Query 018671
Match_columns 352
No_of_seqs 384 out of 2751
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 1.1E-64 2.3E-69 458.9 21.9 325 19-352 154-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 1.3E-62 2.8E-67 457.3 33.6 321 4-349 79-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 2E-56 4.3E-61 430.2 37.9 315 18-352 108-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 3.9E-41 8.5E-46 318.5 30.4 285 5-328 76-363 (364)
5 PRK09754 phenylpropionate diox 100.0 5.3E-32 1.1E-36 258.8 25.2 217 7-257 83-308 (396)
6 PRK13512 coenzyme A disulfide 100.0 5E-32 1.1E-36 261.9 23.6 204 21-256 103-310 (438)
7 TIGR03385 CoA_CoA_reduc CoA-di 100.0 5.3E-31 1.1E-35 254.5 23.5 208 19-256 85-302 (427)
8 PRK04965 NADH:flavorubredoxin 100.0 7E-31 1.5E-35 249.6 23.6 213 5-257 81-301 (377)
9 PRK14989 nitrite reductase sub 100.0 5E-31 1.1E-35 270.3 24.0 216 5-257 82-309 (847)
10 PRK09564 coenzyme A disulfide 100.0 1.1E-30 2.4E-35 253.5 23.7 209 19-257 97-316 (444)
11 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-29 2.3E-34 260.5 23.8 214 5-257 77-300 (785)
12 PRK07846 mycothione reductase; 100.0 2E-29 4.4E-34 244.3 23.2 195 16-257 121-324 (451)
13 PLN02507 glutathione reductase 100.0 5.8E-29 1.3E-33 243.6 25.1 188 21-256 165-361 (499)
14 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.4E-29 5.1E-34 240.2 21.4 193 19-257 131-334 (454)
15 TIGR01424 gluta_reduc_2 glutat 100.0 3.3E-29 7.1E-34 242.9 21.3 200 9-256 116-324 (446)
16 TIGR01423 trypano_reduc trypan 100.0 3.1E-29 6.8E-34 244.2 20.0 192 20-256 148-349 (486)
17 TIGR01421 gluta_reduc_1 glutat 100.0 9.8E-29 2.1E-33 239.6 22.9 191 18-256 124-326 (450)
18 TIGR01438 TGR thioredoxin and 100.0 2.2E-28 4.7E-33 238.7 20.7 193 19-257 139-343 (484)
19 PRK06116 glutathione reductase 100.0 4.5E-28 9.7E-33 235.5 22.7 191 18-256 126-326 (450)
20 PLN02546 glutathione reductase 100.0 2.7E-28 5.8E-33 240.3 20.6 192 18-257 211-412 (558)
21 PRK06370 mercuric reductase; V 100.0 5.1E-28 1.1E-32 235.9 22.2 194 18-257 128-333 (463)
22 PRK07845 flavoprotein disulfid 100.0 6E-28 1.3E-32 235.2 21.5 189 21-256 137-335 (466)
23 PRK14727 putative mercuric red 100.0 1E-27 2.3E-32 234.3 22.9 190 20-256 147-344 (479)
24 TIGR03452 mycothione_red mycot 100.0 5.4E-28 1.2E-32 234.5 20.2 195 16-257 124-327 (452)
25 TIGR02053 MerA mercuric reduct 100.0 8.9E-28 1.9E-32 234.2 21.5 192 20-257 125-328 (463)
26 PRK06416 dihydrolipoamide dehy 100.0 9.3E-28 2E-32 234.1 19.8 192 19-257 130-333 (462)
27 PRK14694 putative mercuric red 100.0 1.8E-27 3.8E-32 232.2 21.0 190 20-256 137-333 (468)
28 PRK05249 soluble pyridine nucl 100.0 2.2E-27 4.8E-32 231.4 21.7 191 20-256 134-333 (461)
29 PRK13748 putative mercuric red 100.0 3.6E-27 7.7E-32 235.3 23.6 191 20-256 229-426 (561)
30 PRK08010 pyridine nucleotide-d 100.0 1.8E-27 3.9E-32 230.7 20.3 192 20-256 116-315 (441)
31 KOG1336 Monodehydroascorbate/f 100.0 1.9E-27 4.1E-32 220.4 19.0 222 5-259 150-384 (478)
32 PRK06467 dihydrolipoamide dehy 100.0 4.3E-27 9.3E-32 229.4 22.2 190 20-257 133-336 (471)
33 PTZ00052 thioredoxin reductase 100.0 5.4E-27 1.2E-31 229.9 22.0 191 19-256 140-339 (499)
34 PTZ00058 glutathione reductase 100.0 5.4E-27 1.2E-31 231.1 21.7 199 18-257 197-431 (561)
35 PRK07818 dihydrolipoamide dehy 100.0 4.4E-27 9.5E-32 229.4 20.9 188 20-256 132-334 (466)
36 TIGR01350 lipoamide_DH dihydro 100.0 8.8E-27 1.9E-31 227.2 21.5 192 20-257 128-331 (461)
37 PRK06115 dihydrolipoamide dehy 99.9 2.8E-26 6E-31 223.5 22.8 190 20-257 133-337 (466)
38 PRK06292 dihydrolipoamide dehy 99.9 4E-26 8.6E-31 222.5 22.4 193 18-257 125-330 (460)
39 PTZ00153 lipoamide dehydrogena 99.9 2.8E-26 6.1E-31 228.8 20.5 194 18-257 269-494 (659)
40 PRK06912 acoL dihydrolipoamide 99.9 2.5E-26 5.5E-31 223.5 19.6 189 20-256 129-328 (458)
41 PRK07251 pyridine nucleotide-d 99.9 5.8E-26 1.3E-30 220.0 20.4 193 19-256 114-314 (438)
42 PRK06327 dihydrolipoamide dehy 99.9 7.4E-26 1.6E-30 221.1 19.8 191 19-256 141-345 (475)
43 TIGR01292 TRX_reduct thioredox 99.9 8.8E-26 1.9E-30 207.6 18.1 195 16-258 93-299 (300)
44 PRK10262 thioredoxin reductase 99.9 7.2E-26 1.6E-30 210.6 16.7 202 15-260 97-315 (321)
45 PRK05976 dihydrolipoamide dehy 99.9 4.4E-25 9.5E-30 215.7 22.6 190 20-256 139-341 (472)
46 COG1251 NirB NAD(P)H-nitrite r 99.9 2.8E-25 6E-30 215.0 16.4 215 5-258 82-306 (793)
47 TIGR01316 gltA glutamate synth 99.9 2.3E-24 5E-29 208.9 16.9 201 21-258 216-448 (449)
48 KOG0405 Pyridine nucleotide-di 99.9 1.3E-24 2.8E-29 193.1 13.6 189 20-256 150-348 (478)
49 TIGR03140 AhpF alkyl hydropero 99.9 2E-24 4.4E-29 212.7 15.9 196 16-259 304-512 (515)
50 PRK12770 putative glutamate sy 99.9 6.1E-24 1.3E-28 200.1 16.0 205 21-260 116-350 (352)
51 TIGR03143 AhpF_homolog putativ 99.9 3.2E-23 7E-28 205.8 17.3 199 15-260 94-309 (555)
52 PRK11749 dihydropyrimidine deh 99.9 7.1E-23 1.5E-27 199.3 19.4 199 21-260 223-452 (457)
53 COG0446 HcaD Uncharacterized N 99.9 1.2E-22 2.6E-27 194.9 20.7 221 5-257 76-309 (415)
54 PRK12831 putative oxidoreducta 99.9 7.4E-23 1.6E-27 198.9 18.1 202 21-260 226-461 (464)
55 PRK15317 alkyl hydroperoxide r 99.9 6.9E-23 1.5E-27 202.1 16.5 196 17-260 304-512 (517)
56 PRK09853 putative selenate red 99.9 4.7E-22 1E-26 203.7 20.3 197 20-259 620-841 (1019)
57 COG0492 TrxB Thioredoxin reduc 99.9 5.6E-22 1.2E-26 181.0 17.0 197 12-260 92-301 (305)
58 KOG4716 Thioredoxin reductase 99.9 1.6E-22 3.4E-27 179.3 12.0 193 19-257 157-364 (503)
59 PRK12778 putative bifunctional 99.9 1E-21 2.2E-26 201.8 16.7 203 20-260 514-750 (752)
60 TIGR03315 Se_ygfK putative sel 99.9 6.2E-21 1.3E-25 196.4 20.9 228 21-291 619-872 (1012)
61 KOG1335 Dihydrolipoamide dehyd 99.9 2.2E-21 4.7E-26 174.7 14.3 191 16-256 166-375 (506)
62 PRK12810 gltD glutamate syntha 99.9 9.5E-21 2.1E-25 184.9 19.6 208 21-260 226-465 (471)
63 PRK13984 putative oxidoreducta 99.9 1.5E-20 3.3E-25 188.9 19.3 204 21-260 366-602 (604)
64 PRK12814 putative NADPH-depend 99.9 1.8E-20 3.9E-25 189.1 19.4 194 22-260 277-501 (652)
65 KOG1346 Programmed cell death 99.8 2.5E-21 5.4E-26 175.8 8.8 221 11-260 287-521 (659)
66 PRK12779 putative bifunctional 99.8 2.9E-19 6.3E-24 185.5 21.2 205 21-260 390-627 (944)
67 TIGR01318 gltD_gamma_fam gluta 99.8 3.4E-19 7.4E-24 173.5 20.0 204 22-259 225-465 (467)
68 TIGR01317 GOGAT_sm_gam glutama 99.8 9.3E-19 2E-23 171.1 19.2 210 21-260 226-479 (485)
69 PRK12769 putative oxidoreducta 99.8 1.6E-18 3.4E-23 175.6 20.5 205 22-260 411-652 (654)
70 KOG3851 Sulfide:quinone oxidor 99.8 1.5E-18 3.2E-23 153.1 16.6 225 11-260 121-361 (446)
71 PRK12775 putative trifunctiona 99.8 1.3E-18 2.7E-23 182.3 18.5 203 22-260 516-755 (1006)
72 PRK12809 putative oxidoreducta 99.8 8.8E-18 1.9E-22 169.5 20.6 205 21-260 393-635 (639)
73 PRK12771 putative glutamate sy 99.7 1.3E-16 2.9E-21 159.1 19.4 193 23-260 222-444 (564)
74 TIGR01372 soxA sarcosine oxida 99.7 3.4E-16 7.4E-21 164.8 20.7 189 21-259 272-471 (985)
75 KOG0404 Thioredoxin reductase 99.7 8.9E-17 1.9E-21 135.3 9.9 202 9-253 98-312 (322)
76 COG3634 AhpF Alkyl hydroperoxi 99.7 1.7E-16 3.8E-21 141.6 12.0 189 13-252 303-507 (520)
77 PLN02172 flavin-containing mon 99.6 1.5E-15 3.3E-20 147.2 11.6 180 21-256 159-349 (461)
78 PLN02852 ferredoxin-NADP+ redu 99.6 8.2E-15 1.8E-19 142.0 16.5 221 21-260 112-422 (491)
79 PF07992 Pyr_redox_2: Pyridine 99.5 4.8E-14 1E-18 121.9 6.6 129 85-228 1-199 (201)
80 PF00743 FMO-like: Flavin-bind 99.5 3.4E-13 7.4E-18 132.6 13.0 189 20-255 135-392 (531)
81 PF00070 Pyr_redox: Pyridine n 99.4 4.1E-12 8.9E-17 93.1 9.8 74 85-172 1-80 (80)
82 KOG2755 Oxidoreductase [Genera 99.3 7.3E-12 1.6E-16 108.3 10.9 180 14-228 83-322 (334)
83 COG0493 GltD NADPH-dependent g 99.3 1.5E-11 3.2E-16 118.3 12.1 213 15-257 200-448 (457)
84 KOG0399 Glutamate synthase [Am 99.2 4.9E-11 1.1E-15 120.2 8.6 226 4-259 1851-2119(2142)
85 PRK06567 putative bifunctional 99.2 6.8E-10 1.5E-14 113.8 17.0 197 21-260 495-770 (1028)
86 COG3486 IucD Lysine/ornithine 99.1 1.1E-08 2.4E-13 94.4 18.3 205 14-252 136-408 (436)
87 TIGR01292 TRX_reduct thioredox 98.9 1.6E-08 3.4E-13 92.8 12.4 91 85-189 2-113 (300)
88 PF13434 K_oxygenase: L-lysine 98.9 4.2E-09 9.1E-14 98.4 7.2 139 17-187 141-340 (341)
89 COG2072 TrkA Predicted flavopr 98.8 8.6E-08 1.9E-12 92.9 15.3 75 22-129 131-207 (443)
90 PRK09754 phenylpropionate diox 98.8 2.6E-08 5.5E-13 95.5 10.7 95 84-190 4-114 (396)
91 PRK05329 anaerobic glycerol-3- 98.7 1.3E-07 2.9E-12 90.6 13.0 157 87-258 219-419 (422)
92 TIGR03169 Nterm_to_SelD pyridi 98.7 1E-07 2.2E-12 90.3 10.4 94 85-189 1-108 (364)
93 PF13738 Pyr_redox_3: Pyridine 98.7 5.4E-09 1.2E-13 90.4 1.4 86 9-130 111-200 (203)
94 PRK04176 ribulose-1,5-biphosph 98.7 2.9E-06 6.3E-11 76.3 18.6 158 85-260 27-255 (257)
95 COG2081 Predicted flavoprotein 98.6 4.4E-07 9.5E-12 84.1 11.8 89 85-187 5-166 (408)
96 PRK09564 coenzyme A disulfide 98.6 2.5E-07 5.4E-12 90.1 10.7 93 85-189 2-116 (444)
97 PTZ00318 NADH dehydrogenase-li 98.6 2.6E-07 5.6E-12 89.4 10.3 94 82-189 9-126 (424)
98 COG1252 Ndh NADH dehydrogenase 98.6 1.9E-07 4.1E-12 88.1 8.9 95 84-190 4-113 (405)
99 TIGR01424 gluta_reduc_2 glutat 98.5 7E-07 1.5E-11 86.9 11.8 91 85-189 4-143 (446)
100 TIGR00292 thiazole biosynthesi 98.5 1.5E-05 3.2E-10 71.5 19.3 156 85-258 23-252 (254)
101 TIGR03140 AhpF alkyl hydropero 98.5 1.1E-06 2.3E-11 87.2 12.1 95 81-189 210-324 (515)
102 PRK06116 glutathione reductase 98.5 8.1E-07 1.8E-11 86.6 10.8 90 85-189 6-144 (450)
103 PRK13512 coenzyme A disulfide 98.5 8.5E-07 1.8E-11 86.2 10.7 94 84-189 2-118 (438)
104 TIGR02374 nitri_red_nirB nitri 98.5 8.2E-07 1.8E-11 92.1 11.0 93 86-189 1-109 (785)
105 PRK15317 alkyl hydroperoxide r 98.5 1.7E-06 3.7E-11 85.8 12.7 93 83-189 211-323 (517)
106 KOG1399 Flavin-containing mono 98.4 5.1E-07 1.1E-11 86.8 8.0 133 20-196 138-278 (448)
107 PRK04965 NADH:flavorubredoxin 98.4 1.5E-06 3.3E-11 82.7 11.1 93 84-189 3-112 (377)
108 PRK14989 nitrite reductase sub 98.4 1.7E-06 3.6E-11 90.1 12.0 96 84-189 4-114 (847)
109 COG1148 HdrA Heterodisulfide r 98.4 9.2E-06 2E-10 76.7 15.4 217 20-260 297-545 (622)
110 PF13738 Pyr_redox_3: Pyridine 98.4 2.1E-06 4.6E-11 74.1 9.3 89 87-189 1-139 (203)
111 PRK11749 dihydropyrimidine deh 98.4 1.1E-06 2.4E-11 85.9 8.3 90 81-188 138-237 (457)
112 PF03486 HI0933_like: HI0933-l 98.3 3.7E-06 8E-11 80.5 11.1 90 85-188 2-166 (409)
113 PRK07251 pyridine nucleotide-d 98.3 4.1E-06 8.9E-11 81.4 11.5 91 85-189 5-131 (438)
114 PRK09853 putative selenate red 98.3 4E-06 8.7E-11 87.5 11.8 89 81-189 537-636 (1019)
115 PRK05976 dihydrolipoamide dehy 98.3 5.5E-06 1.2E-10 81.3 12.1 93 84-190 5-156 (472)
116 PRK12779 putative bifunctional 98.3 2E-06 4.4E-11 90.4 9.4 92 81-189 304-406 (944)
117 PRK06847 hypothetical protein; 98.3 8.1E-06 1.8E-10 77.5 12.4 53 137-189 107-164 (375)
118 PRK10262 thioredoxin reductase 98.3 7.8E-06 1.7E-10 76.0 11.9 92 84-189 7-118 (321)
119 TIGR01421 gluta_reduc_1 glutat 98.3 6.4E-06 1.4E-10 80.3 11.6 90 85-189 4-142 (450)
120 PF01134 GIDA: Glucose inhibit 98.3 9.9E-06 2.2E-10 76.3 11.5 88 85-186 1-150 (392)
121 PRK06416 dihydrolipoamide dehy 98.3 8.2E-06 1.8E-10 79.9 11.5 91 85-189 6-147 (462)
122 TIGR03143 AhpF_homolog putativ 98.2 1E-05 2.2E-10 81.0 11.8 91 84-189 5-115 (555)
123 PLN02172 flavin-containing mon 98.2 2.5E-05 5.3E-10 76.2 14.1 91 83-187 10-172 (461)
124 PRK07845 flavoprotein disulfid 98.2 1.4E-05 3E-10 78.3 12.3 92 84-189 2-152 (466)
125 COG1635 THI4 Ribulose 1,5-bisp 98.2 8.7E-05 1.9E-09 63.5 15.3 158 85-260 32-260 (262)
126 TIGR01316 gltA glutamate synth 98.2 5.2E-06 1.1E-10 80.9 8.1 91 81-189 131-232 (449)
127 PRK05249 soluble pyridine nucl 98.2 1.8E-05 4E-10 77.4 11.9 91 85-189 7-150 (461)
128 PLN02463 lycopene beta cyclase 98.2 1.6E-05 3.4E-10 77.2 11.2 92 84-189 29-170 (447)
129 PRK08010 pyridine nucleotide-d 98.2 1.6E-05 3.4E-10 77.4 11.1 91 85-189 5-132 (441)
130 PLN02546 glutathione reductase 98.2 2.2E-05 4.8E-10 78.3 12.2 91 84-189 80-229 (558)
131 PRK06370 mercuric reductase; V 98.1 1.5E-05 3.3E-10 78.0 10.9 91 84-189 6-146 (463)
132 PRK12831 putative oxidoreducta 98.1 6.2E-06 1.3E-10 80.6 7.9 92 80-189 137-242 (464)
133 TIGR02053 MerA mercuric reduct 98.1 1.8E-05 4E-10 77.4 11.0 91 85-189 2-141 (463)
134 PRK12770 putative glutamate sy 98.1 8.4E-06 1.8E-10 76.9 8.1 92 82-187 17-129 (352)
135 PRK06467 dihydrolipoamide dehy 98.1 2.6E-05 5.6E-10 76.5 11.8 92 84-189 5-149 (471)
136 PRK12778 putative bifunctional 98.1 8E-06 1.7E-10 84.7 8.5 92 81-189 429-531 (752)
137 TIGR01317 GOGAT_sm_gam glutama 98.1 1.3E-05 2.8E-10 78.9 9.5 87 82-187 142-239 (485)
138 PLN02852 ferredoxin-NADP+ redu 98.1 8.7E-06 1.9E-10 79.5 7.7 91 82-189 25-127 (491)
139 COG0492 TrxB Thioredoxin reduc 98.1 3.4E-05 7.3E-10 70.9 11.0 91 85-190 5-117 (305)
140 TIGR01789 lycopene_cycl lycope 98.1 2.4E-05 5.2E-10 74.3 10.1 93 86-190 2-140 (370)
141 PRK07236 hypothetical protein; 98.1 2.5E-05 5.4E-10 74.6 10.3 92 84-189 7-155 (386)
142 PRK12775 putative trifunctiona 98.1 1.2E-05 2.5E-10 85.5 8.5 92 81-189 428-531 (1006)
143 KOG1336 Monodehydroascorbate/f 98.0 1.9E-05 4.1E-10 74.8 8.7 95 83-189 74-182 (478)
144 PLN02661 Putative thiazole syn 98.0 0.00016 3.5E-09 67.3 14.6 159 85-260 94-328 (357)
145 KOG1800 Ferredoxin/adrenodoxin 98.0 0.00011 2.3E-09 67.8 13.1 75 173-260 327-407 (468)
146 TIGR03315 Se_ygfK putative sel 98.0 2.1E-05 4.6E-10 82.5 9.7 89 82-189 536-634 (1012)
147 TIGR01350 lipoamide_DH dihydro 98.0 4.8E-05 1E-09 74.4 11.4 91 85-189 3-144 (461)
148 TIGR01318 gltD_gamma_fam gluta 98.0 2E-05 4.4E-10 77.1 8.6 89 82-189 140-239 (467)
149 PRK06912 acoL dihydrolipoamide 98.0 5.1E-05 1.1E-09 74.2 11.4 91 85-189 2-145 (458)
150 PF01266 DAO: FAD dependent ox 98.0 5.6E-05 1.2E-09 70.7 10.9 56 141-197 151-212 (358)
151 PRK06834 hypothetical protein; 98.0 8.7E-05 1.9E-09 73.1 12.4 52 138-189 101-157 (488)
152 PRK08773 2-octaprenyl-3-methyl 98.0 0.00013 2.7E-09 69.9 13.3 59 138-197 114-177 (392)
153 PRK14694 putative mercuric red 97.9 9.6E-05 2.1E-09 72.5 12.0 92 84-189 7-153 (468)
154 TIGR02032 GG-red-SF geranylger 97.9 0.00011 2.3E-09 67.0 11.4 91 85-189 2-149 (295)
155 PTZ00058 glutathione reductase 97.9 0.00013 2.7E-09 72.9 12.2 31 85-129 50-80 (561)
156 COG2072 TrkA Predicted flavopr 97.9 0.00046 1E-08 67.1 15.7 129 84-227 9-186 (443)
157 PRK06292 dihydrolipoamide dehy 97.9 0.00014 3.1E-09 71.1 11.8 90 85-189 5-144 (460)
158 PRK08163 salicylate hydroxylas 97.9 0.00017 3.7E-09 69.0 12.2 50 140-189 112-167 (396)
159 PRK05192 tRNA uridine 5-carbox 97.9 0.00016 3.4E-09 72.1 11.8 89 85-187 6-156 (618)
160 PRK07333 2-octaprenyl-6-methox 97.9 0.00018 3.9E-09 68.9 12.1 60 137-197 111-175 (403)
161 PRK07588 hypothetical protein; 97.9 0.00017 3.6E-09 69.0 11.7 40 150-189 115-159 (391)
162 PLN02507 glutathione reductase 97.8 0.00019 4E-09 71.0 12.3 91 85-189 27-180 (499)
163 PRK12810 gltD glutamate syntha 97.8 5.3E-05 1.1E-09 74.3 8.4 90 81-188 141-240 (471)
164 TIGR01790 carotene-cycl lycope 97.8 0.00019 4.1E-09 68.5 11.9 89 86-188 2-141 (388)
165 PRK12809 putative oxidoreducta 97.8 5.8E-05 1.3E-09 76.8 8.4 89 82-189 309-408 (639)
166 PRK12814 putative NADPH-depend 97.8 6.1E-05 1.3E-09 76.8 8.4 90 82-189 192-291 (652)
167 PLN02697 lycopene epsilon cycl 97.8 0.00023 5.1E-09 70.3 12.1 92 84-189 109-249 (529)
168 PRK06115 dihydrolipoamide dehy 97.8 0.00017 3.7E-09 70.7 11.2 92 85-190 5-150 (466)
169 PF00743 FMO-like: Flavin-bind 97.8 0.00015 3.3E-09 71.8 10.8 129 84-227 2-194 (531)
170 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00024 5.2E-09 67.9 11.7 92 84-189 3-163 (387)
171 PRK12769 putative oxidoreducta 97.8 6.9E-05 1.5E-09 76.5 8.3 90 81-189 325-425 (654)
172 PTZ00188 adrenodoxin reductase 97.8 9.3E-05 2E-09 71.7 8.5 87 83-189 39-139 (506)
173 PRK05714 2-octaprenyl-3-methyl 97.8 0.00027 5.8E-09 67.9 11.7 51 139-189 114-169 (405)
174 PRK06184 hypothetical protein; 97.8 0.0003 6.5E-09 69.6 12.2 51 139-189 111-169 (502)
175 PRK05868 hypothetical protein; 97.8 0.00031 6.8E-09 66.8 11.7 40 150-189 117-161 (372)
176 PRK07608 ubiquinone biosynthes 97.7 0.00036 7.8E-09 66.5 12.2 51 138-189 112-168 (388)
177 PRK08244 hypothetical protein; 97.7 0.00032 6.9E-09 69.3 12.1 52 138-189 101-160 (493)
178 PRK01438 murD UDP-N-acetylmura 97.7 0.00014 3E-09 71.6 9.3 75 84-190 17-92 (480)
179 PRK07846 mycothione reductase; 97.7 0.00024 5.1E-09 69.4 10.7 43 147-189 99-141 (451)
180 PRK13748 putative mercuric red 97.7 0.00035 7.7E-09 70.1 12.0 92 84-189 99-245 (561)
181 PRK09126 hypothetical protein; 97.7 0.00046 1E-08 65.9 11.9 50 140-189 113-168 (392)
182 PF13454 NAD_binding_9: FAD-NA 97.7 0.00045 9.9E-09 57.2 10.3 37 150-186 113-155 (156)
183 PRK06753 hypothetical protein; 97.7 0.00037 8.1E-09 66.1 11.0 39 151-189 110-153 (373)
184 PRK07190 hypothetical protein; 97.7 0.0005 1.1E-08 67.7 12.0 50 139-188 111-165 (487)
185 PRK06327 dihydrolipoamide dehy 97.7 0.00056 1.2E-08 67.2 12.4 91 85-189 6-158 (475)
186 PRK09897 hypothetical protein; 97.7 0.00048 1E-08 68.2 11.7 42 148-189 118-167 (534)
187 PF05834 Lycopene_cycl: Lycope 97.7 0.00041 8.8E-09 66.0 10.9 92 86-189 2-143 (374)
188 PF01494 FAD_binding_3: FAD bi 97.7 0.00041 9E-09 64.7 10.8 53 137-189 111-173 (356)
189 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.00065 1.4E-08 64.5 12.3 52 138-189 107-164 (385)
190 PRK07818 dihydrolipoamide dehy 97.6 0.00034 7.4E-09 68.6 10.4 31 85-129 6-36 (466)
191 PRK11728 hydroxyglutarate oxid 97.6 0.00086 1.9E-08 64.2 12.9 54 143-197 155-213 (393)
192 KOG0404 Thioredoxin reductase 97.6 0.00036 7.9E-09 59.8 8.9 106 85-190 10-126 (322)
193 PTZ00188 adrenodoxin reductase 97.6 0.00066 1.4E-08 65.9 11.8 49 173-227 366-415 (506)
194 PRK08850 2-octaprenyl-6-methox 97.6 0.00066 1.4E-08 65.3 12.0 49 141-189 115-169 (405)
195 PRK07045 putative monooxygenas 97.6 0.00069 1.5E-08 64.7 12.1 52 138-189 107-166 (388)
196 PRK10157 putative oxidoreducta 97.6 0.00073 1.6E-08 65.5 12.3 50 139-188 110-164 (428)
197 PRK07364 2-octaprenyl-6-methox 97.6 0.00071 1.5E-08 65.2 12.2 51 139-189 123-182 (415)
198 PF07992 Pyr_redox_2: Pyridine 97.6 2.5E-05 5.4E-10 67.2 1.6 58 15-90 102-159 (201)
199 PRK08020 ubiF 2-octaprenyl-3-m 97.6 0.00082 1.8E-08 64.2 12.2 52 138-189 113-170 (391)
200 COG1148 HdrA Heterodisulfide r 97.6 0.0006 1.3E-08 64.8 10.6 128 24-165 54-207 (622)
201 PRK08013 oxidoreductase; Provi 97.6 0.00087 1.9E-08 64.3 12.2 51 139-189 113-169 (400)
202 COG4529 Uncharacterized protei 97.6 0.0023 5E-08 61.2 14.4 84 13-129 142-230 (474)
203 PTZ00052 thioredoxin reductase 97.6 0.00075 1.6E-08 66.7 11.6 91 85-189 7-157 (499)
204 COG0579 Predicted dehydrogenas 97.6 0.0011 2.4E-08 63.4 12.1 61 140-200 156-223 (429)
205 TIGR01372 soxA sarcosine oxida 97.6 0.00054 1.2E-08 73.1 11.2 94 83-190 163-288 (985)
206 PRK06475 salicylate hydroxylas 97.5 0.0012 2.7E-08 63.3 12.5 52 138-189 108-168 (400)
207 PRK13984 putative oxidoreducta 97.5 0.00028 6E-09 71.5 8.2 89 81-188 281-380 (604)
208 PRK12771 putative glutamate sy 97.5 0.00027 5.8E-09 71.0 7.9 89 81-189 135-235 (564)
209 TIGR00136 gidA glucose-inhibit 97.5 0.001 2.2E-08 66.2 11.6 48 141-188 100-154 (617)
210 PRK06567 putative bifunctional 97.5 0.00024 5.3E-09 73.8 7.5 35 81-129 381-415 (1028)
211 TIGR03378 glycerol3P_GlpB glyc 97.5 0.0029 6.3E-08 60.5 14.2 129 124-255 249-418 (419)
212 KOG2755 Oxidoreductase [Genera 97.5 0.00015 3.3E-09 63.5 5.0 92 85-190 1-106 (334)
213 PRK07494 2-octaprenyl-6-methox 97.5 0.0015 3.3E-08 62.3 12.3 50 139-189 113-168 (388)
214 TIGR03364 HpnW_proposed FAD de 97.5 0.0016 3.4E-08 61.6 12.2 51 141-192 149-201 (365)
215 TIGR01438 TGR thioredoxin and 97.5 0.0011 2.4E-08 65.3 11.3 91 85-189 4-156 (484)
216 PRK08849 2-octaprenyl-3-methyl 97.5 0.00077 1.7E-08 64.3 10.0 39 151-189 125-168 (384)
217 PRK06996 hypothetical protein; 97.5 0.0021 4.5E-08 61.7 13.0 52 137-188 115-174 (398)
218 TIGR00275 flavoprotein, HI0933 97.5 0.0011 2.3E-08 63.8 10.9 51 137-188 105-160 (400)
219 TIGR01423 trypano_reduc trypan 97.4 0.0014 3E-08 64.6 11.7 91 85-189 5-164 (486)
220 KOG2495 NADH-dehydrogenase (ub 97.4 0.0007 1.5E-08 63.5 8.8 96 82-191 54-173 (491)
221 TIGR02023 BchP-ChlP geranylger 97.4 0.0012 2.6E-08 63.2 10.9 51 139-189 94-156 (388)
222 PRK06617 2-octaprenyl-6-methox 97.4 0.0016 3.4E-08 62.0 11.7 51 138-189 105-161 (374)
223 PRK05732 2-octaprenyl-6-methox 97.4 0.0021 4.5E-08 61.4 12.6 49 141-189 116-170 (395)
224 PRK06183 mhpA 3-(3-hydroxyphen 97.4 0.0016 3.5E-08 65.1 12.1 52 138-189 114-175 (538)
225 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.0019 4E-08 61.5 12.0 52 138-189 106-163 (382)
226 KOG1399 Flavin-containing mono 97.4 0.0029 6.2E-08 61.2 13.0 91 84-188 7-153 (448)
227 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00047 1E-08 66.1 7.6 31 85-129 2-32 (433)
228 COG0445 GidA Flavin-dependent 97.4 0.00035 7.5E-09 67.5 6.6 89 85-187 6-157 (621)
229 KOG3851 Sulfide:quinone oxidor 97.4 7.1E-05 1.5E-09 67.4 1.8 96 82-189 38-146 (446)
230 PF04820 Trp_halogenase: Trypt 97.4 0.0016 3.6E-08 63.5 11.4 50 140-189 157-212 (454)
231 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.0015 3.4E-08 63.2 10.7 91 85-189 6-148 (454)
232 PRK06185 hypothetical protein; 97.3 0.0035 7.5E-08 60.2 12.8 52 138-189 109-170 (407)
233 PRK10015 oxidoreductase; Provi 97.3 0.0026 5.6E-08 61.7 11.9 50 139-188 110-164 (429)
234 TIGR01377 soxA_mon sarcosine o 97.3 0.0036 7.9E-08 59.4 12.6 55 141-196 149-208 (380)
235 TIGR03219 salicylate_mono sali 97.3 0.002 4.4E-08 62.1 10.6 39 151-189 117-160 (414)
236 PRK14727 putative mercuric red 97.3 0.003 6.4E-08 62.2 11.8 92 84-189 17-163 (479)
237 PRK08132 FAD-dependent oxidore 97.3 0.0033 7.2E-08 63.0 12.2 51 139-189 127-186 (547)
238 PRK11259 solA N-methyltryptoph 97.3 0.0043 9.3E-08 58.8 12.4 49 145-194 157-210 (376)
239 COG0493 GltD NADPH-dependent g 97.3 0.00053 1.1E-08 66.5 6.1 91 80-189 120-221 (457)
240 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0019 4.2E-08 64.5 10.0 94 85-189 5-114 (793)
241 TIGR02028 ChlP geranylgeranyl 97.2 0.0038 8.3E-08 59.9 11.9 22 85-106 2-23 (398)
242 COG3634 AhpF Alkyl hydroperoxi 97.2 0.0011 2.4E-08 60.6 7.4 107 81-189 209-326 (520)
243 TIGR01989 COQ6 Ubiquinone bios 97.2 0.004 8.7E-08 60.5 11.9 51 139-189 119-184 (437)
244 TIGR03452 mycothione_red mycot 97.2 0.0022 4.8E-08 62.6 10.0 40 150-189 105-144 (452)
245 PRK08243 4-hydroxybenzoate 3-m 97.2 0.0049 1.1E-07 59.0 12.1 50 140-189 106-164 (392)
246 TIGR03329 Phn_aa_oxid putative 97.1 0.0055 1.2E-07 60.0 12.0 46 143-189 189-238 (460)
247 KOG0399 Glutamate synthase [Am 97.1 0.0028 6.1E-08 65.8 9.6 120 45-189 1753-1883(2142)
248 PTZ00153 lipoamide dehydrogena 97.1 0.0045 9.8E-08 63.0 11.1 31 85-129 118-148 (659)
249 COG0644 FixC Dehydrogenases (f 97.1 0.0065 1.4E-07 58.2 11.7 91 85-189 5-153 (396)
250 PLN00093 geranylgeranyl diphos 97.0 0.0093 2E-07 58.2 12.5 23 84-106 40-62 (450)
251 KOG2311 NAD/FAD-utilizing prot 97.0 0.0021 4.5E-08 61.1 7.5 22 85-106 30-51 (679)
252 PF12831 FAD_oxidored: FAD dep 97.0 0.00063 1.4E-08 65.9 4.3 97 86-198 2-158 (428)
253 TIGR02360 pbenz_hydroxyl 4-hyd 97.0 0.0085 1.8E-07 57.3 11.8 50 140-189 106-164 (390)
254 PRK07538 hypothetical protein; 97.0 0.0079 1.7E-07 58.0 11.7 49 141-189 106-166 (413)
255 PRK06126 hypothetical protein; 96.9 0.0097 2.1E-07 59.6 11.7 51 139-189 128-189 (545)
256 KOG2820 FAD-dependent oxidored 96.9 0.017 3.7E-07 52.8 11.7 55 139-193 155-217 (399)
257 COG4529 Uncharacterized protei 96.9 0.012 2.7E-07 56.3 11.2 23 84-106 2-24 (474)
258 PRK08255 salicylyl-CoA 5-hydro 96.8 0.0056 1.2E-07 63.7 9.1 33 85-129 2-34 (765)
259 PRK01747 mnmC bifunctional tRN 96.7 0.013 2.7E-07 60.2 11.2 50 143-193 414-468 (662)
260 PRK11445 putative oxidoreducta 96.7 0.021 4.5E-07 53.8 11.8 42 148-189 109-158 (351)
261 PF01946 Thi4: Thi4 family; PD 96.6 0.039 8.4E-07 47.7 11.6 91 85-189 19-166 (230)
262 PLN02985 squalene monooxygenas 96.6 0.025 5.4E-07 56.2 11.8 52 138-189 148-209 (514)
263 COG0446 HcaD Uncharacterized N 96.6 0.011 2.5E-07 56.3 9.2 91 86-190 1-108 (415)
264 PRK11101 glpA sn-glycerol-3-ph 96.6 0.024 5.2E-07 56.8 11.6 50 147-196 159-219 (546)
265 PRK06481 fumarate reductase fl 96.5 0.031 6.8E-07 55.4 11.7 51 139-189 192-253 (506)
266 PRK08401 L-aspartate oxidase; 96.4 0.05 1.1E-06 53.4 12.3 52 138-189 121-176 (466)
267 PRK08294 phenol 2-monooxygenas 96.4 0.037 8E-07 56.4 11.7 51 139-189 143-211 (634)
268 TIGR01373 soxB sarcosine oxida 96.2 0.077 1.7E-06 50.9 12.7 52 144-196 190-248 (407)
269 KOG0405 Pyridine nucleotide-di 96.1 0.059 1.3E-06 49.6 10.2 109 85-207 22-185 (478)
270 KOG1335 Dihydrolipoamide dehyd 96.1 0.092 2E-06 49.0 11.6 123 84-223 40-218 (506)
271 PF13450 NAD_binding_8: NAD(P) 96.1 0.0096 2.1E-07 41.7 4.2 29 88-130 1-29 (68)
272 COG2509 Uncharacterized FAD-de 95.9 0.04 8.6E-07 52.5 8.5 66 135-200 171-246 (486)
273 KOG1346 Programmed cell death 95.8 0.012 2.5E-07 55.3 4.5 48 149-196 269-321 (659)
274 PRK14106 murD UDP-N-acetylmura 95.8 0.04 8.7E-07 53.7 8.7 76 84-189 6-81 (450)
275 PRK09897 hypothetical protein; 95.8 0.044 9.6E-07 54.4 8.7 86 168-259 428-524 (534)
276 PRK05335 tRNA (uracil-5-)-meth 95.7 0.011 2.3E-07 56.7 4.0 31 84-128 3-33 (436)
277 TIGR01470 cysG_Nterm siroheme 95.6 0.022 4.8E-07 49.3 5.3 74 83-189 9-83 (205)
278 PRK06854 adenylylsulfate reduc 95.4 0.23 5.1E-06 50.4 12.5 21 85-105 13-33 (608)
279 PRK05945 sdhA succinate dehydr 95.4 0.24 5.1E-06 50.0 12.4 48 141-188 139-197 (575)
280 KOG0029 Amine oxidase [Seconda 95.3 0.021 4.6E-07 56.2 4.6 36 82-131 14-50 (501)
281 TIGR01812 sdhA_frdA_Gneg succi 95.3 0.2 4.2E-06 50.5 11.7 47 142-188 134-191 (566)
282 KOG2415 Electron transfer flav 95.3 0.2 4.4E-06 47.3 10.5 106 85-198 78-269 (621)
283 PRK07804 L-aspartate oxidase; 95.3 0.2 4.3E-06 50.2 11.5 22 85-106 18-39 (541)
284 TIGR01813 flavo_cyto_c flavocy 95.2 0.28 6E-06 47.7 12.2 52 137-188 130-192 (439)
285 TIGR00551 nadB L-aspartate oxi 95.2 0.21 4.6E-06 49.3 11.2 52 138-189 129-190 (488)
286 KOG2614 Kynurenine 3-monooxyge 95.1 0.11 2.4E-06 48.9 8.4 22 85-106 4-25 (420)
287 PRK06175 L-aspartate oxidase; 95.1 0.24 5.2E-06 48.1 11.1 52 137-188 128-189 (433)
288 TIGR03385 CoA_CoA_reduc CoA-di 95.0 0.088 1.9E-06 50.9 7.9 70 120-189 12-104 (427)
289 PRK08275 putative oxidoreducta 95.0 0.33 7.3E-06 48.7 12.2 49 140-188 140-200 (554)
290 PF06039 Mqo: Malate:quinone o 94.9 0.29 6.2E-06 47.2 10.6 70 144-213 188-271 (488)
291 PF02558 ApbA: Ketopantoate re 94.9 0.1 2.2E-06 42.5 6.8 77 86-189 1-80 (151)
292 KOG2852 Possible oxidoreductas 94.8 0.12 2.5E-06 46.6 7.2 40 84-131 11-50 (380)
293 PRK06718 precorrin-2 dehydroge 94.8 0.082 1.8E-06 45.7 6.2 74 83-189 10-83 (202)
294 KOG1298 Squalene monooxygenase 94.7 0.038 8.2E-07 51.5 4.2 31 85-129 47-77 (509)
295 PTZ00367 squalene epoxidase; P 94.6 0.12 2.7E-06 51.8 7.8 33 84-130 34-66 (567)
296 KOG1800 Ferredoxin/adrenodoxin 94.6 0.13 2.7E-06 48.1 7.1 87 85-189 22-121 (468)
297 PLN02927 antheraxanthin epoxid 94.6 0.066 1.4E-06 54.5 5.9 35 81-129 79-113 (668)
298 PRK15116 sulfur acceptor prote 94.5 0.041 8.8E-07 49.6 3.7 35 82-129 29-63 (268)
299 COG1206 Gid NAD(FAD)-utilizing 94.5 0.1 2.2E-06 47.8 6.2 31 85-129 5-35 (439)
300 COG0686 Ald Alanine dehydrogen 94.4 0.05 1.1E-06 49.3 4.2 135 84-249 169-317 (371)
301 PRK12409 D-amino acid dehydrog 94.4 0.049 1.1E-06 52.4 4.6 32 85-130 3-34 (410)
302 PRK13369 glycerol-3-phosphate 94.3 0.1 2.2E-06 51.8 6.4 34 85-132 8-41 (502)
303 PRK05562 precorrin-2 dehydroge 94.2 0.11 2.5E-06 45.3 5.9 73 83-188 25-97 (223)
304 PF13434 K_oxygenase: L-lysine 94.0 0.31 6.7E-06 45.7 8.8 92 85-189 4-160 (341)
305 TIGR03862 flavo_PP4765 unchara 93.9 0.39 8.5E-06 45.6 9.3 60 129-188 76-141 (376)
306 PRK11883 protoporphyrinogen ox 93.9 0.077 1.7E-06 51.5 4.8 33 85-129 2-34 (451)
307 COG3349 Uncharacterized conser 93.9 0.074 1.6E-06 51.6 4.4 34 85-132 2-35 (485)
308 PRK00711 D-amino acid dehydrog 93.7 0.081 1.8E-06 50.9 4.5 31 85-129 2-32 (416)
309 PRK12266 glpD glycerol-3-phosp 93.6 0.082 1.8E-06 52.5 4.5 33 85-131 8-40 (508)
310 PLN02268 probable polyamine ox 93.6 0.092 2E-06 50.9 4.7 31 85-129 2-32 (435)
311 PRK07233 hypothetical protein; 93.4 0.083 1.8E-06 50.9 4.1 31 85-129 1-31 (434)
