BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>018668
MGCFFRGLNDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNF
DMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFD
SFSDKWKNQKKKPSKPSKKESSSKGGDSNHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVA
KVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWR
EHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAV
TEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDSVSLQVAKSSSSADVFC

High Scoring Gene Products

Symbol, full name Information P value
AT4G25030 protein from Arabidopsis thaliana 1.1e-96
AT5G45410 protein from Arabidopsis thaliana 5.7e-86
GSU0639
Uncharacterized protein
protein from Geobacter sulfurreducens PCA 1.8e-05
GSU_0639
hypothetical protein
protein from Geobacter sulfurreducens PCA 1.8e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018668
        (352 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117293 - symbol:AT4G25030 "AT4G25030" species...   961  1.1e-96   1
TAIR|locus:2163563 - symbol:AT5G45410 "AT5G45410" species...   585  5.7e-86   2
UNIPROTKB|Q74FH0 - symbol:GSU0639 "Uncharacterized protei...   106  1.8e-05   1
TIGR_CMR|GSU_0639 - symbol:GSU_0639 "hypothetical protein...   106  1.8e-05   1


>TAIR|locus:2117293 [details] [associations]
            symbol:AT4G25030 "AT4G25030" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
            [GO:0007165 "signal transduction" evidence=RCA] [GO:0009414
            "response to water deprivation" evidence=RCA] [GO:0009611 "response
            to wounding" evidence=RCA] [GO:0009723 "response to ethylene
            stimulus" evidence=RCA] [GO:0009733 "response to auxin stimulus"
            evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
            pathway" evidence=RCA] [GO:0009753 "response to jasmonic acid
            stimulus" evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=RCA] [GO:0035556 "intracellular signal
            transduction" evidence=RCA] [GO:0042538 "hyperosmotic salinity
            response" evidence=RCA] [GO:0043069 "negative regulation of
            programmed cell death" evidence=RCA] EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161562 EMBL:AL035523 EMBL:AY085639
            EMBL:BT024736 EMBL:AK228468 EMBL:AK317301 IPI:IPI00530773
            PIR:T05524 RefSeq:NP_194233.1 RefSeq:NP_974613.1 UniGene:At.22641
            STRING:Q9SW23 EnsemblPlants:AT4G25030.1 EnsemblPlants:AT4G25030.2
            GeneID:828606 KEGG:ath:AT4G25030 TAIR:At4g25030 eggNOG:NOG312033
            HOGENOM:HOG000005975 InParanoid:Q9SW23 OMA:NNHEALS PhylomeDB:Q9SW23
            ProtClustDB:CLSN2915960 ArrayExpress:Q9SW23 Genevestigator:Q9SW23
            Uniprot:Q9SW23
        Length = 344

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 198/327 (60%), Positives = 225/327 (68%)

Query:    14 ASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGV 73
             ASQLNILRCPFLRNINEPTN SF+SSLPFP+P RA KGPIFEDGPNFD AFRLFHG DGV
Sbjct:    11 ASQLNILRCPFLRNINEPTNLSFSSSLPFPIPARAGKGPIFEDGPNFDTAFRLFHGQDGV 70

Query:    74 VPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLXXXXXXXXXXXXXXXXXXXXXXXXX 133
             VPLS+ +  R +  +P    P F+PLAAKAATISL                         
Sbjct:    71 VPLSDTA--RTEAQKP---VPVFHPLAAKAATISLSSFGSGGPFGFDAFSDMFKNQKKKS 125

Query:   134 XXXXXXXXXXXXXXXXHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKC 193
                             HEAM +EWL+TGNCPIAKSYRAVSGV PLVAK+ QPPPGMK+KC
Sbjct:   126 DSSKNKGGN-------HEAMGDEWLKTGNCPIAKSYRAVSGVAPLVAKILQPPPGMKFKC 178

Query:   194 PPXXXXXXXXXXXXXXXKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVA 253
             P                K+LRPQPLPAKVLVIGMLGMA NVPLG+WREHTEKFS SW +A
Sbjct:   179 PQAIVTARAAISKTPFAKNLRPQPLPAKVLVIGMLGMALNVPLGVWREHTEKFSASWFIA 238

Query:   254 VHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVG 313
             +HAAVPFI ++RKSVLMPK+AM FTIAASVLGQVIGSRAER R+K+V EK +TL+  +  
Sbjct:   239 LHAAVPFIGILRKSVLMPKTAMVFTIAASVLGQVIGSRAERRRLKSVAEKKLTLEVPNPS 298

Query:   314 S--ASQLQVVAVNG-GHCAEPA--KWD 335
             S  A Q+Q   V+  G C +    KW+
Sbjct:   299 SVEADQMQFAGVSSDGRCGDKVVMKWN 325


