BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018671
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 195/361 (54%), Gaps = 33/361 (9%)
Query: 12 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 71
L EP + I YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR NL ++
Sbjct: 148 LHQAEPAE--IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKAN 205
Query: 72 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 131
+ + E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I
Sbjct: 206 LLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI 265
Query: 132 -LSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLV 181
L+ F+ +L YA + L + +++ +R V V+ ++L+ E +PYG L+
Sbjct: 266 VLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLI 325
Query: 182 WSTGVGPSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 237
W+TG ++ L +P+ + G ++++L+V ++FA+GD + L
Sbjct: 326 WATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGL 378
Query: 238 PALAQVAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMAT 288
P AQVA ++ +YL +++ + + N S KD E + PF Y LG++A
Sbjct: 379 PPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAY 438
Query: 289 IGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRD 348
+G +A+ +R K + + G +++ +WR YL+ ++S R+R V +W F RD
Sbjct: 439 LGSERAIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497
Query: 349 I 349
Sbjct: 498 F 498
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 195/361 (54%), Gaps = 33/361 (9%)
Query: 12 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 71
L EP + I YD L+ A+GAE +TFGI GV + FL+E+ ++ EIRR NL ++
Sbjct: 117 LHQAEPAE--IKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKAN 174
Query: 72 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 131
+ + E+ RLL VVVGGGPTGVE +GEL D++ +D+R+ + + + + L+EA I
Sbjct: 175 LLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI 234
Query: 132 -LSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTE--------VPYGLLV 181
L+ F+ +L YA + L + +++ +R V V+ ++L+ E +PYG L+
Sbjct: 235 VLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLI 294
Query: 182 WSTGVGPSTLVKSL--DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 237
W+TG ++ L +P+ + G ++++L+V ++FA+GD + L
Sbjct: 295 WATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAF-------AGL 347
Query: 238 PALAQVAERQGKYLFSLLNRIGKAGGGRAN--SAKD-----MELGD--PFVYRHLGSMAT 288
P AQVA ++ +YL +++ + + N S KD E + PF Y LG++A
Sbjct: 348 PPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAY 407
Query: 289 IGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRD 348
+G +A+ +R K + + G +++ +WR YL+ ++S R+R V +W F RD
Sbjct: 408 LGSERAIATIRSGKRT-FYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 466
Query: 349 I 349
Sbjct: 467 F 467
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 43/253 (16%)
Query: 10 DELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 68
+ LRT E K YDKLV+ALG++A+ + G+ T + + A+ ++
Sbjct: 102 ENLRTGERRTLK--YDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQH------- 152
Query: 69 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE- 127
IS E S+ V+VGGG G+E + L+D I T++E
Sbjct: 153 -----AISAGEVSK---AVIVGGGFIGLEMAVSLADMW-------------GIDTTVVEL 191
Query: 128 ANEILSSFDDR-----LRH--YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLL 180
A++I+ F + LRH + +G ++VR + + ++ D + L+
Sbjct: 192 ADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVR-LEGENGKVARVITDKRTLDADLV 250
Query: 181 VWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE-STGKTVLP 238
+ + GV P+T L + L P G I +D +R S D+FA GDC TGK
Sbjct: 251 ILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFF 309
Query: 239 ALAQVAERQGKYL 251
L +A RQG+ +
Sbjct: 310 PLGSMANRQGRVI 322
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 51/223 (22%)
Query: 22 ISYDKLVIALGAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISE 77
+ YD+LV+A G G G N +LR + A+ IRR+L+ +
Sbjct: 101 LDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD----------- 149
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL---- 132
+RL VV+GGG G+E + + +K +HVTL++ A +L
Sbjct: 150 ---NRL---VVIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVT 189
Query: 133 ----SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTG 185
S+F + L A + ++G + V G D QK ++ DGT +P L++ G
Sbjct: 190 APPVSAFYEHLHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 247
Query: 186 VGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 228
+ P+ + S + G I I+E ++ S + AVGDC+ +
Sbjct: 248 LIPNCELASAAGLQVDNG-IVINEHMQT-SDPLIMAVGDCARF 288
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 51/223 (22%)
Query: 22 ISYDKLVIALGAEASTF----GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISE 77
+ YD+LV+A G G G N +LR + A+ IRR+L+ +
Sbjct: 100 LDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIAD----------- 148
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEIL---- 132
+RL VV+GGG G+E + + +K +HVTL++ A +L