312 COG0665 DadA Glycine/D-amino a 93.4 0.11 2.3E-06 49.3 4.7 33 84-130 5-37 (387)
313 PLN02464 glycerol-3-phosphate 93.4 0.13 2.8E-06 52.4 5.5 35 84-132 72-106 (627)
314 PRK07208 hypothetical protein; 93.3 0.1 2.2E-06 51.3 4.6 32 84-129 5-36 (479)
315 COG3380 Predicted NAD/FAD-depe 93.3 0.12 2.6E-06 46.2 4.3 31 85-129 3-33 (331)
316 PRK05708 2-dehydropantoate 2-r 93.2 0.37 8E-06 44.5 7.8 79 84-189 3-83 (305)
317 PF13241 NAD_binding_7: Putati 93.2 0.086 1.9E-06 40.2 3.0 33 83-129 7-39 (103)
318 PRK02705 murD UDP-N-acetylmura 93.2 0.28 6.1E-06 47.9 7.4 79 85-189 2-81 (459)
319 KOG1276 Protoporphyrinogen oxi 93.2 0.14 3E-06 48.6 4.8 37 83-131 11-48 (491)
320 COG1233 Phytoene dehydrogenase 93.1 0.13 2.7E-06 50.9 4.7 33 84-130 4-36 (487)
321 COG1232 HemY Protoporphyrinoge 93.1 0.14 3E-06 49.5 4.9 33 85-129 2-34 (444)
322 PRK06719 precorrin-2 dehydroge 93.1 0.15 3.3E-06 42.1 4.5 31 83-127 13-43 (157)
323 TIGR00562 proto_IX_ox protopor 92.9 0.12 2.7E-06 50.3 4.5 36 84-129 3-38 (462)
324 KOG4716 Thioredoxin reductase 92.9 1.7 3.6E-05 40.3 11.0 31 84-128 20-50 (503)
325 PRK08205 sdhA succinate dehydr 92.8 1.2 2.7E-05 45.0 11.5 51 139-189 142-207 (583)
326 PRK12416 protoporphyrinogen ox 92.7 0.15 3.2E-06 50.0 4.7 38 84-129 2-39 (463)
327 PRK07843 3-ketosteroid-delta-1 92.7 0.19 4.1E-06 50.5 5.4 91 85-189 162-271 (557)
328 PRK06249 2-dehydropantoate 2-r 92.5 0.8 1.7E-05 42.4 9.0 78 84-189 6-85 (313)
329 PF02737 3HCDH_N: 3-hydroxyacy 92.5 0.12 2.7E-06 43.7 3.3 31 85-129 1-31 (180)
330 PRK06854 adenylylsulfate reduc 92.4 0.18 3.9E-06 51.2 4.9 44 209-260 389-432 (608)
331 TIGR02485 CobZ_N-term precorri 92.4 1 2.2E-05 43.7 10.0 51 137-187 123-182 (432)
332 PF01488 Shikimate_DH: Shikima 92.4 0.36 7.9E-06 38.7 5.8 76 83-189 12-88 (135)
333 COG1893 ApbA Ketopantoate redu 92.4 0.27 5.9E-06 45.4 5.6 78 85-189 2-80 (307)
334 KOG2853 Possible oxidoreductas 92.4 2 4.3E-05 39.9 10.8 37 83-129 86-122 (509)
335 PLN02576 protoporphyrinogen ox 92.3 0.18 3.9E-06 49.8 4.6 32 84-129 13-45 (496)
336 PF00899 ThiF: ThiF family; I 92.1 0.28 6.1E-06 39.2 4.7 34 84-130 3-36 (135)
337 TIGR02734 crtI_fam phytoene de 92.0 0.19 4E-06 49.8 4.4 31 86-130 1-31 (502)
338 TIGR02733 desat_CrtD C-3',4' d 91.8 0.2 4.3E-06 49.5 4.4 31 85-129 3-33 (492)
339 TIGR00031 UDP-GALP_mutase UDP- 91.8 0.25 5.5E-06 46.9 4.9 31 85-129 3-33 (377)
340 PRK02472 murD UDP-N-acetylmura 91.7 0.48 1E-05 46.1 6.9 75 84-189 6-81 (447)
341 TIGR02731 phytoene_desat phyto 91.6 0.2 4.2E-06 48.9 4.0 31 85-129 1-31 (453)
342 PLN02529 lysine-specific histo 91.5 0.27 5.8E-06 50.8 4.9 34 82-129 159-192 (738)
343 PRK01710 murD UDP-N-acetylmura 91.4 0.66 1.4E-05 45.4 7.5 75 84-189 15-90 (458)
344 PRK12842 putative succinate de 91.3 0.26 5.7E-06 49.7 4.6 92 84-189 158-276 (574)
345 PRK12921 2-dehydropantoate 2-r 91.3 0.6 1.3E-05 42.8 6.7 78 85-189 2-81 (305)
346 PRK04308 murD UDP-N-acetylmura 91.0 0.8 1.7E-05 44.6 7.6 76 84-192 6-84 (445)
347 COG1004 Ugd Predicted UDP-gluc 91.0 0.39 8.5E-06 45.2 5.0 48 85-146 2-58 (414)
348 PF00890 FAD_binding_2: FAD bi 90.9 0.29 6.3E-06 47.1 4.4 30 86-129 2-31 (417)
349 TIGR01320 mal_quin_oxido malat 90.9 0.27 5.9E-06 48.5 4.2 32 85-128 2-33 (483)
350 COG0578 GlpA Glycerol-3-phosph 90.8 0.2 4.4E-06 49.4 3.2 35 84-132 13-47 (532)
351 PRK05257 malate:quinone oxidor 90.8 0.29 6.3E-06 48.4 4.3 33 85-129 7-39 (494)
352 PRK00421 murC UDP-N-acetylmura 90.7 0.68 1.5E-05 45.4 6.8 72 83-189 7-79 (461)
353 PF00732 GMC_oxred_N: GMC oxid 90.6 0.25 5.4E-06 45.1 3.5 35 85-132 2-36 (296)
354 KOG2665 Predicted FAD-dependen 90.6 1.6 3.4E-05 40.1 8.3 57 145-201 204-270 (453)
355 PRK08274 tricarballylate dehyd 90.3 0.34 7.3E-06 47.5 4.3 31 85-129 6-36 (466)
356 PTZ00383 malate:quinone oxidor 90.3 0.38 8.2E-06 47.6 4.6 34 84-129 46-79 (497)
357 TIGR02732 zeta_caro_desat caro 90.2 0.38 8.3E-06 47.3 4.5 31 85-129 1-31 (474)
358 PF01210 NAD_Gly3P_dh_N: NAD-d 90.1 0.46 9.9E-06 39.2 4.3 85 85-195 1-89 (157)
359 KOG0685 Flavin-containing amin 90.0 0.49 1.1E-05 45.6 4.8 37 82-131 20-57 (498)
360 COG0029 NadB Aspartate oxidase 90.0 1.7 3.6E-05 42.3 8.4 86 85-185 9-193 (518)
361 PLN02487 zeta-carotene desatur 89.7 0.42 9.1E-06 48.0 4.4 33 83-129 75-107 (569)
362 PRK09231 fumarate reductase fl 89.7 0.54 1.2E-05 47.5 5.3 57 202-260 358-415 (582)
363 PLN03000 amine oxidase 89.7 0.73 1.6E-05 48.3 6.2 24 83-106 184-207 (881)
364 PRK08275 putative oxidoreducta 89.6 0.44 9.4E-06 47.9 4.5 49 203-260 357-405 (554)
365 PLN02328 lysine-specific histo 89.6 0.5 1.1E-05 49.3 5.0 34 82-129 237-270 (808)
366 PF03721 UDPG_MGDP_dh_N: UDP-g 89.6 0.63 1.4E-05 39.5 4.9 75 85-187 2-87 (185)
367 PRK07819 3-hydroxybutyryl-CoA 89.5 0.39 8.4E-06 43.9 3.8 32 84-129 6-37 (286)
368 TIGR03197 MnmC_Cterm tRNA U-34 89.4 0.93 2E-05 43.1 6.4 57 136-193 134-195 (381)
369 COG2907 Predicted NAD/FAD-bind 89.2 0.43 9.3E-06 44.2 3.6 32 84-130 9-40 (447)
370 PRK00141 murD UDP-N-acetylmura 89.0 1.5 3.3E-05 43.1 7.7 71 84-189 16-87 (473)
371 TIGR02730 carot_isom carotene 88.9 0.48 1E-05 46.8 4.2 31 85-129 2-32 (493)
372 PRK00066 ldh L-lactate dehydro 88.8 0.72 1.6E-05 42.8 5.0 36 82-129 5-40 (315)
373 PRK13800 putative oxidoreducta 88.8 0.5 1.1E-05 50.3 4.4 50 202-260 361-410 (897)
374 PRK13339 malate:quinone oxidor 88.7 0.49 1.1E-05 46.7 4.1 49 150-198 198-257 (497)
375 TIGR02352 thiamin_ThiO glycine 88.7 1.3 2.9E-05 40.8 6.9 55 136-191 136-196 (337)
376 PRK07121 hypothetical protein; 88.7 0.53 1.2E-05 46.5 4.3 31 85-129 22-52 (492)
377 PRK08229 2-dehydropantoate 2-r 88.6 2.1 4.6E-05 39.9 8.1 78 85-188 4-85 (341)
378 PRK02106 choline dehydrogenase 88.3 0.53 1.1E-05 47.4 4.1 20 85-104 7-26 (560)
379 PRK03369 murD UDP-N-acetylmura 88.2 1.7 3.8E-05 42.9 7.6 75 83-192 12-87 (488)
380 PLN02676 polyamine oxidase 88.0 0.65 1.4E-05 45.9 4.4 24 83-106 26-49 (487)
381 PLN02612 phytoene desaturase 87.9 0.84 1.8E-05 46.0 5.2 34 82-129 92-125 (567)
382 COG2509 Uncharacterized FAD-de 87.8 0.51 1.1E-05 45.2 3.3 45 204-258 438-482 (486)
383 COG1231 Monoamine oxidase [Ami 87.7 0.84 1.8E-05 43.8 4.7 32 84-129 8-39 (450)
384 PRK07804 L-aspartate oxidase; 87.7 0.72 1.6E-05 46.2 4.6 55 202-258 357-412 (541)
385 TIGR02730 carot_isom carotene 87.6 1.9 4.1E-05 42.6 7.4 51 137-187 229-285 (493)
386 PRK06452 sdhA succinate dehydr 87.6 1.1 2.3E-05 45.3 5.7 58 202-260 346-404 (566)
387 TIGR02354 thiF_fam2 thiamine b 87.5 0.91 2E-05 39.1 4.5 34 83-129 21-54 (200)
388 PRK13977 myosin-cross-reactive 87.2 0.99 2.1E-05 45.1 5.1 37 84-130 23-59 (576)
389 PRK08071 L-aspartate oxidase; 87.1 0.89 1.9E-05 45.2 4.8 55 202-258 332-387 (510)
390 PF02254 TrkA_N: TrkA-N domain 87.1 2.9 6.2E-05 32.1 6.8 74 86-188 1-74 (116)
391 PRK12842 putative succinate de 87.1 0.81 1.7E-05 46.2 4.6 31 85-129 11-41 (574)
392 TIGR02437 FadB fatty oxidation 86.9 1.3 2.9E-05 45.8 6.1 35 81-129 311-345 (714)
393 TIGR00551 nadB L-aspartate oxi 86.9 1 2.3E-05 44.4 5.1 55 202-258 333-388 (488)
394 TIGR03736 PRTRC_ThiF PRTRC sys 86.8 1.4 2.9E-05 39.2 5.3 44 83-129 11-54 (244)
395 PRK11730 fadB multifunctional 86.6 1.5 3.3E-05 45.5 6.3 34 82-129 312-345 (715)
396 COG0562 Glf UDP-galactopyranos 86.6 1.1 2.4E-05 41.1 4.6 34 85-132 3-37 (374)
397 PRK00711 D-amino acid dehydrog 86.4 2.6 5.7E-05 40.4 7.6 59 137-196 201-265 (416)
398 TIGR01320 mal_quin_oxido malat 86.4 2.3 4.9E-05 42.0 7.2 63 136-198 177-250 (483)
399 TIGR01176 fum_red_Fp fumarate 86.4 1.3 2.8E-05 44.8 5.5 56 202-259 357-413 (580)
400 PLN02612 phytoene desaturase 86.3 2.4 5.3E-05 42.7 7.4 50 137-186 308-364 (567)
401 PRK10637 cysG siroheme synthas 86.2 1.5 3.2E-05 43.0 5.7 73 83-188 12-84 (457)
402 PRK09077 L-aspartate oxidase; 86.2 1.2 2.5E-05 44.7 5.1 56 202-259 353-409 (536)
403 PRK12837 3-ketosteroid-delta-1 86.2 0.8 1.7E-05 45.5 3.9 30 85-129 9-38 (513)
404 TIGR02356 adenyl_thiF thiazole 86.1 1.2 2.7E-05 38.3 4.6 33 84-129 22-54 (202)
405 PRK08293 3-hydroxybutyryl-CoA 86.0 0.96 2.1E-05 41.3 4.1 32 84-129 4-35 (287)
406 PRK04690 murD UDP-N-acetylmura 85.9 2.7 5.9E-05 41.3 7.5 77 83-192 8-86 (468)
407 cd00757 ThiF_MoeB_HesA_family 85.9 1.3 2.9E-05 38.9 4.8 33 84-129 22-54 (228)
408 cd01483 E1_enzyme_family Super 85.8 1.4 3.1E-05 35.5 4.6 32 85-129 1-32 (143)
409 PLN02568 polyamine oxidase 85.7 1.2 2.6E-05 44.6 4.9 37 84-129 6-42 (539)
410 cd01492 Aos1_SUMO Ubiquitin ac 85.7 1.8 4E-05 37.1 5.5 34 84-130 22-55 (197)
411 PTZ00383 malate:quinone oxidor 85.7 2.7 5.8E-05 41.6 7.3 61 137-198 211-283 (497)
412 cd05211 NAD_bind_Glu_Leu_Phe_V 85.6 3.3 7.2E-05 36.1 7.1 85 82-187 22-108 (217)
413 PRK07057 sdhA succinate dehydr 85.2 1 2.2E-05 45.7 4.1 31 85-129 14-44 (591)
414 PRK07803 sdhA succinate dehydr 85.1 0.96 2.1E-05 46.2 3.9 31 85-129 10-40 (626)
415 TIGR01811 sdhA_Bsu succinate d 85.0 0.82 1.8E-05 46.4 3.4 30 86-129 1-30 (603)
416 PRK06263 sdhA succinate dehydr 85.0 1.5 3.3E-05 43.9 5.3 56 202-260 348-404 (543)
417 PRK09078 sdhA succinate dehydr 85.0 1 2.2E-05 45.8 4.0 31 85-129 14-44 (598)
418 PRK12835 3-ketosteroid-delta-1 84.9 1.1 2.4E-05 45.3 4.3 32 85-130 13-44 (584)
419 PTZ00363 rab-GDP dissociation 84.8 1.1 2.5E-05 43.5 4.2 34 85-132 6-39 (443)
420 PRK07066 3-hydroxybutyryl-CoA 84.8 1 2.2E-05 41.8 3.7 32 84-129 8-39 (321)
421 TIGR01812 sdhA_frdA_Gneg succi 84.8 1.5 3.3E-05 44.1 5.2 57 202-260 342-403 (566)
422 PRK12475 thiamine/molybdopteri 84.8 1.6 3.4E-05 41.0 4.9 35 83-130 24-58 (338)
423 PRK08626 fumarate reductase fl 84.8 1.8 3.9E-05 44.5 5.8 58 202-260 372-430 (657)
424 cd01490 Ube1_repeat2 Ubiquitin 84.7 1.3 2.8E-05 42.8 4.4 38 85-130 1-38 (435)
425 cd01485 E1-1_like Ubiquitin ac 84.7 2.3 4.9E-05 36.6 5.6 33 84-129 20-52 (198)
426 PRK05329 anaerobic glycerol-3- 84.6 1.2 2.5E-05 43.2 4.1 31 85-129 4-34 (422)
427 PRK12834 putative FAD-binding 84.6 1.2 2.6E-05 44.7 4.3 31 85-129 6-36 (549)
428 COG0771 MurD UDP-N-acetylmuram 84.5 3.8 8.2E-05 39.8 7.5 75 83-189 7-82 (448)
429 PRK08641 sdhA succinate dehydr 84.4 1 2.3E-05 45.6 3.9 31 85-129 5-35 (589)
430 TIGR02061 aprA adenosine phosp 84.4 1.4 3E-05 44.8 4.7 44 209-260 400-443 (614)
431 PLN02602 lactate dehydrogenase 84.2 1.8 3.9E-05 40.7 5.1 34 84-129 38-71 (350)
432 TIGR02734 crtI_fam phytoene de 84.1 3.5 7.5E-05 40.8 7.4 51 137-187 219-275 (502)
433 PRK04148 hypothetical protein; 84.0 1.3 2.9E-05 35.3 3.5 31 84-129 18-48 (134)
434 PRK06452 sdhA succinate dehydr 83.9 1.2 2.5E-05 45.0 3.9 31 85-129 7-37 (566)
435 cd01489 Uba2_SUMO Ubiquitin ac 83.9 1.6 3.6E-05 40.2 4.6 32 85-129 1-32 (312)
436 PRK07688 thiamine/molybdopteri 83.8 1.9 4.1E-05 40.4 5.0 34 83-129 24-57 (339)
437 COG0169 AroE Shikimate 5-dehyd 83.8 6 0.00013 36.0 8.1 75 83-187 126-201 (283)
438 PRK08401 L-aspartate oxidase; 83.8 1.6 3.5E-05 42.8 4.8 54 202-257 310-364 (466)
439 COG0569 TrkA K+ transport syst 83.7 1.5 3.3E-05 38.5 4.1 31 85-129 2-32 (225)
440 PRK08958 sdhA succinate dehydr 83.7 1.5 3.2E-05 44.5 4.6 31 85-129 9-39 (588)
441 PRK12409 D-amino acid dehydrog 83.7 3.9 8.4E-05 39.2 7.4 60 137-196 197-266 (410)
442 PTZ00139 Succinate dehydrogena 83.6 1.5 3.2E-05 44.7 4.6 31 85-129 31-61 (617)
443 PRK07512 L-aspartate oxidase; 83.6 1.5 3.3E-05 43.5 4.6 56 202-259 341-397 (513)
444 PRK08328 hypothetical protein; 83.6 2.1 4.5E-05 37.8 5.0 35 82-129 26-60 (231)
445 PRK12844 3-ketosteroid-delta-1 83.5 1.4 3.1E-05 44.3 4.4 31 85-129 8-38 (557)
446 PRK06069 sdhA succinate dehydr 83.5 1.8 4E-05 43.7 5.2 58 202-260 352-415 (577)
447 PRK05690 molybdopterin biosynt 83.4 1.8 3.9E-05 38.6 4.5 35 82-129 31-65 (245)
448 TIGR01082 murC UDP-N-acetylmur 83.3 2.9 6.3E-05 40.7 6.3 69 85-189 1-71 (448)
449 PRK07573 sdhA succinate dehydr 83.1 1.3 2.9E-05 45.2 4.1 30 85-128 37-66 (640)
450 PLN00128 Succinate dehydrogena 83.1 1.6 3.5E-05 44.6 4.6 31 85-129 52-82 (635)
451 TIGR02355 moeB molybdopterin s 83.0 2.3 4.9E-05 37.8 4.9 34 84-130 25-58 (240)
452 KOG0042 Glycerol-3-phosphate d 83.0 1 2.2E-05 44.2 2.8 36 84-133 68-103 (680)
453 TIGR01810 betA choline dehydro 82.9 1.2 2.7E-05 44.4 3.7 21 86-106 2-22 (532)
454 COG3075 GlpB Anaerobic glycero 82.9 2.3 5.1E-05 39.2 4.9 121 136-259 257-417 (421)
455 TIGR02061 aprA adenosine phosp 82.8 1.5 3.1E-05 44.7 4.1 30 86-129 2-35 (614)
456 TIGR02441 fa_ox_alpha_mit fatt 82.8 2.4 5.1E-05 44.2 5.7 35 81-129 333-367 (737)
457 COG0421 SpeE Spermidine syntha 82.8 1.9 4.1E-05 39.3 4.4 79 84-184 78-157 (282)
458 cd01484 E1-2_like Ubiquitin ac 82.7 1.9 4.1E-05 38.1 4.3 32 85-129 1-32 (234)
459 PRK07843 3-ketosteroid-delta-1 82.7 1.4 3.1E-05 44.2 4.0 31 85-129 9-39 (557)
460 PRK08626 fumarate reductase fl 82.7 1.4 2.9E-05 45.3 3.9 31 85-129 7-37 (657)
461 PF01134 GIDA: Glucose inhibit 82.6 2.4 5.2E-05 40.4 5.2 45 206-260 345-389 (392)
462 PRK11154 fadJ multifunctional 82.6 3.1 6.6E-05 43.2 6.4 35 81-129 307-342 (708)
463 PRK08644 thiamine biosynthesis 82.5 2.4 5.3E-05 36.8 4.9 35 82-129 27-61 (212)
464 PRK07803 sdhA succinate dehydr 82.4 2.1 4.6E-05 43.7 5.1 57 202-260 391-448 (626)
465 KOG2844 Dimethylglycine dehydr 82.3 14 0.0003 37.6 10.3 52 139-191 189-246 (856)
466 TIGR01759 MalateDH-SF1 malate 82.2 3.7 8E-05 38.2 6.2 39 84-129 4-43 (323)
467 TIGR02462 pyranose_ox pyranose 81.9 1.8 3.8E-05 43.3 4.2 31 85-129 2-32 (544)
468 TIGR00561 pntA NAD(P) transhyd 81.8 12 0.00027 37.0 9.9 32 84-129 165-196 (511)
469 PLN02785 Protein HOTHEAD 81.7 1.5 3.3E-05 44.3 3.8 21 84-104 56-76 (587)
470 TIGR02440 FadJ fatty oxidation 81.7 3.6 7.8E-05 42.6 6.5 35 81-129 302-337 (699)
471 PRK03803 murD UDP-N-acetylmura 81.7 4.2 9.2E-05 39.6 6.8 71 84-189 7-81 (448)
472 cd01487 E1_ThiF_like E1_ThiF_l 81.7 2.1 4.5E-05 36.0 4.1 32 85-129 1-32 (174)
473 cd01488 Uba3_RUB Ubiquitin act 81.6 2 4.4E-05 39.2 4.2 32 85-129 1-32 (291)
474 COG2303 BetA Choline dehydroge 81.6 1.4 2.9E-05 44.2 3.4 31 85-129 9-39 (542)
475 PRK05675 sdhA succinate dehydr 81.5 3.1 6.7E-05 42.0 5.9 56 203-259 340-405 (570)
476 COG1648 CysG Siroheme synthase 81.4 2.5 5.3E-05 36.7 4.5 73 83-188 12-84 (210)
477 TIGR01811 sdhA_Bsu succinate d 81.3 2.6 5.7E-05 42.8 5.3 55 202-259 370-425 (603)
478 COG3075 GlpB Anaerobic glycero 81.2 2.1 4.4E-05 39.6 4.0 22 85-106 4-25 (421)
479 PRK06153 hypothetical protein; 81.2 4.7 0.0001 38.3 6.5 159 83-261 176-364 (393)
480 PRK09260 3-hydroxybutyryl-CoA 81.1 2.1 4.5E-05 39.1 4.1 32 84-129 2-33 (288)
481 PRK13339 malate:quinone oxidor 80.7 16 0.00035 36.2 10.4 10 23-32 6-15 (497)
482 PRK05945 sdhA succinate dehydr 80.4 3.2 6.9E-05 42.0 5.6 58 202-260 351-414 (575)
483 cd00755 YgdL_like Family of ac 80.0 2.8 6.1E-05 37.0 4.4 33 84-129 12-44 (231)
484 PRK06035 3-hydroxyacyl-CoA deh 79.9 2.6 5.7E-05 38.5 4.4 32 84-129 4-35 (291)
485 PRK06175 L-aspartate oxidase; 79.9 2.9 6.4E-05 40.6 5.0 54 202-259 331-387 (433)
486 COG3573 Predicted oxidoreducta 79.9 2.4 5.1E-05 39.3 3.9 31 85-129 7-37 (552)
487 PRK08641 sdhA succinate dehydr 79.9 3.2 7E-05 42.1 5.4 56 202-260 355-411 (589)
488 PRK09078 sdhA succinate dehydr 79.8 3.5 7.5E-05 41.9 5.6 56 203-259 363-428 (598)
489 PF02826 2-Hacid_dh_C: D-isome 79.8 3.8 8.1E-05 34.5 5.0 34 82-129 35-68 (178)
490 PRK00536 speE spermidine synth 79.7 3.6 7.7E-05 37.0 5.0 31 82-128 72-102 (262)
491 TIGR01381 E1_like_apg7 E1-like 79.6 5.2 0.00011 40.5 6.5 48 68-129 324-371 (664)
492 cd01486 Apg7 Apg7 is an E1-lik 79.6 2.7 5.8E-05 38.5 4.2 32 85-129 1-32 (307)
493 PRK08205 sdhA succinate dehydr 79.6 3.3 7.1E-05 41.9 5.4 58 202-260 356-419 (583)
494 PRK06129 3-hydroxyacyl-CoA deh 79.5 2.5 5.5E-05 39.0 4.2 31 85-129 4-34 (308)
495 PRK05257 malate:quinone oxidor 79.4 6.3 0.00014 39.0 7.1 62 137-198 183-256 (494)
496 PLN00128 Succinate dehydrogena 79.2 3.8 8.2E-05 41.9 5.7 56 203-259 401-466 (635)
497 PF13478 XdhC_C: XdhC Rossmann 79.2 3.9 8.4E-05 32.9 4.6 34 86-133 1-35 (136)
498 PRK09231 fumarate reductase fl 79.1 2.8 6.1E-05 42.4 4.7 33 85-129 6-38 (582)
499 PRK06263 sdhA succinate dehydr 79.0 2.1 4.4E-05 43.0 3.7 30 85-129 9-38 (543)
500 PLN02815 L-aspartate oxidase 78.8 3.6 7.8E-05 41.7 5.3 55 202-258 377-432 (594)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=1.1e-64 Score=458.95 Aligned_cols=325 Identities=52% Similarity=0.862 Sum_probs=295.3
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...+.|||||+|+|+.++.++|||+.||+++++.++||.++|.++.+++|.++.|+..++++++.+++|||||||+|+|+
T Consensus 154 e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEF 233 (491)
T KOG2495|consen 154 EFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEF 233 (491)
T ss_pred eeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceee
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCeEEEcCC----
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDG---- 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g---- 172 (352)
|+||+++..+++.+-||++.++.+|||+++. .+|+.|+..+.+++++.+.+.+|++.++ .|+.|+++.++.+++
T Consensus 234 AaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~ 313 (491)
T KOG2495|consen 234 AAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEI 313 (491)
T ss_pred hHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCce
Confidence 9999999999999999999999999999998 6999999999999999999999999999 799999998887655
Q ss_pred cEEecceEEEecCCCcchhhhhcCCCCCCCC--ccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 173 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~~~~~~~l~~~~~G--~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
++|||.+++|+||..|.++.+.+....++.| ++.||++||+++.+||||+|||+.. ..++++||+|.|||.+
T Consensus 314 ~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~------~~~~~tAQVA~QqG~y 387 (491)
T KOG2495|consen 314 EEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ------RGLKPTAQVAEQQGAY 387 (491)
T ss_pred eeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccc------ccCccHHHHHHHHHHH
Confidence 6899999999999999999998887777777 8999999999999999999999943 2357799999999999
Q ss_pred HHHHHHHHhhhCCCCCCCc-cc----CCCCCCceeeccceEEEecCcceeeeccccccCCCeEeecHHHHHHHHHHHHHh
Q 018671 251 LFSLLNRIGKAGGGRANSA-KD----MELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTR 325 (352)
Q Consensus 251 ~a~~i~~~~~~~~g~~~~~-~~----~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~~~~~~~~~~l~~ 325 (352)
+|++++.+.+..+....+. .. ....+||+|+++|.+++||+.+|+++++.. ..+...|..+|++|+++||.+
T Consensus 388 LAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~~g---~~~~~~G~~s~~lWrS~Yls~ 464 (491)
T KOG2495|consen 388 LAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLPVG---KMWVSAGGSSFWLWRSAYLSK 464 (491)
T ss_pred HHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCccC---CeeeeccchhhHHHHHHHHHH
Confidence 9999999887443311111 11 111289999999999999999999999732 338999999999999999999
Q ss_pred cCCcchhHHhHHHHHHHhccCCCCCCC
Q 018671 326 VVSWRNRFYVAVNWATTFVFGRDISRI 352 (352)
Q Consensus 326 ~~~~~~~~~~~~~w~~~~~~~~~~~~~ 352 (352)
..+||+|+.|++||+..++||||++++
T Consensus 465 ~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 465 LVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred hhhhhhheeeeeheeeeEEeccccccC
Confidence 999999999999999999999999985
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-62 Score=457.26 Aligned_cols=321 Identities=37% Similarity=0.633 Sum_probs=290.9
Q ss_pred EEeeccccccccCCCe-eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 4 HCETVTDELRTLEPWK-FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
+++++|.+.+.++.+. .+++||+||||+||.++++++||+.|+++++++++||.++++++...|+.++....+ +.
T Consensus 79 ~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~----~~ 154 (405)
T COG1252 79 EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD----RA 154 (405)
T ss_pred EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc----cc
Confidence 5777888877766555 789999999999999999999999999999999999999999999899988754311 45
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVK 160 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~ 160 (352)
..+|+|||||++|+|+|++|+++..+.+.+ |...+.+.+|+||+++ ++||.+++++++++++.|+++||+++++ .|+
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt 233 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT 233 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceE
Confidence 579999999999999999999998665544 5544447899999998 8999999999999999999999999999 899
Q ss_pred EEECCeEEEcCCcE-EecceEEEecCCCcchhhhh-cCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCC
Q 018671 161 DVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP 238 (352)
Q Consensus 161 ~v~~~~v~~~~g~~-i~~D~vi~a~G~~~~~~~~~-~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~ 238 (352)
+|+++.|++++|++ |++|++|||+|.+++++.++ ++++.|+.|++.||++||++++|||||+|||+.+.++ +|.|
T Consensus 234 ~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P 310 (405)
T COG1252 234 EVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVP 310 (405)
T ss_pred EECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---CCCC
Confidence 99999999999984 99999999999999999999 4888888999999999999999999999999998765 6789
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhCCCCCCCcccCCCCCCceeeccceEEEecCcceeeeccccccCCCeEeecHHHHHHH
Q 018671 239 ALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVW 318 (352)
Q Consensus 239 ~~~~~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~~~~~~ 318 (352)
++||.|+|||+++|+||.+.+. |+ ++ +||+|++.|+|+++|.+.||+.+ .++.+.|+++|++|
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~l~---g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~~l~G~~a~~~k 373 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKARLK---GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGVKLKGFLAWLLK 373 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHHhc---CC-------CC-CCCcccceEEEEEccCCceeEEe------cceeeccHHHHHHH
Confidence 9999999999999999999876 32 34 99999999999999999999987 45899999999999
Q ss_pred HHHHHHhcCCcchhHHhHHHHHHHhccCCCC
Q 018671 319 RSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 349 (352)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~ 349 (352)
+..|+++++.+++++.+..+|.+.+++.++.
T Consensus 374 ~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 374 RAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred HHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 9999999999999999999999999999875
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2e-56 Score=430.24 Aligned_cols=315 Identities=50% Similarity=0.844 Sum_probs=283.4
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.+++||+||||||+.++.+++||..++++++++++++.++++++.++++.+..+..++++.++.++|+|||||++|+|
T Consensus 108 ~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE 187 (424)
T PTZ00318 108 NTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVE 187 (424)
T ss_pred CceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHH
Confidence 55689999999999999999999999899999999999999999998877776554444555566679999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCeEEEcCCcEE
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEV 175 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i 175 (352)
+|.+|+++.+....+.|+.++++.+|+|++++ ++++.+++.+.+.+++.|+++||+++++ +|++++++.|++++|+++
T Consensus 188 ~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i 267 (424)
T PTZ00318 188 FAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVI 267 (424)
T ss_pred HHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEE
Confidence 99999998876666677777777999999997 7889999999999999999999999998 899999999999999999
Q ss_pred ecceEEEecCCCcchhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHH
Q 018671 176 PYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 255 (352)
Q Consensus 176 ~~D~vi~a~G~~~~~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i 255 (352)
++|++||++|.+|+++++.++++.+++|+|.||++||++++|||||+|||+.++. .+.|++++.|++||+++|+||
T Consensus 268 ~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~----~~~~~~~~~A~~qg~~~A~ni 343 (424)
T PTZ00318 268 PTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE----RPLPTLAQVASQQGVYLAKEF 343 (424)
T ss_pred EccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCC----CCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999998888999888889999999999889999999999998643 346889999999999999999
Q ss_pred HHHhhhCCCCCCCcccCCCCCCceeeccceEEEecCcceeeeccccccCCCeEeecHHHHHHHHHHHHHhcCCcchhHHh
Q 018671 256 NRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYV 335 (352)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~~ 335 (352)
.+.+. |+ + ++ +||.+...|.+++||.++|++++ .++.+.|+++|++|+.+|+.++++|++++++
T Consensus 344 ~~~l~---g~-----~-~~-~~~~~~~~g~~~~lG~~~av~~~------~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~ 407 (424)
T PTZ00318 344 NNELK---GK-----P-MS-KPFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFKALLFWRSAYLTILGSWRSKLYV 407 (424)
T ss_pred HHHhc---CC-----C-CC-CCCeecCCceEEEecCCceEEEc------CCceEecHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 98875 22 1 23 89999999999999999999987 5689999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCC
Q 018671 336 AVNWATTFVFGRDISRI 352 (352)
Q Consensus 336 ~~~w~~~~~~~~~~~~~ 352 (352)
+++|++.++|+|++.|+
T Consensus 408 ~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 408 LVNWAGTAIFGRDITRF 424 (424)
T ss_pred HHHHHHHHhcCCccccC
Confidence 99999999999999874
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.9e-41 Score=318.55 Aligned_cols=285 Identities=24% Similarity=0.320 Sum_probs=234.2
Q ss_pred Eeeccccccc-cCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccC
Q 018671 5 CETVTDELRT-LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 83 (352)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (352)
+..++...+. .+.++.+++||+||||||+.|+.|++||..++++.+++++++.+.++++.+.++.. ...
T Consensus 76 v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 145 (364)
T TIGR03169 76 ATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP----------PGT 145 (364)
T ss_pred EEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC----------CCC
Confidence 3445544443 44556689999999999999999999998889999999999998877765433211 123
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++|+|||||++|+|+|.+|++..++. ....+|+++....+++.+++.+.+.+.+.|++.||+++++ +|+++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~--------g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 217 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKR--------GLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRG 217 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhc--------CCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEE
Confidence 59999999999999999998764210 1125899995557888889999999999999999999999 89999
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcchhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchH
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 242 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~ 242 (352)
+++.+.+++|+++++|.+|||+|.+|++++..++++.+++|++.||+++|++++|||||+|||+.++. .+.|++++
T Consensus 218 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~----~~~~~~~~ 293 (364)
T TIGR03169 218 PDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD----APRPKAGV 293 (364)
T ss_pred cCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC----CCCCCchH
Confidence 98899999999999999999999999988888888888889999999999889999999999997643 24578899
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCcccCCCCCCcee-eccceEEEecCcceeeeccccccCCCeEeecHHHHHHHHHH
Q 018671 243 VAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVY-RHLGSMATIGRYKALVDLRQNKESKGLSLAGFLSWLVWRSA 321 (352)
Q Consensus 243 ~A~~qg~~~a~~i~~~~~~~~g~~~~~~~~~~~~~f~~-~~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~~~~~~~~~ 321 (352)
.|++||+++|+||.+.+. |+ ++ ++|++ ...++++++|.++|+++. .++.+.|+++|++|..+
T Consensus 294 ~A~~~g~~~a~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~~~~~~~k~~~ 356 (364)
T TIGR03169 294 YAVRQAPILAANLRASLR---GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPGRWLWRLKDWI 356 (364)
T ss_pred HHHHhHHHHHHHHHHHhc---CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecCccHHHHHHHH
Confidence 999999999999998775 32 22 66764 467899999999999875 46899999999999988
Q ss_pred HHHhcCC
Q 018671 322 YLTRVVS 328 (352)
Q Consensus 322 ~l~~~~~ 328 (352)
...++..
