Query 018668
Match_columns 352
No_of_seqs 64 out of 66
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 04:13:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018668.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018668hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dhwa1 f.58.1.1 (A:6-208) D-m 34.4 87 0.0063 23.5 8.8 75 226-300 19-110 (203)
2 d1dcja_ d.68.3.3 (A:) SirA {Es 28.3 15 0.0011 25.5 2.3 19 189-207 15-33 (81)
3 d1pava_ d.68.3.3 (A:) Hypothet 22.8 13 0.00093 25.8 1.0 20 189-208 12-31 (78)
4 d1jdqa_ d.68.3.3 (A:) Hypothet 17.2 33 0.0024 25.0 2.3 19 189-207 32-50 (98)
5 d1ox0a2 c.95.1.1 (A:252-409) B 11.8 32 0.0023 26.4 0.9 15 101-115 133-147 (158)
6 d1sska_ b.148.1.1 (A:) Nucleoc 11.5 12 0.00084 31.2 -1.9 20 236-255 62-91 (158)
7 d1sroa_ b.40.4.5 (A:) S1 RNA-b 9.9 57 0.0042 22.1 1.6 27 60-86 19-45 (76)
8 d1je3a_ d.68.3.3 (A:) hypothet 9.6 29 0.0021 25.3 -0.1 19 189-207 33-51 (97)
9 d2b78a2 c.66.1.51 (A:69-385) H 8.6 26 0.0019 30.0 -0.9 13 60-72 25-38 (317)
10 d2gfva2 c.95.1.1 (A:252-412) B 8.5 70 0.0051 24.2 1.8 8 108-115 144-151 (161)
No 1
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=34.36 E-value=87 Score=23.50 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=43.5
Q ss_pred HHHHHHhhccchhhhccccccc----------hhHHHHhhhhhhHHHH-------HHHhcCCChhHHHHHHHHHHHHHHh
Q 018668 226 GMLGMAANVPLGIWREHTEKFS----------VSWIVAVHAAVPFIAM-------MRKSVLMPKSAMAFTIAASVLGQVI 288 (352)
Q Consensus 226 ~~la~llNIPfGyWRe~tkKFS----------~~WFlAVHapVPfIa~-------LRi~~glpw~~Ip~tIaAailGQ~I 288 (352)
.++++++-+|+|++....++-. +..+..+=.++|.++. .+...+.+.+..+..++-.+.....
T Consensus 19 ~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~ 98 (203)
T d3dhwa1 19 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPF 98 (203)
T ss_dssp HHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccHHHHHHHHHHHhhHH
Confidence 3688899999999876543221 2233333335554443 3445555555656666666666666
Q ss_pred hhHHHHHHHHHh
Q 018668 289 GSRAERYRMKAV 300 (352)
Q Consensus 289 GgRl~R~r~k~~ 300 (352)
-.|.-+...+++
T Consensus 99 ~~~~~~~~l~~i 110 (203)
T d3dhwa1 99 IARMVENALLEI 110 (203)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 666666666554
No 2
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
Probab=28.26 E-value=15 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.3
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
.-++||-+++.++.||..-
T Consensus 15 ~G~~CP~P~l~~k~al~~~ 33 (81)
T d1dcja_ 15 LGLRCPEPVMMVRKTVRNM 33 (81)
T ss_dssp TTCCTTHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999764
No 3
>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=22.79 E-value=13 Score=25.76 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.9
Q ss_pred CcccCcHHHHHHHHHHHhhh
Q 018668 189 MKYKCPPVVVAARAAIARTA 208 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart~ 208 (352)
.-+.||-+++.++.||....
T Consensus 12 ~G~~CP~Pvl~~k~~l~~l~ 31 (78)
T d1pava_ 12 RGSYCPGPLMELIKAYKQAK 31 (78)
T ss_dssp SSCSSCTTHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHhCC
Confidence 45799999999999998653
No 4
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}
Probab=17.21 E-value=33 Score=24.96 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.2
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
..++||-+++.++.||...