Sbjct: 149 ---NRL---VVIGGGYIGLEVAA--------------TAIKANMHVTLLDTAARVLERVT 188
Query: 133 ----SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQK---LILNDGTEVPYGLLVWSTG 185
S+F + L A + ++G + V G D QK ++ DGT +P L++ G
Sbjct: 189 APPVSAFYEHLHREAGVDI-RTGTQ-VCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 246
Query: 186 VGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 228
+ P+ + S + G I I+E ++ S + AVGDC+ +
Sbjct: 247 LIPNCELASAAGLQVDNG-IVINEHMQT-SDPLIMAVGDCARF 287
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 77 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 136
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 137 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 190
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 191 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 224
LD + G + +D + + SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 42/247 (17%)
Query: 20 FKISYDKLVIALGAEASTFGIHGVKE-NATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+ +YD L+++ GA+ I G++E A F LR V I+ + +
Sbjct: 137 YNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYI-------------D 183
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFD 136
E+K R H V+GGG GVE + ++R+R I VTL+E AN++ D
Sbjct: 184 EKKPR--HATVIGGGFIGVEX--------VENLRER------GIEVTLVEXANQVXPPID 227
Query: 137 DRLRHYATTQLSKSGVRLV--RGIVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGP-STLV 192
Y V LV G+ ++ ++ L G+ + L+ + GV P S+L
Sbjct: 228 YEXAAYVHEHXKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDXLILAIGVQPESSLA 287
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC---SGYLESTGKTVLPALAQVAERQGK 249
K L G I ++E + S ++A+GD ++ T +T +P LA A RQG+
Sbjct: 288 KGAGLALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTET-ETXIP-LAWPANRQGR 344
Query: 250 YLFSLLN 256
L +++
Sbjct: 345 XLADIIH 351
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 77 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 136
E+ R+L VGGG VEF+G + Y Y+ + + IL FD
Sbjct: 205 EDAPKRML---CVGGGYIAVEFAG---------IFNGYKPCGGYVDLCY-RGDLILRGFD 251
Query: 137 DRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPST 190
+R T QL +G+R+ I K+ D S + NDGTE Y ++ + G P +
Sbjct: 252 TEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRS 311
Query: 191 LVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGD 224
LD + G + +D + + SV +++A+GD
Sbjct: 312 QALQLDKAGVRTGKNGAVQVDAYSKT-SVDNIYAIGD 347
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 23 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82
+YDKL++ G++ + I G+ + +L + ++ +KL EE +
Sbjct: 105 AYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDA---KKLF-------------EEAPK 148
Query: 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLR 140
++G G G E + S+ Q Y +V LI+ +E + FD
Sbjct: 149 AKTITIIGSGYIGAELAEAYSN-------QNY-------NVNLIDGHERVLYKYFDKEFT 194
Query: 141 HYATTQLSKSGVRLVRG----IVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPSTLVKSL 195
GV LV G ++VD + + DG E+ + + G P+T +
Sbjct: 195 DILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKG 254
Query: 196 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG--YLESTGKTVLPALAQVAERQGK 249
+ G I DE++ S +D+FA GD + Y + +P LA A RQG+
Sbjct: 255 KVAMLDNGAIITDEYMH-SSNRDIFAAGDSAAVHYNPTNSNAYIP-LATNAVRQGR 308
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 38/185 (20%)
Query: 65 LNLMLSDVPGI----SEEEKSRLL--------HCVVVGGGPTGVEFSGELSDFIMRDVRQ 112
L+ + +D+ G+ ++E+ RL+ + VV+GGG G+E + L+ F
Sbjct: 122 LSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKF------- 174
Query: 113 RYSHVKDYIHVTLIEA-NEILSSF-DDRLRHYATTQLSKSGVRLVRGIVKDV---DSQKL 167
++VTL+EA +L+ + L + + GV L G D D K+
Sbjct: 175 -------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 168 I---LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVG 223
+ DG+ +P +++ G+ P V +L + GG + +DE+ R S+ DV+A+G
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPC--VGALISAGASGGNGVDVDEFCRT-SLTDVYAIG 284
Query: 224 DCSGY 228
DC+ +
Sbjct: 285 DCAAH 289
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 161 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 191
D + + L DG+ + YG L+W+TG P L
Sbjct: 92 DPAAHTVKLGDGSAIEYGKLIWATGGDPRRL 122
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 69 LSDVPGISE-----------EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 117
+ ++PGI E R+L VGGG VEF+G + + +D +
Sbjct: 166 MPNIPGIEHCISSNEAFYLPEPPRRVL---TVGGGFISVEFAGIFNAYKPKDGQ------ 216
Query: 118 KDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVR-----GIVKDVD-SQKLILN 170
VTL E IL FD LR T QL+ +G++++ + + D S+ +
Sbjct: 217 -----VTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 171 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKS----PGGRIGIDEWLRVPSVQDVFAVGDCS 226
G ++ + L++ + G P T K L L + G + +DE+ R +V +++A+GD +
Sbjct: 272 SGKKMDFDLVMMAIGRSPRT--KDLQLQNAGVMIKNGGVQVDEYSRT-NVSNIYAIGDVT 328
Query: 227 GYLESTGKTVLPALAQV 243