T Consensus 357 ~~~~~~~ 363 (364)
T TIGR03169 357 DRRFMRR 363 (364)
T ss_pred hHHHHhc
Confidence 7766543
No 5
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.3e-32 Score=258.77 Aligned_cols=217 Identities=22% Similarity=0.291 Sum_probs=178.3
Q ss_pred eccccccc-cCCCeeEeeCCEEEEcCCCCCCCCCCCCc-cccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCC
Q 018671 7 TVTDELRT-LEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 84 (352)
Q Consensus 7 ~~~~~~~~-~~~~~~~i~yD~LViAtGs~~~~~~ipG~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
.++...+. ...++.++.||+||||||+.|+.+++++. .++++.+++++++.++++.+. ..+
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~-----------------~~~ 145 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ-----------------PER 145 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh-----------------cCC
Confidence 34444333 44566789999999999999988777664 467888899999988877642 235
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CcHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-IVKD 161 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 161 (352)
+++|||+|++|+|+|..|++++ .+|+++++. .+++. +++...+.+.+.+++.||+++++ +|++
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 8999999999999999998876 899999987 67654 68888899999999999999998 8999
Q ss_pred EECC---eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCC
Q 018671 162 VDSQ---KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 237 (352)
Q Consensus 162 v~~~---~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~ 237 (352)
++.+ .+.+.+|+++++|.+|+++|.+|+. +.++++++.+ +.|.||+++|+ +.|||||+|||+..+++.|....
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~ 288 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHR 288 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEE
Confidence 8753 3567889999999999999999995 6777787653 56999999998 89999999999987665443345
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 018671 238 PALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 238 ~~~~~~A~~qg~~~a~~i~~ 257 (352)
+.+++.|.+||+++|+||..
T Consensus 289 ~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 289 CESWENANNQAQIAAAAMLG 308 (396)
T ss_pred ECcHHHHHHHHHHHHHHhcC
Confidence 67899999999999999963
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5e-32 Score=261.92 Aligned_cols=204 Identities=20% Similarity=0.322 Sum_probs=175.6
Q ss_pred EeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHHH
Q 018671 21 KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 100 (352)
Q Consensus 21 ~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~ 100 (352)
++.||+||||||+.|+.|++++ ++++++++++++..+++.+.. ...++++|||||++|+|+|.
T Consensus 103 ~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~---------------~~~~~vvViGgG~ig~E~A~ 165 (438)
T PRK13512 103 EESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA---------------NQVDKALVVGAGYISLEVLE 165 (438)
T ss_pred eeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh---------------cCCCEEEEECCCHHHHHHHH
Confidence 5799999999999998877654 567788899999888776521 12259999999999999999
Q ss_pred HHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCeEEEcCCcEEecc
Q 018671 101 ELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYG 178 (352)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~D 178 (352)
.|++++ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|++++...+++++|+++++|
T Consensus 166 ~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D 231 (438)
T PRK13512 166 NLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYD 231 (438)
T ss_pred HHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeC
Confidence 998876 899999987 6888899999999999999999999999 899999888999889999999
Q ss_pred eEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccC-CCCcCCCCchHHHHHHHHHHHHHHH
Q 018671 179 LLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVLPALAQVAERQGKYLFSLLN 256 (352)
Q Consensus 179 ~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~-~~~~~~~~~~~~A~~qg~~~a~~i~ 256 (352)
.++||+|.+|+ +++++.+++++++|++.||+++|+ ++|+|||+|||+..... .+.+..++.++.|.+||+++|+||.
T Consensus 232 ~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 232 MIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred EEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 99999999998 488888888888899999999998 89999999999964321 2222346788899999999999995
No 7
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.98 E-value=5.3e-31 Score=254.46 Aligned_cols=208 Identities=23% Similarity=0.368 Sum_probs=176.5
Q ss_pred eeEee--CCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 19 KFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 19 ~~~i~--yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
+.++. ||+||||||++|+.|++||++ ++++..+++.++.+++..+.. ...++|+|||||++|
T Consensus 85 ~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~~~vvViGgG~~g 149 (427)
T TIGR03385 85 NETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKVENVVIIGGGYIG 149 (427)
T ss_pred CCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCCCeEEEECCCHHH
Confidence 34677 999999999999999999985 567788899988887776520 123599999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC-CCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCe--EEEc
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK--LILN 170 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~--v~~~ 170 (352)
+|+|..|++.+ .+|+++++. .+ .+.+++++.+.+.+.|+++||+++.+ +|++++++. +.+.
T Consensus 150 ~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~ 215 (427)
T TIGR03385 150 IEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFT 215 (427)
T ss_pred HHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEc
Confidence 99999998876 789999987 55 46788999999999999999999998 899998754 3677
Q ss_pred CCcEEecceEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCC-CCcCCCCchHHHHHHH
Q 018671 171 DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-GKTVLPALAQVAERQG 248 (352)
Q Consensus 171 ~g~~i~~D~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~-~~~~~~~~~~~A~~qg 248 (352)
+|+++++|.+|+++|.+|+ +++++++++.+++|+|.||+++|+ +.|+|||+|||+..+.+. +.+..+++++.|.+||
T Consensus 216 ~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 294 (427)
T TIGR03385 216 SGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294 (427)
T ss_pred CCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHH
Confidence 8889999999999999999 588888998888899999999998 899999999999865432 2233466899999999
Q ss_pred HHHHHHHH
Q 018671 249 KYLFSLLN 256 (352)
Q Consensus 249 ~~~a~~i~ 256 (352)
+++|+||.
T Consensus 295 ~~~a~ni~ 302 (427)
T TIGR03385 295 RIAGENIA 302 (427)
T ss_pred HHHHHHhc
Confidence 99999995
No 8
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.98 E-value=7e-31 Score=249.56 Aligned_cols=213 Identities=24% Similarity=0.358 Sum_probs=175.9
Q ss_pred EeeccccccccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCC
Q 018671 5 CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+..++...+.+..++.++.||+||||||+.|..|++||... .+.++++.++..++..+ ...+
T Consensus 81 V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~-----------------~~~~ 142 (377)
T PRK04965 81 VTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL-----------------RDAQ 142 (377)
T ss_pred EEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh-----------------hcCC
Confidence 44555555566667778999999999999999999999744 67788888887766543 1235
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC-CcHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSKSGVRLVRG-IVKD 161 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 161 (352)
+|+|||||++|+|+|..|.+.+ .+|+++++. .+++. +++.+.+.+.+.|++.||+++.+ +|++
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 8999999999999999998766 899999987 56654 58889999999999999999998 7999
Q ss_pred EECC----eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcC
Q 018671 162 VDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 236 (352)
Q Consensus 162 v~~~----~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~ 236 (352)
++.+ .+.+++|+++++|.+|+|+|.+|+. +.+.++++.+ +| +.||++||+ +.|||||+|||+.+.. ..
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~----~~ 281 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQT-SAPDIYALGDCAEING----QV 281 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCccc-CCCCEEEeeecEeECC----ce
Confidence 8764 3677899999999999999999995 7788888775 35 999999998 8999999999998632 12
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 018671 237 LPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 237 ~~~~~~~A~~qg~~~a~~i~~ 257 (352)
.+.++.|.+||+++|+||..
T Consensus 282 -~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 282 -LPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred -eehHHHHHHHHHHHHHHhcC
Confidence 23567799999999999953
No 9
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.98 E-value=5e-31 Score=270.33 Aligned_cols=216 Identities=22% Similarity=0.356 Sum_probs=182.2
Q ss_pred Eeecccccccc-CCCeeEeeCCEEEEcCCCCCCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 5 CETVTDELRTL-EPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~i~yD~LViAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
+..++...+++ +.++.+++||+||||||+.|..|++||... +++.+++++++.++++.+. .
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~-----------------~ 144 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACAR-----------------R 144 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh-----------------c
Confidence 34455554543 345668999999999999999999999853 5678899999988876541 2
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCcHHHHHHHHHHHHhCCCEEEeC-ce
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IV 159 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~V 159 (352)
.++++|||||++|+|+|..|++++ .+|++++.. .+++ .++++..+.+.+.|+++||+++++ .+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v 210 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNT 210 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeE
Confidence 358999999999999999999887 899999987 5676 689999999999999999999999 79
Q ss_pred EEEECC------eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCC
Q 018671 160 KDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 232 (352)
Q Consensus 160 ~~v~~~------~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~ 232 (352)
+++.++ .+.++||+++++|+||+++|.+|+. ++++++++++++|+|.||+++|+ +.|+|||+|||+...+
T Consensus 211 ~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~-- 287 (847)
T PRK14989 211 LEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDPDIYAIGECASWNN-- 287 (847)
T ss_pred EEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCCCEEEeecceeEcC--
Confidence 998642 4678899999999999999999996 77788999888999999999998 8999999999997532
Q ss_pred CCcCCCCchHHHHHHHHHHHHHHHH
Q 018671 233 GKTVLPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 233 ~~~~~~~~~~~A~~qg~~~a~~i~~ 257 (352)
.....+..|.+||+++|.||..
T Consensus 288 ---~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 288 ---RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred ---cccccHHHHHHHHHHHHHHhcC
Confidence 2245778999999999999853
No 10
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=1.1e-30 Score=253.52 Aligned_cols=209 Identities=26% Similarity=0.396 Sum_probs=174.2
Q ss_pred eeEee--CCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 19 KFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 19 ~~~i~--yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
+.++. ||+||||||++|+.|++||+. ++++++++++++.++++.+.+ ...++|+|||||++|
T Consensus 97 ~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---------------~~~~~vvVvGgG~~g 161 (444)
T PRK09564 97 GSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD---------------EEIKNIVIIGAGFIG 161 (444)
T ss_pred CCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCCCEEEEECCCHHH
Confidence 44555 999999999999999999984 577788889888888776521 123599999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCe---EEE
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK---LIL 169 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~---v~~ 169 (352)
+|+|.++.+.+ .+|+++++. ++++ .+++++.+.+.+.|++.||+++.+ +|++++++. ...
T Consensus 162 ~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~ 227 (444)
T PRK09564 162 LEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVV 227 (444)
T ss_pred HHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEE
Confidence 99999998766 789999987 6776 589999999999999999999998 899987542 223
Q ss_pred cCCcEEecceEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCC-CCcCCCCchHHHHHH
Q 018671 170 NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST-GKTVLPALAQVAERQ 247 (352)
Q Consensus 170 ~~g~~i~~D~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~-~~~~~~~~~~~A~~q 247 (352)
.++.++++|.+++|+|..|+ +++++++++.+++|+|.||+++|+ ++|||||+|||+..+.+. +....+++++.|.+|
T Consensus 228 ~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q 306 (444)
T PRK09564 228 TDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKL 306 (444)
T ss_pred eCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence 35557999999999999998 588888988888899999999998 899999999999865432 233457899999999
Q ss_pred HHHHHHHHHH
Q 018671 248 GKYLFSLLNR 257 (352)
Q Consensus 248 g~~~a~~i~~ 257 (352)
|+++|+||..
T Consensus 307 g~~~a~ni~g 316 (444)
T PRK09564 307 GRMVGENLAG 316 (444)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 11
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.1e-29 Score=260.54 Aligned_cols=214 Identities=20% Similarity=0.342 Sum_probs=177.8
Q ss_pred Eeecccccc-ccCCCeeEeeCCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 5 CETVTDELR-TLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
+..++...+ +.+.++.++.||+||||||+.|+.|++||.+ ++++.+++++++.++++.+. .
T Consensus 77 V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~-----------------~ 139 (785)
T TIGR02374 77 VIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ-----------------R 139 (785)
T ss_pred EEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-----------------c
Confidence 334444444 3445566899999999999999999999984 46788899999988876541 2
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCcHHHHHHHHHHHHhCCCEEEeC-ce
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IV 159 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~V 159 (352)
.++++|||||++|+|+|.+|++++ .+|++++.. .+++ .+++...+.+.+.|+++||+++++ .+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v 205 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDT 205 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCce
Confidence 359999999999999999999887 899999987 5664 578999999999999999999999 78
Q ss_pred EEEECC----eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCC
Q 018671 160 KDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 234 (352)
Q Consensus 160 ~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~ 234 (352)
+++.++ .|.++||+++++|+||+++|.+|+. +.++++++.+ |.|.||++||+ ++|+|||+|||+..+.
T Consensus 206 ~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~T-s~p~IyA~GD~a~~~~---- 278 (785)
T TIGR02374 206 VEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQT-SDPDIYAVGECAEHNG---- 278 (785)
T ss_pred EEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCccc-CCCCEEEeeecceeCC----
Confidence 888754 4778999999999999999999995 7777888775 66999999998 9999999999998643
Q ss_pred cCCCCchHHHHHHHHHHHHHHHH
Q 018671 235 TVLPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 235 ~~~~~~~~~A~~qg~~~a~~i~~ 257 (352)
.....+..|.+||+++|.||..
T Consensus 279 -~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 279 -RVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred -cccccHHHHHHHHHHHHHHhcC
Confidence 1234677899999999999953
No 12
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=2e-29 Score=244.26 Aligned_cols=195 Identities=25% Similarity=0.317 Sum_probs=159.6
Q ss_pred CCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 16 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 16 ~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
..++.++.||+||||||++|+.|++||... ..+.+.+++..+.. . .++++|||||++|
T Consensus 121 v~~g~~~~~d~lViATGs~p~~p~i~g~~~--~~~~~~~~~~~l~~----------~----------~~~vvIIGgG~iG 178 (451)
T PRK07846 121 TGDGEEITADQVVIAAGSRPVIPPVIADSG--VRYHTSDTIMRLPE----------L----------PESLVIVGGGFIA 178 (451)
T ss_pred ECCCCEEEeCEEEEcCCCCCCCCCCCCcCC--ccEEchHHHhhhhh----------c----------CCeEEEECCCHHH
Confidence 334568999999999999999999999632 22344455433211 1 2499999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEE
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL 169 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~ 169 (352)
+|+|..+++++ .+|+++++. .+++.+++++.+.+.+.+ +.+|+++++ +|++++.+ .+.+
T Consensus 179 ~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~ 243 (451)
T PRK07846 179 AEFAHVFSALG--------------VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL 243 (451)
T ss_pred HHHHHHHHHcC--------------CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE
Confidence 99999999877 899999987 788889999988877654 568999998 79988753 3556
Q ss_pred cCCcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 170 NDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 170 ~~g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
.+|+++++|.+++|+|.+|+. + +++++++.+++|++.||+++|+ +.|+|||+|||+.. +++++.|.+
T Consensus 244 ~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~---------~~l~~~A~~ 313 (451)
T PRK07846 244 DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP---------YQLKHVANH 313 (451)
T ss_pred CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCC---------ccChhHHHH
Confidence 788899999999999999995 4 3567888888899999999997 99999999999952 567899999
Q ss_pred HHHHHHHHHHH
Q 018671 247 QGKYLFSLLNR 257 (352)
Q Consensus 247 qg~~~a~~i~~ 257 (352)
||+++|+||..
T Consensus 314 ~g~~~a~ni~~ 324 (451)
T PRK07846 314 EARVVQHNLLH 324 (451)
T ss_pred HHHHHHHHHcC
Confidence 99999999963
No 13
>PLN02507 glutathione reductase
Probab=99.97 E-value=5.8e-29 Score=243.59 Aligned_cols=188 Identities=24% Similarity=0.372 Sum_probs=158.7
Q ss_pred EeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHHH
Q 018671 21 KISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 100 (352)
Q Consensus 21 ~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~ 100 (352)
++.||+||||||+.|..|++||.. .. .+.+++..+.. ..++|+|||||++|+|+|.
T Consensus 165 ~~~~d~LIIATGs~p~~p~ipG~~-~~---~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~ 220 (499)
T PLN02507 165 RYTAKHILIATGSRAQRPNIPGKE-LA---ITSDEALSLEE--------------------LPKRAVVLGGGYIAVEFAS 220 (499)
T ss_pred EEEcCEEEEecCCCCCCCCCCCcc-ce---echHHhhhhhh--------------------cCCeEEEECCcHHHHHHHH
Confidence 689999999999999999999963 22 23344433211 1249999999999999999
Q ss_pred HHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C--eEEEcCCcE
Q 018671 101 ELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTE 174 (352)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g~~ 174 (352)
.++.++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|++++. + .+.+.+|++
T Consensus 221 ~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~ 286 (499)
T PLN02507 221 IWRGMG--------------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEE 286 (499)
T ss_pred HHHHcC--------------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcE
Confidence 998877 899999987 6888899999999999999999999999 7998864 3 355667889
Q ss_pred EecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHH
Q 018671 175 VPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 251 (352)
Q Consensus 175 i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~ 251 (352)
+++|.+++++|.+|+. + +++++++++++|+|.||+++|+ +.|||||+|||+.. +..++.|.+||+++
T Consensus 287 i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~---------~~l~~~A~~qg~~a 356 (499)
T PLN02507 287 FVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR---------INLTPVALMEGTCF 356 (499)
T ss_pred EEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC---------CccHHHHHHHHHHH
Confidence 9999999999999995 3 5677888888899999999998 99999999999952 56789999999999
Q ss_pred HHHHH
Q 018671 252 FSLLN 256 (352)
Q Consensus 252 a~~i~ 256 (352)
|+||.
T Consensus 357 a~ni~ 361 (499)
T PLN02507 357 AKTVF 361 (499)
T ss_pred HHHHc
Confidence 99985
No 14
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=2.4e-29 Score=240.15 Aligned_cols=193 Identities=27% Similarity=0.401 Sum_probs=162.4
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
..++.+|++||||||+|..|++||+.+..+ .+.+++.. ..+.| ++++|||||++|+|+
T Consensus 131 ~~~~~a~~iiIATGS~p~~~~~~~~~~~~~--~~s~~~l~----------~~~lP----------~~lvIiGgG~IGlE~ 188 (454)
T COG1249 131 KETITADNIIIATGSRPRIPPGPGIDGARI--LDSSDALF----------LLELP----------KSLVIVGGGYIGLEF 188 (454)
T ss_pred ceEEEeCEEEEcCCCCCcCCCCCCCCCCeE--Eechhhcc----------cccCC----------CEEEEECCCHHHHHH
Confidence 478999999999999999999999854321 11122211 11344 399999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCC
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDG 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g 172 (352)
|..++.++ ++||++++. ++||.+++++++.+.+.|++.|++++++ ++++++.+ .+.+++|
T Consensus 189 a~~~~~LG--------------~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g 254 (454)
T COG1249 189 ASVFAALG--------------SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDG 254 (454)
T ss_pred HHHHHHcC--------------CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecC
Confidence 99999998 999999997 8999999999999999999999999999 78888664 3667777
Q ss_pred c--EEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHH
Q 018671 173 T--EVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247 (352)
Q Consensus 173 ~--~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~q 247 (352)
+ ++.+|.+++|+|.+||. -+++.|++++++|+|.||+.+|+ +.|+|||+|||+.- |.+++.|..|
T Consensus 255 ~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~---------~~Lah~A~~e 324 (454)
T COG1249 255 EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG---------PMLAHVAMAE 324 (454)
T ss_pred CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC---------cccHhHHHHH
Confidence 6 79999999999999994 37888999999999999966665 89999999999851 5599999999
Q ss_pred HHHHHHHHHH
Q 018671 248 GKYLFSLLNR 257 (352)
Q Consensus 248 g~~~a~~i~~ 257 (352)
|+++|+||..
T Consensus 325 g~iaa~~i~g 334 (454)
T COG1249 325 GRIAAENIAG 334 (454)
T ss_pred HHHHHHHHhC
Confidence 9999999975
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.97 E-value=3.3e-29 Score=242.95 Aligned_cols=200 Identities=23% Similarity=0.355 Sum_probs=162.9
Q ss_pred cccccccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEE
Q 018671 9 TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 88 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 88 (352)
+.....+..++.++.||+||||||+.|+.|++||.+ ... +.+++..+ .. ..++++|
T Consensus 116 ~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~-~~~---~~~~~~~l----------~~----------~~~~vvV 171 (446)
T TIGR01424 116 GPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHE-LGI---TSNEAFHL----------PT----------LPKSILI 171 (446)
T ss_pred cCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCcc-cee---chHHhhcc----------cc----------cCCeEEE
Confidence 333333444566899999999999999999999963 221 22232211 11 1248999
Q ss_pred ECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--
Q 018671 89 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS-- 164 (352)
Q Consensus 89 vGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~-- 164 (352)
||+|++|+|+|..+++++ .+|++++++ .+++.+++++.+.+.+.|++.||+++++ +|++++.
T Consensus 172 IGgG~~g~E~A~~l~~~G--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~ 237 (446)
T TIGR01424 172 LGGGYIAVEFAGIWRGLG--------------VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTD 237 (446)
T ss_pred ECCcHHHHHHHHHHHHcC--------------CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence 999999999999998876 899999987 6788899999999999999999999999 7999864
Q ss_pred C--eEEEcCCcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCC
Q 018671 165 Q--KLILNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA 239 (352)
Q Consensus 165 ~--~v~~~~g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~ 239 (352)
+ .+.+.+|+++++|.+++|+|.+|+. . ++..+++++++|++.||+++|+ +.|+|||+|||+.. +.
T Consensus 238 ~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~ 307 (446)
T TIGR01424 238 DGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDR---------IN 307 (446)
T ss_pred CeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCC---------cc
Confidence 2 3556688899999999999999995 2 5677888888899999999998 99999999999951 66
Q ss_pred chHHHHHHHHHHHHHHH
Q 018671 240 LAQVAERQGKYLFSLLN 256 (352)
Q Consensus 240 ~~~~A~~qg~~~a~~i~ 256 (352)
.++.|.+||+++|+||.
T Consensus 308 l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 308 LTPVAIMEATCFANTEF 324 (446)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 88899999999999985
No 16
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=3.1e-29 Score=244.18 Aligned_cols=192 Identities=24% Similarity=0.392 Sum_probs=159.0
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.++.||+||||||+.|+.|++||.+ +++ +.+++..+ .. ..++++|||||++|+|+|
T Consensus 148 ~~~~~d~lIIATGs~p~~p~i~G~~-~~~---~~~~~~~~----------~~----------~~~~vvIIGgG~iG~E~A 203 (486)
T TIGR01423 148 ERLQAEHILLATGSWPQMLGIPGIE-HCI---SSNEAFYL----------DE----------PPRRVLTVGGGFISVEFA 203 (486)
T ss_pred eEEECCEEEEecCCCCCCCCCCChh-hee---chhhhhcc----------cc----------CCCeEEEECCCHHHHHHH
Confidence 5799999999999999999999973 222 33333211 11 125999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEEcCC
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDG 172 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g 172 (352)
..++.+.. .+.+|+|+++. ++++.+++++.+.+.+.|+++||+++++ .|++++.+ .+.+++|
T Consensus 204 ~~~~~l~~-----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g 272 (486)
T TIGR01423 204 GIFNAYKP-----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG 272 (486)
T ss_pred HHHHHhcc-----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC
Confidence 98876521 12899999987 6889999999999999999999999999 79888642 4666788
Q ss_pred cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHH
Q 018671 173 TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~ 249 (352)
+++++|.++|++|.+|+. . ++.++++++++|+|.||+++|+ +.|||||+|||+. .+..++.|.+||+
T Consensus 273 ~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~---------~~~l~~~A~~qG~ 342 (486)
T TIGR01423 273 KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD---------RVMLTPVAINEGA 342 (486)
T ss_pred CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC---------CcccHHHHHHHHH
Confidence 899999999999999995 3 4567888888899999999998 9999999999984 2678899999999
Q ss_pred HHHHHHH
Q 018671 250 YLFSLLN 256 (352)
Q Consensus 250 ~~a~~i~ 256 (352)
++|+||.
T Consensus 343 ~aa~ni~ 349 (486)
T TIGR01423 343 AFVDTVF 349 (486)
T ss_pred HHHHHHh
Confidence 9999985
No 17
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.97 E-value=9.8e-29 Score=239.58 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=159.0
Q ss_pred CeeEeeCCEEEEcCCCCCCCC-CCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHH
Q 018671 18 WKFKISYDKLVIALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 96 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~-~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 96 (352)
++.++.||+||||||++|+.| ++||.+ ..+ +.++... .... .++++|||||++|+
T Consensus 124 ~~~~~~~d~vIiAtGs~p~~p~~i~g~~-~~~---~~~~~~~----------~~~~----------~~~vvIIGgG~iG~ 179 (450)
T TIGR01421 124 NGRDYTAPHILIATGGKPSFPENIPGAE-LGT---DSDGFFA----------LEEL----------PKRVVIVGAGYIAV 179 (450)
T ss_pred CCEEEEeCEEEEecCCCCCCCCCCCCCc-eeE---cHHHhhC----------cccc----------CCeEEEECCCHHHH
Confidence 456799999999999999998 899863 221 2222211 1111 24999999999999
Q ss_pred HHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEE
Q 018671 97 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLIL 169 (352)
Q Consensus 97 e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~ 169 (352)
|+|..+++++ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|++++.+ .+.+
T Consensus 180 E~A~~l~~~g--------------~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~ 245 (450)
T TIGR01421 180 ELAGVLHGLG--------------SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF 245 (450)
T ss_pred HHHHHHHHcC--------------CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE
Confidence 9999999887 899999987 7889999999999999999999999999 78888642 3566
Q ss_pred cCC-cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHH
Q 018671 170 NDG-TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 245 (352)
Q Consensus 170 ~~g-~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~ 245 (352)
++| +++++|.|+|++|.+|+. . ++.++++++++|++.||+++|+ +.|+|||+|||+.. +..++.|.
T Consensus 246 ~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~---------~~~~~~A~ 315 (450)
T TIGR01421 246 EDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK---------VELTPVAI 315 (450)
T ss_pred CCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC---------cccHHHHH
Confidence 777 579999999999999995 3 5677888888999999999998 99999999999952 56788999
Q ss_pred HHHHHHHHHHH
Q 018671 246 RQGKYLFSLLN 256 (352)
Q Consensus 246 ~qg~~~a~~i~ 256 (352)
+||+.+|+||.
T Consensus 316 ~~g~~aa~~i~ 326 (450)
T TIGR01421 316 AAGRKLSERLF 326 (450)
T ss_pred HHHHHHHHHHh
Confidence 99999999985
No 18
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.96 E-value=2.2e-28 Score=238.68 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=157.3
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
..+++||+||||||++|+.|++||..+..+ +.+++..+ ...| ++++|||||++|+|+
T Consensus 139 ~~~~~~d~lVIATGs~p~~p~ipG~~~~~~---~~~~~~~~----------~~~~----------~~vvIIGgG~iG~E~ 195 (484)
T TIGR01438 139 EKIYSAERFLIATGERPRYPGIPGAKELCI---TSDDLFSL----------PYCP----------GKTLVVGASYVALEC 195 (484)
T ss_pred ceEEEeCEEEEecCCCCCCCCCCCccceee---cHHHhhcc----------cccC----------CCEEEECCCHHHHHH
Confidence 347999999999999999999999755432 22222211 1112 489999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C--eEEEcCC-
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDG- 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g- 172 (352)
|..+++++ .+|+++++..+++.+++++.+.+.+.|+++||+++++ .+++++. + .+.++++
T Consensus 196 A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~ 261 (484)
T TIGR01438 196 AGFLAGIG--------------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDST 261 (484)
T ss_pred HHHHHHhC--------------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCC
Confidence 99999887 8999999877889999999999999999999999998 6777763 2 3556565
Q ss_pred --cEEecceEEEecCCCcch-h--hhhcCCCCCC-CCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 173 --TEVPYGLLVWSTGVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 173 --~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~-~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
+++++|.++|++|.+|+. + ++..++++++ +|+|.||+++|+ +.|+|||+|||+.. .+..++.|.+
T Consensus 262 ~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~--------~~~l~~~A~~ 332 (484)
T TIGR01438 262 NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED--------KQELTPVAIQ 332 (484)
T ss_pred cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC--------CccchHHHHH
Confidence 379999999999999995 3 4667787765 589999999998 99999999999952 2567899999
Q ss_pred HHHHHHHHHHH
Q 018671 247 QGKYLFSLLNR 257 (352)
Q Consensus 247 qg~~~a~~i~~ 257 (352)
||+.+|+||..
T Consensus 333 ~g~~aa~~i~~ 343 (484)
T TIGR01438 333 AGRLLAQRLFS 343 (484)
T ss_pred HHHHHHHHHhc
Confidence 99999999863
No 19
>PRK06116 glutathione reductase; Validated
Probab=99.96 E-value=4.5e-28 Score=235.50 Aligned_cols=191 Identities=28% Similarity=0.393 Sum_probs=159.3
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.++.||+||||||+.|+.|++||.+ ++++ .++... .. ...++|+|||||++|+|
T Consensus 126 ~g~~~~~d~lViATGs~p~~p~i~g~~-~~~~---~~~~~~----------~~----------~~~~~vvViGgG~~g~E 181 (450)
T PRK06116 126 NGERYTADHILIATGGRPSIPDIPGAE-YGIT---SDGFFA----------LE----------ELPKRVAVVGAGYIAVE 181 (450)
T ss_pred CCEEEEeCEEEEecCCCCCCCCCCCcc-eeEc---hhHhhC----------cc----------ccCCeEEEECCCHHHHH
Confidence 556899999999999999999999963 2222 122111 11 11249999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEEc
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN 170 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~ 170 (352)
+|..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|++++.+ .+.+.
T Consensus 182 ~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~ 247 (450)
T PRK06116 182 FAGVLNGLG--------------SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLE 247 (450)
T ss_pred HHHHHHHcC--------------CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEc
Confidence 999998876 899999987 6788899999999999999999999998 79998642 35667
Q ss_pred CCcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHH
Q 018671 171 DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247 (352)
Q Consensus 171 ~g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~q 247 (352)
+|+++++|.|++|+|.+|+. . ++.++++.+++|++.||+++|+ +.|||||+|||+.. ++.+..|.+|
T Consensus 248 ~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~ 317 (450)
T PRK06116 248 DGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR---------VELTPVAIAA 317 (450)
T ss_pred CCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC---------cCcHHHHHHH
Confidence 88899999999999999994 2 5677888888899999999998 99999999999841 5678899999
Q ss_pred HHHHHHHHH
Q 018671 248 GKYLFSLLN 256 (352)
Q Consensus 248 g~~~a~~i~ 256 (352)
|+.+|+||.
T Consensus 318 g~~aa~~i~ 326 (450)
T PRK06116 318 GRRLSERLF 326 (450)
T ss_pred HHHHHHHHh
Confidence 999999995
No 20
>PLN02546 glutathione reductase
Probab=99.96 E-value=2.7e-28 Score=240.35 Aligned_cols=192 Identities=25% Similarity=0.386 Sum_probs=157.6
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.++.||+||||||++|..|++||.+ +++ +.+++..+ . ...++|+|||||++|+|
T Consensus 211 ~G~~~~~D~LVIATGs~p~~P~IpG~~-~v~---~~~~~l~~----------~----------~~~k~V~VIGgG~iGvE 266 (558)
T PLN02546 211 DGKLYTARNILIAVGGRPFIPDIPGIE-HAI---DSDAALDL----------P----------SKPEKIAIVGGGYIALE 266 (558)
T ss_pred CCEEEECCEEEEeCCCCCCCCCCCChh-hcc---CHHHHHhc----------c----------ccCCeEEEECCCHHHHH
Confidence 456899999999999999999999973 222 22222211 1 12359999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---CeEE--Ec
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QKLI--LN 170 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~v~--~~ 170 (352)
+|..+++++ .+|+++++. .+++.+++++.+.+.+.|+++||+++++ ++.+++. +.+. +.
T Consensus 267 ~A~~L~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~ 332 (558)
T PLN02546 267 FAGIFNGLK--------------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTN 332 (558)
T ss_pred HHHHHHhcC--------------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEEC
Confidence 999999876 899999987 6889999999999999999999999999 7888863 3333 34
Q ss_pred CCcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHH
Q 018671 171 DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247 (352)
Q Consensus 171 ~g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~q 247 (352)
+++...+|.++|++|.+|+. + +++++++++++|+|.||+++|+ +.|+|||+|||+.. +..++.|..|
T Consensus 333 ~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~---------~~l~~~A~~~ 402 (558)
T PLN02546 333 KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR---------INLTPVALME 402 (558)
T ss_pred CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC---------cccHHHHHHH
Confidence 45445699999999999995 3 5778888888899999999998 99999999999952 5678899999
Q ss_pred HHHHHHHHHH
Q 018671 248 GKYLFSLLNR 257 (352)
Q Consensus 248 g~~~a~~i~~ 257 (352)
|+++|+||..
T Consensus 403 g~~~a~~i~g 412 (558)
T PLN02546 403 GGALAKTLFG 412 (558)
T ss_pred HHHHHHHHcC
Confidence 9999999853
No 21
>PRK06370 mercuric reductase; Validated
Probab=99.96 E-value=5.1e-28 Score=235.87 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=158.5
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.++.||+||||||+.|+.|++||.++.. +.+..+.... .. ..++|+|||+|++|+|
T Consensus 128 ~~~~~~~d~lViATGs~p~~p~i~G~~~~~--~~~~~~~~~~----------~~----------~~~~vvVIGgG~~g~E 185 (463)
T PRK06370 128 GGETLRAKRIFINTGARAAIPPIPGLDEVG--YLTNETIFSL----------DE----------LPEHLVIIGGGYIGLE 185 (463)
T ss_pred CcEEEEeCEEEEcCCCCCCCCCCCCCCcCc--eEcchHhhCc----------cc----------cCCEEEEECCCHHHHH
Confidence 456899999999999999999999974321 1122222110 11 1259999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--e--EEEc-
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN- 170 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~- 170 (352)
+|..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.+.
T Consensus 186 ~A~~l~~~G--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~ 251 (463)
T PRK06370 186 FAQMFRRFG--------------SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDC 251 (463)
T ss_pred HHHHHHHcC--------------CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEe
Confidence 999999876 899999987 7888889999999999999999999999 89998753 2 3332
Q ss_pred --CCcEEecceEEEecCCCcch--h-hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHH
Q 018671 171 --DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 245 (352)
Q Consensus 171 --~g~~i~~D~vi~a~G~~~~~--~-~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~ 245 (352)
+++++++|.||+|+|.+|+. + ++..+++++++|++.||++||+ +.|+|||+|||+.. ++.++.|.
T Consensus 252 ~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~---------~~~~~~A~ 321 (463)
T PRK06370 252 NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR---------GAFTHTAY 321 (463)
T ss_pred CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC---------cccHHHHH
Confidence 34579999999999999994 3 5677888888999999999998 99999999999852 66789999
Q ss_pred HHHHHHHHHHHH
Q 018671 246 RQGKYLFSLLNR 257 (352)
Q Consensus 246 ~qg~~~a~~i~~ 257 (352)
.||+++|+||..
T Consensus 322 ~~g~~aa~ni~~ 333 (463)
T PRK06370 322 NDARIVAANLLD 333 (463)
T ss_pred HHHHHHHHHHhC
Confidence 999999999863
No 22
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.96 E-value=6e-28 Score=235.20 Aligned_cols=189 Identities=25% Similarity=0.410 Sum_probs=156.1
Q ss_pred EeeCCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
++.||+||||||+.|+.+++++.. +..++.+ +...+ ... .++++|||+|++|+|+|
T Consensus 137 ~~~~d~lViATGs~p~~~p~~~~~~~~v~~~~---~~~~~----------~~~----------~~~vvVIGgG~ig~E~A 193 (466)
T PRK07845 137 TLDADVVLIATGASPRILPTAEPDGERILTWR---QLYDL----------DEL----------PEHLIVVGSGVTGAEFA 193 (466)
T ss_pred EEecCEEEEcCCCCCCCCCCCCCCCceEEeeh---hhhcc----------ccc----------CCeEEEECCCHHHHHHH
Confidence 799999999999999876554431 2333322 21111 111 24899999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCCc
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGT 173 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~ 173 (352)
..|++++ .+|+++++. .+++.++++..+.+.+.|+++||+++++ +|++++. +. +.+.+|+
T Consensus 194 ~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~ 259 (466)
T PRK07845 194 SAYTELG--------------VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR 259 (466)
T ss_pred HHHHHcC--------------CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc
Confidence 9999877 899999987 7889999999999999999999999999 7988853 33 5567888
Q ss_pred EEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 174 EVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 174 ~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
++++|.+++++|.+|+. . +++++++++++|+|.||+++|+ +.|||||+|||+.. ++.++.|..||++
T Consensus 260 ~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~~g~~ 329 (466)
T PRK07845 260 TVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV---------LPLASVAAMQGRI 329 (466)
T ss_pred EEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC---------ccchhHHHHHHHH
Confidence 99999999999999995 3 5778888888899999999998 99999999999952 6789999999999
Q ss_pred HHHHHH
Q 018671 251 LFSLLN 256 (352)
Q Consensus 251 ~a~~i~ 256 (352)
+|.|+.
T Consensus 330 aa~~i~ 335 (466)
T PRK07845 330 AMYHAL 335 (466)
T ss_pred HHHHHc
Confidence 999886
No 23
>PRK14727 putative mercuric reductase; Provisional
Probab=99.96 E-value=1e-27 Score=234.26 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=155.3
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.++.||+||||||+.|..|++||..+..+ .+..+.. .... ..++++|||+|++|+|+|
T Consensus 147 ~~~~~d~lViATGs~p~~p~i~G~~~~~~--~~~~~~l----------~~~~----------~~k~vvVIGgG~iG~E~A 204 (479)
T PRK14727 147 RVLAADRCLIATGSTPTIPPIPGLMDTPY--WTSTEAL----------FSDE----------LPASLTVIGSSVVAAEIA 204 (479)
T ss_pred EEEEeCEEEEecCCCCCCCCCCCcCccce--ecchHHh----------cccc----------CCCeEEEECCCHHHHHHH
Confidence 47999999999999999999999744211 1112211 0111 125999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE--EEcCCcE
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTE 174 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v--~~~~g~~ 174 (352)
..+++++ .+|+++++.++++.+++++.+.+.+.|++.||+++++ +|++++. +.+ .++++ +
T Consensus 205 ~~l~~~G--------------~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~ 269 (479)
T PRK14727 205 QAYARLG--------------SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-E 269 (479)
T ss_pred HHHHHcC--------------CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-e
Confidence 9999877 8999999877888899999999999999999999998 7888863 333 33444 6
Q ss_pred EecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHH
Q 018671 175 VPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 251 (352)
Q Consensus 175 i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~ 251 (352)
+++|.+++++|..|+. + ++.++++.+++|+|.||+++|+ +.|+|||+|||+.. |..++.|..||+.+
T Consensus 270 i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~a 339 (479)
T PRK14727 270 LRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL---------PQFVYVAAAAGSRA 339 (479)
T ss_pred EEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCc---------chhhhHHHHHHHHH
Confidence 9999999999999995 3 4667888888899999999998 99999999999953 66788999999999
Q ss_pred HHHHH
Q 018671 252 FSLLN 256 (352)
Q Consensus 252 a~~i~ 256 (352)
|.||.