>TAIR|locus:2163563 [details] [associations]
            symbol:AT5G45410 "AT5G45410" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009863 "salicylic acid mediated signaling
            pathway" evidence=RCA] [GO:0009867 "jasmonic acid mediated
            signaling pathway" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA] EMBL:CP002688
            EMBL:AB018113 EMBL:BT002755 EMBL:AK317328 IPI:IPI00528181
            RefSeq:NP_001078717.1 RefSeq:NP_199354.3 RefSeq:NP_680396.1
            UniGene:At.22622 EnsemblPlants:AT5G45410.1
            EnsemblPlants:AT5G45410.2 EnsemblPlants:AT5G45410.3 GeneID:834577
            KEGG:ath:AT5G45410 TAIR:At5g45410 InParanoid:Q9FHJ5 OMA:GESAKST
            PhylomeDB:Q9FHJ5 ProtClustDB:CLSN2917856 Genevestigator:Q9FHJ5
            Uniprot:Q9FHJ5
        Length = 342

 Score = 585 (211.0 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 110/179 (61%), Positives = 132/179 (73%)

Query:   150 HEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPXXXXXXXXXXXXXX 209
             HEA+ +EWL+TGNCPIAKS+RA S V+PL++K    PPGMKY+CP               
Sbjct:   138 HEAVGDEWLKTGNCPIAKSFRAASKVMPLISKALTLPPGMKYRCPAPIVAARAALSKTAL 197

Query:   210 XKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVL 269
              KSLRPQPLP K+L I ++GMAANVPLG+WREHT+KFS +W +AVHAAVPFIAM+RKSVL
Sbjct:   198 VKSLRPQPLPEKMLAIALMGMAANVPLGVWREHTKKFSPAWFLAVHAAVPFIAMLRKSVL 257

Query:   270 MPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQLQVVAVNGGHC 328
             MPK+AMA TI AS+LGQVIGSRAERYR+KAV EK V +     G         ++GGHC
Sbjct:   258 MPKTAMALTIGASILGQVIGSRAERYRLKAVAEKMVPVTAMVSGYNQSPGDSGISGGHC 316

 Score = 294 (108.6 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 60/95 (63%), Positives = 69/95 (72%)

Query:    14 ASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGV 73
             A++  I +CPFLRNIN+PTN SF SSL FP+PV+  KGPIFEDGP FD AF+LFHG DG+
Sbjct:     8 AAESIIQKCPFLRNINKPTNLSF-SSLSFPIPVQGGKGPIFEDGPGFDSAFKLFHGKDGI 66

Query:    74 VPLSERSFVRPDVSEPELKAPQFNPLAAKAATISL 108
             VPLS   F      E   +A QFNPLA K ATISL
Sbjct:    67 VPLS--GFADDSEDEAGRRALQFNPLAGKVATISL 99


>UNIPROTKB|Q74FH0 [details] [associations]
            symbol:GSU0639 "Uncharacterized protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
            GenomeReviews:AE017180_GR RefSeq:NP_951696.1 GeneID:2685206
            KEGG:gsu:GSU0639 PATRIC:22024027 HOGENOM:HOG000276097 OMA:YVHISIP
            ProtClustDB:CLSK827967 BioCyc:GSUL243231:GH27-641-MONOMER
            Uniprot:Q74FH0
        Length = 85

 Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query:   227 MLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQ 286
             +  +  N+PLG  R+  EKF+  W   +H ++P I  +R         +  T+  +V GQ
Sbjct:    12 LTALLINIPLGYLRQGCEKFTFGWYFYIHISIPLIIYLRVKAGFSWKFIPLTLGGAVAGQ 71

Query:   287 VIGSRAERYR 296
             +IG    R R
Sbjct:    72 LIGGFIHRRR 81


>TIGR_CMR|GSU_0639 [details] [associations]
            symbol:GSU_0639 "hypothetical protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] EMBL:AE017180
            GenomeReviews:AE017180_GR RefSeq:NP_951696.1 GeneID:2685206
            KEGG:gsu:GSU0639 PATRIC:22024027 HOGENOM:HOG000276097 OMA:YVHISIP
            ProtClustDB:CLSK827967 BioCyc:GSUL243231:GH27-641-MONOMER
            Uniprot:Q74FH0
        Length = 85

 Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query:   227 MLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQ 286
             +  +  N+PLG  R+  EKF+  W   +H ++P I  +R         +  T+  +V GQ
Sbjct:    12 LTALLINIPLGYLRQGCEKFTFGWYFYIHISIPLIIYLRVKAGFSWKFIPLTLGGAVAGQ 71

Query:   287 VIGSRAERYR 296
             +IG    R R
Sbjct:    72 LIGGFIHRRR 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      352       283   0.00084  115 3  11 22  0.48    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  206 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.43u 0.13s 21.56t   Elapsed:  00:00:00
  Total cpu time:  21.43u 0.13s 21.56t   Elapsed:  00:00:00
  Start:  Thu May  9 20:20:29 2013   End:  Thu May  9 20:20:29 2013

Back to top