+ T + A A V
Sbjct: 329 NRVMLTPVAINEAAALV 345
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 69 LSDVPGISE-----------EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 117
+ ++PGI E R+L VGGG VEF+G + + +D +
Sbjct: 167 MPNIPGIEHCISSNEAFYLPEPPRRVL---TVGGGFISVEFAGIFNAYKPKDGQ------ 217
Query: 118 KDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVR-----GIVKDVD-SQKLILN 170
VTL E IL FD LR T QL+ +G++++ + + D S+ +
Sbjct: 218 -----VTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 272
Query: 171 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKS----PGGRIGIDEWLRVPSVQDVFAVGDCS 226
G ++ + L++ + G P T K L L + G + +DE+ R +V +++A+GD +
Sbjct: 273 SGKKMDFDLVMMAIGRSPRT--KDLQLQNAGVMIKNGGVQVDEYSRT-NVSNIYAIGDVT 329
Query: 227 GYLESTGKTVLPALAQV 243
+ T + A A V
Sbjct: 330 NRVMLTPVAINEAAALV 346
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 69 LSDVPGISE-----------EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 117
+ ++PGI E R+L VGGG VEF+G + + +D +
Sbjct: 165 MPNIPGIEHCISSNEAFYLPEPPRRVL---TVGGGFISVEFAGIFNAYKPKDGQ------ 215
Query: 118 KDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVR-----GIVKDVD-SQKLILN 170
VTL E IL FD LR T QL+ +G++++ + + D S+ +
Sbjct: 216 -----VTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 270
Query: 171 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKS----PGGRIGIDEWLRVPSVQDVFAVGDCS 226
G ++ + L++ + G P T K L L + G + +DE+ R +V +++A+GD +
Sbjct: 271 SGKKMDFDLVMMAIGRSPRT--KDLQLQNAGVMIKNGGVQVDEYSRT-NVSNIYAIGDVT 327
Query: 227 GYLESTGKTVLPALAQV 243
+ T + A A V
Sbjct: 328 NRVMLTPVAINEAAALV 344
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 69 LSDVPGISE-----------EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 117
+ ++PGI E R+L VGGG VEF+G + + +D +
Sbjct: 166 MPNIPGIEHCISSNEAFYLPEPPRRVL---TVGGGFISVEFAGIFNAYKPKDGQ------ 216
Query: 118 KDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVR-----GIVKDVD-SQKLILN 170
VTL E IL FD LR T QL+ +G++++ + + D S+ +
Sbjct: 217 -----VTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE 271
Query: 171 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKS----PGGRIGIDEWLRVPSVQDVFAVGDCS 226
G ++ + L++ + G P T K L L + G + +DE+ R +V +++A+GD +
Sbjct: 272 SGKKMDFDLVMMAIGRSPRT--KDLQLQNAGVMIKNGGVQVDEYSRT-NVSNIYAIGDVT 328
Query: 227 GYLESTGKTVLPALAQV 243
+ T + A A V
Sbjct: 329 NRVMLTPVAINEAAALV 345
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 58/265 (21%)
Query: 13 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSD 71
R L+ +++ SYD L+++ GA I GV T LR + I + + +N
Sbjct: 95 RLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN----- 149
Query: 72 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 130
+ H VVGGG FI ++ + H+ I TL+E A++
Sbjct: 150 ----------NVEHATVVGGG------------FIGLEMMESLHHLG--IKTTLLELADQ 185
Query: 131 ILSSFDDRLRHYATTQLSKSGVRLVRGIV------------------KDVDSQ------K 166
+++ D + +A + GV L G +D Q
Sbjct: 186 VMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS 245
Query: 167 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 225
L L++G + LL+ + GV P T L + L G I ++ ++ S ++AVGD
Sbjct: 246 LTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDA 304
Query: 226 SGYLE-STGKTVLPALAQVAERQGK 249
+ TG+ L LA A RQG+
Sbjct: 305 VEEQDFVTGQACLVPLAGPANRQGR 329
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 21 KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 80
KI YD LVIA G + FG G +EN+T + HA E ++KL L PG
Sbjct: 95 KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQKKL---QELYANPG------ 144
Query: 81 SRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEILSSFD--- 136
VV+G P GV G +F +M + ++ + +T I + L F
Sbjct: 145 -----PVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGG 198
Query: 137 -DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI---LNDGT-EVPYGLLVWSTGV-GPS 189
+ ++ + + + VK ++ K+I LN T EVP ++ GP
Sbjct: 199 IGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPE 258
Query: 190 TLVKSLDLPKSPGGRIGI-DEWLRVPSVQDVFAVGDCSGYLESTGKTVLP 238
+ + D +P ++ I + + P+ +++F VG + + KT +P
Sbjct: 259 VVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA-IPPIEKTPIP 307
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 21 KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 80
KI YD LVIA G + FG G +EN+T + HA E ++KL L PG
Sbjct: 95 KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQKKL---QELYANPG------ 144
Query: 81 SRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEILSSFD--- 136
VV+G P GV G +F +M + ++ + +T I + L F
Sbjct: 145 -----PVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGG 198
Query: 137 -DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI---LNDGT-EVPYGLLVWSTGV-GPS 189
+ ++ + + + VK ++ K+I LN T EVP ++ GP
Sbjct: 199 IGASKRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPE 258
Query: 190 TLVKSLDLPKSPGGRIGI-DEWLRVPSVQDVFAVGDCSGYLESTGKTVLP 238
+ + D +P ++ I + + P+ +++F VG + + KT +P