T Consensus 340 a~~i~ 344 (479)
T PRK14727 340 GINMT 344 (479)
T ss_pred HHHHc
Confidence 99985
No 24
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=5.4e-28 Score=234.52 Aligned_cols=195 Identities=25% Similarity=0.306 Sum_probs=157.7
Q ss_pred CCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 16 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 16 ~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
..++.+++||+||||||++|..|++++. ....+.+.+++.++.+ ..++++|||||++|
T Consensus 124 ~~~g~~~~~d~lIiATGs~p~~p~~~~~--~~~~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig 181 (452)
T TIGR03452 124 TGDGEEITGDQIVIAAGSRPYIPPAIAD--SGVRYHTNEDIMRLPE--------------------LPESLVIVGGGYIA 181 (452)
T ss_pred ECCCcEEEeCEEEEEECCCCCCCCCCCC--CCCEEEcHHHHHhhhh--------------------cCCcEEEECCCHHH
Confidence 3355679999999999999988764432 2223456666654421 12499999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEE
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL 169 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~ 169 (352)
+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.+ +.+|+++++ +|++++. +. +.+
T Consensus 182 ~E~A~~l~~~G--------------~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~ 246 (452)
T TIGR03452 182 AEFAHVFSALG--------------TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTL 246 (452)
T ss_pred HHHHHHHHhCC--------------CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEE
Confidence 99999998876 899999987 688888999988887655 468999998 7998874 23 455
Q ss_pred cCCcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 170 NDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 170 ~~g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
.+|+++++|.+++++|.+|+. + ++.++++++++|++.||+++|+ +.|+|||+|||+.. ++.++.|.+
T Consensus 247 ~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~ 316 (452)
T TIGR03452 247 DDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP---------YQLKHVANA 316 (452)
T ss_pred cCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc---------ccChhHHHH
Confidence 678899999999999999995 4 3567888888899999999997 99999999999952 577899999
Q ss_pred HHHHHHHHHHH
Q 018671 247 QGKYLFSLLNR 257 (352)
Q Consensus 247 qg~~~a~~i~~ 257 (352)
||+++|+||..
T Consensus 317 ~g~~~a~ni~~ 327 (452)
T TIGR03452 317 EARVVKHNLLH 327 (452)
T ss_pred HHHHHHHHhcC
Confidence 99999999963
No 25
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.96 E-value=8.9e-28 Score=234.21 Aligned_cols=192 Identities=25% Similarity=0.324 Sum_probs=157.6
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..+.||+||||||+.|+.|++||.++.. +.+.+++... .. ..++++|||+|++|+|+|
T Consensus 125 ~~~~~~~lIiATGs~p~~p~i~G~~~~~--~~~~~~~~~~----------~~----------~~~~vvIIGgG~~g~E~A 182 (463)
T TIGR02053 125 EVRGAKRFLIATGARPAIPPIPGLKEAG--YLTSEEALAL----------DR----------IPESLAVIGGGAIGVELA 182 (463)
T ss_pred EEEEeCEEEEcCCCCCCCCCCCCcccCc--eECchhhhCc----------cc----------CCCeEEEECCCHHHHHHH
Confidence 4689999999999999999999975431 2222332111 11 125999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEc---
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN--- 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~--- 170 (352)
..|++++ .+|+++++. ++++.+++++...+.+.|++.||+++++ +|++++.+ .+.+.
T Consensus 183 ~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~ 248 (463)
T TIGR02053 183 QAFARLG--------------SEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPG 248 (463)
T ss_pred HHHHHcC--------------CcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCC
Confidence 9999877 899999987 7889999999999999999999999999 79988753 23443
Q ss_pred CCcEEecceEEEecCCCcch--h-hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHH
Q 018671 171 DGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247 (352)
Q Consensus 171 ~g~~i~~D~vi~a~G~~~~~--~-~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~q 247 (352)
+++++++|.+++|+|.+|+. + ++..+++.+++|+|.||++||+ +.|+|||+|||+.. +..++.|..|
T Consensus 249 ~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~---------~~~~~~A~~~ 318 (463)
T TIGR02053 249 GQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG---------LQLEYVAAKE 318 (463)
T ss_pred CceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC---------cccHhHHHHH
Confidence 23679999999999999994 3 5667788888899999999998 99999999999952 6689999999
Q ss_pred HHHHHHHHHH
Q 018671 248 GKYLFSLLNR 257 (352)
Q Consensus 248 g~~~a~~i~~ 257 (352)
|+++|.||..
T Consensus 319 g~~aa~ni~~ 328 (463)
T TIGR02053 319 GVVAAENALG 328 (463)
T ss_pred HHHHHHHhcC
Confidence 9999999963
No 26
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.96 E-value=9.3e-28 Score=234.08 Aligned_cols=192 Identities=26% Similarity=0.432 Sum_probs=155.9
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
+.++.||+||||||++|..+ ||+......+.+.+++.++. ...++++|||||++|+|+
T Consensus 130 ~~~~~~d~lViAtGs~p~~~--pg~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~ 187 (462)
T PRK06416 130 EQTYTAKNIILATGSRPREL--PGIEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEF 187 (462)
T ss_pred cEEEEeCEEEEeCCCCCCCC--CCCCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHH
Confidence 36899999999999998754 56532222333444443221 112499999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--e--EEEcCC
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDG 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g 172 (352)
|..+++++ .+|+++++. .++|.+++++.+.+.+.|+++||+++++ +|++++++ . +.++++
T Consensus 188 A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g 253 (462)
T PRK06416 188 ASAYASLG--------------AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG 253 (462)
T ss_pred HHHHHHcC--------------CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC
Confidence 99998876 899999987 7889999999999999999999999999 89999754 3 344555
Q ss_pred ---cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 173 ---TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 173 ---~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
+++++|.+|+++|.+|+. + +++++++.+ +|++.||+++|+ +.|+|||+|||+.. ++++..|.+
T Consensus 254 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~---------~~~~~~A~~ 322 (462)
T PRK06416 254 GKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGG---------PMLAHKASA 322 (462)
T ss_pred CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCC---------cchHHHHHH
Confidence 679999999999999995 3 357788887 899999999997 89999999999952 678999999
Q ss_pred HHHHHHHHHHH
Q 018671 247 QGKYLFSLLNR 257 (352)
Q Consensus 247 qg~~~a~~i~~ 257 (352)
||+++|.||..
T Consensus 323 ~g~~aa~ni~~ 333 (462)
T PRK06416 323 EGIIAAEAIAG 333 (462)
T ss_pred HHHHHHHHHcC
Confidence 99999999964
No 27
>PRK14694 putative mercuric reductase; Provisional
Probab=99.96 E-value=1.8e-27 Score=232.23 Aligned_cols=190 Identities=22% Similarity=0.370 Sum_probs=154.9
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.+++||+||||||+.|+.|++||+++.. +.+.+++..+. . ..++++|||+|++|+|+|
T Consensus 137 ~~~~~d~lViATGs~p~~p~i~G~~~~~--~~~~~~~~~l~----------~----------~~~~vvViG~G~~G~E~A 194 (468)
T PRK14694 137 QTVHFDRAFIGTGARPAEPPVPGLAETP--YLTSTSALELD----------H----------IPERLLVIGASVVALELA 194 (468)
T ss_pred EEEECCEEEEeCCCCCCCCCCCCCCCCc--eEcchhhhchh----------c----------CCCeEEEECCCHHHHHHH
Confidence 4799999999999999999999985431 22223332211 1 124999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEEE-cCCcEE
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLIL-NDGTEV 175 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~-~~g~~i 175 (352)
..|++++ .+|+++++.++++.+++++.+.+.+.|++.||+++.+ +|++++.+ .+.+ .++.++
T Consensus 195 ~~l~~~g--------------~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i 260 (468)
T PRK14694 195 QAFARLG--------------SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTL 260 (468)
T ss_pred HHHHHcC--------------CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEE
Confidence 9999887 8999999878888899999999999999999999999 79888753 2332 234479
Q ss_pred ecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHH
Q 018671 176 PYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 252 (352)
Q Consensus 176 ~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a 252 (352)
++|.+++++|.+|+. + +..++++. .+|++.||+++|+ +.|+|||+|||+.. +...+.|..||+++|
T Consensus 261 ~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa 329 (468)
T PRK14694 261 RAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ---------PQFVYVAAAGGSRAA 329 (468)
T ss_pred EeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC---------cccHHHHHHHHHHHH
Confidence 999999999999995 3 35567765 4789999999998 99999999999952 667889999999999
Q ss_pred HHHH
Q 018671 253 SLLN 256 (352)
Q Consensus 253 ~~i~ 256 (352)
.||.
T Consensus 330 ~~i~ 333 (468)
T PRK14694 330 INMT 333 (468)
T ss_pred HHhc
Confidence 9985
No 28
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.96 E-value=2.2e-27 Score=231.39 Aligned_cols=191 Identities=23% Similarity=0.358 Sum_probs=157.7
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.++.||+||||||+.|..|++++.... .+.+.++...+ . ...++++|||||++|+|+|
T Consensus 134 ~~~~~d~lviATGs~p~~p~~~~~~~~--~v~~~~~~~~~----------~----------~~~~~v~IiGgG~~g~E~A 191 (461)
T PRK05249 134 ETLTADKIVIATGSRPYRPPDVDFDHP--RIYDSDSILSL----------D----------HLPRSLIIYGAGVIGCEYA 191 (461)
T ss_pred EEEEcCEEEEcCCCCCCCCCCCCCCCC--eEEcHHHhhch----------h----------hcCCeEEEECCCHHHHHHH
Confidence 379999999999999998887775221 11222222111 0 1125999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCCc
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGT 173 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~ 173 (352)
..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|++++. +. +.+++|+
T Consensus 192 ~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~ 257 (461)
T PRK05249 192 SIFAALG--------------VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK 257 (461)
T ss_pred HHHHHcC--------------CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC
Confidence 9999887 899999987 7889999999999999999999999998 7988873 33 4566788
Q ss_pred EEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 174 EVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 174 ~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
++++|.+++|+|.+|+. . ++.++++.+++|++.||+++|+ +.|+|||+|||+.. |+.+..|.+||++
T Consensus 258 ~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~---------~~~~~~A~~~g~~ 327 (461)
T PRK05249 258 KIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF---------PSLASASMDQGRI 327 (461)
T ss_pred EEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC---------cccHhHHHHHHHH
Confidence 99999999999999995 2 5677888888899999999998 89999999999852 6688999999999
Q ss_pred HHHHHH
Q 018671 251 LFSLLN 256 (352)
Q Consensus 251 ~a~~i~ 256 (352)
+|.||.
T Consensus 328 aa~~i~ 333 (461)
T PRK05249 328 AAQHAV 333 (461)
T ss_pred HHHHHc
Confidence 999986
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=99.96 E-value=3.6e-27 Score=235.34 Aligned_cols=191 Identities=21% Similarity=0.326 Sum_probs=156.1
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.+++||+||||||+.|+.|++||.++.. +.+..++. .... ..++++|||||++|+|+|
T Consensus 229 ~~~~~d~lviAtGs~p~~p~i~g~~~~~--~~~~~~~~----------~~~~----------~~~~vvViGgG~ig~E~A 286 (561)
T PRK13748 229 RVVAFDRCLIATGASPAVPPIPGLKETP--YWTSTEAL----------VSDT----------IPERLAVIGSSVVALELA 286 (561)
T ss_pred EEEEcCEEEEcCCCCCCCCCCCCCCccc--eEccHHHh----------hccc----------CCCeEEEECCCHHHHHHH
Confidence 4799999999999999999999975422 12212211 1111 125999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEEEc-CCcEE
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DGTEV 175 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~-~g~~i 175 (352)
..+++++ .+|+++++..+++.+++++.+.+.+.|++.||+++++ +|++++.+ .+.+. ++.++
T Consensus 287 ~~l~~~g--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i 352 (561)
T PRK13748 287 QAFARLG--------------SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGEL 352 (561)
T ss_pred HHHHHcC--------------CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeE
Confidence 9999887 8999999877888889999999999999999999999 78888642 33332 23479
Q ss_pred ecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHH
Q 018671 176 PYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 252 (352)
Q Consensus 176 ~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a 252 (352)
++|.+++++|.+|+. + +++++++.+++|+|.||+++|+ +.|||||+|||+.. +..++.|..||+++|
T Consensus 353 ~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa 422 (561)
T PRK13748 353 RADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ---------PQFVYVAAAAGTRAA 422 (561)
T ss_pred EeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCC---------ccchhHHHHHHHHHH
Confidence 999999999999995 3 4677888888899999999998 99999999999952 567889999999999
Q ss_pred HHHH
Q 018671 253 SLLN 256 (352)
Q Consensus 253 ~~i~ 256 (352)
.||.
T Consensus 423 ~~i~ 426 (561)
T PRK13748 423 INMT 426 (561)
T ss_pred HHHc
Confidence 9985
No 30
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=1.8e-27 Score=230.69 Aligned_cols=192 Identities=21% Similarity=0.350 Sum_probs=155.9
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.++.||+||||||++|..|++||+.+... +.+..+... ... ..++++|||||++|+|+|
T Consensus 116 ~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~~~----------~~~----------~~~~v~ViGgG~~g~E~A 174 (441)
T PRK08010 116 LEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLLN----------LKE----------LPGHLGILGGGYIGVEFA 174 (441)
T ss_pred EEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHhhc----------ccc----------cCCeEEEECCCHHHHHHH
Confidence 36999999999999999999999853211 112222111 111 124999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEEEc-CCcE
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DGTE 174 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~-~g~~ 174 (352)
..+++++ .+|++++++ .++|.+++++.+.+.+.|++.||+++++ +|++++.+ .+.+. ++.+
T Consensus 175 ~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~ 240 (441)
T PRK08010 175 SMFANFG--------------SKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ 240 (441)
T ss_pred HHHHHCC--------------CeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe
Confidence 9999876 899999987 6888889999999999999999999998 79988753 34332 2336
Q ss_pred EecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHH
Q 018671 175 VPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYL 251 (352)
Q Consensus 175 i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~ 251 (352)
+++|.+++|+|.+|+. + +..++++++++|+|.||+++|+ +.|+|||+|||+.. ++.++.|..||+++
T Consensus 241 i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~a~~~~~~~ 310 (441)
T PRK08010 241 LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGG---------LQFTYISLDDYRIV 310 (441)
T ss_pred EEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC---------ccchhHHHHHHHHH
Confidence 9999999999999995 3 4567888888899999999998 89999999999952 57888999999999
Q ss_pred HHHHH
Q 018671 252 FSLLN 256 (352)
Q Consensus 252 a~~i~ 256 (352)
+.||.
T Consensus 311 ~~~~~ 315 (441)
T PRK08010 311 RDELL 315 (441)
T ss_pred HHHHc
Confidence 99985
No 31
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=220.41 Aligned_cols=222 Identities=24% Similarity=0.373 Sum_probs=182.8
Q ss_pred Eeecccccc-ccCCCeeEeeCCEEEEcCCCCCCCCCCCCc-cccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 5 CETVTDELR-TLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~i~yD~LViAtGs~~~~~~ipG~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
+...|-..+ ++.++++.++||+|+||||+.++.+++||. .++.+.+++++++..+...+. .
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~-----------------~ 212 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ-----------------L 212 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-----------------c
Confidence 444444443 466788999999999999999999999998 478889999999987765542 2
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-CCcHHHHHHHHHHHHhCCCEEEeC-ce
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRG-IV 159 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~v~~~-~V 159 (352)
...|+++|+|..|+|+|.+|.... .+||+|++. ..++ .+.+.+.+.+++.|+++||+++.+ .+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence 358999999999999999998764 899999997 5665 678999999999999999999999 68
Q ss_pred EEEECC------eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCC
Q 018671 160 KDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 232 (352)
Q Consensus 160 ~~v~~~------~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~ 232 (352)
.+++.+ .|.+.||+++++|+||+.+|.+|++ +.+. +.-.+.+|.|.||+.+|+ +.|||||+||++.++-+-
T Consensus 279 s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~ 356 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG 356 (478)
T ss_pred eecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceee-ccCCcccccceeeccccc
Confidence 888764 4788999999999999999999995 6665 666788999999999999 899999999999876431
Q ss_pred -CCcCCCCchHHHHHHHHHHHHHHHHHh
Q 018671 233 -GKTVLPALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 233 -~~~~~~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
+.......++.|..+|+.+...|+...
T Consensus 357 ~~~~~~v~H~~~A~~~g~~av~ai~~~~ 384 (478)
T KOG1336|consen 357 YGEDRRVEHVDHARASGRQAVKAIKMAP 384 (478)
T ss_pred ccccccchHHHHHHHHHHhhhhhhhccC
Confidence 111125678889999998887776543
No 32
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=4.3e-27 Score=229.37 Aligned_cols=190 Identities=21% Similarity=0.310 Sum_probs=153.7
Q ss_pred eEeeCCEEEEcCCCCCCC-CCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 20 FKISYDKLVIALGAEAST-FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~-~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.++.||+||||||++|.. |.+++..++. .+.+++..+ .. ..++++|||||++|+|+
T Consensus 133 ~~~~~d~lViATGs~p~~~p~~~~~~~~v---~~~~~~~~~----------~~----------~~~~vvIiGgG~iG~E~ 189 (471)
T PRK06467 133 TVIEFDNAIIAAGSRPIQLPFIPHDDPRI---WDSTDALEL----------KE----------VPKRLLVMGGGIIGLEM 189 (471)
T ss_pred EEEEcCEEEEeCCCCCCCCCCCCCCCCcE---EChHHhhcc----------cc----------CCCeEEEECCCHHHHHH
Confidence 579999999999999974 5566543332 223333321 11 12499999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCC
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g 172 (352)
|..+++++ .+|+++++. +++|.+++++.+.+.+.|++. |+++++ +|++++. +. +.++++
T Consensus 190 A~~l~~~G--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~ 254 (471)
T PRK06467 190 GTVYHRLG--------------SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGK 254 (471)
T ss_pred HHHHHHcC--------------CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeC
Confidence 99999877 899999987 789999999999999999998 999999 7888863 33 344432
Q ss_pred ----cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHH
Q 018671 173 ----TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAE 245 (352)
Q Consensus 173 ----~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~ 245 (352)
+++++|.|++++|.+|+. + ...++++++++|+|.||+++|+ +.|+|||+|||+.. |..++.|.
T Consensus 255 ~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~---------~~la~~A~ 324 (471)
T PRK06467 255 KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ---------PMLAHKGV 324 (471)
T ss_pred CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC---------cccHHHHH
Confidence 469999999999999995 2 4667888888999999999998 99999999999852 67899999
Q ss_pred HHHHHHHHHHHH
Q 018671 246 RQGKYLFSLLNR 257 (352)
Q Consensus 246 ~qg~~~a~~i~~ 257 (352)
+||+++|.||..
T Consensus 325 ~eG~~aa~~i~g 336 (471)
T PRK06467 325 HEGHVAAEVIAG 336 (471)
T ss_pred HHHHHHHHHHcC
Confidence 999999999863
No 33
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.95 E-value=5.4e-27 Score=229.87 Aligned_cols=191 Identities=23% Similarity=0.339 Sum_probs=155.8
Q ss_pred eeEeeCCEEEEcCCCCCCCCC-CCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~-ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
+..+.||+||||||+.|+.|. +||..+..+ +.+++..+ ... .++++|||||++|+|
T Consensus 140 ~~~i~~d~lIIATGs~p~~p~~i~G~~~~~~---~~~~~~~~----------~~~----------~~~vvIIGgG~iG~E 196 (499)
T PTZ00052 140 EETITAKYILIATGGRPSIPEDVPGAKEYSI---TSDDIFSL----------SKD----------PGKTLIVGASYIGLE 196 (499)
T ss_pred ceEEECCEEEEecCCCCCCCCCCCCccceee---cHHHHhhh----------hcC----------CCeEEEECCCHHHHH
Confidence 357999999999999999884 999754432 22332211 111 248999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C--eEEEcCC
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDG 172 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g 172 (352)
+|..|++++ .+|+++++..+++.+++++.+.+.+.|++.||+++.+ .+++++. + .+.+.+|
T Consensus 197 ~A~~l~~~G--------------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g 262 (499)
T PTZ00052 197 TAGFLNELG--------------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG 262 (499)
T ss_pred HHHHHHHcC--------------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC
Confidence 999999887 8999998777788899999999999999999999998 6777764 2 4566788
Q ss_pred cEEecceEEEecCCCcch-hh--hhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHH
Q 018671 173 TEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~-~~--~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~ 249 (352)
+++++|.|+|++|.+|+. ++ +.++++++++|++.+++. ++ +.|+|||+|||+. + .|.+++.|.+||+
T Consensus 263 ~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~-----~---~~~l~~~A~~~g~ 332 (499)
T PTZ00052 263 TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE-----G---RPELTPVAIKAGI 332 (499)
T ss_pred CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC-----C---CcccHHHHHHHHH
Confidence 899999999999999995 43 577888888898777766 77 9999999999985 1 2678999999999
Q ss_pred HHHHHHH
Q 018671 250 YLFSLLN 256 (352)
Q Consensus 250 ~~a~~i~ 256 (352)
++|+||.
T Consensus 333 ~aa~ni~ 339 (499)
T PTZ00052 333 LLARRLF 339 (499)
T ss_pred HHHHHHh
Confidence 9999995
No 34
>PTZ00058 glutathione reductase; Provisional
Probab=99.95 E-value=5.4e-27 Score=231.05 Aligned_cols=199 Identities=21% Similarity=0.351 Sum_probs=156.4
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.++.||+||||||++|..|++||.+ +++ +.++... .. ..++++|||||++|+|
T Consensus 197 ~g~~i~ad~lVIATGS~P~~P~IpG~~-~v~---ts~~~~~----------l~-----------~pk~VvIIGgG~iGlE 251 (561)
T PTZ00058 197 DGQVIEGKNILIAVGNKPIFPDVKGKE-FTI---SSDDFFK----------IK-----------EAKRIGIAGSGYIAVE 251 (561)
T ss_pred CCcEEECCEEEEecCCCCCCCCCCCce-eEE---EHHHHhh----------cc-----------CCCEEEEECCcHHHHH
Confidence 456799999999999999999999963 322 2222211 11 1359999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC---e--EEEc
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---K--LILN 170 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~---~--v~~~ 170 (352)
+|..++.++ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ .|.+++++ . +.+.
T Consensus 252 ~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~ 317 (561)
T PTZ00058 252 LINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS 317 (561)
T ss_pred HHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC
Confidence 999999887 899999987 7889999999999999999999999999 79988753 2 3333
Q ss_pred CC-cEEecceEEEecCCCcch-hh--hhcCCCCCCCCccccCCccccCCCCCEEEEcccccccc----------------
Q 018671 171 DG-TEVPYGLLVWSTGVGPST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE---------------- 230 (352)
Q Consensus 171 ~g-~~i~~D~vi~a~G~~~~~-~~--~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~---------------- 230 (352)
++ +++++|.|++++|.+|+. .+ +..++. +++|+|.||+++|+ +.|+|||+|||+..++
T Consensus 318 ~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~ 395 (561)
T PTZ00058 318 DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEE 395 (561)
T ss_pred CCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCcc-CCCCEEEeEeccCccccccccccccccccccc
Confidence 44 579999999999999994 33 222332 45799999999998 9999999999997432
Q ss_pred --------CCCCcC-CCCchHHHHHHHHHHHHHHHH
Q 018671 231 --------STGKTV-LPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 231 --------~~~~~~-~~~~~~~A~~qg~~~a~~i~~ 257 (352)
..+... .+++++.|..||+++|.||..
T Consensus 396 p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 396 PYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred cccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 112222 378899999999999999953
No 35
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=4.4e-27 Score=229.41 Aligned_cols=188 Identities=26% Similarity=0.438 Sum_probs=153.4
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCcc--ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
.+++||+||||||+.|+.+ ||.. +..+ +..+.. .... ..++++|||||++|+|
T Consensus 132 ~~~~~d~lViATGs~p~~~--pg~~~~~~v~---~~~~~~----------~~~~----------~~~~vvVIGgG~ig~E 186 (466)
T PRK07818 132 ETVTFDNAIIATGSSTRLL--PGTSLSENVV---TYEEQI----------LSRE----------LPKSIVIAGAGAIGME 186 (466)
T ss_pred eEEEcCEEEEeCCCCCCCC--CCCCCCCcEE---chHHHh----------cccc----------CCCeEEEECCcHHHHH
Confidence 5799999999999999764 6642 2222 222211 0111 1249999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--e--EEEc-
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN- 170 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~- 170 (352)
+|..+++++ .+|+++++. +++|.+++++.+.+.+.|+++||+++++ +|++++++ . +.+.
T Consensus 187 ~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~ 252 (466)
T PRK07818 187 FAYVLKNYG--------------VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSK 252 (466)
T ss_pred HHHHHHHcC--------------CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEe
Confidence 999999887 899999986 7889999999999999999999999999 79998754 2 3443
Q ss_pred -CC--cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHH
Q 018671 171 -DG--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 244 (352)
Q Consensus 171 -~g--~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A 244 (352)
+| +++++|.|++++|.+|+. . ++..+++++++|++.||+++|+ +.|+|||+|||+.. +++++.|
T Consensus 253 ~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~---------~~l~~~A 322 (466)
T PRK07818 253 KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAK---------LQLAHVA 322 (466)
T ss_pred cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCC---------cccHhHH
Confidence 56 479999999999999995 2 5677888888899999999998 99999999999852 6789999
Q ss_pred HHHHHHHHHHHH
Q 018671 245 ERQGKYLFSLLN 256 (352)
Q Consensus 245 ~~qg~~~a~~i~ 256 (352)
.+||+++|.||.
T Consensus 323 ~~~g~~aa~~i~ 334 (466)
T PRK07818 323 EAQGVVAAETIA 334 (466)
T ss_pred HHHHHHHHHHHc
Confidence 999999999996
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.95 E-value=8.8e-27 Score=227.23 Aligned_cols=192 Identities=24% Similarity=0.380 Sum_probs=156.9
Q ss_pred eEeeCCEEEEcCCCCCCCCCCC-CccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIH-GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ip-G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.++.||+||||||+.|+.|++| +.... .+.+.+++..+. ...++|+|||||++|+|+
T Consensus 128 ~~~~~d~lVlAtG~~p~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~vvViGgG~~g~e~ 185 (461)
T TIGR01350 128 ETLTAKNIIIATGSRPRSLPGPFDFDGE--VVITSTGALNLK--------------------EVPESLVIIGGGVIGIEF 185 (461)
T ss_pred EEEEeCEEEEcCCCCCCCCCCCCCCCCc--eEEcchHHhccc--------------------cCCCeEEEECCCHHHHHH
Confidence 5799999999999999988776 33211 223334432211 112499999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE--EEcCC
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDG 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v--~~~~g 172 (352)
|..+++.+ .+|+++++. .++|.+++++.+.+.+.|++.||+++.+ +|++++. +.+ .+.+|
T Consensus 186 A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g 251 (461)
T TIGR01350 186 ASIFASLG--------------SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGG 251 (461)
T ss_pred HHHHHHcC--------------CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence 99998876 899999997 6889999999999999999999999999 7988863 344 34466
Q ss_pred --cEEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHH
Q 018671 173 --TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQ 247 (352)
Q Consensus 173 --~~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~q 247 (352)
+++++|.+|+|+|.+|+. +++.+++.++++|++.||+++|+ +.|+|||+|||+.. +++++.|.+|
T Consensus 252 ~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~---------~~~~~~A~~~ 321 (461)
T TIGR01350 252 ETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG---------PMLAHVASHE 321 (461)
T ss_pred cEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCC---------cccHHHHHHH
Confidence 579999999999999994 36778888888899999999998 89999999999952 6789999999
Q ss_pred HHHHHHHHHH
Q 018671 248 GKYLFSLLNR 257 (352)
Q Consensus 248 g~~~a~~i~~ 257 (352)
|+.+|+||..
T Consensus 322 g~~aa~~i~~ 331 (461)
T TIGR01350 322 GIVAAENIAG 331 (461)
T ss_pred HHHHHHHHcC
Confidence 9999999864
No 37
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=2.8e-26 Score=223.51 Aligned_cols=190 Identities=23% Similarity=0.342 Sum_probs=149.6
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.++.||+||||||++|. ++||+. +....+ +.+++.. ... ..++++|||||++|+|+
T Consensus 133 ~~~~~d~lVIATGs~p~--~ipg~~~~~~~~~-~~~~~~~----------~~~----------~~~~vvIIGgG~ig~E~ 189 (466)
T PRK06115 133 TQLEAKDIVIATGSEPT--PLPGVTIDNQRII-DSTGALS----------LPE----------VPKHLVVIGAGVIGLEL 189 (466)
T ss_pred EEEEeCEEEEeCCCCCC--CCCCCCCCCCeEE-CHHHHhC----------Ccc----------CCCeEEEECCCHHHHHH
Confidence 47999999999999985 467753 222111 2222211 111 23599999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eE--EEc--
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KL--ILN-- 170 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v--~~~-- 170 (352)
|..+++++ .+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|++++++ .+ .+.
T Consensus 190 A~~l~~~G--------------~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~ 255 (466)
T PRK06115 190 GSVWRRLG--------------AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPA 255 (466)
T ss_pred HHHHHHcC--------------CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEc
Confidence 99999877 899999987 7889999999999999999999999999 79998753 33 332
Q ss_pred -C--CcEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHH
Q 018671 171 -D--GTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 244 (352)
Q Consensus 171 -~--g~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A 244 (352)
+ ++++++|.|++++|.+|+. . ++..++..+++| +.||+++|+ +.|+|||+|||+.. |++++.|
T Consensus 256 ~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~---------~~la~~A 324 (466)
T PRK06115 256 AGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG---------PMLAHKA 324 (466)
T ss_pred CCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCC---------cccHHHH
Confidence 2 3579999999999999984 2 345567776667 678999998 99999999999952 6789999
Q ss_pred HHHHHHHHHHHHH
Q 018671 245 ERQGKYLFSLLNR 257 (352)
Q Consensus 245 ~~qg~~~a~~i~~ 257 (352)
.+||+++|+||..
T Consensus 325 ~~~g~~aa~~i~~ 337 (466)
T PRK06115 325 EDEAVACIERIAG 337 (466)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999953
No 38
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.95 E-value=4e-26 Score=222.55 Aligned_cols=193 Identities=27% Similarity=0.330 Sum_probs=154.3
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 96 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 96 (352)
++.++.||+||||||+. .|++||..+ ....+.+.+++..+ . ...++++|||+|++|+
T Consensus 125 ~~~~~~~d~lIiATGs~--~p~ipg~~~~~~~~~~~~~~~~~~----------~----------~~~k~v~VIGgG~~g~ 182 (460)
T PRK06292 125 NGERIEAKNIVIATGSR--VPPIPGVWLILGDRLLTSDDAFEL----------D----------KLPKSLAVIGGGVIGL 182 (460)
T ss_pred CcEEEEeCEEEEeCCCC--CCCCCCCcccCCCcEECchHHhCc----------c----------ccCCeEEEECCCHHHH
Confidence 45689999999999999 456677532 11112233333211 1 1225999999999999
Q ss_pred HHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC---eEEE--
Q 018671 97 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLIL-- 169 (352)
Q Consensus 97 e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~---~v~~-- 169 (352)
|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|+++ |+++++ +|++++.+ .+.+
T Consensus 183 E~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~ 247 (460)
T PRK06292 183 ELGQALSRLG--------------VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE 247 (460)
T ss_pred HHHHHHHHcC--------------CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE
Confidence 9999999877 899999987 688989999999999999999 999998 89998753 3553
Q ss_pred cCC--cEEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHH
Q 018671 170 NDG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 244 (352)
Q Consensus 170 ~~g--~~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A 244 (352)
.++ +++++|.+++++|.+|+. .++.++++.+++|++.||+++|+ +.|+|||+|||+.. +++++.|
T Consensus 248 ~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~---------~~~~~~A 317 (460)
T PRK06292 248 KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK---------PPLLHEA 317 (460)
T ss_pred cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC---------ccchhHH
Confidence 233 579999999999999994 25677888888899999999998 99999999999952 5678999
Q ss_pred HHHHHHHHHHHHH
Q 018671 245 ERQGKYLFSLLNR 257 (352)
Q Consensus 245 ~~qg~~~a~~i~~ 257 (352)
..||+++|.||..
T Consensus 318 ~~qg~~aa~~i~~ 330 (460)
T PRK06292 318 ADEGRIAAENAAG 330 (460)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999964
No 39
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.94 E-value=2.8e-26 Score=228.85 Aligned_cols=194 Identities=22% Similarity=0.315 Sum_probs=153.4
Q ss_pred CeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 18 WKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 18 ~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
++.++.||+||||||+.|..|++++... ..+.+.+++..+.. .+ ++|+|||||++|+|
T Consensus 269 ~g~~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~----------lp----------k~VvIVGgG~iGvE 326 (659)
T PTZ00153 269 SGKEFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG----------LQ----------NYMGIVGMGIIGLE 326 (659)
T ss_pred CCEEEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh----------cC----------CceEEECCCHHHHH
Confidence 4568999999999999999887666422 12233445443211 12 48999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHH-HhCCCEEEeC-ceEEEECCe----EEE-
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQK----LIL- 169 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~V~~v~~~~----v~~- 169 (352)
+|..++.++ .+|+++++. .+++.+++++.+.+.+.+ ++.||+++++ .|++++.+. +.+
T Consensus 327 ~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~ 392 (659)
T PTZ00153 327 FMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIG 392 (659)
T ss_pred HHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEE
Confidence 999998877 899999987 789999999999999876 6789999999 799987532 432
Q ss_pred -cC-------C--------cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCC-----CCCEEEEccc
Q 018671 170 -ND-------G--------TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPS-----VQDVFAVGDC 225 (352)
Q Consensus 170 -~~-------g--------~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~-----~~~IfaiGD~ 225 (352)
.+ + +++++|.|+||+|.+|+. . ++..++..+ +|+|.||++||+.. .|+|||+|||
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv 471 (659)
T PTZ00153 393 HSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDA 471 (659)
T ss_pred EeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEec
Confidence 21 1 279999999999999995 3 356677766 48999999999842 6999999999
Q ss_pred cccccCCCCcCCCCchHHHHHHHHHHHHHHHH
Q 018671 226 SGYLESTGKTVLPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 226 a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~ 257 (352)
+. . +++++.|..||+++|+||..
T Consensus 472 ~g------~---~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 472 NG------K---QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CC------C---ccCHHHHHHHHHHHHHHHcC
Confidence 84 2 67899999999999999963
No 40
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=2.5e-26 Score=223.49 Aligned_cols=189 Identities=25% Similarity=0.419 Sum_probs=152.1
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.+++||+||||||++|+.++++|... ..+ +.+++..+ ...| ++++|||||++|+|+
T Consensus 129 ~~~~~d~lviATGs~p~~~p~~~~~~~~v~---~~~~~~~~----------~~~~----------~~vvIIGgG~iG~E~ 185 (458)
T PRK06912 129 EVVDAEQFIIAAGSEPTELPFAPFDGKWII---NSKHAMSL----------PSIP----------SSLLIVGGGVIGCEF 185 (458)
T ss_pred EEEECCEEEEeCCCCCCCCCCCCCCCCeEE---cchHHhCc----------cccC----------CcEEEECCCHHHHHH
Confidence 47999999999999998887777532 222 22333221 1112 499999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEEEc-CC-
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DG- 172 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~-~g- 172 (352)
|..+.+++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|++++.+ .+.+. +|
T Consensus 186 A~~l~~~g--------------~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~ 251 (458)
T PRK06912 186 ASIYSRLG--------------TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGS 251 (458)
T ss_pred HHHHHHcC--------------CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCc
Confidence 99998766 899999987 7888899999999999999999999999 79998754 34443 44
Q ss_pred -cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHH
Q 018671 173 -TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 248 (352)
Q Consensus 173 -~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg 248 (352)
+++++|.+++|+|.+|+. . ++..++..+++| +.||+++|+ +.|||||+|||+. .++++..|.+||
T Consensus 252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~---------~~~la~~A~~~g 320 (458)
T PRK06912 252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG---------GIQLAHVAFHEG 320 (458)
T ss_pred eEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC---------CcccHHHHHHHH
Confidence 369999999999999984 2 355677776666 999999998 8999999999995 177899999999
Q ss_pred HHHHHHHH
Q 018671 249 KYLFSLLN 256 (352)
Q Consensus 249 ~~~a~~i~ 256 (352)
+++|.|+.
T Consensus 321 ~~aa~~~~ 328 (458)
T PRK06912 321 TTAALHAS 328 (458)
T ss_pred HHHHHHHc
Confidence 99999985
No 41
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=5.8e-26 Score=219.97 Aligned_cols=193 Identities=23% Similarity=0.440 Sum_probs=155.1
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
..++.||+||||||+.|+.|++||+.+... +.+..++..+ .. ..++|+|||||++|+|+
T Consensus 114 ~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~~~~----------~~----------~~~~vvIIGgG~~g~e~ 172 (438)
T PRK07251 114 KIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGIQSL----------ET----------LPERLGIIGGGNIGLEF 172 (438)
T ss_pred cEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHHhcc----------hh----------cCCeEEEECCCHHHHHH
Confidence 357999999999999999999999743221 1122222111 01 12489999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEE-EcCCc
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLI-LNDGT 173 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~-~~~g~ 173 (352)
|..+++++ .+|+++++. .+++..++++.+.+.+.|+++||+++++ +|++++.+ .+. ..+|+
T Consensus 173 A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~ 238 (438)
T PRK07251 173 AGLYNKLG--------------SKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE 238 (438)
T ss_pred HHHHHHcC--------------CeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe
Confidence 99998876 899999997 7888889999999999999999999998 79998753 343 34677
Q ss_pred EEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 174 EVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 174 ~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
++++|.+|+|+|.+|+. . ++..++..+++|++.||+++|+ +.|||||+|||+.. +...+.|..||++
T Consensus 239 ~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~---------~~~~~~a~~~~~~ 308 (438)
T PRK07251 239 TYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGG---------PQFTYISLDDFRI 308 (438)
T ss_pred EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC---------cccHhHHHHHHHH
Confidence 89999999999999984 2 3445666777899999999998 89999999999841 6778899999999
Q ss_pred HHHHHH
Q 018671 251 LFSLLN 256 (352)
Q Consensus 251 ~a~~i~ 256 (352)
++.++.
T Consensus 309 ~~~~~~ 314 (438)
T PRK07251 309 VFGYLT 314 (438)
T ss_pred HHHHHc
Confidence 988775
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=7.4e-26 Score=221.12 Aligned_cols=191 Identities=23% Similarity=0.339 Sum_probs=151.4
Q ss_pred eeEeeCCEEEEcCCCCCCCCC-CCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~-ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
+.+++||+||||||+.|+.++ ++...... .+.+++..+ .. ..++|+|||+|++|+|
T Consensus 141 ~~~~~~d~lViATGs~p~~~p~~~~~~~~~---~~~~~~~~~----------~~----------~~~~vvVvGgG~~g~E 197 (475)
T PRK06327 141 ETVITAKHVIIATGSEPRHLPGVPFDNKII---LDNTGALNF----------TE----------VPKKLAVIGAGVIGLE 197 (475)
T ss_pred CeEEEeCEEEEeCCCCCCCCCCCCCCCceE---ECcHHHhcc----------cc----------cCCeEEEECCCHHHHH
Confidence 458999999999999997542 22111111 122222111 11 1259999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--e--EEEcC
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND 171 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~ 171 (352)
+|..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|++++.+ . +.+.+
T Consensus 198 ~A~~l~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~ 263 (475)
T PRK06327 198 LGSVWRRLG--------------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTD 263 (475)
T ss_pred HHHHHHHcC--------------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEe
Confidence 999998876 899999987 6888889999999999999999999999 89998753 3 44444
Q ss_pred --C--cEEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHH
Q 018671 172 --G--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVA 244 (352)
Q Consensus 172 --g--~~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A 244 (352)
| +++++|.+++++|.+|+. ..+.++++.+++|++.||+++|+ +.|+|||+|||+.. |+.++.|
T Consensus 264 ~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~---------~~~~~~A 333 (475)
T PRK06327 264 ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG---------PMLAHKA 333 (475)
T ss_pred CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC---------cchHHHH
Confidence 3 479999999999999994 24567888888899999999998 89999999999852 6689999
Q ss_pred HHHHHHHHHHHH
Q 018671 245 ERQGKYLFSLLN 256 (352)
Q Consensus 245 ~~qg~~~a~~i~ 256 (352)
..||..+|+||.
