeecceecCccccCCCcccCCeeEECCCC-CccccccCCCCcEEEEE
Confidence 4666666655432 01233468899999998854 36654 9999999987 788887 99999999
Q ss_pred EEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEec
Q 018667 312 KVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT 351 (352)
Q Consensus 312 ~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r~ 351 (352)
+|.-.+...+. + .++.+.+...+.-+.||.+-|.
T Consensus 81 el~A~a~~~~~--~----~~~~~~~~~~~~~~~pl~V~Rs 114 (191)
T PF13002_consen 81 ELKAEATYKDP--R----RGSSSSKPRVLKLKRPLPVKRS 114 (191)
T ss_pred EEEEEEEEccC--c----cccCCCcceeEEEeeeEEEEEe
Confidence 99999999543 0 0112222356777788888885
No 21
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=78.41 E-value=75 Score=31.85 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=77.8
Q ss_pred EEEEEeee---EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCcee-------------------EeeeEEEEE
Q 018667 218 VTGKMSTQ---CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKII-------------------SETSLIQTT 274 (352)
Q Consensus 218 I~~~~~~~---~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~~~-------------------~e~t~I~~~ 274 (352)
+.+.++.. +..++++.|++.+. ....+++.|.+++.=++.....+... +..++....
T Consensus 7 ~~i~~d~~~~iy~~G~~vsG~v~l~~~~~~~~~~i~l~~~G~~~t~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 86 (427)
T KOG3780|consen 7 FEIVLDNPEAIYFPGEPVSGSVVLSTKEPIKVRAIKLQLKGRARTSWSESERGTKLNSKSEGSIKSSTVNYTAKETYLDS 86 (427)
T ss_pred EEEEeCCCccccCCCCeEEEEEEEEeCCccceeEEEEEEEEeEEEeecccccccccccccccccccceEEeeceEEEeee
Confidence 34445432 67899999999998 56799999999999766444322100 001111111
Q ss_pred E-----EEeCccc----cCe-eEeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeee
Q 018667 275 Q-----VADGDVC----RNM-TLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETL 344 (352)
Q Consensus 275 e-----I~dG~p~----rg~-~IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~ 344 (352)
+ --+|... .|. +.||.+.||.- ++||+....=.|+|.|.+.+-= ..+.|...++.+.+.+++
T Consensus 87 ~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~-~P~Sfeg~~G~irY~vk~~idr-------~~~~~~~~~~~~~V~~~~ 158 (427)
T KOG3780|consen 87 KTILWTSSNGSNSRVLPPGNYEFPFSFTLPLN-LPPSFEGKFGHVRYFVKAEIDR-------PWKLNKKNRKPFTVIETV 158 (427)
T ss_pred eeEEeeccCCCCceecCCCceEEeEeccCCCC-CCCceeeCCceEEEEEEEEEec-------CCCCCccceeeEEEeccc
Confidence 1 1134332 333 48999999988 7778866655999999986533 357888888888877754
No 22
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=55.81 E-value=17 Score=27.29 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=33.0
Q ss_pred cCCceEEEEEEcCCCCCcCCCCcEEEEEE-EEeCCeEEEeEEEEEEEE
Q 018667 32 QIDMSTVEIKLSRSNRIYRPSEPLQGKIV-IKSSSSIFHYGIHLTVNG 78 (352)
Q Consensus 32 ~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~-i~~~k~~~h~gI~i~~~G 78 (352)
..++ .++|.+++..+ .|....|.|. |-++++...+||++.++-
T Consensus 9 ~~G~-~V~IvlK~DQ~---tG~lt~G~V~diLT~s~~Hp~GIKVrL~d 52 (62)
T TIGR03833 9 KPGL-SVDIVLKQDQR---TGKLTRGIVKDILTNSPTHPHGIKVRLED 52 (62)
T ss_pred CCCC-EEEEEEeccCC---CCceeeEEhhhhhcCCCCCCCceEEEEec
Confidence 3445 48899988754 8999999994 446678889999999853
No 23
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=49.32 E-value=2.1e+02 Score=34.58 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCcCCCCcEEEEEEEE--eCC-eEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeC
Q 018667 37 TVEIKLSRSNRIYRPSEPLQGKIVIK--SSS-SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRT 113 (352)
Q Consensus 37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~--~~k-~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~ 113 (352)
.+++..=.+.++|+|||+|...+.++ .++ .++-.-+++.+..- +-..+-...+..+.