Sbjct: 259 VVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA-IPPIEKTPIP 307
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 50/239 (20%)
Query: 23 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82
SYDKL++A GA + I G +++ + L+ L+ VP + +
Sbjct: 103 SYDKLILATGASQFSTQIRG-----------SQTEKLLKYKFLSGALAAVPLLENSQT-- 149
Query: 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 142
V+G GP G E DF+++ K +HV N + FD
Sbjct: 150 ---VAVIGAGPIGX----EAIDFLVK--------XKKTVHVFESLENLLPKYFDKEXVAE 194
Query: 143 ATTQLSKSGV------------RLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 190
L K V GIV + Q++ + G +++ + P
Sbjct: 195 VQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSG--------IFALNLHPQL 246
Query: 191 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVAERQG 248
+ ++ I +D +L+ SV +VFA+GDC S E +T L A R G
Sbjct: 247 AYLDKKIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVXNEPVAETFYAPLVNNAVRTG 304
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF 308
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 23 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 81
+YDKL+I+ GA I G +N +R A ++++K +
Sbjct: 103 NYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV---------------DP 147
Query: 82 RLLHCVVVGGGPTGVE----FSGELSDFIMRDVRQRYSHV---KDYIHVTL--IEANEIL 132
+ + VV+G G G+E F+ + D+ R V K++ V +EAN I
Sbjct: 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNIT 207
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ + + Y G V+ +V D ++ L+V + GV P+T
Sbjct: 208 IATGETVERY-------EGDGRVQKVVTDKNAYDA----------DLVVVAVGVRPNTAW 250
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVAERQGKY 250
L P G I DE++R S DVFAVGD + + T V ALA A +QG++
Sbjct: 251 LKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRF 308
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 73 PGISEEE----KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128
P IS E K+ H VVVGGG G+E ++ K V+++EA
Sbjct: 157 PVISSTEALAPKALPQHLVVVGGGYIGLELG--------------IAYRKLGAQVSVVEA 202
Query: 129 NE-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGL----LVW 182
E IL ++D L L K G+ L G V+ ++ L+ NDG L ++
Sbjct: 203 RERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLV 262
Query: 183 STGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA 239
+ G P T ++ LDL K G I IDE + S+ +V+A+GD +G P
Sbjct: 263 AVGRRPRTKGFNLECLDL-KMNGAAIAIDERCQT-SMHNVWAIGDVAGE---------PM 311
Query: 240 LAQVAERQGKYLFSLLNRIGKA 261
LA A QG+ + ++ GKA
Sbjct: 312 LAHRAMAQGEMVAEIIA--GKA 331
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 122 HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND-GTEVPYGLL 180
HV LI + D+ L + L ++GV+ ++S+ L N+ G G +
Sbjct: 168 HVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF------LNSELLEANEEGVLTNSGFI 221
Query: 181 VWSTGVGPSTLVKSLDLPKSPG---GR-IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 236
+ +V ++DL + G GR I ID+ R S +DV+A+GDC+ Y +
Sbjct: 222 EGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEY-----SGI 275
Query: 237 LPALAQVAERQGKYLFSLL 255
+ A+ A Q + L +L
Sbjct: 276 IAGTAKAAMEQARVLADIL 294
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 34/117 (29%)
Query: 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 145
V+VG GP G E + +LS Q Y VT+I+ + L HY
Sbjct: 11 VVIVGNGPGGFELAKQLS--------QTY-------EVTVIDKEPVPYYSKPMLSHYIAG 55
Query: 146 QLSKSGVRLV---------RGI-------VKDVD-SQKLILNDGTEVPYGLLVWSTG 185
+ ++ RL RGI K +D +K+++ + EVPY LV +TG
Sbjct: 56 FIPRN--RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATG 110
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 45/218 (20%)
Query: 20 FKISYDKLVIALGA-----EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPG 74
F+ SYD+L+IA G E + GV L+ + A+ I + L
Sbjct: 137 FEFSYDRLLIATGVRPVMPEWEGRDLQGVH----LLKTIPDAERILKTL----------- 181
Query: 75 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS 134
E +++ ++GGG G+E + + + V +IE N+ + +
Sbjct: 182 ----ETNKVEDVTIIGGGAIGLEMAETFVELGKK--------------VRMIERNDHIGT 223
Query: 135 -FDDRLRHYATTQLSKSGVRLVRG----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189
+D + Y + K + ++ K + + + D L++ S GV P+
Sbjct: 224 IYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPN 283
Query: 190 T-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
T ++ ++ + G I ++ +++ +VQDV+A GDC+
Sbjct: 284 TDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDCA 320
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 35/238 (14%)
Query: 23 SYDKLVIALGAEASTFGIHG--VKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 79
+YDKL+ A G++ I G +KE + F + + Q + KL N +DV I++ E
Sbjct: 137 TYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFV--KLYQNS--ADV--IAKLE 190
Query: 80 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDR 138
+ VVG G GVE L++ R ++ V LI+ + L+ + DR
Sbjct: 191 NKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLAGYYDR 236
Query: 139 -LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 193