T Consensus 334 ~~~G~~aa~~i~ 345 (475)
T PRK06327 334 EEEGVAVAERIA 345 (475)
T ss_pred HHHHHHHHHHHc
Confidence 999999999985
No 43
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.94 E-value=8.8e-26 Score=207.63 Aligned_cols=195 Identities=26% Similarity=0.288 Sum_probs=146.9
Q ss_pred CCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 16 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 16 ~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
..++.++.||+||+|||+.|+.|++||..+.. .+.+...... + ....+.++|+|||+|++|
T Consensus 93 ~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~--~~~~~~~~~~----------------~-~~~~~~~~v~ViG~G~~~ 153 (300)
T TIGR01292 93 TGDGKEYTAKAVIIATGASARKLGIPGEDEFL--GRGVSYCATC----------------D-GPFFKNKEVAVVGGGDSA 153 (300)
T ss_pred eCCCCEEEeCEEEECCCCCcccCCCCChhhcC--CccEEEeeec----------------C-hhhcCCCEEEEECCChHH
Confidence 34456899999999999999999999864321 0000000000 0 011233699999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhC-CCEEEeC-ceEEEECCe----EEE
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQK----LIL 169 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-~V~~v~~~~----v~~ 169 (352)
+|+|.+|++.+ .+|+++++.+.+. ....+.+.|++. ||+++.+ ++++++++. +++
T Consensus 154 ~e~a~~l~~~~--------------~~V~~v~~~~~~~-----~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~ 214 (300)
T TIGR01292 154 IEEALYLTRIA--------------KKVTLVHRRDKFR-----AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKI 214 (300)
T ss_pred HHHHHHHHhhc--------------CEEEEEEeCcccC-----cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEE
Confidence 99999998766 8999999864322 123455667777 9999988 899988652 444
Q ss_pred c---CC--cEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHH
Q 018671 170 N---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 243 (352)
Q Consensus 170 ~---~g--~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~ 243 (352)
. +| +++++|++|||+|++|+. ++..+ ++.+++|++.||+++++ ++||||++|||+.. .++.+..
T Consensus 215 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~--------~~~~~~~ 284 (300)
T TIGR01292 215 KNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRT-SVPGVFAAGDVRDK--------GYRQAVT 284 (300)
T ss_pred EecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCcc-CCCCEEEeecccCc--------chhhhhh
Confidence 3 23 579999999999999985 77776 66778899999999997 99999999999962 2677889
Q ss_pred HHHHHHHHHHHHHHH
Q 018671 244 AERQGKYLFSLLNRI 258 (352)
Q Consensus 244 A~~qg~~~a~~i~~~ 258 (352)
|+.||+.+|.+|.+.
T Consensus 285 A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 285 AAGDGCIAALSAERY 299 (300)
T ss_pred hhhhHHHHHHHHHhh
Confidence 999999999998754
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=99.94 E-value=7.2e-26 Score=210.64 Aligned_cols=202 Identities=22% Similarity=0.195 Sum_probs=150.8
Q ss_pred cCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChH
Q 018671 15 LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 94 (352)
Q Consensus 15 ~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 94 (352)
++.+...+.||+||||||+.|+.|++||...+ ..+.+........ .....++|+|||+|++
T Consensus 97 v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~~~-----------------~~~~g~~vvVvGgG~~ 157 (321)
T PRK10262 97 LTGDSGEYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATCDG-----------------FFYRNQKVAVIGGGNT 157 (321)
T ss_pred EEecCCEEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecCCH-----------------HHcCCCEEEEECCCHH
Confidence 33334478999999999999999999996432 1111111111000 0123469999999999
Q ss_pred HHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEE
Q 018671 95 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLI 168 (352)
Q Consensus 95 g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~ 168 (352)
|+|+|..|++++ .+|+++++...++ .++.+.+.+.+.|++.||+++++ .+++++++ .|+
T Consensus 158 g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~ 222 (321)
T PRK10262 158 AVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVR 222 (321)
T ss_pred HHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEE
Confidence 999999999876 8999999874232 34677888889999999999998 79999875 356
Q ss_pred EcCC------cEEecceEEEecCCCcchhhhhcCCCCCCCCccccCC-----ccccCCCCCEEEEccccccccCCCCcCC
Q 018671 169 LNDG------TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE-----WLRVPSVQDVFAVGDCSGYLESTGKTVL 237 (352)
Q Consensus 169 ~~~g------~~i~~D~vi~a~G~~~~~~~~~~~l~~~~~G~i~Vd~-----~l~~~~~~~IfaiGD~a~~~~~~~~~~~ 237 (352)
+.++ +++++|.|+|++|.+|+..+...++.++ +|+|.||+ ++++ +.|+|||+|||+.. .
T Consensus 223 ~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~-~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~--------~ 292 (321)
T PRK10262 223 LRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQT-SIPGVFAAGDVMDH--------I 292 (321)
T ss_pred EEEcCCCCeEEEEECCEEEEEeCCccChhHhhcccccc-CCEEEECCCCccccccc-CCCCEEECeeccCC--------C
Confidence 6432 4799999999999999963333356553 58999997 5676 99999999999952 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhh
Q 018671 238 PALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 238 ~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+++...|+.+|..||..|.+.+.
T Consensus 293 ~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 293 YRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred cceEEEEehhHHHHHHHHHHHHH
Confidence 44556699999999999988775
No 45
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=4.4e-25 Score=215.69 Aligned_cols=190 Identities=28% Similarity=0.441 Sum_probs=147.9
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.++.||+||||||++|+.+ ||.......+.+.+++..+ ... .++++|||||++|+|+|
T Consensus 139 ~~~~~d~lViATGs~p~~~--p~~~~~~~~~~~~~~~~~~----------~~~----------~~~vvIIGgG~~G~E~A 196 (472)
T PRK05976 139 EMIIPENLLIATGSRPVEL--PGLPFDGEYVISSDEALSL----------ETL----------PKSLVIVGGGVIGLEWA 196 (472)
T ss_pred EEEEcCEEEEeCCCCCCCC--CCCCCCCceEEcchHhhCc----------ccc----------CCEEEEECCCHHHHHHH
Confidence 5799999999999999754 3331111112223333221 111 24999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEE---CCeE---EEcC
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD---SQKL---ILND 171 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~---~~~v---~~~~ 171 (352)
..|++++ .+|+++++. .++|.+++++.+.+.+.|++.||+++++ +|++++ .+++ .+.+
T Consensus 197 ~~l~~~g--------------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~ 262 (472)
T PRK05976 197 SMLADFG--------------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN 262 (472)
T ss_pred HHHHHcC--------------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC
Confidence 9999876 899999987 7889999999999999999999999999 799987 3433 2346
Q ss_pred C--cEEecceEEEecCCCcch-h--hhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 172 G--TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 172 g--~~i~~D~vi~a~G~~~~~-~--~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
| +++++|.+++++|.+|+. . ++..++.. .+|++.||+++|+ +.|+|||+|||+.. +++++.|.+
T Consensus 263 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~~---------~~~~~~A~~ 331 (472)
T PRK05976 263 GEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIGE---------PQLAHVAMA 331 (472)
T ss_pred CceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEeeecCCC---------cccHHHHHH
Confidence 6 369999999999999984 2 33445544 4689999999998 88999999999841 678999999
Q ss_pred HHHHHHHHHH
Q 018671 247 QGKYLFSLLN 256 (352)
Q Consensus 247 qg~~~a~~i~ 256 (352)
||+++|+||.
T Consensus 332 ~g~~aa~~i~ 341 (472)
T PRK05976 332 EGEMAAEHIA 341 (472)
T ss_pred HHHHHHHHHc
Confidence 9999999984
No 46
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=2.8e-25 Score=214.98 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=179.8
Q ss_pred Eeecccccccc-CCCeeEeeCCEEEEcCCCCCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 5 CETVTDELRTL-EPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~i~yD~LViAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
++.++.+.+++ +..+.++.||.|||||||.|..+++||.. ..++.+++++|..++.+.- +.
T Consensus 82 v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a-----------------r~ 144 (793)
T COG1251 82 VIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA-----------------RN 144 (793)
T ss_pred eEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----------------hc
Confidence 45566666655 45677899999999999999999999984 5788999999998875531 22
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-CCCcHHHHHHHHHHHHhCCCEEEeC-ce
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-SSFDDRLRHYATTQLSKSGVRLVRG-IV 159 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-~~~~~~~~~~~~~~l~~~gV~v~~~-~V 159 (352)
.++-+|||||.-|+|+|..|.+.+ .++++++-.+ ++ .++++.....+.+.++++|++++++ ..
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t 210 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNT 210 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccch
Confidence 346799999999999999999987 8999998774 44 6788899999999999999999988 44
Q ss_pred EEEEC----CeEEEcCCcEEecceEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCC
Q 018671 160 KDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 234 (352)
Q Consensus 160 ~~v~~----~~v~~~~g~~i~~D~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~ 234 (352)
.++.+ +.+.|+||+.+++|.|||++|++|+ .+....+++.++ .|.||+++|| +.|+|||+|+|+.+..
T Consensus 211 ~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mqT-sdpdIYAvGEcae~~g---- 283 (793)
T COG1251 211 EEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQT-SDPDIYAVGECAEHRG---- 283 (793)
T ss_pred hhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccccc-cCCCeeehhhHHHhcC----
Confidence 44433 4789999999999999999999999 488889999876 5999999999 9999999999998643
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHH
Q 018671 235 TVLPALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 235 ~~~~~~~~~A~~qg~~~a~~i~~~ 258 (352)
..+.+...+..||+.+|.++...
T Consensus 284 -~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 284 -KVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred -ccceehhHHHHHHHHHHHHhccC
Confidence 24667788999999999988654
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.92 E-value=2.3e-24 Score=208.86 Aligned_cols=201 Identities=21% Similarity=0.211 Sum_probs=143.3
Q ss_pred EeeCCEEEEcCCC-CCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...||+||||||+ .|+.+++||.+ ++++.. .+...... + +.....+.. ......+++|+|||||++|+|+
T Consensus 216 ~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~---~~~l~~~~-~---~~~~~~~~~-~~~~~~gk~VvVIGgG~~a~d~ 287 (449)
T TIGR01316 216 FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSA---NDFLTRAN-L---MKAYEFPHA-DTPVYAGKSVVVIGGGNTAVDS 287 (449)
T ss_pred HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEH---HHHHHHHh-h---ccccccccc-CCcccCCCeEEEECCCHHHHHH
Confidence 4579999999998 68888999963 222222 22111110 0 000000000 0011245799999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC------eEEE
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLIL 169 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~------~v~~ 169 (352)
|..+.+++ .+|+++++. + -++.. ....+.+++.||+++++ .++++..+ .|.+
T Consensus 288 A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~ 348 (449)
T TIGR01316 288 ARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKF 348 (449)
T ss_pred HHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEE
Confidence 99999887 789999875 2 22222 22335678899999988 67777532 2333
Q ss_pred c---------CC-----------cEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEcccccc
Q 018671 170 N---------DG-----------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 228 (352)
Q Consensus 170 ~---------~g-----------~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~ 228 (352)
. +| .++++|+||+++|..|+. +++.++++.+++|+|.||+++|+ +.|+|||+|||+.
T Consensus 349 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~- 426 (449)
T TIGR01316 349 RKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRT-SIPGVFAGGDIIL- 426 (449)
T ss_pred EEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCcc-CCCCEEEecCCCC-
Confidence 2 22 269999999999999995 66777888888899999999998 8999999999985
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHHHHHH
Q 018671 229 LESTGKTVLPALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~ 258 (352)
+ +.++..|+.||+.+|.+|...
T Consensus 427 ----g----~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 427 ----G----AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred ----C----cHHHHHHHHHHHHHHHHHHhh
Confidence 1 668899999999999999764
No 48
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.3e-24 Score=193.13 Aligned_cols=189 Identities=26% Similarity=0.392 Sum_probs=156.5
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..++..++.||||+.|.+|+|||. |+....... |++.++| ++++|||+|++++|+|
T Consensus 150 ~~Ytak~iLIAtGg~p~~PnIpG~-E~gidSDgf-------------f~Lee~P----------kr~vvvGaGYIavE~A 205 (478)
T KOG0405|consen 150 IVYTAKHILIATGGRPIIPNIPGA-ELGIDSDGF-------------FDLEEQP----------KRVVVVGAGYIAVEFA 205 (478)
T ss_pred EEEecceEEEEeCCccCCCCCCch-hhccccccc-------------cchhhcC----------ceEEEEccceEEEEhh
Confidence 347889999999999999999996 554443222 2333344 4999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEEcCC
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDG 172 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g 172 (352)
.-++.++ .+++|+-+. .+|..|++.++..+.+.|...||++|.+ .++++... .+..+.|
T Consensus 206 gi~~gLg--------------sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~ 271 (478)
T KOG0405|consen 206 GIFAGLG--------------SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG 271 (478)
T ss_pred hHHhhcC--------------CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecc
Confidence 9999998 899999887 7999999999999999999999999988 67776542 3455666
Q ss_pred cEEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHH
Q 018671 173 TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~ 249 (352)
+...+|.++||+|..|+. -+++.|+.++++|.|.||++.++ +.|+||++||++.- ..+..+|+..|+
T Consensus 272 ~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk---------~~LTPVAiaagr 341 (478)
T KOG0405|consen 272 TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK---------INLTPVAIAAGR 341 (478)
T ss_pred ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc---------EecchHHHhhhh
Confidence 555699999999999995 36777888999999999999998 99999999999852 445568999999
Q ss_pred HHHHHHH
Q 018671 250 YLFSLLN 256 (352)
Q Consensus 250 ~~a~~i~ 256 (352)
.+|+.+-
T Consensus 342 ~la~rlF 348 (478)
T KOG0405|consen 342 KLANRLF 348 (478)
T ss_pred hHHHHhh
Confidence 9997664
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.92 E-value=2e-24 Score=212.72 Aligned_cols=196 Identities=21% Similarity=0.245 Sum_probs=147.0
Q ss_pred CCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 16 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 16 ~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
..++..+.||+||+|||+.|+.+++||..++. .+.+........ .....++|+|||||++|
T Consensus 304 ~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~~~~-----------------~~~~~k~VvViGgG~~g 364 (515)
T TIGR03140 304 LESGEVLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPHCDG-----------------PFFKGKDVAVIGGGNSG 364 (515)
T ss_pred ECCCCEEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeeccCh-----------------hhcCCCEEEEECCcHHH
Confidence 34556899999999999999999999964321 111100000000 01124699999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHh-CCCEEEeC-ceEEEECC-----eEE
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IVKDVDSQ-----KLI 168 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V~~v~~~-----~v~ 168 (352)
+|+|..|+.++ .+|++++..+.+. ....+.+.+++ .||+++.+ .++++.++ .|.
T Consensus 365 ~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~ 425 (515)
T TIGR03140 365 IEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIR 425 (515)
T ss_pred HHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEE
Confidence 99999998876 7999999764321 12345667776 59999999 78998765 366
Q ss_pred EcC---C--cEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchH
Q 018671 169 LND---G--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 242 (352)
Q Consensus 169 ~~~---g--~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~ 242 (352)
+.+ | +++++|.|++++|.+|+. ++... ++.+++|+|.||+++|+ +.|+|||+|||+..+ .+++.
T Consensus 426 ~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~--------~~~~~ 495 (515)
T TIGR03140 426 YQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVP--------YKQII 495 (515)
T ss_pred EEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCC-CCCCEEEcccccCCc--------cceEE
Confidence 643 2 469999999999999995 66665 77778899999999998 999999999999631 35567
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018671 243 VAERQGKYLFSLLNRIG 259 (352)
Q Consensus 243 ~A~~qg~~~a~~i~~~~ 259 (352)
.|+.+|..+|.++...+
T Consensus 496 ~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 496 IAMGEGAKAALSAFDYL 512 (515)
T ss_pred EEEccHHHHHHHHHHHH
Confidence 89999999999988765
No 50
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.91 E-value=6.1e-24 Score=200.07 Aligned_cols=205 Identities=23% Similarity=0.232 Sum_probs=143.6
Q ss_pred EeeCCEEEEcCCC-CCCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGA-EASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs-~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.+.||+||||||+ .|..|++||.+. +.+. ..+.+..+.......+.....+ ....++++|||+|++|+|+
T Consensus 116 ~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~------~~~g~~vvViG~G~~g~e~ 187 (352)
T PRK12770 116 VKKYDAVLIATGTWKSRKLGIPGEDLPGVYS--ALEYLFRIRAAKLGYLPWEKVP------PVEGKKVVVVGAGLTAVDA 187 (352)
T ss_pred HhhCCEEEEEeCCCCCCcCCCCCccccCcee--HHHHHHHhhhcccccccccccc------ccCCCEEEEECCCHHHHHH
Confidence 4789999999999 478889999743 2221 1222222111100000000000 1124699999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCcc-EEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-e---EEE---
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-K---LIL--- 169 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-~---v~~--- 169 (352)
|..+...+ . +|+++++...... .......+.|+++||+++++ .+++++++ . +.+
T Consensus 188 A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~ 250 (352)
T PRK12770 188 ALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKM 250 (352)
T ss_pred HHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEE
Confidence 99998765 4 4999987532211 11133456689999999998 78888653 2 222
Q ss_pred -----------------cCCcEEecceEEEecCCCcch-hhhh-cCCCCCCCCccccCCccccCCCCCEEEEcccccccc
Q 018671 170 -----------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 230 (352)
Q Consensus 170 -----------------~~g~~i~~D~vi~a~G~~~~~-~~~~-~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~ 230 (352)
.+++++++|.+|+++|.+|++ +..+ ++++.+++|++.||+++++ +.|+|||+|||+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~-- 327 (352)
T PRK12770 251 RLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMT-SREGVFAAGDVVTG-- 327 (352)
T ss_pred EecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCccc-CCCCEEEEcccccC--
Confidence 123579999999999999996 5444 7787888899999999998 89999999999852
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 231 STGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 231 ~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|..+..|++||+.+|.+|...+.
T Consensus 328 -------~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 328 -------PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999988764
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.90 E-value=3.2e-23 Score=205.77 Aligned_cols=199 Identities=20% Similarity=0.180 Sum_probs=142.5
Q ss_pred cCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChH
Q 018671 15 LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 94 (352)
Q Consensus 15 ~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 94 (352)
+...+.++.||+||||||+.|+.|++||.+++. ...+..+..... ....+++|+|||||++
T Consensus 94 V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~--~~~v~~~~~~~~-----------------~~~~g~~VvVIGgG~~ 154 (555)
T TIGR03143 94 IKTARGDYKTLAVLIATGASPRKLGFPGEEEFT--GRGVAYCATCDG-----------------EFFTGMDVFVIGGGFA 154 (555)
T ss_pred EEecCCEEEEeEEEECCCCccCCCCCCCHHHhC--CceEEEEeecCh-----------------hhcCCCEEEEECCCHH
Confidence 333445789999999999999999999964321 111100000000 0123469999999999
Q ss_pred HHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCe----EEE
Q 018671 95 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK----LIL 169 (352)
Q Consensus 95 g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~----v~~ 169 (352)
|+|+|..|++++ .+|+++++.+.+. ..... ..+.++..||+++.+ .|+++.++. +.+
T Consensus 155 g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~~---~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~ 216 (555)
T TIGR03143 155 AAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKLI---AEKVKNHPKIEVKFNTELKEATGDDGLRYAKF 216 (555)
T ss_pred HHHHHHHHHccC--------------CEEEEEEeCCccc-cCHHH---HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEE
Confidence 999999998776 8999999874221 12222 233345569999999 799997652 222
Q ss_pred ---cCCcEE----ecce----EEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCC
Q 018671 170 ---NDGTEV----PYGL----LVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL 237 (352)
Q Consensus 170 ---~~g~~i----~~D~----vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~ 237 (352)
.+|++. ++|. |+|++|.+|+. ++. .+++++++|+|.||+++|+ +.|+|||+|||+.. .
T Consensus 217 ~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~-~~l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~--------~ 286 (555)
T TIGR03143 217 VNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFK-GVVELDKRGYIPTNEDMET-NVPGVYAAGDLRPK--------E 286 (555)
T ss_pred EECCCCCEEEEeccccccceEEEEEeCCCCChhHHh-hhcccCCCCeEEeCCcccc-CCCCEEEceeccCC--------C
Confidence 356543 3666 99999999996 444 3577788899999999998 99999999999741 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhh
Q 018671 238 PALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 238 ~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+..+..|+.||+.+|.+|.+.+.
T Consensus 287 ~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 287 LRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred cchheeHHhhHHHHHHHHHHHHH
Confidence 44567899999999999988776
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.90 E-value=7.1e-23 Score=199.27 Aligned_cols=199 Identities=20% Similarity=0.240 Sum_probs=143.8
Q ss_pred EeeCCEEEEcCCCC-CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
.+.||+||||||+. |+.+++||.... .+..+..+..... ... .......+++|+|||||++|+|+|
T Consensus 223 ~~~~d~vvlAtGa~~~~~~~i~G~~~~-----gv~~~~~~l~~~~----~~~----~~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 223 RAGYDAVFIGTGAGLPRFLGIPGENLG-----GVYSAVDFLTRVN----QAV----ADYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred HhhCCEEEEccCCCCCCCCCCCCccCC-----CcEEHHHHHHHHh----hcc----ccccCCCCCeEEEECCCHHHHHHH
Confidence 37899999999996 777789986321 1112222211111 000 000112356999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCe-----EEEc-
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK-----LILN- 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~-----v~~~- 170 (352)
..+.+++. .+|+++++. . .++.... ..+.+++.||+++++ .+.++.++. |.+.
T Consensus 290 ~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~ 351 (457)
T PRK11749 290 RTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVR 351 (457)
T ss_pred HHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEE
Confidence 99987751 389999875 2 4444322 246678899999998 788886542 5542
Q ss_pred ------------------CCcEEecceEEEecCCCcch-hhh-hcCCCCCCCCccccCC-ccccCCCCCEEEEccccccc
Q 018671 171 ------------------DGTEVPYGLLVWSTGVGPST-LVK-SLDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDCSGYL 229 (352)
Q Consensus 171 ------------------~g~~i~~D~vi~a~G~~~~~-~~~-~~~l~~~~~G~i~Vd~-~l~~~~~~~IfaiGD~a~~~ 229 (352)
+++++++|+||+++|.+|+. +.. ..++..+++|++.||+ ++++ +.|+|||+|||+.
T Consensus 352 ~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~-- 428 (457)
T PRK11749 352 MELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVT-- 428 (457)
T ss_pred EEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCC--
Confidence 23479999999999999995 433 4567788889999998 7777 8999999999994
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 230 ESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 230 ~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+ ++++..|+.||+.+|.+|.+.+.
T Consensus 429 ---~----~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 429 ---G----AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred ---C----chHHHHHHHHHHHHHHHHHHHHh
Confidence 1 56889999999999999998875
No 53
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=194.86 Aligned_cols=221 Identities=26% Similarity=0.272 Sum_probs=179.7
Q ss_pred EeeccccccccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCC
Q 018671 5 CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+..++...+.+...+.++.||+||+|||+.|..++ ....+..+.++..+++..++..... .+
T Consensus 76 v~~id~~~~~v~~~~g~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 137 (415)
T COG0446 76 VTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP-----------------PK 137 (415)
T ss_pred EEEecCCCCEEEECCCcccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-----------------cC
Confidence 55666666665554449999999999999999876 2223557888999999888776521 34
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCc-HHHHHHHHHHHHhCCCEEEeC-ceEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKSGVRLVRG-IVKD 161 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~-~~~~~~~~~~l~~~gV~v~~~-~V~~ 161 (352)
+++|||+|+.|+|+|..+++.+ ++|++++.. ++++.+- +...+.+.+.|+++||+++.+ .+.+
T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 203 (415)
T COG0446 138 DVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVG 203 (415)
T ss_pred eEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEE
Confidence 9999999999999999999987 899999997 7887776 899999999999999999999 7999
Q ss_pred EECCe-------EEEcCCcEEecceEEEecCCCcchhhhhcCC--CCCCCCccccCCccccCCCCCEEEEccccccccCC
Q 018671 162 VDSQK-------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 232 (352)
Q Consensus 162 v~~~~-------v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l--~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~ 232 (352)
++.+. +...+++++++|.+++++|.+|+..+.+... ....+|++.||+.+++..+++||++|||+..+.+.
T Consensus 204 i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~ 283 (415)
T COG0446 204 VEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283 (415)
T ss_pred EEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeeccc
Confidence 98752 5778889999999999999999865444443 44567899999999883499999999999887654
Q ss_pred -CCcCCCCchHHHHHHHHHHHHHHHH
Q 018671 233 -GKTVLPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 233 -~~~~~~~~~~~A~~qg~~~a~~i~~ 257 (352)
+.......++.|..+++.++.++..
T Consensus 284 ~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 284 TGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred CCceeeeechhhHhhhhHHHHHHhcc
Confidence 2334577889999999999998864
No 54
>PRK12831 putative oxidoreductase; Provisional
Probab=99.90 E-value=7.4e-23 Score=198.85 Aligned_cols=202 Identities=19% Similarity=0.194 Sum_probs=142.8
Q ss_pred EeeCCEEEEcCCC-CCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
.+.||+||||||+ .|+.+++||.+ +++++..++.+...+... . .+. .......+++|+|||||++|+|+
T Consensus 226 ~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~----~----~~~-~~~~~~~gk~VvVIGgG~va~d~ 296 (464)
T PRK12831 226 EEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKA----Y----KPE-YDTPIKVGKKVAVVGGGNVAMDA 296 (464)
T ss_pred ccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccc----c----ccc-ccCcccCCCeEEEECCcHHHHHH
Confidence 4679999999998 58889999964 233332222111110000 0 000 00111345799999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C-e---EEE
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K---LIL 169 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-~---v~~ 169 (352)
|..+.+++ .+|+++.+. ..++....++ +.+.+.||+++++ .+.++.. + . |.+
T Consensus 297 A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~ 357 (464)
T PRK12831 297 ARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKC 357 (464)
T ss_pred HHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEE
Confidence 99999887 789999875 2344322222 3456789999988 6777643 2 2 222
Q ss_pred c------------------CCc--EEecceEEEecCCCcch-hhhh-cCCCCCCCCccccCCc-cccCCCCCEEEEcccc
Q 018671 170 N------------------DGT--EVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCS 226 (352)
Q Consensus 170 ~------------------~g~--~i~~D~vi~a~G~~~~~-~~~~-~~l~~~~~G~i~Vd~~-l~~~~~~~IfaiGD~a 226 (352)
. +|+ ++++|+||+++|+.|+. ++.. .+++.+++|++.||++ ++| +.|+|||+|||+
T Consensus 358 ~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~ 436 (464)
T PRK12831 358 IKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLT-SKEGVFAGGDAV 436 (464)
T ss_pred EEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCcc-CCCCEEEeCCCC
Confidence 1 222 69999999999999995 5554 5788888899999997 887 999999999998
Q ss_pred ccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 227 GYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 227 ~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
. | +.++..|+.+|+.+|.+|.+.+.
T Consensus 437 ~-----g----~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 437 T-----G----AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred C-----C----chHHHHHHHHHHHHHHHHHHHhc
Confidence 5 2 56789999999999999998875
No 55
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.90 E-value=6.9e-23 Score=202.08 Aligned_cols=196 Identities=21% Similarity=0.239 Sum_probs=147.2
Q ss_pred CCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHH
Q 018671 17 PWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 96 (352)
Q Consensus 17 ~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 96 (352)
.++.++.||+||+|||+.++.+++||..++... .+...... +. ...++++|+|||||++|+
T Consensus 304 ~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~--~v~~~~~~----------------~~-~~~~gk~VvVVGgG~~g~ 364 (517)
T PRK15317 304 ANGAVLKAKTVILATGARWRNMNVPGEDEYRNK--GVAYCPHC----------------DG-PLFKGKRVAVIGGGNSGV 364 (517)
T ss_pred CCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCc--eEEEeecc----------------Cc-hhcCCCEEEEECCCHHHH
Confidence 455689999999999999999999996443110 00000000 00 012346999999999999
Q ss_pred HHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHh-CCCEEEeC-ceEEEECC-----eEEE
Q 018671 97 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK-SGVRLVRG-IVKDVDSQ-----KLIL 169 (352)
Q Consensus 97 e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~-~gV~v~~~-~V~~v~~~-----~v~~ 169 (352)
|+|..|+.++ .+|+++++.+.+.. .+.+.+.+.+ .||+++.+ .++++.++ .+.+
T Consensus 365 e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~ 425 (517)
T PRK15317 365 EAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTY 425 (517)
T ss_pred HHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEE
Confidence 9999999876 89999988643311 2345566665 59999999 78888776 2555
Q ss_pred c---CC--cEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHH
Q 018671 170 N---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 243 (352)
Q Consensus 170 ~---~g--~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~ 243 (352)
. +| +++++|.+++++|.+|++ ++... +.++++|++.||+++|+ +.|+|||+|||+..+ .+....
T Consensus 426 ~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~--------~k~~~~ 495 (517)
T PRK15317 426 KDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP--------YKQIII 495 (517)
T ss_pred EECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCC-CCCCEEECccccCCC--------CCEEEE
Confidence 4 33 369999999999999985 66665 77778899999999997 999999999999642 467889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018671 244 AERQGKYLFSLLNRIGK 260 (352)
Q Consensus 244 A~~qg~~~a~~i~~~~~ 260 (352)
|+.+|..||.++...+.
T Consensus 496 A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 496 AMGEGAKAALSAFDYLI 512 (517)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 99999999999877665
No 56
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.89 E-value=4.7e-22 Score=203.71 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=142.3
Q ss_pred eEeeCCEEEEcCCCCC-CCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 20 FKISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
....||+||||||+.+ ..+++||..++++. .++.....+.. .+....+++|+|||||++|+|+
T Consensus 620 ~~~gYDaVILATGA~~~~~l~IpG~~~gV~s--aldfL~~~k~~--------------~~~~~~GKrVVVIGGGnVAmD~ 683 (1019)
T PRK09853 620 KNEGYDYVVVAIGADKNGGLKLEGGNQNVIK--ALPFLEEYKNK--------------GTALKLGKHVVVVGGGNTAMDA 683 (1019)
T ss_pred eeccCCEEEECcCCCCCCCCCCCCccCCcee--hHHHHHHHhhh--------------cccccCCCEEEEECCChHHHHH
Confidence 3556999999999984 55678886443322 22222111110 0011235799999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC-eEE------
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-KLI------ 168 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-~v~------ 168 (352)
|..+.+... ..+|+++.+. ..+|..++++.+. + +.||+++.. .+.+++.+ .+.
T Consensus 684 Ar~a~RlgG------------akeVTLVyRr~~~~MPA~~eEle~A----l-eeGVe~~~~~~p~~I~~dG~l~~~~~~l 746 (1019)
T PRK09853 684 ARAALRVPG------------VEKVTVVYRRTKQEMPAWREEYEEA----L-EDGVEFKELLNPESFDADGTLTCRVMKL 746 (1019)
T ss_pred HHHHHhcCC------------CceEEEEEccCcccccccHHHHHHH----H-HcCCEEEeCCceEEEEcCCcEEEEEEEe
Confidence 998776531 1489999875 4666655544332 2 469999987 67777532 221
Q ss_pred -------------EcCCcEEecceEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCC
Q 018671 169 -------------LNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK 234 (352)
Q Consensus 169 -------------~~~g~~i~~D~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~ 234 (352)
..++.++++|+||+|+|..|+ .++...+++.+++|++.||+++++ +.|+|||+|||+..
T Consensus 747 g~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqT-s~pgVFAaGD~a~G------ 819 (1019)
T PRK09853 747 GEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGET-SLTNVYMIGDVQRG------ 819 (1019)
T ss_pred ecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCccc-CCCCEEEEeccccC------
Confidence 123357999999999999999 477888888888899999999998 89999999999852
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHh
Q 018671 235 TVLPALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 235 ~~~~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
|.++..|+.||+.||+||....
T Consensus 820 ---p~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 820 ---PSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred ---chHHHHHHHHHHHHHHHHhhhc
Confidence 6788999999999999998754
No 57
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.6e-22 Score=180.97 Aligned_cols=197 Identities=23% Similarity=0.278 Sum_probs=154.1
Q ss_pred ccccCCCeeEeeCCEEEEcCCCCCCCCCCCCcccc---CcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEE
Q 018671 12 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 88 (352)
Q Consensus 12 ~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 88 (352)
.+.+.++..++..++||||||+.++.+.+||..++ .++++...|. . .+.++|+|
T Consensus 92 ~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~----------------------~~~k~v~V 148 (305)
T COG0492 92 PFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F----------------------FKGKDVVV 148 (305)
T ss_pred eEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c----------------------ccCCeEEE
Confidence 34555555569999999999999999999875432 1222222232 1 22359999
Q ss_pred ECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhC-CCEEEeC-ceEEEEC--
Q 018671 89 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-IVKDVDS-- 164 (352)
Q Consensus 89 vGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-~V~~v~~-- 164 (352)
||||.+++|-|..|.++. .+|+++++.+-+.. .+.+.+.++++ +|+++.+ +++++.+
T Consensus 149 iGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l~~~~~i~~~~~~~i~ei~G~~ 209 (305)
T COG0492 149 IGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERLKKNVKIEVLTNTVVKEILGDD 209 (305)
T ss_pred EcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHHHhcCCeEEEeCCceeEEecCc
Confidence 999999999999999998 88999999854432 33445556665 8999999 8999988
Q ss_pred -CeEEEcCC----cEEecceEEEecCCCcc-hhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCC
Q 018671 165 -QKLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP 238 (352)
Q Consensus 165 -~~v~~~~g----~~i~~D~vi~a~G~~~~-~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~ 238 (352)
+.|.+++. +++++|-++++.|..|+ .+.+..+. ++++|+|.||+.++| +.|+|||+|||+..+ .
T Consensus 210 v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~T-svpGifAaGDv~~~~--------~ 279 (305)
T COG0492 210 VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMET-SVPGIFAAGDVADKN--------G 279 (305)
T ss_pred cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCccc-CCCCEEEeEeeccCc--------c
Confidence 47777763 26899999999999999 47777776 788999999999998 999999999999731 3
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 018671 239 ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 239 ~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+++..|..+|..+|.++.+.+.
T Consensus 280 rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 280 RQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cEEeehhhhHHHHHHHHHHHhh
Confidence 3778899999999998877664
No 58
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=179.32 Aligned_cols=193 Identities=27% Similarity=0.431 Sum_probs=159.3
Q ss_pred eeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 19 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 19 ~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...+++++.|||||.+|++|+|||..|+..+..++ |.+...|+ +-+|||+|+.++|+
T Consensus 157 ~~~~ta~~fvIatG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLEC 213 (503)
T KOG4716|consen 157 ERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALEC 213 (503)
T ss_pred eEEeecceEEEEecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeeh
Confidence 46789999999999999999999998988776443 55566776 88999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC----ceEEEECCeEE--Ec--
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG----IVKDVDSQKLI--LN-- 170 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~----~V~~v~~~~v~--~~-- 170 (352)
|+.|+.++ .+|++.-++-+|..|+.+..+.+.+.|+++||++... +|+.++..++. ..
T Consensus 214 AgFL~gfg--------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t 279 (503)
T KOG4716|consen 214 AGFLKGFG--------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNT 279 (503)
T ss_pred hhhHhhcC--------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecc
Confidence 99999988 8899988888899999999999999999999999865 46666666532 22
Q ss_pred -CCc--EEecceEEEecCCCcch---hhhhcCCCCC-CCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHH
Q 018671 171 -DGT--EVPYGLLVWSTGVGPST---LVKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 243 (352)
Q Consensus 171 -~g~--~i~~D~vi~a~G~~~~~---~~~~~~l~~~-~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~ 243 (352)
.++ +-.+|+|+||.|..+.. -+...|+..+ .+|.|.||+.-++ +.|+|||+||+.. +. |.+...
T Consensus 280 ~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~-----~k---pELTPv 350 (503)
T KOG4716|consen 280 NTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE-----DK---PELTPV 350 (503)
T ss_pred cccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec-----CC---cccchh
Confidence 222 45799999999999873 2445566554 4688999998887 9999999999985 33 778889
Q ss_pred HHHHHHHHHHHHHH
Q 018671 244 AERQGKYLFSLLNR 257 (352)
Q Consensus 244 A~~qg~~~a~~i~~ 257 (352)
|++.|+.+|+.+-.
T Consensus 351 AIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 351 AIQSGRLLARRLFA 364 (503)
T ss_pred hhhhchHHHHHHhc
Confidence 99999999998754
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.87 E-value=1e-21 Score=201.75 Aligned_cols=203 Identities=21% Similarity=0.261 Sum_probs=141.6
Q ss_pred eEeeCCEEEEcCCC-CCCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 20 FKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 20 ~~i~yD~LViAtGs-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
....||+||||||+ .|+.+++||.+ +++++ ..+.. .... +....... .......+++|+|||||++|+|
T Consensus 514 ~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~---~~~~l---~~~~--~~~~~~~~-~~~~~~~gk~VvVIGgG~~a~d 584 (752)
T PRK12778 514 EEEGFKGIFIASGAGLPNFMNIPGENSNGVMS---SNEYL---TRVN--LMDAASPD-SDTPIKFGKKVAVVGGGNTAMD 584 (752)
T ss_pred hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEE---HHHHH---HHHh--hccccccc-ccCcccCCCcEEEECCcHHHHH
Confidence 35679999999999 58888999963 22222 22222 1110 00000000 0001134579999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCcc-EEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---Ce---E
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QK---L 167 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~---v 167 (352)
+|..+.+++ . +|+++++. . .+|....++ +.+++.||+++.. .+.++.. +. |
T Consensus 585 ~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v 645 (752)
T PRK12778 585 SARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQV 645 (752)
T ss_pred HHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEE
Confidence 999998876 4 49999875 2 344432222 3467889999987 6666642 11 3
Q ss_pred EEc---------CC-----------cEEecceEEEecCCCcch-hhhhc-CCCCCCCCccccCCccccCCCCCEEEEccc
Q 018671 168 ILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSL-DLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 225 (352)
Q Consensus 168 ~~~---------~g-----------~~i~~D~vi~a~G~~~~~-~~~~~-~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~ 225 (352)
.+. +| .++++|+||+|+|+.|+. +.... +++++++|+|.||+++++ +.|+|||+|||
T Consensus 646 ~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~ 724 (752)
T PRK12778 646 VLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS-SIPGIYAGGDI 724 (752)
T ss_pred EEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCC-CCCCEEEeCCc
Confidence 331 12 259999999999999995 44443 677888899999999987 99999999999
Q ss_pred cccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 226 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 226 a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+. | +.++..|+.+|+.+|.+|.+.+.
