Query 018668
Match_columns 352
No_of_seqs 64 out of 66
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 04:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvj_C Sulfurtransferase TUSA; 36.3 19 0.00065 26.9 2.3 19 189-207 16-34 (82)
2 1pav_A Hypothetical protein TA 34.7 14 0.00047 27.1 1.2 19 189-207 12-30 (78)
3 1jdq_A TM006 protein, hypothet 33.5 22 0.00075 27.9 2.3 19 189-207 32-50 (98)
4 3hz7_A Uncharacterized protein 31.2 26 0.00087 26.9 2.3 18 190-207 8-25 (87)
5 2pco_A Latarcin-1, LTC-1; cont 24.9 8.8 0.0003 25.2 -1.1 11 236-246 4-14 (26)
6 1je3_A EC005, hypothetical 8.6 19.9 21 0.00073 28.1 -0.1 18 190-207 34-51 (97)
7 1h7d_A Aminolevulinic acid syn 12.7 57 0.002 23.9 0.6 10 19-28 8-17 (49)
8 3tij_A NUPC family protein; me 8.5 4.8E+02 0.016 25.9 5.6 55 225-292 277-334 (424)
9 1ssk_A Nucleocapsid protein; s 8.3 39 0.0013 29.9 -1.9 12 236-247 62-73 (158)
10 3u88_M Histone-lysine N-methyl 7.9 1.1E+02 0.0038 24.0 0.7 14 53-66 27-40 (75)
No 1
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=36.30 E-value=19 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.3
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
.-+.||.+++.++.||..-
T Consensus 16 rGl~CP~Pvl~~kkal~~l 34 (82)
T 3lvj_C 16 LGLRCPEPVMMVRKTVRNM 34 (82)
T ss_dssp TTCCTTHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999864
No 2
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=34.69 E-value=14 Score=27.06 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.4
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
.-+.||.+++.++.||..-
T Consensus 12 rGl~CP~Pvl~~k~al~~l 30 (78)
T 1pav_A 12 RGSYCPGPLMELIKAYKQA 30 (78)
T ss_dssp SSCSSCTTHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHcC
Confidence 4579999999999999864
No 3
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=33.53 E-value=22 Score=27.91 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.4
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
.-+.||.+|+.++.||...
T Consensus 32 rGl~CP~Pvl~tkkaL~~l 50 (98)
T 1jdq_A 32 RGEVCPVPDVETKRALQNM 50 (98)
T ss_dssp SSCCSSHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 4579999999999999874
No 4
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=31.19 E-value=26 Score=26.86 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.9
Q ss_pred cccCcHHHHHHHHHHHhh
Q 018668 190 KYKCPPVVVAARAAIART 207 (352)
Q Consensus 190 k~~CP~aiVaaRAAlart 207 (352)
-+.||-+|+.++.||..-
T Consensus 8 Gl~CP~Pvl~~kkal~~l 25 (87)
T 3hz7_A 8 GQVCPIPVIRAKKALAEL 25 (87)
T ss_dssp TCCTTHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 478999999999999864
No 5
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=24.86 E-value=8.8 Score=25.24 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=10.2
Q ss_pred chhhhcccccc
Q 018668 236 LGIWREHTEKF 246 (352)
Q Consensus 236 fGyWRe~tkKF 246 (352)
||.|||..+||
T Consensus 4 fgk~keklKkf 14 (26)
T 2pco_A 4 SGMWRRKLKKL 14 (26)
T ss_dssp CSCSHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999999998
No 6
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=19.87 E-value=21 Score=28.08 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.7
Q ss_pred cccCcHHHHHHHHHHHhh
Q 018668 190 KYKCPPVVVAARAAIART 207 (352)
Q Consensus 190 k~~CP~aiVaaRAAlart 207 (352)
-+.||.+|+.++.||..-
T Consensus 34 Gl~CP~PvlktkkaL~~l 51 (97)
T 1je3_A 34 GEPCPYPAVATLEAMPQL 51 (97)
T ss_dssp CCSSSSSTHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999999864
No 7
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=12.75 E-value=57 Score=23.85 Aligned_cols=10 Identities=30% Similarity=0.653 Sum_probs=7.1
Q ss_pred cccCcccccC
Q 018668 19 ILRCPFLRNI 28 (352)
Q Consensus 19 i~rCPFLrNI 28 (352)
+.+||||...
T Consensus 8 l~~CPFL~R~ 17 (49)
T 1h7d_A 8 LRSCPVLSQG 17 (49)
T ss_dssp CCSCCCCSSC
T ss_pred hccCCchhcC
Confidence 4589998643
No 8
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=8.49 E-value=4.8e+02 Score=25.90 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=35.5
Q ss_pred HHHHHHHhhccchhhhc--cccccchhHHH-HhhhhhhHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhHH
Q 018668 225 IGMLGMAANVPLGIWRE--HTEKFSVSWIV-AVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRA 292 (352)
Q Consensus 225 I~~la~llNIPfGyWRe--~tkKFS~~WFl-AVHapVPfIa~LRi~~glpw~~Ip~tIaAailGQ~IGgRl 292 (352)
|+++++ +|-=||++=+ ++...|+|+.+ ||-.|+=+ ..|+||.= +..+||++|-|+
T Consensus 277 vALiAl-iN~~l~~ig~~~g~~~lSlq~IlGyif~P~A~------lmGVpw~d------~~~vg~liG~Kl 334 (424)
T 3tij_A 277 IGLIAL-INGMLGGIGGWFGMPELKLEMLLGWLFAPLAF------LIGVPWNE------ATVAGEFIGLKT 334 (424)
T ss_dssp HHHHHH-HHHHHHHHHGGGTCTTCCHHHHHHHHHHHHHH------HTTCCGGG------HHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhhhhcCCCCccHHHHHHHHhHHHHH------HhCCCHHH------HHHHHHHHHHHH
Confidence 334444 7888888754 35678999877 44444433 36899974 345677777665
No 9
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus} SCOP: b.148.1.1
Probab=8.29 E-value=39 Score=29.93 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.3
Q ss_pred chhhhccccccc
Q 018668 236 LGIWREHTEKFS 247 (352)
Q Consensus 236 fGyWRe~tkKFS 247 (352)
-|||++..|++-
T Consensus 62 ~GYW~rq~Rr~~ 73 (158)
T 1ssk_A 62 IGYYRRATRRVR 73 (158)
T ss_dssp EEEEEEECCCCC
T ss_pred cchhhhhheecc
Confidence 478888777663
No 10
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=7.86 E-value=1.1e+02 Score=24.03 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=10.4
Q ss_pred cccCCCCcchhhhh
Q 018668 53 IFEDGPNFDMAFRL 66 (352)
Q Consensus 53 ifeDGp~Fd~af~l 66 (352)
++--|||||.|..+
T Consensus 27 llgvgpGFDAALqv 40 (75)
T 3u88_M 27 LLRVGPGFDAALQV 40 (75)
T ss_dssp CCEECCCCCHHHHH
T ss_pred HHccCcChhHHHHH
Confidence 34679999998654
Done!