L + + G++L G VK+V + I+ D E +++ + G P+T +
Sbjct: 237 DLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTTLG 296
Query: 194 S--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVAERQG 248
+ +DL ++ + + +P V +A+GDC+ Y +T T ALA A R G
Sbjct: 297 NGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALASNAVRTG 351
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 35/238 (14%)
Query: 23 SYDKLVIALGAEASTFGIHG--VKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 79
+YDKL+ A G++ I G +KE + F + + Q + KL N +DV I++ E
Sbjct: 137 TYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFV--KLYQNS--ADV--IAKLE 190
Query: 80 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDR 138
+ VVG G GVE L++ R ++ V LI+ + L+ + DR
Sbjct: 191 NKDIKRVAVVGAGYIGVE----LAEAFQRKGKE----------VVLIDVVDTCLAGYYDR 236
Query: 139 -LRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 193
L + + G++L G VK+V + I+ D E +++ + G P+T +
Sbjct: 237 DLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTTLG 296
Query: 194 S--LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVAERQG 248
+ +DL ++ + + +P V +A+GDC+ Y +T T ALA A R G
Sbjct: 297 NGKIDLFRNGAFLVNKRQETSIPGV---YAIGDCATIYDNATRDTNYIALASNAVRTG 351
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 113/290 (38%), Gaps = 37/290 (12%)
Query: 24 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL----NLMLSDVPGIS-EE 78
YD +++ +GA +T + G + + E A ++R KL N+ + P
Sbjct: 102 YDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN 161
Query: 79 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK---DYIHVTLIEANEILSSF 135
K ++ V + + E F M + Y K D +HVT+ E LS
Sbjct: 162 PKPKVPENFV-----PNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDL 216
Query: 136 DDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYG---LLVWSTGVGPSTL 191
R + ++ G++LV +K++ +++ G +P LL TG P+
Sbjct: 217 SPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTG-NPALK 275
Query: 192 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS-------GYLE-STGKTVLPALAQ- 242
+ DL GG I D + +V+AVGD + GYL TG+ LA
Sbjct: 276 NSTPDLVDD-GGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334
Query: 243 --VAERQGKYLFSLLNRIGKAGGGRANSAKD-------MELGDPFVYRHL 283
V + KY +++ G A S KD + + DP HL
Sbjct: 335 LGVPTKVDKYYPTIVCVADNPYEGYAVSVKDDTWYGGTVSIADPAAVNHL 384
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 44/179 (24%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 145
VV+GGG G+E ++F + VT++E A EILS F+ ++
Sbjct: 174 VVIGGGYIGIELGTAYANFGTK--------------VTILEGAGEILSGFEKQMAAIIKK 219
Query: 146 QLSKSGVRLV-RGIVKDVDSQKLILNDGTEVPY-----------GLLVWSTGVGPST--- 190
+L K GV +V + K + ++ DG V Y ++ + G P+T
Sbjct: 220 RLKKKGVEVVTNALAKGAEERE----DGVTVTYEANGETKTIDADYVLVTVGRRPNTDEL 275
Query: 191 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249
++ + + + G I +D+ R SV ++FA+GD PALA A +GK
Sbjct: 276 GLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDI---------VPGPALAHKASYEGK 324
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 27/209 (12%)
Query: 20 FKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 78
F+ SYD+L+IA G G + L+ + A+ I + L
Sbjct: 137 FEFSYDRLLIATGVRPVXPEWEGRDLQGVHLLKTIPDAERILKTL--------------- 181
Query: 79 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR 138
E +++ ++GGG G+E + F+ + R D+I T+ + + + +
Sbjct: 182 ETNKVEDVTIIGGGAIGLEXA---ETFVELGKKVRXIERNDHIG-TIYDGDXAEYIYKEA 237
Query: 139 LRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDL 197
+H+ L+ V+ +G + + + D L++ S GV P+T ++ ++
Sbjct: 238 DKHHIEI-LTNENVKAFKG----NERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNI 292
Query: 198 PKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
+ G I ++ + + +VQDV+A GDC+
Sbjct: 293 RTNHKGAIEVNAYXQT-NVQDVYAAGDCA 320
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VGGG GVEF+ + F V+ H D IL +FD LR
Sbjct: 195 VIVGGGYIGVEFA---NIFHGLGVKTTLLHRGDL----------ILRNFDYDLRQLLNDA 241
Query: 147 LSKSGVRLV-RGIVKDVDSQK----LILNDGTEVPYGLLVWSTGVGPSTLVKSLD---LP 198
+ G+ ++ V V S + ++L +G + ++ +TG P+T L+ +
Sbjct: 242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVK 301
Query: 199 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 243
+ G + +DE + +V ++AVGD +G+++ T + A+ V
Sbjct: 302 VNEFGAVVVDEKM-TTNVSHIWAVGDVTGHIQLTPVAIHDAMCFV 345
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 34/231 (14%)
Query: 3 VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRK 62
++C + T+E L++A+GA T + GV F HA +
Sbjct: 154 LNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVF----DHATLVEE- 208
Query: 63 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 122
L PG + VVVGG T VE+ F R+ V+
Sbjct: 209 ------LDYEPGST---------VVVVGGSKTAVEYGC----FFNATGRRTVMLVRTE-P 248
Query: 123 VTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR----GIVKDVDSQKLILNDGTEVPYG 178
+ LI+ NE + DR++ +S S V + G V+ V + + N +
Sbjct: 249 LKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA--MTPNGEMRIETD 306