T Consensus 725 ~~-----g----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 725 VR-----G----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred cC-----C----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 85 2 66889999999999999998764
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.87 E-value=6.2e-21 Score=196.39 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=152.9
Q ss_pred EeeCCEEEEcCCCCC-CCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
...||+||||||+.+ ..+++||..+++ +..++....+... ......+++|+|||||++|+|+|
T Consensus 619 ~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~avefL~~~~~~--------------~~~~~~GK~VVVIGGGnvAmD~A 682 (1012)
T TIGR03315 619 NQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLEFLRAFKEG--------------PTINPLGKHVVVVGGGNTAMDAA 682 (1012)
T ss_pred cccccEEEECCCCCCCCCCCcCCCCcce--eeHHHHHHHhhcc--------------ccccccCCeEEEECCCHHHHHHH
Confidence 457999999999984 445778753322 2222222221110 00112357999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCeEEE-------
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLIL------- 169 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~------- 169 (352)
..+.+.. ...+|+++.+. ..+|...+++.+ . .+.||+++.. .+.+++++.+.+
T Consensus 683 r~a~Rl~------------Ga~kVtLVyRr~~~~Mpa~~eEl~~----a-leeGVe~~~~~~p~~I~~g~l~v~~~~l~~ 745 (1012)
T TIGR03315 683 RAALRVP------------GVEKVTVVYRRTKRYMPASREELEE----A-LEDGVDFKELLSPESFEDGTLTCEVMKLGE 745 (1012)
T ss_pred HHHHHhC------------CCceEEEEEccCccccccCHHHHHH----H-HHcCCEEEeCCceEEEECCeEEEEEEEeec
Confidence 8877641 01489999875 356665554432 2 3569999887 677776443322
Q ss_pred ----------cCCc--EEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCc-cccCCCCCEEEEccccccccCCCCc
Q 018671 170 ----------NDGT--EVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKT 235 (352)
Q Consensus 170 ----------~~g~--~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~-l~~~~~~~IfaiGD~a~~~~~~~~~ 235 (352)
.+|+ ++++|+||+|+|..|+. +++.++++++++|++.||++ +++ +.|+|||+|||+..
T Consensus 746 ~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~G------- 817 (1012)
T TIGR03315 746 PDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGET-NITNVFVIGDANRG------- 817 (1012)
T ss_pred ccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCC-------
Confidence 1233 68999999999999984 77888888888999999985 776 89999999999851
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhCCCCC-CCcccCCCCCCceeeccceEEEecC
Q 018671 236 VLPALAQVAERQGKYLFSLLNRIGKAGGGRA-NSAKDMELGDPFVYRHLGSMATIGR 291 (352)
Q Consensus 236 ~~~~~~~~A~~qg~~~a~~i~~~~~~~~g~~-~~~~~~~~~~~f~~~~~g~~~~lG~ 291 (352)
|.++..|+.||+.||.+|.+......... ..........+|.|...|.+...+.
T Consensus 818 --P~tVv~AIaqGr~AA~nIl~~~~~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~~ 872 (1012)
T TIGR03315 818 --PATIVEAIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKKGILVIDDH 872 (1012)
T ss_pred --ccHHHHHHHHHHHHHHHHhccccCCcccccccccccccccchhhccCcceeccCc
Confidence 77899999999999999976432111000 0000001125778888888876543
No 61
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.87 E-value=2.2e-21 Score=174.74 Aligned_cols=191 Identities=25% Similarity=0.366 Sum_probs=153.2
Q ss_pred CCCeeEeeCCEEEEcCCCC-CCCCCCCCc--cc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECC
Q 018671 16 EPWKFKISYDKLVIALGAE-ASTFGIHGV--KE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 91 (352)
Q Consensus 16 ~~~~~~i~yD~LViAtGs~-~~~~~ipG~--~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGg 91 (352)
+++...+...++||||||. +.+ ||+ ++ ...+. ..| +.+.+.| ++++|||+
T Consensus 166 dg~~~ii~aKnIiiATGSeV~~~---PGI~IDekkIVSS---tgA----------LsL~~vP----------k~~~viG~ 219 (506)
T KOG1335|consen 166 DGEDQIIKAKNIIIATGSEVTPF---PGITIDEKKIVSS---TGA----------LSLKEVP----------KKLTVIGA 219 (506)
T ss_pred CCCceEEeeeeEEEEeCCccCCC---CCeEecCceEEec---CCc----------cchhhCc----------ceEEEEcC
Confidence 3455788999999999995 444 565 22 22211 222 2223334 39999999
Q ss_pred ChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----
Q 018671 92 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---- 165 (352)
Q Consensus 92 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~---- 165 (352)
|.+|+|++.-..+++ .+||+++.. .+.+.++.++++.+++.|.++|++++++ +|..++.+
T Consensus 220 G~IGLE~gsV~~rLG--------------seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~ 285 (506)
T KOG1335|consen 220 GYIGLEMGSVWSRLG--------------SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGP 285 (506)
T ss_pred ceeeeehhhHHHhcC--------------CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCc
Confidence 999999999999988 999999986 7889999999999999999999999999 78888764
Q ss_pred -eEEEc---CC--cEEecceEEEecCCCcch---hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcC
Q 018671 166 -KLILN---DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 236 (352)
Q Consensus 166 -~v~~~---~g--~~i~~D~vi~a~G~~~~~---~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~ 236 (352)
.|++. ++ ++++||.+++++|.+|-. -+++.|++.|++|++.||+.+++ .+|+||+|||+.. |
T Consensus 286 v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~-----g--- 356 (506)
T KOG1335|consen 286 VEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTL-----G--- 356 (506)
T ss_pred eEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccCC-----c---
Confidence 23443 23 479999999999999974 35667888899999999999998 9999999999995 2
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 018671 237 LPALAQVAERQGKYLFSLLN 256 (352)
Q Consensus 237 ~~~~~~~A~~qg~~~a~~i~ 256 (352)
|.+++.|..||-.+.+.|.
T Consensus 357 -pMLAhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 357 -PMLAHKAEEEGIAAVEGIA 375 (506)
T ss_pred -chhhhhhhhhchhheeeec
Confidence 8999999999988887664
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.87 E-value=9.5e-21 Score=184.85 Aligned_cols=208 Identities=22% Similarity=0.278 Sum_probs=141.0
Q ss_pred EeeCCEEEEcCCCC-CCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...||+||||||+. ++.+++||.+ .++++. .+........+ +.....+ ......++|+|||||++|+|+
T Consensus 226 ~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~--~~~l~~~~~~~---~~~~~~~----~~~~~gk~VvVIGgG~~g~e~ 296 (471)
T PRK12810 226 LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFA--MDFLIQNTRRV---LGDETEP----FISAKGKHVVVIGGGDTGMDC 296 (471)
T ss_pred HhhCCEEEEecCCCCCCcCCCCCccCCCcEEH--HHHHHHHHhhh---ccccccc----cccCCCCEEEEECCcHHHHHH
Confidence 35799999999997 7778899963 222221 11111110111 0000000 011235799999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCc------HH-HHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE-
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD------DR-LRHYATTQLSKSGVRLVRG-IVKDVDS--QKL- 167 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~------~~-~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v- 167 (352)
|..+.+.+. .+|++++......... +. ......+.+++.||+++++ .++++.. +.|
T Consensus 297 A~~~~~~ga-------------~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~ 363 (471)
T PRK12810 297 VGTAIRQGA-------------KSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVT 363 (471)
T ss_pred HHHHHHcCC-------------CeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEE
Confidence 988877651 4788766543211100 00 0111345677889999998 7888863 222
Q ss_pred --E-----EcCC---------cEEecceEEEecCCCcc-h-hhhhcCCCCCCCCccccC-CccccCCCCCEEEEcccccc
Q 018671 168 --I-----LNDG---------TEVPYGLLVWSTGVGPS-T-LVKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSGY 228 (352)
Q Consensus 168 --~-----~~~g---------~~i~~D~vi~a~G~~~~-~-~~~~~~l~~~~~G~i~Vd-~~l~~~~~~~IfaiGD~a~~ 228 (352)
. +.+| +++++|.||+++|.+|+ . ++..++++.+++|++.+| +++++ +.|+|||+|||+.
T Consensus 364 ~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~- 441 (471)
T PRK12810 364 GVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQT-SNPKVFAAGDMRR- 441 (471)
T ss_pred EEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccC-CCCCEEEccccCC-
Confidence 2 2222 47999999999999997 3 777888888888999998 68997 9999999999995
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 229 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 229 ~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+ +.++..|+.||+.+|.+|...+.
T Consensus 442 ----g----~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 442 ----G----QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ----C----chhHHHHHHHHHHHHHHHHHHHh
Confidence 1 55788999999999999998875
No 63
>PRK13984 putative oxidoreductase; Provisional
Probab=99.86 E-value=1.5e-20 Score=188.95 Aligned_cols=204 Identities=18% Similarity=0.216 Sum_probs=132.8
Q ss_pred EeeCCEEEEcCCCC-CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
...||+||||||+. ++.+++||.... ..+...+....+...+ .... ......++|+|||||++|+|+|
T Consensus 366 ~~~yD~vilAtGa~~~r~l~i~G~~~~-gv~~a~~~l~~~~~~~----~~~~------~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 366 REKHDAVFLSTGFTLGRSTRIPGTDHP-DVIQALPLLREIRDYL----RGEG------PKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred HhcCCEEEEEcCcCCCccCCCCCcCCc-CeEeHHHHHHHHHhhh----ccCC------CcCCCCCcEEEECCchHHHHHH
Confidence 45799999999987 677889996321 1122333333332221 1000 0011246999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC---CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEc
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILN 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~ 170 (352)
..+.+++... + ...+|+++... ..++....++ .+ +.+.||+++.+ .++++.. + .|.+.
T Consensus 435 ~~l~r~~~~~----~----g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~ 501 (604)
T PRK13984 435 RSMARLQKME----Y----GEVNVKVTSLERTFEEMPADMEEI----EE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFK 501 (604)
T ss_pred HHHHhccccc----c----CceEEEEeccccCcccCCCCHHHH----HH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEE
Confidence 9998764110 0 11467776433 2334333222 22 34679999987 5666642 2 12221
Q ss_pred --------C-----------CcEEecceEEEecCCCcch-hhh-hc--CCCCCCCCccccCCccccCCCCCEEEEccccc
Q 018671 171 --------D-----------GTEVPYGLLVWSTGVGPST-LVK-SL--DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 227 (352)
Q Consensus 171 --------~-----------g~~i~~D~vi~a~G~~~~~-~~~-~~--~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~ 227 (352)
+ ++++++|.||+++|++|+. ++. .+ ++.. .+|+|.||+++|+ +.|+|||+|||+.
T Consensus 502 ~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~ 579 (604)
T PRK13984 502 KCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVH 579 (604)
T ss_pred EEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCC
Confidence 1 2369999999999999984 443 22 3444 4688999999998 9999999999996
Q ss_pred cccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 228 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 228 ~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
. + ....|+.+|+.+|++|...+.
T Consensus 580 ~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 580 G---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred c---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 2 3 357899999999999998764
No 64
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.86 E-value=1.8e-20 Score=189.12 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=139.4
Q ss_pred eeCCEEEEcCCCCC-CCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 22 ISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 22 i~yD~LViAtGs~~-~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..||+||||||+.+ ..+++||.+. +++ .+..+.... ... .....+++|+|||||++|+|+|
T Consensus 277 ~~~DaVilAtGa~~~~~~~ipG~~~~gv~------~~~~~l~~~----~~~-------~~~~~gk~VvVIGgG~~a~e~A 339 (652)
T PRK12814 277 KEFDAVLLAVGAQKASKMGIPGEELPGVI------SGIDFLRNV----ALG-------TALHPGKKVVVIGGGNTAIDAA 339 (652)
T ss_pred hhcCEEEEEcCCCCCCCCCCCCcCcCCcE------eHHHHHHHh----hcC-------CcccCCCeEEEECCCHHHHHHH
Confidence 45999999999985 4678898532 121 111111111 000 0113457999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE--E---E
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--I---L 169 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v--~---~ 169 (352)
..+.+++. .+|+++.+. ..+|..+.++. +. .+.||+++.+ .+.++.. +.+ . +
T Consensus 340 ~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~----~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~ 401 (652)
T PRK12814 340 RTALRLGA-------------ESVTILYRRTREEMPANRAEIE----EA-LAEGVSLRELAAPVSIERSEGGLELTAIKM 401 (652)
T ss_pred HHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH----HH-HHcCCcEEeccCcEEEEecCCeEEEEEEEE
Confidence 99887651 479999875 35665544432 22 3569999988 6777653 222 1 1
Q ss_pred c---------------CCc--EEecceEEEecCCCcch-hhhhcCCCCCCCCccccCC-ccccCCCCCEEEEcccccccc
Q 018671 170 N---------------DGT--EVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDCSGYLE 230 (352)
Q Consensus 170 ~---------------~g~--~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~-~l~~~~~~~IfaiGD~a~~~~ 230 (352)
. +|+ ++++|.||+++|..|+. ++...+++.+.+|++.||+ ++++ +.|+|||+|||+..
T Consensus 402 ~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g-- 478 (652)
T PRK12814 402 QQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQT-SVAGVFAGGDCVTG-- 478 (652)
T ss_pred EecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcC-CCCCEEEcCCcCCC--
Confidence 1 122 58999999999999995 7777888888889999997 5666 99999999999852
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 231 STGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 231 ~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+.++..|+.||+.+|.+|.+.+.
T Consensus 479 -------~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 479 -------ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHc
Confidence 66789999999999999999886
No 65
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-21 Score=175.81 Aligned_cols=221 Identities=19% Similarity=0.275 Sum_probs=170.9
Q ss_pred cccccCCCeeEeeCCEEEEcCCCCCCCCC-CCC----ccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCc
Q 018671 11 ELRTLEPWKFKISYDKLVIALGAEASTFG-IHG----VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 85 (352)
Q Consensus 11 ~~~~~~~~~~~i~yD~LViAtGs~~~~~~-ipG----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
+..+...+|.+|.||.++||||.+|...+ +.- +.+....++.+.|..++..-+. ..++
T Consensus 287 d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~a-----------------ek~s 349 (659)
T KOG1346|consen 287 DKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLA-----------------EKQS 349 (659)
T ss_pred cCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhh-----------------hcce
Confidence 44567889999999999999999987643 222 2344566777888877765432 1259
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC-C-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-N-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
|.|||+|..|.|+|+.|.+..+. .+.+|+-+-. . ..-.-+++-+++...+.+++.||.++.+ .|.++
T Consensus 350 iTIiGnGflgSELacsl~rk~r~----------~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv 419 (659)
T KOG1346|consen 350 ITIIGNGFLGSELACSLKRKYRN----------EGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESV 419 (659)
T ss_pred EEEEcCcchhhhHHHHHHHhhhc----------cCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhh
Confidence 99999999999999999876521 3477775533 2 2223345678888899999999999999 78777
Q ss_pred ECC----eEEEcCCcEEecceEEEecCCCcch-hhhhcCCCCCCC-CccccCCccccCCCCCEEEEccccccccCCCCcC
Q 018671 163 DSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 236 (352)
Q Consensus 163 ~~~----~v~~~~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~-G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~ 236 (352)
... .+.++||.++..|+|++|+|..||. +.+.++|+.|++ |.+.||..|+. ..|||++||++.+.++.-+..
T Consensus 420 ~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrR 497 (659)
T KOG1346|consen 420 RKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRR 497 (659)
T ss_pred hhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecchhhhhcccccce
Confidence 553 4677899999999999999999995 888889998865 88999999986 689999999999877543344
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhh
Q 018671 237 LPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 237 ~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
......+|.-.|+.++.|+....+
T Consensus 498 RVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 498 RVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred eccccccceeeceecccccccccC
Confidence 566777899999999999976543
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.83 E-value=2.9e-19 Score=185.54 Aligned_cols=205 Identities=17% Similarity=0.211 Sum_probs=139.2
Q ss_pred EeeCCEEEEcCCCC-CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
...||+||||||+. |+.+++||.+ ...+.+..+.....+... ... .... .+.....+++|+|||||.+|+++|
T Consensus 390 ~~~yDAV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~~~~~~~-~~~-~~~~--~~~~~~~Gk~VvVIGGG~tA~D~A 463 (944)
T PRK12779 390 AAGFWKIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLTRVNLMR-GLD-DDYE--TPLPEVKGKEVFVIGGGNTAMDAA 463 (944)
T ss_pred cccCCEEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHHHHHhhc-ccc-cccc--ccccccCCCEEEEECCCHHHHHHH
Confidence 45799999999995 8889999952 112222222221111100 000 0000 000012457999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eE---EE
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KL---IL 169 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v---~~ 169 (352)
..+.+++ .+|+++.+. ..+|....++ .+ ..+.||+++.. .++++..+ .| .+
T Consensus 464 ~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~ 524 (944)
T PRK12779 464 RTAKRLG--------------GNVTIVYRRTKSEMPARVEEL----HH-ALEEGINLAVLRAPREFIGDDHTHFVTHALL 524 (944)
T ss_pred HHHHHcC--------------CEEEEEEecCcccccccHHHH----HH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEE
Confidence 9999877 789999875 2444333332 22 34579999887 67777432 12 11
Q ss_pred ---------c--------CC--cEEecceEEEecCCCcchhhh--hcCCCCCCCCccccCC-ccccCCCCCEEEEccccc
Q 018671 170 ---------N--------DG--TEVPYGLLVWSTGVGPSTLVK--SLDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDCSG 227 (352)
Q Consensus 170 ---------~--------~g--~~i~~D~vi~a~G~~~~~~~~--~~~l~~~~~G~i~Vd~-~l~~~~~~~IfaiGD~a~ 227 (352)
. +| .++++|+||+|+|+.|++.+. ..+++.+++|.|.||+ +++| +.|+|||+|||+.
T Consensus 525 ~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~ 603 (944)
T PRK12779 525 DVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAAR 603 (944)
T ss_pred EEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCC
Confidence 1 22 369999999999999996433 3467778889999997 5676 8999999999995
Q ss_pred cccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 228 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 228 ~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
| +.++..|+.+|+.||.+|...+.
T Consensus 604 -----G----~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 604 -----G----GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred -----C----hHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 56889999999999999988765
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.83 E-value=3.4e-19 Score=173.48 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=139.4
Q ss_pred eeCCEEEEcCCCCCC-CCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 22 ISYDKLVIALGAEAS-TFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 22 i~yD~LViAtGs~~~-~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..||.||+|||+.+. .+++||.+. ++++. -+......+.. +.....+... ......++++|||+|.+|+++|
T Consensus 225 ~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a---~~~l~~~~~~~--~~~~~~~~~~-~~~~~gk~VvVIGgG~~a~d~A 298 (467)
T TIGR01318 225 EDYDAVFLGVGTYRSMRGGLPGEDAPGVLQA---LPFLIANTRQL--MGLPESPEEP-LIDVEGKRVVVLGGGDTAMDCV 298 (467)
T ss_pred hcCCEEEEEeCCCCCCcCCCCCcCCCCcEEH---HHHHHHHHHHh--cCCCcccccc-ccccCCCEEEEECCcHHHHHHH
Confidence 479999999999864 467898632 22221 11111000000 0000000000 0012347999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---Ce---EEEc
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QK---LILN 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~---v~~~ 170 (352)
..+.+++. .+|+++++. . .++..+.++ +.+++.||+++.+ .++++.. +. |++.
T Consensus 299 ~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~ 360 (467)
T TIGR01318 299 RTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLV 360 (467)
T ss_pred HHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEE
Confidence 99887751 479999875 3 455544332 4467889999998 7888753 12 2221
Q ss_pred ---------C---------C--cEEecceEEEecCCCcch--hhhhcCCCCCCCCccccC----CccccCCCCCEEEEcc
Q 018671 171 ---------D---------G--TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGID----EWLRVPSVQDVFAVGD 224 (352)
Q Consensus 171 ---------~---------g--~~i~~D~vi~a~G~~~~~--~~~~~~l~~~~~G~i~Vd----~~l~~~~~~~IfaiGD 224 (352)
+ | .++++|.||+++|++|+. ++..++++.+++|++.|| +++++ +.|+|||+||
T Consensus 361 ~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD 439 (467)
T TIGR01318 361 RTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQT-TNPKIFAGGD 439 (467)
T ss_pred EEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccC-CCCCEEEECC
Confidence 1 1 369999999999999973 667778888888999999 57887 8999999999
Q ss_pred ccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHh
Q 018671 225 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
|+.. +.++..|+.+|+.+|.+|.+.+
T Consensus 440 ~~~~---------~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 440 AVRG---------ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred cCCC---------ccHHHHHHHHHHHHHHHHHHHh
Confidence 9852 5577899999999999998765
No 68
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.81 E-value=9.3e-19 Score=171.11 Aligned_cols=210 Identities=23% Similarity=0.266 Sum_probs=133.5
Q ss_pred EeeCCEEEEcCCCC-CCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs~-~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...||.||+|||+. |..+++||.+. +++.. -+...-.+... ........ ......+++|+|||||++|+|+
T Consensus 226 ~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~---~~~l~~~~~~~---~~~~~~~~-~~~~~~gk~VvViGgG~~g~d~ 298 (485)
T TIGR01317 226 KEQFDAVVLAGGATKPRDLPIPGRELKGIHYA---MEFLPSATKAL---LGKDFKDI-IFIKAKGKKVVVIGGGDTGADC 298 (485)
T ss_pred HhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH---HHHHHHHhhhh---cccccccc-ccccCCCCEEEEECCcHHHHHH
Confidence 45799999999998 88889999632 22221 11111001100 00000000 0011345799999999999999
Q ss_pred HHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC---------CCcHH--HHHHHHHHHHhCCCEE-EeC-ceEEEEC
Q 018671 99 SGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------SFDDR--LRHYATTQLSKSGVRL-VRG-IVKDVDS 164 (352)
Q Consensus 99 A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~---------~~~~~--~~~~~~~~l~~~gV~v-~~~-~V~~v~~ 164 (352)
|..+.+.+. .+|++++.. ..+. .++.. .....++..+..||++ +.. .+.++..
T Consensus 299 a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~ 365 (485)
T TIGR01317 299 VGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIG 365 (485)
T ss_pred HHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEE
Confidence 887776551 589999865 3322 11111 2222334344457654 333 4555532
Q ss_pred C---e---EEE--------cCC-----------cEEecceEEEecCCC-cc-hhhhhcCCCCCCCCcccc-CCccccCCC
Q 018671 165 Q---K---LIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKSPGGRIGI-DEWLRVPSV 216 (352)
Q Consensus 165 ~---~---v~~--------~~g-----------~~i~~D~vi~a~G~~-~~-~~~~~~~l~~~~~G~i~V-d~~l~~~~~ 216 (352)
+ . +.+ ++| .++++|+||+++|+. |+ .++..++++++++|++.+ |+++++ +.
T Consensus 366 ~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~T-s~ 444 (485)
T TIGR01317 366 DDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYST-SI 444 (485)
T ss_pred cCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceE-CC
Confidence 1 1 221 123 269999999999996 66 477778888888898855 567887 99
Q ss_pred CCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 217 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 217 ~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|+|||+|||+. + +.++..|+.+|+.+|.+|.+.+.
T Consensus 445 ~gVfAaGD~~~-----g----~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 445 PGVFAAGDCRR-----G----QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCEEEeeccCC-----C----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999985 1 56788999999999999999876
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.81 E-value=1.6e-18 Score=175.62 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=139.1
Q ss_pred eeCCEEEEcCCCCC-CCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 22 ISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 22 i~yD~LViAtGs~~-~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..||.|++|||+.. ..+++||... +++.. .+........+ +....... .+.....+++|+|||||++|+++|
T Consensus 411 ~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a--~~~l~~~~~~~---~~~~~~~~-~~~~~~~gk~VvVIGgG~~a~d~A 484 (654)
T PRK12769 411 EDYDAVFVGVGTYRSMKAGLPNEDAPGVYDA--LPFLIANTKQV---MGLEELPE-EPFINTAGLNVVVLGGGDTAMDCV 484 (654)
T ss_pred hcCCEEEEeCCCCCCCCCCCCCCCCCCeEEh--HHHHHHHHhhh---ccCccccc-cccccCCCCeEEEECCcHHHHHHH
Confidence 46999999999874 4567888632 22211 11111100000 00000000 000012357999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---Ce---EEE-
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QK---LIL- 169 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~---v~~- 169 (352)
..+.+.+. .+|+++.+. . .+|..+.. .+.+++.||+++++ .++++.. +. |.+
T Consensus 485 ~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~ 546 (654)
T PRK12769 485 RTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFL 546 (654)
T ss_pred HHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEE
Confidence 98777651 479998875 3 35544332 34578889999988 6777742 22 333
Q ss_pred --------cCC---------c--EEecceEEEecCCCcch--hhhhcCCCCCCCCccccCC----ccccCCCCCEEEEcc
Q 018671 170 --------NDG---------T--EVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE----WLRVPSVQDVFAVGD 224 (352)
Q Consensus 170 --------~~g---------~--~i~~D~vi~a~G~~~~~--~~~~~~l~~~~~G~i~Vd~----~l~~~~~~~IfaiGD 224 (352)
.+| + ++++|+||+++|+.|+. +++.++++++++|.|.||+ +++| +.|+|||+||
T Consensus 547 ~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD 625 (654)
T PRK12769 547 RTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQT-SNPKIFAGGD 625 (654)
T ss_pred EEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCccc-CCCCEEEcCC
Confidence 112 2 59999999999999983 6777888888899999986 4787 9999999999
Q ss_pred ccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 225 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|+.. +.+...|+.+|+.+|++|...+.
T Consensus 626 ~~~g---------~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 626 AVRG---------ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCC---------CcHHHHHHHHHHHHHHHHHHHhC
Confidence 9851 66788999999999999988764
No 70
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.80 E-value=1.5e-18 Score=153.13 Aligned_cols=225 Identities=17% Similarity=0.223 Sum_probs=157.5
Q ss_pred cccccCCCeeEeeCCEEEEcCCCCCCCCCCCCccc-----cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCc
Q 018671 11 ELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-----NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 85 (352)
Q Consensus 11 ~~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (352)
++.+++.+|++|+|||||||+|.+.++..|+|+.| .+.+.++...+.+....+. ++.. +..
T Consensus 121 ~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~-~fk~-------------GNA 186 (446)
T KOG3851|consen 121 KNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELM-NFKK-------------GNA 186 (446)
T ss_pred cCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHH-hccC-------------Cce
Confidence 45567788899999999999999999999999854 4556677777766666542 2211 112
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEE
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 163 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~ 163 (352)
|--.-.+++-|.-|-.-.-+..+.++++.+ .++..+|+.-+.- .++. -....+.+++..++++|++... .+.+|.
T Consensus 187 IfTfPntpiKCAGAPQKi~yise~y~Rk~g-vRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~ 263 (446)
T KOG3851|consen 187 IFTFPNTPIKCAGAPQKIMYISESYFRKRG-VRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVR 263 (446)
T ss_pred EEecCCCccccCCCchhhhhhhHHHHHHhC-ccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEe
Confidence 222223333333222222222222233222 2333565555543 3432 2466778888889999999887 677776
Q ss_pred CC--eEEEc---C-C--cEEecceEEEecCCCcchhhhhcCCCCCCCCccccCC-ccccCCCCCEEEEccccccccCCCC
Q 018671 164 SQ--KLILN---D-G--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDCSGYLESTGK 234 (352)
Q Consensus 164 ~~--~v~~~---~-g--~~i~~D~vi~a~G~~~~~~~~~~~l~~~~~G~i~Vd~-~l~~~~~~~IfaiGD~a~~~~~~~~ 234 (352)
.+ ..+|+ + | ++++++++.+.+..++++++..+.+ .|+.|++.||. +||+..+||||+||||.+.|+
T Consensus 264 ~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pn---- 338 (446)
T KOG3851|consen 264 TNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPN---- 338 (446)
T ss_pred ccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcc-cCcccceecChhhhccccCCCceeeccccCCCc----
Confidence 54 33333 2 4 4799999999999999999999886 47889999996 999999999999999998644
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 235 TVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 235 ~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.+++..+..|..++-+|+...++
T Consensus 339 ---sKTaAAvaaq~~vv~~nl~~~m~ 361 (446)
T KOG3851|consen 339 ---SKTAAAVAAQSPVVDKNLTQVMQ 361 (446)
T ss_pred ---hhhHHHHHhcCchhhhhHHHHhc
Confidence 78888888999999999999886
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.80 E-value=1.3e-18 Score=182.25 Aligned_cols=203 Identities=15% Similarity=0.164 Sum_probs=138.0
Q ss_pred eeCCEEEEcCCCC-CCCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 22 ISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 22 i~yD~LViAtGs~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
..||+||||||+. |+.++|||.. +++++. .+.....+. ......+.. ......+++|+|||||++|+++|
T Consensus 516 ~~yDaViIATGa~~pr~l~IpG~~l~gV~~a---~~fL~~~~~----~~~~~~~~~-~~~~~~Gk~VvVIGgG~tA~D~A 587 (1006)
T PRK12775 516 KGFDAVFLGVGAGAPTFLGIPGEFAGQVYSA---NEFLTRVNL----MGGDKFPFL-DTPISLGKSVVVIGAGNTAMDCL 587 (1006)
T ss_pred cCCCEEEEecCCCCCCCCCCCCcCCCCcEEH---HHHHHHHHh----cCccccccc-cCCccCCCEEEEECCcHHHHHHH
Confidence 4699999999995 8889999952 222222 222111110 000000000 00112457999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---Ce---EEEc
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QK---LILN 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~---v~~~ 170 (352)
..+.+++. ..|+++.+. .-+|....+ .+.+++.||+++.. .++++.. +. |.+.
T Consensus 588 ~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~ 649 (1006)
T PRK12775 588 RVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVE 649 (1006)
T ss_pred HHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEE
Confidence 88887762 468888764 233332222 24567789999988 6777642 22 2221
Q ss_pred -----------------CC--cEEecceEEEecCCCcch-hhhh-cCCCCCCCCccccCC-----ccccCCCCCEEEEcc
Q 018671 171 -----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-----WLRVPSVQDVFAVGD 224 (352)
Q Consensus 171 -----------------~g--~~i~~D~vi~a~G~~~~~-~~~~-~~l~~~~~G~i~Vd~-----~l~~~~~~~IfaiGD 224 (352)
+| .++++|+||++.|+.|+. ++.. .++.++++|.|.+|+ +++| +.|+|||+||
T Consensus 650 ~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGD 728 (1006)
T PRK12775 650 EMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST-NLPGVFAGGD 728 (1006)
T ss_pred EEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC-CCCCEEEecC
Confidence 12 269999999999999995 4333 367778889999996 6777 9999999999
Q ss_pred ccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 225 CSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|+. | +.++..|+.+|+.+|.+|...+.
T Consensus 729 v~~-----G----~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 729 IVT-----G----GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred cCC-----C----ccHHHHHHHHHHHHHHHHHHHHh
Confidence 985 2 67889999999999999999886
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.79 E-value=8.8e-18 Score=169.53 Aligned_cols=205 Identities=18% Similarity=0.157 Sum_probs=138.9
Q ss_pred EeeCCEEEEcCCCCC-CCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHH-hhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 21 KISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 21 ~i~yD~LViAtGs~~-~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
...||.|++|||+.+ ..+++||.+. +.+. +..+.......+ ....... .+.....+++|+|||+|.++++
T Consensus 393 ~~~~DaV~latGa~~~~~~~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~~~-~~~~~~~gk~vvViGgG~~a~d 465 (639)
T PRK12809 393 TSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ------ALPFLTAHTRQLMGLPESEE-YPLTDVEGKRVVVLGGGDTTMD 465 (639)
T ss_pred HhcCCEEEEeCCCCCCCCCCCCCCccCCcEe------HHHHHHHHHHhhccCccccc-cccccCCCCeEEEECCcHHHHH
Confidence 457999999999974 4567888532 2211 111111110000 0000000 0001124579999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC---CeE---E
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QKL---I 168 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~---~~v---~ 168 (352)
+|..+.+++. .+|+++.+. . .+|....++. .+++.||++++. .++++.. +.| .
T Consensus 466 ~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~ 527 (639)
T PRK12809 466 CLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVG 527 (639)
T ss_pred HHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEE
Confidence 9988776651 479999875 3 3555444332 356789999988 6888752 222 2
Q ss_pred E---c------CC-----------cEEecceEEEecCCCcch--hhhhcCCCCCCCCccccCC----ccccCCCCCEEEE
Q 018671 169 L---N------DG-----------TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE----WLRVPSVQDVFAV 222 (352)
Q Consensus 169 ~---~------~g-----------~~i~~D~vi~a~G~~~~~--~~~~~~l~~~~~G~i~Vd~----~l~~~~~~~Ifai 222 (352)
+ . +| .++++|+||+++|+.|+. ++..++++++++|++.||+ ++|+ +.|+|||+
T Consensus 528 ~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T-s~~gVfA~ 606 (639)
T PRK12809 528 LIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQT-HLKKVFAG 606 (639)
T ss_pred EEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCccc-CCCCEEEc
Confidence 1 1 12 268999999999999973 6677788888889999985 4777 89999999
Q ss_pred ccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 223 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 223 GD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|||+.. +.+...|+.+|+.+|++|...+.
T Consensus 607 GD~~~g---------~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 607 GDAVHG---------ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCCCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence 999851 56788999999999999998875
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.74 E-value=1.3e-16 Score=159.15 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=134.5
Q ss_pred eCCEEEEcCCCCC-CCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHHHH
Q 018671 23 SYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 101 (352)
Q Consensus 23 ~yD~LViAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~ 101 (352)
.||++|+|||+.+ ....++|..... .+ .+..+..... ... .....++|+|||+|.++++.|..
T Consensus 222 ~~D~Vi~AtG~~~~~~~~i~g~~~~g-v~----~~~~~l~~~~-~~~----------~~~~gk~v~ViGgg~~a~d~a~~ 285 (564)
T PRK12771 222 EFDAVFVAIGAQLGKRLPIPGEDAAG-VL----DAVDFLRAVG-EGE----------PPFLGKRVVVIGGGNTAMDAART 285 (564)
T ss_pred hCCEEEEeeCCCCCCcCCCCCCccCC-cE----EHHHHHHHhh-ccC----------CcCCCCCEEEECChHHHHHHHHH
Confidence 5999999999874 445778753211 11 1111111110 000 11234699999999999999987
Q ss_pred HHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCe----------EE
Q 018671 102 LSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK----------LI 168 (352)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~----------v~ 168 (352)
+.+++. .+|+++.+. ..++.....+ +...+.||+++++ .+.++..+. +.
T Consensus 286 a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~ 347 (564)
T PRK12771 286 ARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVE 347 (564)
T ss_pred HHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEE
Confidence 776651 578888775 2345443333 2345679999988 788886532 11
Q ss_pred E----cC-------C--cEEecceEEEecCCCcch-hhhh-cCCCCCCCCccccCC-ccccCCCCCEEEEccccccccCC
Q 018671 169 L----ND-------G--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDCSGYLEST 232 (352)
Q Consensus 169 ~----~~-------g--~~i~~D~vi~a~G~~~~~-~~~~-~~l~~~~~G~i~Vd~-~l~~~~~~~IfaiGD~a~~~~~~ 232 (352)
+ ++ | .++++|+||+++|+.|+. ++.+ .++. +++|++.||+ ++++ +.|+|||+|||+.
T Consensus 348 ~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~----- 420 (564)
T PRK12771 348 KMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMT-GRPGVFAGGDMVP----- 420 (564)
T ss_pred ecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccC-CCCCEEeccCcCC-----
Confidence 1 12 2 379999999999999984 6664 5676 7789999998 5655 9999999999985
Q ss_pred CCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 233 GKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 233 ~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+ |+++..|+.||+.+|.+|.+.+.
T Consensus 421 g----~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 421 G----PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred C----chHHHHHHHHHHHHHHHHHHHHc
Confidence 1 67899999999999999999876
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.72 E-value=3.4e-16 Score=164.76 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=133.2
Q ss_pred EeeCCEEEEcCCCCCCCCCCCCccc-cCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
++.||+||||||+.++.+++||... .++.... +..+... .. ...+++|+|||+|++|+|+|
T Consensus 272 ~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~---~~~~l~~-------~~--------~~~gk~VvViG~G~~g~e~A 333 (985)
T TIGR01372 272 RIRAKRVVLATGAHERPLVFANNDRPGVMLAGA---ARTYLNR-------YG--------VAPGKRIVVATNNDSAYRAA 333 (985)
T ss_pred EEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchH---HHHHHHh-------hC--------cCCCCeEEEECCCHHHHHHH
Confidence 6899999999999999999999732 3333222 1111110 00 11236999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEc----
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---- 170 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~---- 170 (352)
..|++.+. ..|++++..+.+ ...+.+.|++.||+++++ .|+++.++ .|.+.