T Consensus 393 ~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~P--------------------dG~~~~~~~~~~~~ 452 (1621)
T COG2373 393 GLKVYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDP--------------------DGSVLRTLTITLDE 452 (1621)
T ss_pred ceEEEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECC--------------------CCcEEEEEEEeccc
Q ss_pred CeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEcCccccCCCCCCce
Q 018667 114 SGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEM 193 (352)
Q Consensus 114 ~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~~~~l~~~~~~p~p 193 (352)
.|- +-|+|+||.+ ...| .|.+++... .+...-+..|-|.....
T Consensus 453 ~G~-------~~~~~~l~~n----------a~tG-----~w~l~~~~~----~~~~~~s~~f~V~df~p----------- 495 (1621)
T COG2373 453 EGL-------YELSFPLPEN----------ALTG-----GYTLELYTG----GKSAVISMSFRVEDFIP----------- 495 (1621)
T ss_pred cCc-------eEEeeeCCCC----------CCcc-----eEEEEEEeC----CccceeeeeEEhhHhCC-----------
Q ss_pred EEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEE--EEEE
Q 018667 194 VVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIH--LLRM 255 (352)
Q Consensus 194 v~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielq--Lir~ 255 (352)
+.|+|...++.. +..++++.+++... +...|...-.++ |..+
T Consensus 496 --------------------~r~~i~l~~~k~~~~~g~~v~~~v~~~yL~GaPa~g~~~~~~l~lr 541 (1621)
T COG2373 496 --------------------DRFKINLTLDKTEWVPGKDVKIKVDLRYLYGAPAAGLTVQGELDLR 541 (1621)
T ss_pred --------------------ceEEEecccccccccCCCcEEEEEEEEecCCCcccCceeeeEEEee
No 24
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=48.74 E-value=61 Score=34.30 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=35.7
Q ss_pred CCCCcCCCCcEEEEEEEE----eCC-eEEEeEEEEEEEEEEEEEEecCccce
Q 018667 45 SNRIYRPSEPLQGKIVIK----SSS-SIFHYGIHLTVNGSANLQVRGGSAGV 91 (352)
Q Consensus 45 ~~~vY~~Ge~VsG~V~i~----~~k-~~~h~gI~i~~~G~a~~~ws~~s~g~ 91 (352)
....|++||+.+|+|++. ... .+...|-.+...|.+.+..+..+.|.
T Consensus 242 ~s~~v~~Ge~~~a~vvL~a~ds~~~P~~~vnG~~l~~~G~g~~~~~aggvGe 293 (523)
T TIGR03517 242 KSDAVFAGETYEAEVVLGASDSTLQPTMFVNGQLLTVEGIGVYTFKAGGVGK 293 (523)
T ss_pred CCceeecCCeEEEEEEEEecCCCcCceEEECCeEcccCCcEEEEEecCCcee
Confidence 456899999999999998 223 38888888877888777776555553
No 25
>PF09962 DUF2196: Uncharacterized conserved protein (DUF2196); InterPro: IPR019240 A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895 from COG. The function is unknown.