Query: 179 LLVWSTGVGP--STLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 227
+ G P + L K L L P G + ++E+L+ SV +V+AVGD G
Sbjct: 307 FVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIG 356
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 24/126 (19%)
Query: 124 TLIEANEILSSFDDR--LRH----------YATTQLSKSGVRLV-RGIVKDVDSQKLI-- 168
+ +E EILSS+ + L H Y T K V V +VK++ K++
Sbjct: 165 SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQ 224
Query: 169 -----LNDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 220
L G E+ + G P T KS + G I +DEW+R SV VF
Sbjct: 225 VVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVF 283
Query: 221 AVGDCS 226
A GDC+
Sbjct: 284 AAGDCT 289
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 24/126 (19%)
Query: 124 TLIEANEILSSFDDR--LRH----------YATTQLSKSGVRLV-RGIVKDVDSQKLI-- 168
+ +E EILSS+ + L H Y T K V V +VK++ K++
Sbjct: 165 SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQ 224
Query: 169 -----LNDG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 220
L G E+ + G P T KS + G I +DEW+R SV VF
Sbjct: 225 VVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVF 283
Query: 221 AVGDCS 226
A GDC+
Sbjct: 284 AAGDCT 289
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 190 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 236
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 237 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 296
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 297 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 347
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 192 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 238
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 239 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 298
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 299 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 349
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 176 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 222
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 223 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 282
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 283 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 333
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 331
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 174 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 220
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 221 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 280
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 281 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 331
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 22 ISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEK 80
I Y LV+A GA + + +LR + ++ +R+++ ++K
Sbjct: 97 IEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM-------------PDKK 143
Query: 81 SRLLHCVVVGGGPTGVEFSGEL-SDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 139
H VV+G G G+EF+ + + DV + V + + EI S F D
Sbjct: 144 ----HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV-----MARVVTPEISSYFHD-- 192
Query: 140 RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 199
RH GVR + ++L+DG +P L+V GV P+ + +
Sbjct: 193 RHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLP 252
Query: 200 SPGGRIGIDEWLRVPSVQDVFAVGDCS 226
+ G I +D+ L + S + A+GDC+
Sbjct: 253 TAAGII-VDQQL-LTSDPHISAIGDCA 277
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 101/265 (38%), Gaps = 58/265 (21%)
Query: 13 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSD 71
R L+ +++ SYD L+++ GA I GV T LR + I + + N
Sbjct: 95 RLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTIQXN----- 149
Query: 72 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 130
+ H VVGGG FI + + H+ I TL+E A++
Sbjct: 150 ----------NVEHATVVGGG------------FIGLEXXESLHHLG--IKTTLLELADQ 185
Query: 131 ILSSFDDRLRHYATTQLSKSGVRLVRGIV------------------KDVDSQ------K 166
+ + D +A + GV L G +D Q
Sbjct: 186 VXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS 245
Query: 167 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 225
L L++G + LL+ + GV P T L + L G I ++ + S ++AVGD
Sbjct: 246 LTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQT-SDPAIYAVGDA 304
Query: 226 SGYLE-STGKTVLPALAQVAERQGK 249
+ TG+ L LA A RQG+
Sbjct: 305 VEEQDFVTGQACLVPLAGPANRQGR 329
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNCTEE 237
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD 297
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 101/265 (38%), Gaps = 58/265 (21%)
Query: 13 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSD 71
R L+ +++ SYD L+++ GA I GV T LR + I + + N
Sbjct: 95 RLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTIQXN----- 149
Query: 72 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 130
+ H VVGGG FI + + H+ I TL+E A++