T Consensus 32 rG~~CP~Pll~~kkal~~l 50 (98)
T d1jdqa_ 32 RGEVCPVPDVETKRALQNM 50 (98)
T ss_dssp SSCCSSHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHHHHHcC
Confidence 5679999999999999653
No 5
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]}
Probab=11.75 E-value=32 Score=26.38 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=9.8
Q ss_pred cccceeeccccCCCC
Q 018668 101 AKAATISLSSFGPGG 115 (352)
Q Consensus 101 a~aatislS~fg~gg 115 (352)
...-..-.+|||.||
T Consensus 133 ~~~~~a~~nsfGfGG 147 (158)
T d1ox0a2 133 KEIPYAISNTFGFGG 147 (158)
T ss_dssp CCCSEEEEEEEETTT
T ss_pred CCCCEEEEeCcCCCc
Confidence 333445568899887
No 6
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus, (SARS-CoV) [TaxId: 227859]}
Probab=11.55 E-value=12 Score=31.15 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=14.3
Q ss_pred chhhhccccccch----------hHHHHhh
Q 018668 236 LGIWREHTEKFSV----------SWIVAVH 255 (352)
Q Consensus 236 fGyWRe~tkKFS~----------~WFlAVH 255 (352)
-|||+++.|+|-. -|+||-.
T Consensus 62 ~GYW~rq~Rr~r~gkG~rk~l~p~WyFYY~ 91 (158)
T d1sska_ 62 IGYYRRATRRVRGGDGKMKELSPRWYFYYL 91 (158)
T ss_dssp EEEEEEECCCCCCTTTCCCCCCCEEEEEEE
T ss_pred hhhHHhhhhhccCCCCceeeCCCceEEEEe
Confidence 5999988866643 4888743
No 7
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=57 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=19.9
Q ss_pred cchhhhhhccCCCeeeCCCCCCCCCCC
Q 018668 60 FDMAFRLFHGNDGVVPLSERSFVRPDV 86 (352)
Q Consensus 60 Fd~af~lFHG~dGvvPLs~~s~~~~~~ 86 (352)
|..-..|..|.+|.||+|+-|..+.++
T Consensus 19 ~G~fV~l~~~~~Glv~~sels~~~~~~ 45 (76)
T d1sroa_ 19 FGAFVAIGGGKEGLVHISQIADKRVEK 45 (76)
T ss_dssp TEEEEECSSSCCCBCCTTSSCSSCCSC
T ss_pred cEEEEEeCCCCEEEEEhHHhCccccCC
Confidence 333345667999999999999876553
No 8
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}
Probab=9.65 E-value=29 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.7
Q ss_pred CcccCcHHHHHHHHHHHhh
Q 018668 189 MKYKCPPVVVAARAAIART 207 (352)
Q Consensus 189 ~k~~CP~aiVaaRAAlart 207 (352)
.-++||-+++.++.+|...
T Consensus 33 ~G~~CP~Pll~~k~~l~~l 51 (97)
T d1je3a_ 33 VGEPCPYPAVATLEAMPQL 51 (97)
T ss_dssp BCCSSSSSTHHHHHHTTTC
T ss_pred CCCcCCHHHHHHHHHHHcC
Confidence 4578999999999998643
No 9
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=8.62 E-value=26 Score=29.97 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=10.6
Q ss_pred cchhhhhhccC-CC
Q 018668 60 FDMAFRLFHGN-DG 72 (352)
Q Consensus 60 Fd~af~lFHG~-dG 72 (352)
..+|||||||. ||
T Consensus 25 ~t~~yRlv~ge~Dg 38 (317)
T d2b78a2 25 LTTAYRLFNQDGDS 38 (317)
T ss_dssp SCCEEEEEEGGGGT
T ss_pred CCCEEEEEEecCCC
Confidence 35799999998 66
No 10
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]}
Probab=8.47 E-value=70 Score=24.20 Aligned_cols=8 Identities=63% Similarity=1.024 Sum_probs=6.2
Q ss_pred ccccCCCC
Q 018668 108 LSSFGPGG 115 (352)
Q Consensus 108 lS~fg~gg 115 (352)
.+|||.||
T Consensus 144 vnsfGfgG 151 (161)
T d2gfva2 144 CNSFGFGG 151 (161)
T ss_dssp EEEEEGGG
T ss_pred EeCcCccc
Confidence 47898876
Done!