T Consensus 334 ~~L~~~G~-------------~vV~vv~~~~~~-------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g 393 (985)
T TIGR01372 334 ADLLAAGI-------------AVVAIIDARADV-------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGG 393 (985)
T ss_pred HHHHHcCC-------------ceEEEEccCcch-------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCC
Confidence 99998761 357888765311 234567789999999999 78888765 35554
Q ss_pred CCcEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHH
Q 018671 171 DGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 171 ~g~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~ 249 (352)
+++++++|.|+++.|.+|+. +...++....-+... ..+...++.|+||++|||+. ...+..|+.+|+
T Consensus 394 ~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~~~t~v~gVyaaGD~~g----------~~~~~~A~~eG~ 461 (985)
T TIGR01372 394 AGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFLPGDAVQGCILAGAANG----------LFGLAAALADGA 461 (985)
T ss_pred ceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc--CceecCCCCCCeEEeeccCC----------ccCHHHHHHHHH
Confidence 45689999999999999995 777666543211100 01112236899999999995 446778999999
Q ss_pred HHHHHHHHHh
Q 018671 250 YLFSLLNRIG 259 (352)
Q Consensus 250 ~~a~~i~~~~ 259 (352)
.+|..++..+
T Consensus 462 ~Aa~~i~~~l 471 (985)
T TIGR01372 462 AAGAAAARAA 471 (985)
T ss_pred HHHHHHHHHc
Confidence 9999887655
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.9e-17 Score=135.34 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=139.3
Q ss_pred cccccccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEE
Q 018671 9 TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 88 (352)
Q Consensus 9 ~~~~~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 88 (352)
+...+.+-++.+.+..|.+|+|||+..+...+||--|.-|+-+.+..+. +-+ +..| .-+.|..+|
T Consensus 98 sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCA-VCD------------Gaap--ifrnk~laV 162 (322)
T KOG0404|consen 98 SSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACA-VCD------------GAAP--IFRNKPLAV 162 (322)
T ss_pred cCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhh-ccc------------Ccch--hhcCCeeEE
Confidence 3344456667789999999999999988888898644334444443221 110 1111 123457899
Q ss_pred ECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHH-HHhCCCEEEeC-ceEEEECC-
Q 018671 89 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ-LSKSGVRLVRG-IVKDVDSQ- 165 (352)
Q Consensus 89 vGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~-l~~~gV~v~~~-~V~~v~~~- 165 (352)
||||.+++|-|..|.+++ .+|.++++.+-+ ..++.++++ ++.-+|+++.+ .+.+..++
T Consensus 163 IGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f-----RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~ 223 (322)
T KOG0404|consen 163 IGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF-----RASKIMQQRAEKNPNIEVLYNTVAVEALGDG 223 (322)
T ss_pred EcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh-----hHHHHHHHHHhcCCCeEEEechhhhhhccCc
Confidence 999999999999999988 899999987544 233333433 44458999988 45554443
Q ss_pred ----eEEEc---CC--cEEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCc
Q 018671 166 ----KLILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT 235 (352)
Q Consensus 166 ----~v~~~---~g--~~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~ 235 (352)
.+.++ .| +.++.+-++++.|+.|++ +++. .+++|.+|.|.+-+.-..++.|++||+||+..-
T Consensus 224 ~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~------- 295 (322)
T KOG0404|consen 224 KLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK------- 295 (322)
T ss_pred ccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH-------
Confidence 23332 23 469999999999999996 6665 788899999999874444499999999999852
Q ss_pred CCCCchHHHHHHHHHHHH
Q 018671 236 VLPALAQVAERQGKYLFS 253 (352)
Q Consensus 236 ~~~~~~~~A~~qg~~~a~ 253 (352)
-..++..|...|-++|-
T Consensus 296 -kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 296 -KYRQAVTAAGSGCIAAL 312 (322)
T ss_pred -HHHHHHhhhccchhhhh
Confidence 13445555566666554
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=141.64 Aligned_cols=189 Identities=21% Similarity=0.250 Sum_probs=140.0
Q ss_pred cccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccC---cCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEE
Q 018671 13 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 89 (352)
Q Consensus 13 ~~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVv 89 (352)
.+...+|..+....+|||||++-+-.++||-+++- ..++...|.. --++|+|+||
T Consensus 303 ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP----------------------LF~gK~VAVI 360 (520)
T COG3634 303 EVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP----------------------LFKGKRVAVI 360 (520)
T ss_pred EEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc----------------------ccCCceEEEE
Confidence 34556778899999999999999889999975521 1111111110 1245799999
Q ss_pred CCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhC-CCEEEeC-ceEEEECC--
Q 018671 90 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQ-- 165 (352)
Q Consensus 90 GgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~-gV~v~~~-~V~~v~~~-- 165 (352)
|||.+|+|.|..|+-.. .+||+++-.+-| +.-+.+++.|+.. +|+++++ .-++|.++
T Consensus 361 GGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL-----kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~ 421 (520)
T COG3634 361 GGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL-----KADAVLQDKLRSLPNVTIITNAQTTEVKGDGD 421 (520)
T ss_pred CCCcchHHHHHhHHhhh--------------heeeeeecchhh-----hhHHHHHHHHhcCCCcEEEecceeeEEecCCc
Confidence 99999999999999887 789999743212 2334566667665 8999999 78888776
Q ss_pred ---eEEEc---CCc--EEecceEEEecCCCcch-hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcC
Q 018671 166 ---KLILN---DGT--EVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 236 (352)
Q Consensus 166 ---~v~~~---~g~--~i~~D~vi~a~G~~~~~-~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~ 236 (352)
++... +|+ .++-+-|++-.|..||+ |++.. ++++++|.|.||..-.+ +.|+|||+|||...+
T Consensus 422 kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~------- 492 (520)
T COG3634 422 KVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGET-NVPGVFAAGDCTTVP------- 492 (520)
T ss_pred eecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCc-CCCceeecCcccCCc-------
Confidence 23332 343 47788899999999996 77776 88899999999999988 999999999999753
Q ss_pred CCCchHHHHHHHHHHH
Q 018671 237 LPALAQVAERQGKYLF 252 (352)
Q Consensus 237 ~~~~~~~A~~qg~~~a 252 (352)
.+....|+.+|..++
T Consensus 493 -yKQIIIamG~GA~Aa 507 (520)
T COG3634 493 -YKQIIIAMGEGAKAS 507 (520)
T ss_pred -cceEEEEecCcchhh
Confidence 445555666665554
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.63 E-value=1.5e-15 Score=147.19 Aligned_cols=180 Identities=15% Similarity=0.180 Sum_probs=116.4
Q ss_pred EeeCCEEEEcCC--CCCCCCCCCCccccC---cCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHH
Q 018671 21 KISYDKLVIALG--AEASTFGIHGVKENA---TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 95 (352)
Q Consensus 21 ~i~yD~LViAtG--s~~~~~~ipG~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g 95 (352)
+..||+|||||| +.|+.|.+||++++. .+.+++.+.. .-+.++|+|||+|.+|
T Consensus 159 ~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~----------------------~~~gk~VvVVG~G~Sg 216 (461)
T PLN02172 159 DEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD----------------------PFKNEVVVVIGNFASG 216 (461)
T ss_pred EEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc----------------------ccCCCEEEEECCCcCH
Confidence 567999999999 679999999985421 1111111111 1234699999999999
Q ss_pred HHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC-CeEEEcCCc
Q 018671 96 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS-QKLILNDGT 173 (352)
Q Consensus 96 ~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~-~~v~~~~g~ 173 (352)
+|+|.+|+... .+|+++++...... .+.+.....++..+ .|..+.. +.|+++||+
T Consensus 217 ~diA~~L~~~a--------------~~V~l~~r~~~~~~---------~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~ 273 (461)
T PLN02172 217 ADISRDIAKVA--------------KEVHIASRASESDT---------YEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGK 273 (461)
T ss_pred HHHHHHHHHhC--------------CeEEEEEeeccccc---------cccCcCCCCceEECCcccceecCCeEEECCCC
Confidence 99999999887 89999987531110 01111122344445 5665543 469999999
Q ss_pred EEecceEEEecCCCcc-hhhhhcC-CCCCCCCcc-ccCCccccCC-CCCEEEEccccccccCCCCcCCCCchHHHHHHHH
Q 018671 174 EVPYGLLVWSTGVGPS-TLVKSLD-LPKSPGGRI-GIDEWLRVPS-VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 174 ~i~~D~vi~a~G~~~~-~~~~~~~-l~~~~~G~i-~Vd~~l~~~~-~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~ 249 (352)
++++|.||+|||++++ +++...+ +..+. +++ ..-++.=.+. .|++..+|=+.. ......+..||+
T Consensus 274 ~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~-~~v~~Ly~~~f~~~~~p~LafiG~~~~----------~~~f~~~E~Qa~ 342 (461)
T PLN02172 274 VVYADTIVHCTGYKYHFPFLETNGYMRIDE-NRVEPLYKHVFPPALAPGLSFIGLPAM----------GIQFVMFEIQSK 342 (461)
T ss_pred CccCCEEEECCcCCccccccCcccceeeCC-CcchhhHHhhcCCCCCCcEEEEecccc----------ccCchhHHHHHH
Confidence 9999999999999998 6765432 22221 111 1111111223 489999995532 233567889999
Q ss_pred HHHHHHH
Q 018671 250 YLFSLLN 256 (352)
Q Consensus 250 ~~a~~i~ 256 (352)
.+|+.+.
T Consensus 343 ~~a~v~s 349 (461)
T PLN02172 343 WVAAVLS 349 (461)
T ss_pred HHHHHHc
Confidence 9998664
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.63 E-value=8.2e-15 Score=141.98 Aligned_cols=221 Identities=15% Similarity=0.113 Sum_probs=127.6
Q ss_pred EeeCCEEEEcCCCCC-CCCCCCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHH
Q 018671 21 KISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 98 (352)
Q Consensus 21 ~i~yD~LViAtGs~~-~~~~ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~ 98 (352)
...||+||||||+.+ +.++|||.+ ++++.. .+.....+...+.... ......+++|+|||+|++|+|+
T Consensus 112 ~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a---~~fl~~~ng~~d~~~~-------~~~~~~gk~VvVIGgGnvAlD~ 181 (491)
T PLN02852 112 RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSA---REFVWWYNGHPDCVHL-------PPDLKSSDTAVVLGQGNVALDC 181 (491)
T ss_pred hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEH---HHHHHHhhcchhhhhh-------hhcccCCCEEEEECCCHHHHHH
Confidence 447999999999985 678899963 233322 2221111100000000 0001234699999999999999
Q ss_pred HHHHHHhHhh----HHH-hhcCCCC--CccEEEEEeCCCC--CCCCcHHHHH----------------------------
Q 018671 99 SGELSDFIMR----DVR-QRYSHVK--DYIHVTLIEANEI--LSSFDDRLRH---------------------------- 141 (352)
Q Consensus 99 A~~l~~~~~~----~~~-~~~~~~~--~~~~V~lv~~~~~--l~~~~~~~~~---------------------------- 141 (352)
|..|.+.... +.. ..+..++ .-.+|+++-+... .+....++.+
T Consensus 182 Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~ 261 (491)
T PLN02852 182 ARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKA 261 (491)
T ss_pred HHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhcc
Confidence 9998764110 000 0000011 1256888876421 1111112111
Q ss_pred ---------HHHHHHHh---------CCCEEEeC-ceEEEEC-----C---eEEEc-----------------CC--cEE
Q 018671 142 ---------YATTQLSK---------SGVRLVRG-IVKDVDS-----Q---KLILN-----------------DG--TEV 175 (352)
Q Consensus 142 ---------~~~~~l~~---------~gV~v~~~-~V~~v~~-----~---~v~~~-----------------~g--~~i 175 (352)
.+.+...+ ++|.+++. ..++|.+ + ++.+. +| +++
T Consensus 262 ~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i 341 (491)
T PLN02852 262 SRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDL 341 (491)
T ss_pred chhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEE
Confidence 11112112 46777655 4555531 1 12221 23 258
Q ss_pred ecceEEEecCCCcch-----hhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 176 PYGLLVWSTGVGPST-----LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 176 ~~D~vi~a~G~~~~~-----~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
+||.||.+.|+++.+ +....++..+.+|+|.+|+.+++ +.|+|||+|||.. |. ......++.+|..
T Consensus 342 ~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~-----Gp---~gvI~t~~~dA~~ 412 (491)
T PLN02852 342 PCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKR-----GP---TGIIGTNLTCAEE 412 (491)
T ss_pred ECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeeeEec-----CC---CCeeeecHhhHHH
Confidence 999999999998432 22223455567899999987776 8999999999996 21 3366788999999
Q ss_pred HHHHHHHHhh
Q 018671 251 LFSLLNRIGK 260 (352)
Q Consensus 251 ~a~~i~~~~~ 260 (352)
+|.+|...+.
T Consensus 413 ta~~i~~d~~ 422 (491)
T PLN02852 413 TVASIAEDLE 422 (491)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 79
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.48 E-value=4.8e-14 Score=121.93 Aligned_cols=129 Identities=30% Similarity=0.495 Sum_probs=91.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC----CCCcH-----------HHH--H--HHHH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 145 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----~~~~~-----------~~~--~--~~~~ 145 (352)
+|+|||||++|+.+|.+|++.. .+|++++..... ..++. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 4899999999999999999655 899999764311 11110 011 1 3344
Q ss_pred HHHhCCCEEEeC-ceEEEECC--eE----------EEcCCcEEecceEEEecCCCcc-hhh-------------------
Q 018671 146 QLSKSGVRLVRG-IVKDVDSQ--KL----------ILNDGTEVPYGLLVWSTGVGPS-TLV------------------- 192 (352)
Q Consensus 146 ~l~~~gV~v~~~-~V~~v~~~--~v----------~~~~g~~i~~D~vi~a~G~~~~-~~~------------------- 192 (352)
.+...+++++.+ ++.+++.. .+ ...++.+++||.+|+|+|..|. +.+
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 557789999776 78887653 21 1234568999999999998865 211
Q ss_pred ------------------hhcCCCCCCCCccccCCccccCCCCCEEEEcccccc
Q 018671 193 ------------------KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 228 (352)
Q Consensus 193 ------------------~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~ 228 (352)
+..+++++++|++.||+++|+ +.|+|||+|||+..
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI 199 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 233456678899999999999 89999999999974
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.48 E-value=3.4e-13 Score=132.62 Aligned_cols=189 Identities=16% Similarity=0.271 Sum_probs=96.9
Q ss_pred eEeeCCEEEEcCCC--CCCCCC--CCCccccC---cCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCC
Q 018671 20 FKISYDKLVIALGA--EASTFG--IHGVKENA---TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 92 (352)
Q Consensus 20 ~~i~yD~LViAtGs--~~~~~~--ipG~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG 92 (352)
.+-.||+||+|||. .|+.|. +||++++. ++.+++.+. +.-++|+|+|||+|
T Consensus 135 ~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~----------------------~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 135 ETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDP----------------------EPFKGKRVLVVGGG 192 (531)
T ss_dssp EEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TG----------------------GGGTTSEEEEESSS
T ss_pred EEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcCh----------------------hhcCCCEEEEEeCC
Confidence 34579999999994 588884 89985421 111111111 12345799999999
Q ss_pred hHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCCC-----------------------cHHH--------
Q 018671 93 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSF-----------------------DDRL-------- 139 (352)
Q Consensus 93 ~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~-----------------------~~~~-------- 139 (352)
.||+++|.+|+... .+|++..+. -++|.. +..+
T Consensus 193 ~Sg~DIa~el~~~a--------------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~ 258 (531)
T PF00743_consen 193 NSGADIAVELSRVA--------------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKK 258 (531)
T ss_dssp HHHHHHHHHHTTTS--------------CCEEEECC--------------------------------------------
T ss_pred HhHHHHHHHHHHhc--------------CCeEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765 333333332 111110 0001
Q ss_pred -------------------------HHHHHHHHHhCCCEEEeCceEEEECCeEEEcCCcEE-ecceEEEecCCCcc-hhh
Q 018671 140 -------------------------RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLV 192 (352)
Q Consensus 140 -------------------------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i-~~D~vi~a~G~~~~-~~~ 192 (352)
.+.+...+....|+++ ..|+++++++|+|+||+++ ++|.||+|||++.. +++
T Consensus 259 l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL 337 (531)
T PF00743_consen 259 LNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFL 337 (531)
T ss_dssp ----------------------------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 1111111222233332 2477888899999999875 69999999999987 777
Q ss_pred hhcCCCCCCCCccccCCccccC--CCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHH
Q 018671 193 KSLDLPKSPGGRIGIDEWLRVP--SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 255 (352)
Q Consensus 193 ~~~~l~~~~~G~i~Vd~~l~~~--~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i 255 (352)
.+.-+... ++.+....++=.+ .+|++..+|=+.. .......+..||+.+|+-+
T Consensus 338 ~~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~---------~g~~fp~~ElQArw~a~v~ 392 (531)
T PF00743_consen 338 DESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQP---------FGSIFPIFELQARWAARVF 392 (531)
T ss_dssp -TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBS---------SS-HHHHHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccccccc---------ccccccccccccccccccc
Confidence 76433332 3344333333222 4588999996542 1234557888888888765
No 81
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.38 E-value=4.1e-12 Score=93.15 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ .++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999987 899999997 6779999999999999999999999999 79998
Q ss_pred ECC--e--EEEcCC
Q 018671 163 DSQ--K--LILNDG 172 (352)
Q Consensus 163 ~~~--~--v~~~~g 172 (352)
+.+ + |.++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 764 3 677765
No 82
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.35 E-value=7.3e-12 Score=108.27 Aligned_cols=180 Identities=23% Similarity=0.326 Sum_probs=116.8
Q ss_pred ccCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCCh
Q 018671 14 TLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 93 (352)
Q Consensus 14 ~~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 93 (352)
..+.++.++.|++|++|+|++|... ..|........++.+.+..++..+. +.|.|.|+|.|-
T Consensus 83 i~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~-----------------kaK~VlilgnGg 144 (334)
T KOG2755|consen 83 IHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLV-----------------KAKIVLILGNGG 144 (334)
T ss_pred EEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHh-----------------hcceEEEEecCc
Confidence 4566778999999999999999864 4445566777778888888887763 447999999999
Q ss_pred HHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCcHHHHHHHHHHHH-----------------------
Q 018671 94 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLS----------------------- 148 (352)
Q Consensus 94 ~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-~~~~~~~~~~~~~~l~----------------------- 148 (352)
+++|++.++.. .+|++.... .+- ..++|.+.+.+...|.
T Consensus 145 ia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~ 208 (334)
T KOG2755|consen 145 IAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCE 208 (334)
T ss_pred hhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCccc
Confidence 99999999975 344443332 111 1122222222222220
Q ss_pred -------------------------hCCCEEEeCceEEE-ECC---eEEEcC---C--cEEecceEEEecCCCcc-hhhh
Q 018671 149 -------------------------KSGVRLVRGIVKDV-DSQ---KLILND---G--TEVPYGLLVWSTGVGPS-TLVK 193 (352)
Q Consensus 149 -------------------------~~gV~v~~~~V~~v-~~~---~v~~~~---g--~~i~~D~vi~a~G~~~~-~~~~ 193 (352)
++.+.+..+.+..+ ++. .++..+ + ..+.||.+++++|..|+ ++.-
T Consensus 209 ~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~ 288 (334)
T KOG2755|consen 209 ENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAM 288 (334)
T ss_pred ccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEe
Confidence 00111111111111 110 111111 1 25789999999999999 4555
Q ss_pred hcCCCCCCCCccccCCccccCCCCCEEEEcccccc
Q 018671 194 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 228 (352)
Q Consensus 194 ~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~ 228 (352)
...++..++|.++||+.|++ +.|++||+||.+..
T Consensus 289 ~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 289 NKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred cChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 55666778899999999998 99999999998863
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=118.32 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=132.8
Q ss_pred cCCCeeEeeCCEEEEcCCCC-CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCCh
Q 018671 15 LEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 93 (352)
Q Consensus 15 ~~~~~~~i~yD~LViAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 93 (352)
++.+.-.-.||++++|+|+. |+..++||.+ ...+..|..+..++...... ..+. .......+++|+|||||.
T Consensus 200 it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~-~~~~-~~~~~~~gk~vvVIGgG~ 272 (457)
T COG0493 200 ITLEELLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLG-DFAE-DRTPPAKGKRVVVIGGGD 272 (457)
T ss_pred CCHHHHHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhc-cccc-ccCCCCCCCeEEEECCCC
Confidence 33334445689999999976 7878999962 22233444443333211111 1110 011123447999999999
Q ss_pred HHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--C-CCCCCcHHHHHHHHHHHHhCCCEEEeC------------c
Q 018671 94 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG------------I 158 (352)
Q Consensus 94 ~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~-~l~~~~~~~~~~~~~~l~~~gV~v~~~------------~ 158 (352)
++++++......+. .+|+.+.+. + -....+........+...+.|+..... +
T Consensus 273 Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~Gr 339 (457)
T COG0493 273 TAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGR 339 (457)
T ss_pred CHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCc
Confidence 99999977776662 577777532 2 122222222333444555566554433 3
Q ss_pred eEEEECCeEEEc--------------CC--cEEecceEEEecCCCcch--h-hhhcCCCCCCCCccccCCcc-ccCCCCC
Q 018671 159 VKDVDSQKLILN--------------DG--TEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWL-RVPSVQD 218 (352)
Q Consensus 159 V~~v~~~~v~~~--------------~g--~~i~~D~vi~a~G~~~~~--~-~~~~~l~~~~~G~i~Vd~~l-~~~~~~~ 218 (352)
|+.+.-..+... .| ..+++|+++.+.|+.++. . ....++..+..|++.+++.+ ++ +.|+
T Consensus 340 V~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~ 418 (457)
T COG0493 340 VTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPG 418 (457)
T ss_pred EeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCC
Confidence 333322222111 12 257899999999999873 2 22335677889999999988 55 8999
Q ss_pred EEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHH
Q 018671 219 VFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 219 IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~ 257 (352)
+||.|||.. | ......|+.+|+.+|+.|..
T Consensus 419 vfa~gD~~~-----g----~~~vv~ai~eGr~aak~i~~ 448 (457)
T COG0493 419 VFAGGDAVR-----G----AALVVWAIAEGREAAKAIDK 448 (457)
T ss_pred eeeCceecc-----c----hhhhhhHHhhchHHHHhhhH
Confidence 999999996 2 56778999999999999983
No 84
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.19 E-value=4.9e-11 Score=120.16 Aligned_cols=226 Identities=21% Similarity=0.278 Sum_probs=133.4
Q ss_pred EEeeccccccccCCCeeEeeCCEEEEcCCCC-CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhcc
Q 018671 4 HCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 82 (352)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~yD~LViAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (352)
.+..+...++.+.-++-.-.+|.+|+|+||+ |+..++||-+ ++.+.-|.++.++-...+-.....+ .-...+
T Consensus 1851 ~f~tn~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~lld~~~d~--~~~~~~ 1923 (2142)
T KOG0399|consen 1851 RFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSLLDSVLDG--NYISAK 1923 (2142)
T ss_pred eEEeeccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhhhcccccc--ceeccC
Confidence 3444555566666666667899999999987 7888999952 3344444444332211111111100 012346
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEe----CC------CCCCCCcHH-----HHHHHHHHH
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE----AN------EILSSFDDR-----LRHYATTQL 147 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~----~~------~~l~~~~~~-----~~~~~~~~l 147 (352)
+|+|+|||||.+|-++.+.-.+.+- +.|.-++ ++ ...|..+.- -.+.+.+..
T Consensus 1924 gkkvivigggdtg~dcigtsvrhg~-------------~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~ 1990 (2142)
T KOG0399|consen 1924 GKKVIVIGGGDTGTDCIGTSVRHGC-------------KSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHY 1990 (2142)
T ss_pred CCeEEEECCCCccccccccchhhcc-------------ceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHh
Confidence 7899999999999998877666552 2222111 11 112222210 011111111
Q ss_pred ----HhCCC---EEEeC---ceEEEEC-------C---e---EEEcC-CcEEecceEEEecCCCcch--hhhhcCCCCCC
Q 018671 148 ----SKSGV---RLVRG---IVKDVDS-------Q---K---LILND-GTEVPYGLLVWSTGVGPST--LVKSLDLPKSP 201 (352)
Q Consensus 148 ----~~~gV---~v~~~---~V~~v~~-------~---~---v~~~~-g~~i~~D~vi~a~G~~~~~--~~~~~~l~~~~ 201 (352)
+.+-| .++.+ .|+.++- + . ++..+ .+.++||++|++.|+..+. ..+++++..|+
T Consensus 1991 g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~ 2070 (2142)
T KOG0399|consen 1991 GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDP 2070 (2142)
T ss_pred CCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCc
Confidence 11111 01111 2333221 1 1 12222 2468999999999998773 67888999998
Q ss_pred CCccccC-CccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd-~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
++.|..- +.+.+ +.+.|||+|||-. | ..+..+|+++|+.+|+.+-...
T Consensus 2071 rsni~t~~~~y~t-~v~~vfaagdcrr-----g----qslvvwai~egrq~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2071 RSNILTPKDSYST-DVAKVFAAGDCRR-----G----QSLVVWAIQEGRQAARQVDELM 2119 (2142)
T ss_pred cccccCCCccccc-cccceeecccccC-----C----ceEEEEEehhhhHHHHHHHHHh
Confidence 8888775 35665 8999999999996 3 4567789999999999887644
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.19 E-value=6.8e-10 Score=113.79 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=110.9
Q ss_pred EeeCCEEEEcCCC-CCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 21 KISYDKLVIALGA-EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 21 ~i~yD~LViAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
...||+|+||||+ .|+.+++||.+ ...+.+..+.....+.. ..++.... .....+++|||||||.+|+|+|
T Consensus 495 ~~gyDAV~IATGA~kpr~L~IPGed--a~GV~sA~DfL~~l~~~-~~~~~~~~-----~~~~~Gk~VVVIGGGnTAmD~A 566 (1028)
T PRK06567 495 DLGFDHIAFCIGAGQPKVLDIENFE--AKGVKTASDFLMTLQSG-GAFLKNSN-----TNMVIRMPIAVIGGGLTSLDAA 566 (1028)
T ss_pred hcCCCEEEEeCCCCCCCCCCCCCcc--CCCeEEHHHHHHHHhhc-cccccccc-----CcccCCCCEEEEcCcHHHHHHH
Confidence 4679999999999 69999999963 23333334432221110 00110000 0112246899999999999999
Q ss_pred HHHHHh--------HhhHHHhhcCCC----------------------------CCccEEEEEeCC--CCCCCC---cHH
Q 018671 100 GELSDF--------IMRDVRQRYSHV----------------------------KDYIHVTLIEAN--EILSSF---DDR 138 (352)
Q Consensus 100 ~~l~~~--------~~~~~~~~~~~~----------------------------~~~~~V~lv~~~--~~l~~~---~~~ 138 (352)
.+...+ ......+.|+.. ...-.|+++.+. .-+|.. ..+
T Consensus 567 rtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eE 646 (1028)
T PRK06567 567 TESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEE 646 (1028)
T ss_pred HHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHH
Confidence 844321 001111111110 001127887765 345543 233
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEECC---e---EEEc--------------C-C---------------cEEecceEE
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDSQ---K---LILN--------------D-G---------------TEVPYGLLV 181 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~---~---v~~~--------------~-g---------------~~i~~D~vi 181 (352)
+. ...+.||+++.. ...++..+ . +.+. + + .+++||+||
T Consensus 647 v~-----~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi 721 (1028)
T PRK06567 647 LI-----YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVI 721 (1028)
T ss_pred HH-----HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEE
Confidence 32 234569998877 55555321 1 1111 1 1 368999999
Q ss_pred EecCCCcchhhhhcCCCCCCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 182 WSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 182 ~a~G~~~~~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
+|+|..|+.... ..++-..||+-.+ +..+...|+.+|+.++.+|.+.+.
T Consensus 722 ~A~G~~~~~~~~----------------------~~~~s~~~d~~~~--------f~Gtvv~A~as~k~~~~~i~~~l~ 770 (1028)
T PRK06567 722 MAIGIENNTQFD----------------------EDKYSYFGDCNPK--------YSGSVVKALASSKEGYDAINKKLI 770 (1028)
T ss_pred EecccCCccccc----------------------ccccccccCCCCc--------cccHHHHHHHHHHhHHHHHHHHHh
Confidence 999999985220 1123445555432 234678899999999999987765
No 86
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.08 E-value=1.1e-08 Score=94.44 Aligned_cols=205 Identities=19% Similarity=0.145 Sum_probs=126.0
Q ss_pred ccCCCeeEeeCCEEEEcCCCCCCCCC-CCCcc-ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECC
Q 018671 14 TLEPWKFKISYDKLVIALGAEASTFG-IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 91 (352)
Q Consensus 14 ~~~~~~~~i~yD~LViAtGs~~~~~~-ipG~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGg 91 (352)
+++.++..+.+..|||++|.+|..|+ +..+. +.+++. .++..+. .+..+..+|+|||+
T Consensus 136 ~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHs------s~~~~~~--------------~~~~~~~~V~ViG~ 195 (436)
T COG3486 136 VVTANGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHS------SEYLERH--------------PELLQKRSVTVIGS 195 (436)
T ss_pred EEcCCCcEEEeeeEEEccCCCcCCChHHhCcCccceeeh------HHHHHhh--------------HHhhcCceEEEEcC
Confidence 45666678999999999999999873 22221 233332 1111111 01122235999999
Q ss_pred ChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------C-----------cHH------------
Q 018671 92 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------F-----------DDR------------ 138 (352)
Q Consensus 92 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~---------~-----------~~~------------ 138 (352)
|.+|.|+-..|..... +...++.++.++ .++|. + +++
T Consensus 196 GQSAAEi~~~Ll~~~~----------~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~ 265 (436)
T COG3486 196 GQSAAEIFLDLLNSQP----------PQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLL 265 (436)
T ss_pred CccHHHHHHHHHhCCC----------CcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcc
Confidence 9999999988865331 122467788776 44431 1 111
Q ss_pred -------HHHHHHHHHH-------hCCCEEEeC-ceEEEECCe---EEEc-----C--CcEEecceEEEecCCCcc-h-h
Q 018671 139 -------LRHYATTQLS-------KSGVRLVRG-IVKDVDSQK---LILN-----D--GTEVPYGLLVWSTGVGPS-T-L 191 (352)
Q Consensus 139 -------~~~~~~~~l~-------~~gV~v~~~-~V~~v~~~~---v~~~-----~--g~~i~~D~vi~a~G~~~~-~-~ 191 (352)
+...+.+.|- +..|.+..+ +|..+++.+ +.+. + .+++++|.||+|||++.. | +
T Consensus 266 YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f 345 (436)
T COG3486 266 YKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSF 345 (436)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchh
Confidence 2222222222 234667777 788887653 4432 2 357899999999999854 4 7
Q ss_pred hhhcC--CCCCCCCccccCCccccCCC----CCEEEEccccccccCCCCcCCCCchHHHHHHHHHHH
Q 018671 192 VKSLD--LPKSPGGRIGIDEWLRVPSV----QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 252 (352)
Q Consensus 192 ~~~~~--l~~~~~G~i~Vd~~l~~~~~----~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a 252 (352)
+..+. +..+.+|+..|++++++... -.||+-|=+..... .| -|...-.|.+.+.++-
T Consensus 346 L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG-ig---~pdLsl~a~Raa~I~~ 408 (436)
T COG3486 346 LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG-IG---APDLSLGAWRAAVILN 408 (436)
T ss_pred hhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc-cC---CccchHHHHHHHHHHH
Confidence 76654 56788899999998776332 26999997765332 12 2666667776665543
No 87
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.91 E-value=1.6e-08 Score=92.82 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=75.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHHH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 147 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~-----~~~~~~~~~~~l 147 (352)
+|+|||||++|+++|..|++.+ .+|+|+++... .|.+ +.++.+.+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998876 78999997431 1323 257888888999
Q ss_pred HhCCCEEEeCceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 148 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 148 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++.|++++..+|.+++.+ .+.+++++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999988778888765 466677889999999999999886
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.87 E-value=4.2e-09 Score=98.42 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCeeEeeCCEEEEcCCCCCCCCCCC-Ccc--ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCCh
Q 018671 17 PWKFKISYDKLVIALGAEASTFGIH-GVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 93 (352)
Q Consensus 17 ~~~~~i~yD~LViAtGs~~~~~~ip-G~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~ 93 (352)
+++.++.++.||||||..|..|..- ... +.+++...+.. +. +.....++|+|||||.
T Consensus 141 g~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~------~~--------------~~~~~~~~V~VVGgGQ 200 (341)
T PF13434_consen 141 GDGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLS------RI--------------DQSLAGKRVAVVGGGQ 200 (341)
T ss_dssp S-EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHH------HH--------------T-----EEEEEE-SSH
T ss_pred CCeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhh------cc--------------ccccCCCeEEEECCcH
Confidence 3678999999999999888876422 221 23333322211 11 0012345999999999
Q ss_pred HHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCCC---------Cc---------------------------
Q 018671 94 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS---------FD--------------------------- 136 (352)
Q Consensus 94 ~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~---------~~--------------------------- 136 (352)
+|.|++..|.+... ..+|+++.++. +.|. +.
T Consensus 201 SAAEi~~~L~~~~~------------~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny 268 (341)
T PF13434_consen 201 SAAEIFLDLLRRGP------------EAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY 268 (341)
T ss_dssp HHHHHHHHHHHH-T------------TEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred hHHHHHHHHHhCCC------------CcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence 99999999988652 27999999873 3221 11
Q ss_pred ----HHHHHHHHHHH------HhCCCEEEeC-ceEEEEC---CeEE--EcC---C--cEEecceEEEecCCC
Q 018671 137 ----DRLRHYATTQL------SKSGVRLVRG-IVKDVDS---QKLI--LND---G--TEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 ----~~~~~~~~~~l------~~~gV~v~~~-~V~~v~~---~~v~--~~~---g--~~i~~D~vi~a~G~~ 187 (352)
+++.+.+.+.+ .+..+.++.+ +|++++. +++. +.+ + .++++|.||+|||++
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 12222222222 1234678877 7777643 2343 333 2 468999999999974
No 89
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.84 E-value=8.6e-08 Score=92.86 Aligned_cols=75 Identities=25% Similarity=0.353 Sum_probs=54.1
Q ss_pred eeCCEEEEcCC--CCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHH
Q 018671 22 ISYDKLVIALG--AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 99 (352)
Q Consensus 22 i~yD~LViAtG--s~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 99 (352)
+.+|+||+||| +.|+.|.++|.+++.-.. -++...+ ..+.-++|+|+|||+|.||+++|
T Consensus 131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~---~HS~~~~----------------~~~~~~GKrV~VIG~GaSA~di~ 191 (443)
T COG2072 131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRI---LHSADWP----------------NPEDLRGKRVLVIGAGASAVDIA 191 (443)
T ss_pred EecCEEEEeecCCCCCCCCCCCCccCCCceE---EchhcCC----------------CccccCCCeEEEECCCccHHHHH
Confidence 66999999999 569999999986532110 1111111 11223558999999999999999
Q ss_pred HHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 100 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|++.+ .+|+++.+.
T Consensus 192 ~~l~~~g--------------a~vt~~qRs 207 (443)
T COG2072 192 PELAEVG--------------ASVTLSQRS 207 (443)
T ss_pred HHHHhcC--------------CeeEEEecC
Confidence 9999986 688888775
No 90
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.81 E-value=2.6e-08 Score=95.51 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=71.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC----CCCcHHHH---------HHHHHHHHhC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLR---------HYATTQLSKS 150 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----~~~~~~~~---------~~~~~~l~~~ 150 (352)
++|+|||||++|+++|..|++.+ .+.+|++++..... |.++..+. ..-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 48999999999999999998765 23689999876322 22322211 0013456778
Q ss_pred CCEEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcch
Q 018671 151 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
+|+++.+ .|..++.+ .|.+++|+++.||.+|+|||.+|..
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9999998 79888765 6788889999999999999999863
No 91
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.74 E-value=1.3e-07 Score=90.57 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=105.2
Q ss_pred EEECCChHHHHHH-HHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEE
Q 018671 87 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 163 (352)
Q Consensus 87 vVvGgG~~g~e~A-~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~ 163 (352)
+|++.|..|+|.+ ..++++... -+.+|++++.. +.++.+ ++.+.+.+.|++.|++++++ +|.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7889999999999 555443211 02899999876 666653 78889999999999999999 788876
Q ss_pred C--CeEE---EcCC--cEEecceEEEecCCCcch-hhhh--------cCCCC----CC---------------CCccccC
Q 018671 164 S--QKLI---LNDG--TEVPYGLLVWSTGVGPST-LVKS--------LDLPK----SP---------------GGRIGID 208 (352)
Q Consensus 164 ~--~~v~---~~~g--~~i~~D~vi~a~G~~~~~-~~~~--------~~l~~----~~---------------~G~i~Vd 208 (352)
. +.+. ..+| .++++|.+|+|+|..+.. +..+ +++++ ++ .=.|.+|
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 3 3332 3344 358999999999987553 3111 12221 00 0126777
Q ss_pred Ccccc------CCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHH
Q 018671 209 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 209 ~~l~~------~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~ 258 (352)
+.|+. +..+|+||+|++..-+++.-. -.-.-+|+..|-.+|++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHHHHHHHHHHHHHh
Confidence 77764 247999999999874442110 111237888999999888653
No 92
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.69 E-value=1e-07 Score=90.32 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=71.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---CCCc---------HHHHHHHHHHHHhCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 152 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 152 (352)
+|||||||++|+.+|..+.+.. .++.+|+|+++.... +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999998885432 134899999986322 2211 2233345566778899
Q ss_pred EEEeCceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 153 RLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 153 ~v~~~~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+++.++|++++.+ .|.+++|+++++|.+|+|||..+.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 9988889999864 688899989999999999999987
No 93
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.68 E-value=5.4e-09 Score=90.44 Aligned_cols=86 Identities=23% Similarity=0.235 Sum_probs=49.8
Q ss_pred cccccccCCC-eeEeeCCEEEEcCCC--CCCCCCCCC-ccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCC
Q 018671 9 TDELRTLEPW-KFKISYDKLVIALGA--EASTFGIHG-VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 84 (352)
Q Consensus 9 ~~~~~~~~~~-~~~i~yD~LViAtGs--~~~~~~ipG-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (352)
+.++..++.+ +.++.+|+||+|||. .|+.|.+|| .....++.....+ ...-+.+
T Consensus 111 ~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~~----------------------~~~~~~k 168 (203)
T PF13738_consen 111 DGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWRD----------------------PEDFKGK 168 (203)
T ss_dssp ETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-ST----------------------TGGCTTS
T ss_pred eccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcCC----------------------hhhcCCC
Confidence 3333444443 458999999999995 788899999 3222222211111 0112347
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
+|+|||+|.+|+++|..|++.+ .+|+++.+.+
T Consensus 169 ~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~~~R~~ 200 (203)
T PF13738_consen 169 RVVVVGGGNSAVDIAYALAKAG--------------KSVTLVTRSP 200 (203)
T ss_dssp EEEEE--SHHHHHHHHHHTTTC--------------SEEEEEESS-
T ss_pred cEEEEcChHHHHHHHHHHHhhC--------------CEEEEEecCC
Confidence 9999999999999999999876 8999998863
No 94
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.67 E-value=2.9e-06 Score=76.28 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=99.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC----------C-------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS----------S------------------- 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~----------~------------------- 134 (352)
.|+|||||++|+-+|.++++.+ .+|.++++. .+.. .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 7999999999999999998866 788888865 2210 0
Q ss_pred ---------CcHHHHHHHHHHHHhCCCEEEeC-ceEEEE--CC-eE---EEc-----------CCcEEecceEEEecCCC
Q 018671 135 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ-KL---ILN-----------DGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 135 ---------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~-~v---~~~-----------~g~~i~~D~vi~a~G~~ 187 (352)
-+..+...+.+...+.|++++.+ +|.++. ++ .+ ... +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 01234445556667789999988 777764 33 22 221 22479999999999987
Q ss_pred cch---hhhhcC---CCC--------CCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHH
Q 018671 188 PST---LVKSLD---LPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 253 (352)
Q Consensus 188 ~~~---~~~~~~---l~~--------~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~ 253 (352)
..- +.+... ... +......|+.+-++ +|++|++|=+++..+ |.+.+-++--.-.-+|+.+|+
T Consensus 173 a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 173 AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchhHhHHHhHHHHHH
Confidence 651 222211 111 11122334444443 899999999876433 332333333344568999999
Q ss_pred HHHHHhh
Q 018671 254 LLNRIGK 260 (352)
Q Consensus 254 ~i~~~~~ 260 (352)
-|...++
T Consensus 249 ~~~~~~~ 255 (257)
T PRK04176 249 LILEKLK 255 (257)
T ss_pred HHHHHhh
Confidence 8876654
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.61 E-value=4.4e-07 Score=84.07 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=71.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------------------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------- 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------------------------------- 132 (352)
.|+|||||++|+-+|..+++.+ .+|+|+|.+ .+.
T Consensus 5 dviIIGgGpAGlMaA~~aa~~G--------------~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~ 70 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKAG--------------RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGH 70 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhcC--------------CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcch
Confidence 7999999999999999999876 778888775 331
Q ss_pred ----------------------------------CC--CcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcC
Q 018671 133 ----------------------------------SS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILND 171 (352)
Q Consensus 133 ----------------------------------~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~ 171 (352)
|. -...+.+.+...+++.||+++++ +|.+++.+ .+.+.+
T Consensus 71 fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~ 150 (408)
T COG2081 71 FLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS 150 (408)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC
Confidence 10 01356677788889999999999 89999876 355678
Q ss_pred CcEEecceEEEecCCC
Q 018671 172 GTEVPYGLLVWSTGVG 187 (352)
Q Consensus 172 g~~i~~D~vi~a~G~~ 187 (352)
|+++.||.+|+|+|-.