Sbjct: 150 ----------NVEHATVVGGG------------FIGLEXXESLHHLG--IKTTLLELADQ 185
Query: 131 ILSSFDDRLRHYATTQLSKSGVRLVRGIV------------------KDVDSQ------K 166
+ + D +A + GV L G +D Q
Sbjct: 186 VXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS 245
Query: 167 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 225
L L++G + LL+ + GV P T L + L G I ++ + S ++AVGD
Sbjct: 246 LTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQT-SDPAIYAVGDA 304
Query: 226 SGYLE-STGKTVLPALAQVAERQGK 249
+ TG+ L LA A RQG+
Sbjct: 305 VEEQDFVTGQACLVPLAGPANRQGR 329
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 37/178 (20%)
Query: 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 146
V+VG G VE +G LS + +I +++L SFD + T +
Sbjct: 191 VIVGAGYIAVEMAGILSALGSKTS-------------LMIRHDKVLRSFDSMISTNXTEE 237
Query: 147 LSKSGVRLVR-GIVKDVDS--QKLILNDGTEVPYGL-----------LVWSTGVGPSTLV 192
L +GV +++ VK+V L ++ T VP L L+W+ G P+T
Sbjct: 238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKD 297
Query: 193 KSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247
SL+ + G I +DE+ +V+ ++AVGD GK +L +A A R+
Sbjct: 298 LSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC------GKALLTPVAIAAGRK 348
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 101 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 146
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 147 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 198
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 199 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 247
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 248 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 279
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 19 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 77
+F+ SYDKL+++ GA A++ G + + TF LR + I + + N
Sbjct: 100 QFEESYDKLILSPGASANSLGF---ESDITFTLRNLEDTDAIDQFIKAN----------- 145
Query: 78 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSS 134
++ +VVG G +E L + R + H D I+ L++A+ IL
Sbjct: 146 ----QVDKVLVVGAGYVSLEV---LENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDE 197
Query: 135 FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STLVK 193
D R Y RL I ++ ++ G Y +++ G P S ++
Sbjct: 198 LDKREIPY----------RLNEEI-NAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE 246
Query: 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
S ++ G I +++ +V +++A+GD +
Sbjct: 247 SSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIA 278
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 129 NEILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLI--LNDGTEVP-YGLLV 181
N IL FD+ + + + K+ + +V +K V + L L+DG + ++
Sbjct: 209 NRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVI 268
Query: 182 WSTGVGPSTLVKSLDLPK----SPGGRIGIDEWLRVPSVQDVFAVGDC 225
+ G P T ++L L K + I +DE R SV +++AVGDC
Sbjct: 269 YCVGRSPDT--ENLKLEKLNVETNNNYIVVDENQRT-SVNNIYAVGDC 313
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 88 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 147
++G G G+E +G L F + V +E + +L FD L +
Sbjct: 171 IIGAGYIGIELAGLLRSF------------GSEVTVVALE-DRLLFQFDPLLSATLAENM 217
Query: 148 SKSGVRL-----VRGIVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTL---VKSLDLP 198
G+ V + +D L+ DGT + + ++W+ G P+T +++ +
Sbjct: 218 HAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE 277
Query: 199 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246
G + D + +V V+A+GD +G + T + A ++AER
Sbjct: 278 VQSNGMVPTDAYQNT-NVPGVYALGDITGRDQLT-PVAIAAGRRLAER 323
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 161 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 191
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 161 DVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 191
D + + L+DG +PYG LV +TG P L
Sbjct: 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRAL 116
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 171 DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID----EWLRVPSVQDVFAVGDC 225
DGTE + ++W TG P+ + +K LDL +P G++ +D L VPSV + GD
Sbjct: 268 DGTERAFDAVIWCTGFRPALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVW-LLGYGDW 325
Query: 226 SGYLEST 232
+G +T
Sbjct: 326 NGMASAT 332
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 193 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAV 222
P PG GID + +P++ + AV
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAV 172
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 133 SSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+++ DR+ L K+ V +++G + VD++ L +N G + ++ +TG PS
Sbjct: 89 TAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN-GETITADHILIATGGRPSH-- 145
Query: 193 KSLDLPKSPGGRIGIDE--WLRVPSVQDVFAV 222
P PG GID + +P++ + AV
Sbjct: 146 -----PDIPGVEYGIDSDGFFALPALPERVAV 172
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 104 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 163
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNAVR 65