Probab=47.09 E-value=28 Score=26.20 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=32.9
Q ss_pred cCCceEEEEEEcCCCCCcCCCCcEEEEE-EEEeCCeEEEeEEEEEEE
Q 018667 32 QIDMSTVEIKLSRSNRIYRPSEPLQGKI-VIKSSSSIFHYGIHLTVN 77 (352)
Q Consensus 32 ~~~m~~~~I~fd~~~~vY~~Ge~VsG~V-~i~~~k~~~h~gI~i~~~ 77 (352)
..++ .++|.+++. -..|+...|.| .|-++++...+||++.++
T Consensus 10 ~~G~-~V~IVlK~d---Q~tg~lt~GiV~~iLT~s~~HP~GIKVrL~ 52 (62)
T PF09962_consen 10 KPGI-TVEIVLKQD---QRTGKLTEGIVKDILTNSPTHPHGIKVRLE 52 (62)
T ss_pred cCCC-EEEEEECCC---CCcCccccEEhheeecCCCCCCCCcEEEec
Confidence 3444 488888876 46799999999 455777899999999986
No 26
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=43.01 E-value=3.8e+02 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=19.4
Q ss_pred eEEEEEEeeeEeCCCceEEEEEEEE
Q 018667 216 FKVTGKMSTQCSLLDPITGELTVEA 240 (352)
Q Consensus 216 f~I~~~~~~~~~~~d~i~G~i~~~~ 240 (352)
.++.++++-.+.-+.|+.|.+++..
T Consensus 227 ~~~~~~v~a~y~ygkpV~g~~~v~~ 251 (1436)
T KOG1366|consen 227 KELEVTVCARYTYGKPVTGKATVSF 251 (1436)
T ss_pred ceeEEEEeeeeecCCcccceEEEEE
Confidence 3467888877888999999977763
No 27
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=3.7e+02 Score=25.85 Aligned_cols=123 Identities=18% Similarity=0.281 Sum_probs=73.2
Q ss_pred EEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecc---eeeE
Q 018667 26 VLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGV---IKPI 102 (352)
Q Consensus 26 ~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~---~~~~ 102 (352)
.|+.=+++ .+.|+|.-+...|.=-|.|-|++-.-.- +++++-..+.+.-. ++.|.-...+.. ...+
T Consensus 164 kmeVGIed---CLHIEFEYnKskYhLkdvIvGkIYFlLv-RikIk~Mel~iikr-------EstG~gpn~~~e~eTiaky 232 (301)
T KOG3063|consen 164 KMEVGIED---CLHIEFEYNKSKYHLKDVIVGKIYFLLV-RIKIKHMELSIIKR-------ESTGTGPNTYVETETIAKY 232 (301)
T ss_pred eEeechhh---ceEEEEEecccccchhheEEeeEEEEEE-EEEeeeeEEEEEEe-------ecccCCCcceeccceeeeE
Confidence 45555555 5889999777789999999999966632 33334344444333 233321111111 1122
Q ss_pred EEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceE--EeeEEEEEEEEEEE----EecccCCCcceEEEEE
Q 018667 103 KILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDI----MRGYLHKSLSATVEFI 176 (352)
Q Consensus 103 ~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~--G~~g~IrY~vkv~I----~Rp~~~~d~~~~~eF~ 176 (352)
+++ +|.=-.|++ +|-..-|-.. .+-+++. ++..+|+|++...+ +|.+. | ..|.+
T Consensus 233 eIM--------DGapvrGEs-IPiRlFLagY------dlTPtmrdinkkFsVkyyLnLVlvDeedRRYF-K----QqEIt 292 (301)
T KOG3063|consen 233 EIM--------DGAPVRGES-IPIRLFLAGY------DLTPTMRDINKKFSVKYYLNLVLVDEEDRRYF-K----QQEIT 292 (301)
T ss_pred Eec--------cCCCcCCCe-eeeEEEeccc------CCCcchhhhcceeeeeeEEEEEEEchhhhhhh-h----heeEE
Confidence 333 333345666 7877777533 3777888 88899999999888 46664 2 45555
Q ss_pred EEE
Q 018667 177 VET 179 (352)
Q Consensus 177 V~~ 179 (352)
...
