BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018668
         (352 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P98205|ALA2_ARATH Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2
            PE=1 SV=1
          Length = 1107

 Score = 36.6 bits (83), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 78   ERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSF 119
            E+      +++P+ ++P + PL + +   +  SFGPG PF F
Sbjct: 1046 EKDLSPISITQPKNRSPVYEPLLSDSPNATRRSFGPGTPFEF 1087


>sp|Q13136|LIPA1_HUMAN Liprin-alpha-1 OS=Homo sapiens GN=PPFIA1 PE=1 SV=1
          Length = 1202

 Score = 35.4 bits (80), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 133 PSKPSKKESSSKGGDSNHEAMSNEWLQTGNCPIAKSY 169
           PS P    ++   GD NHE + NEWL +   P  +SY
Sbjct: 947 PSAPPTSRTTLAYGDMNHEWIGNEWLPSLGLPQYRSY 983


>sp|Q3AMQ3|RPOA_SYNSC DNA-directed RNA polymerase subunit alpha OS=Synechococcus sp.
           (strain CC9605) GN=rpoA PE=3 SV=1
          Length = 312

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 266 KSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQL 318
            +V MP + + FTI  + + +  GS  ER RM+ VT+ S+T  E    SA+QL
Sbjct: 167 DAVFMPVTRVNFTIDETAVAEG-GSARERLRMEIVTDGSITPDEALAQSANQL 218


>sp|Q0AM30|ARLY_MARMM Argininosuccinate lyase OS=Maricaulis maris (strain MCS10) GN=argH
           PE=3 SV=1
          Length = 472

 Score = 33.1 bits (74), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 74  VPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSDKWKNQ 129
           VPL+E S       EP +    F+ L+A+A+ +S +SFG   P         WK++
Sbjct: 414 VPLAELSLAEMQSVEPAIDETVFSVLSARASMMSRTSFGGTSPIRVREQVAIWKDR 469


>sp|Q9C1M7|DYHC_ASHGO Dynein heavy chain, cytoplasmic OS=Ashbya gossypii (strain ATCC 10895
            / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DYN1 PE=3 SV=1
          Length = 4083

 Score = 32.0 bits (71), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 237  GIWREHTEKFSVSWIVAVHAAVP--FIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAER 294
            G+W       SV W      AV     A+M+K   MP   + + I  ++ G +  +    
Sbjct: 1228 GLWNSFNATLSVKWADFESTAVKHRLEALMKKCQDMPPKVLQYKIFQNIAGSIEATLKSM 1287

Query: 295  YRMKAVTEKSVTLKEKSV 312
            + +KA+ E ++  +  S+
Sbjct: 1288 HLLKALKEPAIKPRHWSI 1305


>sp|B0RIG4|ACKA_CLAMS Acetate kinase OS=Clavibacter michiganensis subsp. sepedonicus
           (strain ATCC 33113 / JCM 9667) GN=ackA PE=3 SV=1
          Length = 396

 Score = 31.6 bits (70), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 48  AAKGPIFEDGPNFDMAFRLFHGNDGVV-PLSERSFVRPDVSEPELKAPQFNPLAAKAATI 106
           A  GP  E+GP   +  R+ HG D  V P      V+ D+ +    AP  NP A +    
Sbjct: 72  ADHGPSLEEGPPVAIGHRVVHGGDVFVEPTVVTEKVKADIDDLSALAPLHNPGALQGIQA 131

Query: 107 SLSSF 111
           + ++F
Sbjct: 132 AQTAF 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,040,559
Number of Sequences: 539616
Number of extensions: 5360125
Number of successful extensions: 15859
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 15852
Number of HSP's gapped (non-prelim): 26
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)