Query: 164 SQKLILNDGTEVPYGLLVWSTG 185
S L+ + P ++ S+G
Sbjct: 66 S--LVPDALERKPKAVVTHSSG 85
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 104 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 163
D DV + + +++D IH+T + + IL+ R + K+G +RG + V
Sbjct: 6 DISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVR 65
Query: 164 SQKLILNDGTE-VPYGLLVWSTG 185
S ++ D E P ++ S+G
Sbjct: 66 S---LVPDALERKPKAVVTHSSG 85
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIP|B Chain B, Crystal Structure Of Yeast Spt16 N-Terminal Domain
pdb|3BIQ|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain
Length = 467
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 175 VPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLR---VPSVQDVFAVGDCSGYLES 231
VP +++ ++ L K++DL K P +I ++ W R P + D + S
Sbjct: 70 VPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKL-FDDVIALINS 128
Query: 232 TGKTVLPALAQVAERQGKYL 251
GKTV + + QGK++
Sbjct: 129 AGKTV--GIPEKDSYQGKFM 146
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%)
Query: 42 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 101
G+ + ++E + +EI K+ L+ ++E+E +C+ + P+G G
Sbjct: 13 GLVPRGSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGH 72
Query: 102 LSDFIMRDVRQRYSHV 117
+ ++ + DV RY +
Sbjct: 73 VRNYTIGDVIARYQRM 88
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 31/168 (18%)
Query: 77 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD 136
EE+ ++ VVVG G G+E +G +H+ +I +L FD
Sbjct: 182 EEQPKKV---VVVGAGYIGIELAGVFHGL------GSETHL-------VIRGETVLRKFD 225
Query: 137 DRLRHYATTQLSKSGVRL--VRGIVK-----DVDSQKLILNDGTEV-PYGLLVWSTG--- 185
+ +++ T K G+ + + IVK + D K+ +ND + L+W+ G
Sbjct: 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS 285
Query: 186 -VGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 232
+G + +++ + + +I DE+ +V +++++GD G +E T
Sbjct: 286 HLGMGS--ENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVGKVELT 330
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 38/154 (24%)
Query: 88 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE------ANEILSSFDDRLR- 140
V+GGG +GVE + +L+ + HVTL+E A+++L D++R
Sbjct: 360 VIGGGNSGVEAAIDLAGIVE--------------HVTLLEFAPEMKADQVLQ---DKVRS 402
Query: 141 --------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192
+ TT++ G ++V ++ + + D V + G+ P+T
Sbjct: 403 LKNVDIILNAQTTEVKGDGSKVV-----GLEYRDRVSGDIHSVALAGIFVQIGLLPNTHW 457
Query: 193 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
L ++ G I ID SV+ VFA GDC+
Sbjct: 458 LEGALERNRMGEIIIDAKCET-SVKGVFAAGDCT 490
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 21 KISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISEEE 79
++ Y LV+A GAE + G ++A + + ++ R+ +
Sbjct: 99 EVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQ--------------AAAG 144
Query: 80 KSRLLHCVVVGGGPTGVEFSGELSD--FIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD 137
K R+L ++G G G EF+ +LS + + V + +H +A +
Sbjct: 145 KRRVL---LLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQ------- 194
Query: 138 RLRHYATTQLSKSGVRLVRGIV-----KDVDSQKLILNDGTEVPYGLLVWSTGVGPST-L 191
L GVR G V K + + L+DG +P L+V + G+ P T L
Sbjct: 195 -------AGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTEL 247
Query: 192 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 226
+ L + G I +D LR S +++A+GDC+
Sbjct: 248 AFAAGLAVNRG--IVVDRSLRT-SHANIYALGDCA 279
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 29/172 (16%)
Query: 85 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEIL-SSFDDRLRHY 142
H +VVG G TG EF ++ + V HV Y +A +L SF +R
Sbjct: 184 HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDA---DAALVLEESFAERGVRL 240
Query: 143 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 202
+ S R G++ + + DG V + + G P+T L L + G
Sbjct: 241 FKNARAASVTRTGAGVL-------VTMTDGRTVEGSHALMTIGSVPNT--SGLGLERV-G 290
Query: 203 GRIGIDEWLRVPSVQ-----DVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249
++G +L V V ++A GDC+G L LA VA QG+
Sbjct: 291 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP---------LASVAAMQGR 333
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD- 137
+ H V++G G G+ + E+ + + DY + +N + DD
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 138 --RLRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 185
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD- 137
+ H V++G G G+ + E+ + + DY + +N + DD
Sbjct: 1 MAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ--FVPSNPWVGVGWKERDDI 58
Query: 138 --RLRHYATTQLSKSGVRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTG 185
+RHY + + G+ + + +D+ Q + L DG V Y L+ +TG
Sbjct: 59 AFPIRHY----VERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,717,817
Number of Sequences: 62578
Number of extensions: 451802
Number of successful extensions: 1364
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 95
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)