T Consensus 293 LwR 295 (301)
T KOG3063|consen 293 LWR 295 (301)
T ss_pred EEE
Confidence 544
No 28
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=32.61 E-value=1.1e+02 Score=28.62 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=51.4
Q ss_pred EeCCCceEEEEEEE--EeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEEEEeC-ccccCee--EeEEEEcCCCCCCC
Q 018667 226 CSLLDPITGELTVE--ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADG-DVCRNMT--LPIYVILPRLLTCP 300 (352)
Q Consensus 226 ~~~~d~i~G~i~~~--~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~eI~dG-~p~rg~~--IPi~~~lp~l~~~P 300 (352)
.-.++.+.|.+++. ...-.|..|+|+|.-.=....++...++.-++.|+.+-.- ...+|++ +||.+-||.- +|
T Consensus 44 ~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdDe~~~~~~t~~n~rl~~~fTIqpgEe~~fpf~l~lP~~--tP 121 (270)
T COG4326 44 LYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDDERGQQQGTLANWRLPYAFTIQPGEERNFPFELSLPWN--TP 121 (270)
T ss_pred ccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEeccccceeEEEEEEEeecceEEecCCceEeccEEEecCCC--Cc
Confidence 45688889999999 5678899999999754433334433344446777766544 4557776 8999999977 77
No 29
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=30.71 E-value=5.6e+02 Score=25.89 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=39.4
Q ss_pred ceeEeecCCCCCCcceeeeeeeeEEEEEeecCCceEEEEEEcCCCCCcCCCCcEE-EEEEEEeCCeEEEeEEEEEEEEEE
Q 018667 2 LISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQ-GKIVIKSSSSIFHYGIHLTVNGSA 80 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~Vs-G~V~i~~~k~~~h~gI~i~~~G~a 80 (352)
.+.|+|+..||...- .-.||.+=.+-+.- -.+|......++-.+||.|. |.+.|+..-..+-.--.+.+.|.+
T Consensus 168 ~i~v~Ek~~~p~~~~----~~~P~~lVA~kdGv--I~~i~v~~G~p~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V 241 (382)
T TIGR02876 168 VIKVVEKQEPKPVLK----KAEPRNIVAKKDGV--IKRVYVTSGEPVVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEV 241 (382)
T ss_pred EEEEEecCCCCCccc----cCCCccEEECCCCE--EEEEEEcCCeEEEccCCEEcCCCEEEEeEeCCCCceEEEccceEE
Confidence 478899987665332 33567665554441 12233444556777888773 777776211111112345666665
Q ss_pred E
Q 018667 81 N 81 (352)
Q Consensus 81 ~ 81 (352)
.
T Consensus 242 ~ 242 (382)
T TIGR02876 242 F 242 (382)
T ss_pred E
Confidence 3
No 30
>PRK10579 hypothetical protein; Provisional
Probab=25.44 E-value=3.7e+02 Score=21.90 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCe-----eeCCCc
Q 018667 47 RIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG-----RIGSGT 121 (352)
Q Consensus 47 ~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G-----~L~~G~ 121 (352)
++|++|-.+|=.|....+.+ +--||. +-|. ..++ -...+.+++++....+.=|| .+.+|.
T Consensus 5 NvYFdGkv~S~~~~~~dG~~-kTlGVm--~pGe--y~F~----------T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~ 69 (94)
T PRK10579 5 NEYFSGKVKSIGFDSSSTGR-ASVGVM--AEGE--YTFS----------TAEPEEMTVISGALNVLLPGATDWQVYEAGE 69 (94)
T ss_pred eeEECCeEEEEEEEcCCCCe-eEEEEE--eeeE--EEEc----------CCCcEEEEEEeeEEEEECCCCcccEEeCCCC
Confidence 47999988887777765444 223443 3455 1121 11223466677666554444 578888
Q ss_pred eEEeeEEEcCCC
Q 018667 122 TEVPFSMNLKQH 133 (352)
Q Consensus 122 ~~fpF~F~Lp~~ 133 (352)
+ |..|++
T Consensus 70 s-----F~Vpan 76 (94)
T PRK10579 70 V-----FNVPGH 76 (94)
T ss_pred E-----EEECCC
Confidence 7 888876
Done!