T Consensus 151 g~~i~~d~lilAtGG~ 166 (408)
T COG2081 151 GETVKCDSLILATGGK 166 (408)
T ss_pred CCEEEccEEEEecCCc
Confidence 8899999999999944
No 96
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.61 E-value=2.5e-07 Score=90.05 Aligned_cols=93 Identities=23% Similarity=0.444 Sum_probs=69.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC-------CCCC-----c--HHHHHHHHHHHHhC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-----D--DRLRHYATTQLSKS 150 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-------l~~~-----~--~~~~~~~~~~l~~~ 150 (352)
+|+|||||++|+++|..|+++. ++.+|+|+++.+. ++.+ . .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998754 2379999998742 1111 1 12233345668889
Q ss_pred CCEEEeC-ceEEEECC--eEEEcC---CcEEe--cceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDSQ--KLILND---GTEVP--YGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~--~v~~~~---g~~i~--~D~vi~a~G~~~~ 189 (352)
||+++.+ +|.+++.+ .+.+.+ ++++. ||.+|+|||.+|.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 9999887 89998754 566654 56666 9999999999986
No 97
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.59 E-value=2.6e-07 Score=89.35 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=69.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---CCC---------cHHHHHHHHHHHHh
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQLSK 149 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~---------~~~~~~~~~~~l~~ 149 (352)
..++|||||||++|+.+|..|.. ++.+|+||++.+.. |.+ ...+...+.+.+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 74 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAK 74 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhcc
Confidence 44699999999999999877632 23799999986321 221 12233345566777
Q ss_pred CCCEEEeCceEEEECC--eEEE----------cCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRGIVKDVDSQ--KLIL----------NDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~~V~~v~~~--~v~~----------~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+++++.++|++|+.+ .|.+ ++|++++||.+|+|+|..+.
T Consensus 75 ~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 75 LPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 8899988899999864 5766 45678999999999999976
No 98
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.59 E-value=1.9e-07 Score=88.09 Aligned_cols=95 Identities=27% Similarity=0.463 Sum_probs=75.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC--CC-CCC---------cHHHHHHHHHHHHhCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--IL-SSF---------DDRLRHYATTQLSKSG 151 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l-~~~---------~~~~~~~~~~~l~~~g 151 (352)
++|||||||+.|+++|..|.+.. ++.+|+||++.. ++ |.+ ..++...+.+.+++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 58999999999999999997642 138999999862 22 221 2345555677777565
Q ss_pred -CEEEeCceEEEECC--eEEEcCCcEEecceEEEecCCCcch
Q 018671 152 -VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 152 -V~v~~~~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
|++..++|++|+.+ +|+++++.+++||.+|+++|..++.
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 99999999999875 7999998889999999999999885
No 99
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.54 E-value=7e-07 Score=86.94 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=70.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------Cc----------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~---------------------- 136 (352)
.|+||||||.|+++|..+++++ .+|+|+++..+... .|
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGW 69 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCc
Confidence 7999999999999999999987 89999987432110 00
Q ss_pred --------------------HHHHHHHHHHHHhCCCEEEeCceEEEECCeEEE-cCCcEEecceEEEecCCCcc
Q 018671 137 --------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 --------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~-~~g~~i~~D~vi~a~G~~~~ 189 (352)
.++.+.+++.+++.||+++.+++..++++.+.. .+|+++.+|.+|+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 70 TVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 122334455677889999988888888877665 46778999999999999986
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.54 E-value=1.5e-05 Score=71.51 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=98.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC----------CC-------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------SS------------------- 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l----------~~------------------- 134 (352)
.|+|||||++|+-+|..+++.+ .+|.++|+. .+. +.
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 8999999999999999999876 788888875 221 00
Q ss_pred ---------CcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C-----eEEEc-----------CCcEEecceEEEecCC
Q 018671 135 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-----KLILN-----------DGTEVPYGLLVWSTGV 186 (352)
Q Consensus 135 ---------~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-----~v~~~-----------~g~~i~~D~vi~a~G~ 186 (352)
...++.+.+.+...+.|++++.+ +|.++.. + +|.+. +..++.++.||.|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 01234455566667889999988 7777642 2 33332 2247899999999998
Q ss_pred Ccc--h-hhhhcCCCCCCC---C----------ccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHH
Q 018671 187 GPS--T-LVKSLDLPKSPG---G----------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 250 (352)
Q Consensus 187 ~~~--~-~~~~~~l~~~~~---G----------~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~ 250 (352)
... . +.+.+.+..... | ...|+.+-+ -+|++|++|=.++-.. |.+.+-++--.-.-+|+.
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~~~~--~~~rmgp~fg~m~~sg~~ 244 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVAAVH--GLPRMGPIFGGMLLSGKH 244 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhhhhc--CCCCcCchHHHHHHhhHH
Confidence 764 2 334443322110 1 122223333 3899999998776322 332233333334467888
Q ss_pred HHHHHHHH
Q 018671 251 LFSLLNRI 258 (352)
Q Consensus 251 ~a~~i~~~ 258 (352)
+|+.|...
T Consensus 245 ~a~~~~~~ 252 (254)
T TIGR00292 245 VAEQILEK 252 (254)
T ss_pred HHHHHHHH
Confidence 88877654
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.50 E-value=1.1e-06 Score=87.15 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=75.8
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC---CCC------------CCCcHHHHHHHHH
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATT 145 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~l------------~~~~~~~~~~~~~ 145 (352)
.....|+|||||++|+.+|..+++.+ .+|++++.. .+. ....+++.+.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence 34468999999999999999999876 788888641 111 1234677888888
Q ss_pred HHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 146 QLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 146 ~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+++.||+++.+ +|.+++.+ .+.+++|+++.+|.+|+|+|..+.
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 899999999988 79888654 456678889999999999999875
No 102
>PRK06116 glutathione reductase; Validated
Probab=98.49 E-value=8.1e-07 Score=86.63 Aligned_cols=90 Identities=27% Similarity=0.443 Sum_probs=69.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------CcH---------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD--------------------- 137 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~~--------------------- 137 (352)
.|+|||||+.|+.+|..+++.+ .+|+|+|+..+... .|.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g 71 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYG 71 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 7999999999999999999987 89999997532100 000
Q ss_pred ----------------------HHHHHHHHHHHhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 138 ----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ----------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+...+.+++.||+++.+++..+++..|.+ +|+++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 72 FDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 01122334466789999998888888888888 7788999999999999986
No 103
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.49 E-value=8.5e-07 Score=86.15 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=66.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC---CC-CCcHHH----------HHHHHHHH-H
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS-SFDDRL----------RHYATTQL-S 148 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~---l~-~~~~~~----------~~~~~~~l-~ 148 (352)
++|||||||+.|+.+|..|+++. ++.+|+|+++.+. .+ .++.-+ .....+.+ +
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~------------~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhC------------CCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHH
Confidence 38999999999999999997643 2489999998632 11 111111 11111333 5
Q ss_pred hCCCEEEeC-ceEEEECC--eEEEcCC---c--EEecceEEEecCCCcc
Q 018671 149 KSGVRLVRG-IVKDVDSQ--KLILNDG---T--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 149 ~~gV~v~~~-~V~~v~~~--~v~~~~g---~--~i~~D~vi~a~G~~~~ 189 (352)
+.||+++.+ +|.+|+.+ .|.+.++ + +++||.+|+|||.+|.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 679999887 89999875 5666543 2 4789999999999986
No 104
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.48 E-value=8.2e-07 Score=92.15 Aligned_cols=93 Identities=23% Similarity=0.389 Sum_probs=71.2
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC----CCc---------HHHHHHHHHHHHhCCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD---------DRLRHYATTQLSKSGV 152 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----~~~---------~~~~~~~~~~l~~~gV 152 (352)
|||||+|++|+.+|..|.++. +.+.+|+|+++.+..+ .++ +++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-----------~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-----------RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-----------CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 589999999999999997753 1237999999863321 121 1122223466788999
Q ss_pred EEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 153 RLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 153 ~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+++.+ +|++|+.+ .|.+.+|++++||.+|+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99998 79999875 688889999999999999999886
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.47 E-value=1.7e-06 Score=85.80 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC---CC--------CC----CCcHHHHHHHHHHH
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQL 147 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~--------l~----~~~~~~~~~~~~~l 147 (352)
...|+|||||++|+.+|.++++.+ .+|++++.. .+ ++ ..++++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999887 788888642 11 11 13467888899999
Q ss_pred HhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 148 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 148 ~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++.|++++.+ +|.+++.+ .|.+++|+++.+|.+|+|+|..+.
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9999999988 78888764 456678889999999999999875
No 106
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=5.1e-07 Score=86.78 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=80.6
Q ss_pred eEeeCCEEEEcCCCC--CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHH
Q 018671 20 FKISYDKLVIALGAE--ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 97 (352)
Q Consensus 20 ~~i~yD~LViAtGs~--~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 97 (352)
.+.-||.||+|||.. |+.|.+||..-..+.-+-+ ++...+. .+.-+.++|+|||+|++|+|
T Consensus 138 ~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~i-HS~~Yk~----------------~e~f~~k~VlVIG~g~SG~D 200 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKII-HSHDYKS----------------PEKFRDKVVLVVGCGNSGMD 200 (448)
T ss_pred eEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcce-ehhhccC----------------cccccCceEEEECCCccHHH
Confidence 577899999999976 8888888842111111000 1111110 01123479999999999999
Q ss_pred HHHHHHHhHhhHHHhhcCCCCCccEEEEEeC----CCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEECCeEE-EcCC
Q 018671 98 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----NEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLI-LNDG 172 (352)
Q Consensus 98 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~----~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~-~~~g 172 (352)
+|.+++... .+|++... ....+.. ...++..+.. |+.+++++.. +.++
T Consensus 201 Is~d~~~~a--------------k~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~-i~~~~e~~~~~~~~~ 253 (448)
T KOG1399|consen 201 ISLDLLRVA--------------KEVHLSVVSPKVHVEPPEI------------LGENLWQVPS-IKSFTEDGSVFEKGG 253 (448)
T ss_pred HHHHHHHhc--------------cCcceeeecccccccccce------------eecceEEccc-cccccCcceEEEcCc
Confidence 999998776 45555431 1111100 0012222333 7777777754 4566
Q ss_pred cEEecceEEEecCCCcc-hhhhhcC
Q 018671 173 TEVPYGLLVWSTGVGPS-TLVKSLD 196 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~-~~~~~~~ 196 (352)
....+|.+|+|||+.-. +++....
T Consensus 254 ~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 254 PVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred eeEEeeeEEEeeeeEeecceeccCC
Confidence 77899999999999876 5655443
No 107
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.44 E-value=1.5e-06 Score=82.75 Aligned_cols=93 Identities=24% Similarity=0.293 Sum_probs=68.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC----CCCc---------HHHHH-HHHHHHHh
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFD---------DRLRH-YATTQLSK 149 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----~~~~---------~~~~~-~~~~~l~~ 149 (352)
++|||||||++|+.+|..|.+.. ++.+|+++++.... |.++ .++.. ...+.+++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~------------~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD------------AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQ 70 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC------------cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHh
Confidence 38999999999999999987643 34899999875311 2221 12221 23355677
Q ss_pred CCCEEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.||+++.+ +|++++.+ .+. .+++++.||.+|+|||.+|.
T Consensus 71 ~gv~~~~~~~V~~id~~~~~v~-~~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEAQVVK-SQGNQWQYDKLVLATGASAF 112 (377)
T ss_pred CCCEEECCCEEEEEECCCCEEE-ECCeEEeCCEEEECCCCCCC
Confidence 89999988 89999875 344 46778999999999999886
No 108
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.44 E-value=1.7e-06 Score=90.15 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=72.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC----CCc--------HHHHHHHHHHHHhCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD--------DRLRHYATTQLSKSG 151 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----~~~--------~~~~~~~~~~l~~~g 151 (352)
++|||||+|++|+.+|..|.+... .++.+|++++..+.++ .++ .++.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999999976431 1237999998763322 111 122222345677889
Q ss_pred CEEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+ +|.+++.+ .|.+.+|++++||.+|+|||..|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 999998 79999875 567788889999999999999886
No 109
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.43 E-value=9.2e-06 Score=76.74 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=126.1
Q ss_pred eEeeCCEEEEcCCCCCCCCCCCCccccCcC-CCCHHHHHHHHHHHHHHHhhccCCCC----CHHHhccCCcEEEE---CC
Q 018671 20 FKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGI----SEEEKSRLLHCVVV---GG 91 (352)
Q Consensus 20 ~~i~yD~LViAtGs~~~~~~ipG~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vvVv---Gg 91 (352)
-+++.-.+|+|||-.+....-. .|+.+. +.++-...++-..+ ..+.|.. .+......++|+.| |+
T Consensus 297 ve~~vGaIIvAtGy~~~Da~~k--~EyGYG~~~nVIT~lElErml-----~~~GPT~GkvlrpSdg~~pKrVaFIqCVGS 369 (622)
T COG1148 297 VELEVGAIIVATGYKPFDATRK--EEYGYGKYPNVITNLELERML-----NPNGPTGGKVLRPSDGKPPKRVAFIQCVGS 369 (622)
T ss_pred EEEEeceEEEEccccccCcchh--hhcCCCCCcchhhHHHHHHHh-----ccCCCCCceEEecCCCCCCceEEEEEEecC
Confidence 4678889999999876544222 233222 12222222322221 1111110 11112344677765 54
Q ss_pred C-----hHHHHHHHHHHHhHhh-HHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEE-
Q 018671 92 G-----PTGVEFSGELSDFIMR-DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD- 163 (352)
Q Consensus 92 G-----~~g~e~A~~l~~~~~~-~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~- 163 (352)
- ..=+.-..-+..+.+. ..+.+|| +.+|+++-.. +-. +...-++..+.-++.||+++.+++.+|.
T Consensus 370 RD~~~~n~YCSrvCCm~slKqA~~Ike~~P----d~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRGrvaei~e 442 (622)
T COG1148 370 RDFQVGNPYCSRVCCMVSLKQAQLIKERYP----DTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRGRVAEIAE 442 (622)
T ss_pred cCcccCChhhHHHHHHHHHhhhhhhhhcCC----CcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcCChHHhee
Confidence 3 2223222222222222 2223343 4778777654 322 2233344444445789999988665554
Q ss_pred --CCe--EEEcC---C--cEEecceEEEecCCCcch----hhhhcCCCCCCCCccccC-Ccccc--CCCCCEEEEccccc
Q 018671 164 --SQK--LILND---G--TEVPYGLLVWSTGVGPST----LVKSLDLPKSPGGRIGID-EWLRV--PSVQDVFAVGDCSG 227 (352)
Q Consensus 164 --~~~--v~~~~---g--~~i~~D~vi~a~G~~~~~----~~~~~~l~~~~~G~i~Vd-~~l~~--~~~~~IfaiGD~a~ 227 (352)
++. |..+| | .++++|+|++++|..|.+ +.+.++|+.+++|++... +.++. .+.++||.+|=|..
T Consensus 443 ~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg 522 (622)
T COG1148 443 FPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG 522 (622)
T ss_pred CCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC
Confidence 333 33333 3 478999999999999863 566789999999998876 45542 25789999997764
Q ss_pred cccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 228 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 228 ~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|+..+.++.||..+|......+.
T Consensus 523 ----------PkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 523 ----------PKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ----------CccHHHHHHHhHHHHHHHHHHhh
Confidence 88999999999988876666554
No 110
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.37 E-value=2.1e-06 Score=74.10 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=61.4
Q ss_pred EEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccE-EEEEeCC-CCC--------------CC----------C-----
Q 018671 87 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS----------F----- 135 (352)
Q Consensus 87 vVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~-~~l--------------~~----------~----- 135 (352)
+|||||++|+.+|..|.+.+ .+ ++++|++ .+. |. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999998876 55 8888875 331 00 0
Q ss_pred --------------cHHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 136 --------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 136 --------------~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+++.+++++..++.++++..+ +|++++.+ .|.+++++++.||.||+|+|....
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 1345677788888899998888 79888764 478888888999999999997433
No 111
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.37 E-value=1.1e-06 Score=85.87 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=67.7
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------CC--CcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------SS--FDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~~--~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||||++|+++|..|++.+ .+|+++++. .+. |. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 44579999999999999999998866 899999986 331 22 3567777788889999
Q ss_pred CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
||+++.+... ...+.+++.. +.+|.||+|+|...
T Consensus 204 gv~~~~~~~v---~~~v~~~~~~-~~~d~vvlAtGa~~ 237 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDELR-AGYDAVFIGTGAGL 237 (457)
T ss_pred CCEEEeCCEE---CCccCHHHHH-hhCCEEEEccCCCC
Confidence 9999988422 1223333333 78999999999863
No 112
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.34 E-value=3.7e-06 Score=80.46 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=59.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------------------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------- 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------------------------------- 132 (352)
+|+|||||++|+-+|..+++.+ .+|+|+|++ ++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g--------------~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~ 67 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKG--------------ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNP 67 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT----------------EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTT
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccch
Confidence 6899999999999999998876 778888776 331
Q ss_pred -----------------------------------CCC--cHHHHHHHHHHHHhCCCEEEeC-ceEEEE--CCe---EEE
Q 018671 133 -----------------------------------SSF--DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LIL 169 (352)
Q Consensus 133 -----------------------------------~~~--~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~ 169 (352)
|.. ..++.+.+.+.+++.||+++++ +|.+++ +++ |.+
T Consensus 68 ~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~ 147 (409)
T PF03486_consen 68 KFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT 147 (409)
T ss_dssp TCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE
T ss_pred HHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec
Confidence 000 1345667777888999999999 899985 344 566
Q ss_pred cCCcEEecceEEEecCCCc
Q 018671 170 NDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 170 ~~g~~i~~D~vi~a~G~~~ 188 (352)
++++++.+|.||+|+|...
T Consensus 148 ~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 148 KNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TTTEEEEESEEEE----SS
T ss_pred cCcccccCCEEEEecCCCC
Confidence 6778999999999999765
No 113
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=4.1e-06 Score=81.41 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCCC-------Cc--------------HHH---
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-------FD--------------DRL--- 139 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~-------~~--------------~~~--- 139 (352)
.|+|||||+.|+++|..+++++ .+|+|+|+.+ .+.. .+ +++
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g--------------~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~ 70 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAG--------------KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMAT 70 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHH
Confidence 7999999999999999999877 8999999863 2110 11 111
Q ss_pred --------HHHHHHHHHhCCCEEEeCceEEEECCeEEEcC---CcEEecceEEEecCCCcc
Q 018671 140 --------RHYATTQLSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 --------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~D~vi~a~G~~~~ 189 (352)
.....+.+.+.||+++.++...+++..|.+.+ ..++.+|.+|+|||.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~ 131 (438)
T PRK07251 71 KNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSN 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCC
Confidence 11123456778999998866666677777653 247999999999999986
No 114
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.33 E-value=4e-06 Score=87.50 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=67.5
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-------CC--CcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------SS--FDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-------~~--~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||||++|+.+|..|++.+ .+|+++++.+ +. |. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45679999999999999999999876 8999999752 21 22 3445555666778889
Q ss_pred CCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
||+++.+ .+ . +.+++.....+|.||+|||..+.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 9999998 45 2 23334445679999999999864
No 115
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.33 E-value=5.5e-06 Score=81.33 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=68.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------CcH--------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD-------------------- 137 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~~-------------------- 137 (352)
..++|||||+.|+.+|..+++++ .+|+|+|+..+... .|.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 70 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLG--------------LKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFG 70 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcC
Confidence 37999999999999999999987 89999997532100 000
Q ss_pred --------H--------------HHHHHHHHHHhCCCEEEeCceEEEECC-------eEE--EcCC--cEEecceEEEec
Q 018671 138 --------R--------------LRHYATTQLSKSGVRLVRGIVKDVDSQ-------KLI--LNDG--TEVPYGLLVWST 184 (352)
Q Consensus 138 --------~--------------~~~~~~~~l~~~gV~v~~~~V~~v~~~-------~v~--~~~g--~~i~~D~vi~a~ 184 (352)
+ +.+...+.+++.||+++.+.++.++++ .+. +++| +++.+|.+|+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViAT 150 (472)
T PRK05976 71 ISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIAT 150 (472)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeC
Confidence 0 111223445677999999987778776 544 4566 579999999999
Q ss_pred CCCcch
Q 018671 185 GVGPST 190 (352)
Q Consensus 185 G~~~~~ 190 (352)
|.+|..
T Consensus 151 Gs~p~~ 156 (472)
T PRK05976 151 GSRPVE 156 (472)
T ss_pred CCCCCC
Confidence 999863
No 116
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.32 E-value=2e-06 Score=90.36 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=71.6
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 150 (352)
..+++|+|||+||+|+.+|..|++.+ .+|+++++. .+. | .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 35689999999999999999999877 899999985 221 2 24667777777889999
Q ss_pred CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCC-cc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 189 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~-~~ 189 (352)
||+++++... +..+.+++.....+|.|++|+|.. |.
T Consensus 370 Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 370 GGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred cCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 9999988321 234556665556799999999995 54
No 117
>PRK06847 hypothetical protein; Provisional
Probab=98.30 E-value=8.1e-06 Score=77.51 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+.+.|++++.+ +|++++.+ .+.+++|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 456667777777889999998 78888643 466788999999999999998775
No 118
>PRK10262 thioredoxin reductase; Provisional
Probab=98.30 E-value=7.8e-06 Score=76.03 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=66.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC------------CCC-----CcHHHHHHHHHH
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSS-----FDDRLRHYATTQ 146 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~-----~~~~~~~~~~~~ 146 (352)
++|+|||||++|+.+|..+++++ .++++++..+. +|. ..+.+.+.+.+.
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~g--------------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876 56777753211 011 123456777787
Q ss_pred HHhCCCEEEeCceEEEEC--CeEEEc-CCcEEecceEEEecCCCcc
Q 018671 147 LSKSGVRLVRGIVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 147 l~~~gV~v~~~~V~~v~~--~~v~~~-~g~~i~~D~vi~a~G~~~~ 189 (352)
....++++..++|..|+. +.+.+. +..++.+|.||+|+|..|.
T Consensus 73 ~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 73 ATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred HHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 888888887776666654 344443 2347899999999999986
No 119
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.29 E-value=6.4e-06 Score=80.30 Aligned_cols=90 Identities=23% Similarity=0.384 Sum_probs=65.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---------CC---------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------- 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~~--------------------- 134 (352)
.|+|||||+.|+.+|..+++.+ .+|+|+|+..+. |.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHG--------------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGF 69 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCc
Confidence 7999999999999999999987 899999874321 10
Q ss_pred -------Cc------------HHHHHHHHHHHHhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 135 -------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 135 -------~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++ ..+.+.+...+++.||+++.++..-.++..|.+ +|+++.+|.+|+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 70 YQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPS 142 (450)
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 00 011222445567789999988544445566665 5678999999999999986
No 120
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.26 E-value=9.9e-06 Score=76.28 Aligned_cols=88 Identities=28% Similarity=0.446 Sum_probs=63.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CC-----CCC----------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----SSF---------------------- 135 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l-----~~~---------------------- 135 (352)
.|+|||||.+|+|.|..+++.+ .+|.|+... + +. |.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 3899999999999999999988 889988543 2 21 111
Q ss_pred --------------------------c-HHHHHHHHHHHHh-CCCEEEeCceEEEECC-----eEEEcCCcEEecceEEE
Q 018671 136 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVW 182 (352)
Q Consensus 136 --------------------------~-~~~~~~~~~~l~~-~gV~v~~~~V~~v~~~-----~v~~~~g~~i~~D~vi~ 182 (352)
+ ....+.+.+.++. .+++++..+|+++..+ +|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 0 2344556666666 5899987789888542 68889999999999999
Q ss_pred ecCC
Q 018671 183 STGV 186 (352)
Q Consensus 183 a~G~ 186 (352)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9999
No 121
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=8.2e-06 Score=79.87 Aligned_cols=91 Identities=21% Similarity=0.377 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC------CCc----------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD---------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------~~~---------------------- 136 (352)
.|+|||||+.|+.+|..+++.+ .+|.|+|+..+.. ..+
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~ 71 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLG--------------LKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGI 71 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCc
Confidence 7999999999999999999987 8999998754211 000
Q ss_pred ---------HHHHHH-----------HHHHHHhCCCEEEeCceEEEECCeEEEc--C-CcEEecceEEEecCCCcc
Q 018671 137 ---------DRLRHY-----------ATTQLSKSGVRLVRGIVKDVDSQKLILN--D-GTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 ---------~~~~~~-----------~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~-g~~i~~D~vi~a~G~~~~ 189 (352)
.++.++ +...+++.||+++.++++.++++.+... + ++++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 72 KAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 111111 3345667899999988777887776664 3 368999999999999986
No 122
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.23 E-value=1e-05 Score=80.99 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=69.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC------------CC----CcHHHHHHHHHHH
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQL 147 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------~~----~~~~~~~~~~~~l 147 (352)
..|+|||||++|+.+|..+++.+ .+|+++++.++. |. .++.+.+.+.+.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 48999999999999999998866 789999875321 11 1246677777888
Q ss_pred HhCCCEEEeCceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 148 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 148 ~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++.|++++..+|.+++.+ .+...++ ++.+|.+|+|||..|.
T Consensus 71 ~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 71 QDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 889999876678887753 2444455 6899999999999886
No 123
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.23 E-value=2.5e-05 Score=76.23 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-----------------------------
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------- 132 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l----------------------------- 132 (352)
.++|+|||||++|+-+|.+|.+.+ .+|+++|+. .+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 369999999999999999998765 566666643 110
Q ss_pred ----------------CC---------------CcHHHHHHHHHHHHhCCCE--EEeC-ceEEEECC----eEEEcCC--
Q 018671 133 ----------------SS---------------FDDRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ----KLILNDG-- 172 (352)
Q Consensus 133 ----------------~~---------------~~~~~~~~~~~~l~~~gV~--v~~~-~V~~v~~~----~v~~~~g-- 172 (352)
|. -..++.+++++..++.|++ ++.+ +|++|+.. .|.+.++
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 00 0135677778888888988 7777 79988763 3444432
Q ss_pred c--EEecceEEEecCCC
Q 018671 173 T--EVPYGLLVWSTGVG 187 (352)
Q Consensus 173 ~--~i~~D~vi~a~G~~ 187 (352)
. +..+|.||+|+|..
T Consensus 156 ~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHY 172 (461)
T ss_pred ceEEEEcCEEEEeccCC
Confidence 2 46799999999953
No 124
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.22 E-value=1.4e-05 Score=78.32 Aligned_cols=92 Identities=23% Similarity=0.392 Sum_probs=67.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC-----C-CcH--------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----S-FDD-------------------- 137 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----~-~~~-------------------- 137 (352)
++++|||+|+.|+++|..+++++ .+|+++++.++.. . .|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g--------------~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g 67 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLG--------------ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELG 67 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999877 8899998754210 0 000
Q ss_pred --------------H-----------HHHHHHHHHHhCCCEEEeCceEE----EECCeEEE--cCCc--EEecceEEEec
Q 018671 138 --------------R-----------LRHYATTQLSKSGVRLVRGIVKD----VDSQKLIL--NDGT--EVPYGLLVWST 184 (352)
Q Consensus 138 --------------~-----------~~~~~~~~l~~~gV~v~~~~V~~----v~~~~v~~--~~g~--~i~~D~vi~a~ 184 (352)
. ..+...+.|++.||+++.+++.. ++++.+.. .+|+ ++.+|.+|+||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViAT 147 (466)
T PRK07845 68 IRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIAT 147 (466)
T ss_pred cccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcC
Confidence 0 01234455777899999986665 55666554 4665 79999999999
Q ss_pred CCCcc
Q 018671 185 GVGPS 189 (352)
Q Consensus 185 G~~~~ 189 (352)
|.+|.
T Consensus 148 Gs~p~ 152 (466)
T PRK07845 148 GASPR 152 (466)
T ss_pred CCCCC
Confidence 99986
No 125
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.22 E-value=8.7e-05 Score=63.51 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=92.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC-------Cc--------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD-------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-------~~-------------------- 136 (352)
.|+|||+||+|+.+|.+|++.+ .+|.++++. .+... |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 7999999999999999999876 899999986 33211 11
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEE--ECC----eEEEc-----------CCcEEecceEEEecCCC
Q 018671 137 -----------DRLRHYATTQLSKSGVRLVRG-IVKDV--DSQ----KLILN-----------DGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 -----------~~~~~~~~~~l~~~gV~v~~~-~V~~v--~~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 187 (352)
.++...+....-+.|+++... .|+++ .++ +|.++ |--.++++.||=+||+.
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 111112222223456666666 55554 222 22221 22368999999999998
Q ss_pred cc--hhh-hhc---CCCCCCC--------CccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHH
Q 018671 188 PS--TLV-KSL---DLPKSPG--------GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 253 (352)
Q Consensus 188 ~~--~~~-~~~---~l~~~~~--------G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~ 253 (352)
+. .++ +.. +...... -.+.|+.+.+ -+|++|++|=+++-.. |.+.+-++--.-..+|+.+|+
T Consensus 178 a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~~av~--G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 178 AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAVNAVH--GLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhHHhhc--CCcccCchhhhhhhchHHHHH
Confidence 86 232 222 2221111 1234444444 3899999998765322 322233333344577889998
Q ss_pred HHHHHhh
Q 018671 254 LLNRIGK 260 (352)
Q Consensus 254 ~i~~~~~ 260 (352)
.+...++
T Consensus 254 ~i~e~L~ 260 (262)
T COG1635 254 EILEKLK 260 (262)
T ss_pred HHHHHhh
Confidence 7766543
No 126
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.17 E-value=5.2e-06 Score=80.87 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=67.9
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~-------l~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||+|++|+++|..|++.+ .+|+++++. .+ .| .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 34579999999999999999998876 899999975 22 12 24567777777888999
Q ss_pred CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCC-Ccc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 189 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~-~~~ 189 (352)
||+++.+.+. ...+.+++. ...+|.||+|+|. .|.
T Consensus 197 gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 197 GVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred CcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 9999988422 223444333 3569999999998 454
No 127
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.17 E-value=1.8e-05 Score=77.39 Aligned_cols=91 Identities=23% Similarity=0.348 Sum_probs=67.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCcHH-------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDDR------------------- 138 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~------~~~~~------------------- 138 (352)
.|+|||||++|+.+|..+++.+ .+|+++|+. .+.. ..+.+
T Consensus 7 DvvVIGaGpaG~~aA~~la~~G--------------~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~ 72 (461)
T PRK05249 7 DLVVIGSGPAGEGAAMQAAKLG--------------KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYS 72 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhc
Confidence 7999999999999999999987 899999975 3311 01110
Q ss_pred -----------------------HHHHHHHHHHhCCCEEEeCceEEEECCeEEE--cCCc--EEecceEEEecCCCcc
Q 018671 139 -----------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 -----------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~D~vi~a~G~~~~ 189 (352)
..+.+.+.+++.||+++.+++..++.+.+.. .+|+ ++.+|.+|+|||.+|.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 73 SYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 1112334566789999988777777776544 4564 7999999999999986
No 128
>PLN02463 lycopene beta cyclase
Probab=98.16 E-value=1.6e-05 Score=77.16 Aligned_cols=92 Identities=25% Similarity=0.421 Sum_probs=67.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC--CCCC---------------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSS--------------------------- 134 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~--------------------------- 134 (352)
..|+|||||++|+.+|..|++.+ .+|.++++.+ ..|.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVV 94 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEE
Confidence 48999999999999999998765 6777776542 1110
Q ss_pred -----------------CcHHHHHHHHHHHHhCCCEEEeCceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 135 -----------------FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 135 -----------------~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
....+.+.+.+.+.+.||+++..+|++++.+ .|.+++|+++.+|.||.|+|....
T Consensus 95 ~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 95 YIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred EEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0123334555566678999986678887643 477789989999999999998754
No 129
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.16 E-value=1.6e-05 Score=77.43 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=64.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-CCC------CCcHH-----------H------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILS------SFDDR-----------L------ 139 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~------~~~~~-----------~------ 139 (352)
.|+|||||+.|+.+|..+++.+ .+|+|+++. . +.. ..+.. +
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g--------------~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~ 70 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAG--------------WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQR 70 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCC--------------CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHH
Confidence 7999999999999999999876 899999975 2 211 01110 0
Q ss_pred ----HHHH----HHHHHhC-CCEEEeCceEEEECCeEEE--cCCc-EEecceEEEecCCCcc
Q 018671 140 ----RHYA----TTQLSKS-GVRLVRGIVKDVDSQKLIL--NDGT-EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ----~~~~----~~~l~~~-gV~v~~~~V~~v~~~~v~~--~~g~-~i~~D~vi~a~G~~~~ 189 (352)
...+ .+.+.+. ||+++.+++..++.+.+.+ .+|+ ++.+|.+|+|||.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~ 132 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV 132 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC
Confidence 0111 1233333 8999988887888776544 4664 6999999999999986
No 130
>PLN02546 glutathione reductase
Probab=98.15 E-value=2.2e-05 Score=78.26 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=69.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC----------CCCC---------C-----------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEIL---------S----------- 133 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~----------~~~l---------~----------- 133 (352)
-.|+|||+|+.|++.|..+++++ .+|.|+|. +.+. |
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~ 145 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFG--------------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYS 145 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHH
Confidence 36999999999999999999988 89999994 1110 0
Q ss_pred -------CCc----------------------HHHHHHHHHHHHhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEec
Q 018671 134 -------SFD----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWST 184 (352)
Q Consensus 134 -------~~~----------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~ 184 (352)
.++ .++.+.+.+.|++.||+++.++.+.++++.|.. +|+++.+|.+|+||
T Consensus 146 ~~~~~~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIAT 224 (558)
T PLN02546 146 HEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAV 224 (558)
T ss_pred HHHHhhhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeC
Confidence 000 012233445577789999999888888888877 67789999999999
Q ss_pred CCCcc
Q 018671 185 GVGPS 189 (352)
Q Consensus 185 G~~~~ 189 (352)
|.+|.
T Consensus 225 Gs~p~ 229 (558)
T PLN02546 225 GGRPF 229 (558)
T ss_pred CCCCC
Confidence 99986
No 131
>PRK06370 mercuric reductase; Validated
Probab=98.15 E-value=1.5e-05 Score=77.96 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=66.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------CcH--------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD-------------------- 137 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~~-------------------- 137 (352)
..|+|||+|+.|+.+|..+++++ .+|+|+++..+... .|.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 71 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLG--------------MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYG 71 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999987 89999997532110 000
Q ss_pred ------------H-----------HHHHHHHHHHhC-CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 138 ------------R-----------LRHYATTQLSKS-GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ------------~-----------~~~~~~~~l~~~-gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
. ......+.+++. ||+++.+....+++..|.+ +++++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 72 VSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAA 146 (463)
T ss_pred cccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCC
Confidence 0 112233456666 9999988544556667766 4678999999999999987
No 132
>PRK12831 putative oxidoreductase; Provisional
Probab=98.14 E-value=6.2e-06 Score=80.65 Aligned_cols=92 Identities=21% Similarity=0.391 Sum_probs=67.1
Q ss_pred hccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-C---C----CC--CcHH-HHHHHHHHHH
Q 018671 80 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----SS--FDDR-LRHYATTQLS 148 (352)
Q Consensus 80 ~~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~---l----~~--~~~~-~~~~~~~~l~ 148 (352)
....++|+|||||++|+.+|..|++.+ .+|+++++.+ + + |. ++.+ +.....+.++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~ 202 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIK 202 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHH
Confidence 346689999999999999999999876 8999999752 2 1 22 2223 6666677888
Q ss_pred hCCCEEEeCc-eEEEECCeEEEcCC-cEEecceEEEecCC-Ccc
Q 018671 149 KSGVRLVRGI-VKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 189 (352)
Q Consensus 149 ~~gV~v~~~~-V~~v~~~~v~~~~g-~~i~~D~vi~a~G~-~~~ 189 (352)
+.||+++.+. +. ..+.+++. +.+.+|.||+|+|. .|.
T Consensus 203 ~~gv~i~~~~~v~----~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 203 KLGVKIETNVVVG----KTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred HcCCEEEcCCEEC----CcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 9999999884 41 22333333 34679999999998 454
No 133
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.13 E-value=1.8e-05 Score=77.42 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------Cc----------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~---------------------- 136 (352)
.|+|||||+.|+.+|..+++++ .+|+|+|+..+... .|
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~ 67 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELG--------------ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGL 67 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccc
Confidence 5899999999999999999987 89999997432111 00
Q ss_pred ---------------HHHHHH-----HHHHHHhCCCEEEeCceEEEECCeEEEcCCc-EEecceEEEecCCCcc
Q 018671 137 ---------------DRLRHY-----ATTQLSKSGVRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 ---------------~~~~~~-----~~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~-~i~~D~vi~a~G~~~~ 189 (352)
.++.+. ..+.+++.||+++.+++..+++..|.+++|+ .+.+|.+|+|||.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~ 141 (463)
T TIGR02053 68 AATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPA 141 (463)
T ss_pred cCCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCC
Confidence 011111 2345677899999887767777788887764 6899999999999986
No 134
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.12 E-value=8.4e-06 Score=76.89 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=62.8
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC---------CcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~---------~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||+|++|+++|..|++.+ .+|+++++. .+.+. .+.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 3469999999999999999998765 899999986 33211 23333444556677789
Q ss_pred CEEEeC-ceEEEEC------CeEE--E--cCCcEEecceEEEecCCC
Q 018671 152 VRLVRG-IVKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 152 V~v~~~-~V~~v~~------~~v~--~--~~g~~i~~D~vi~a~G~~ 187 (352)
++++.+ .+..++. +... . .++..+.+|.||+|+|..
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 999988 5544322 1111 1 111247899999999984
No 135
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.12 E-value=2.6e-05 Score=76.50 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=66.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC------CCcH-------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------SFDD------------------- 137 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~------~~~~------------------- 137 (352)
..|+|||||+.|+.+|..+++++ .+|+|+++. .+.. -.|.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~ 70 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLG--------------LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEH 70 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhc
Confidence 38999999999999999999887 899999975 3311 0111
Q ss_pred ------------HHH-----------HHHHHHHHhCCCEEEeCceEEEECCeEEEc--CC--cEEecceEEEecCCCcc
Q 018671 138 ------------RLR-----------HYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ------------~~~-----------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~D~vi~a~G~~~~ 189 (352)
.+. +.....+++.||+++.+...-++++.+.+. +| +++.+|.+|+|||.+|.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 71 GIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 111 111233566799999887666777776553 55 47999999999999985
No 136
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.11 E-value=8e-06 Score=84.68 Aligned_cols=92 Identities=25% Similarity=0.466 Sum_probs=69.1
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC---C----C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---L----S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~---l----~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||||++|+.+|..|++.+ .+|+++++. .+ + | .++.++.....+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 45679999999999999999999876 899999974 22 1 2 23566666667788899
Q ss_pred CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCC-cc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 189 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~-~~ 189 (352)
||+++.+... ...+.+++..+..+|.||+|+|.. |.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999988422 233445444456799999999984 54
No 137
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.11 E-value=1.3e-05 Score=78.89 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=64.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~--~~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||+|++|+++|..|++.+ .+|+++++. .+. | .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 4579999999999999999998866 899999876 331 2 235566666778889999
Q ss_pred CEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCC
Q 018671 152 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 152 V~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 187 (352)
|+++.+ .+. .+ +. .++....+|.|++|+|..
T Consensus 208 v~~~~~~~v~-~~---~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIG-VD---IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeC-Cc---cC-HHHHHhhCCEEEEccCCC
Confidence 999988 442 11 11 111235799999999998
No 138
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.09 E-value=8.7e-06 Score=79.51 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=62.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC--------CCC--cHHHHHHHHHHHHhC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SSF--DDRLRHYATTQLSKS 150 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l--------~~~--~~~~~~~~~~~l~~~ 150 (352)
..++|+|||+||+|+.+|..|+... .+.+|+|+++.+ .. |.. ...+...+.+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4469999999999999999998621 128999999863 21 211 123444556667778
Q ss_pred CCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+|+++.+ .| +..+.+++-. ..+|.||+|+|..+.
T Consensus 93 ~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 9998887 44 2233443332 369999999999863
No 139
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.4e-05 Score=70.91 Aligned_cols=91 Identities=24% Similarity=0.377 Sum_probs=69.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccE-EEEEeCCCC------------CC-----CCcHHHHHHHHHH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYATTQ 146 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~------------l~-----~~~~~~~~~~~~~ 146 (352)
.|+||||||+|+..|.++++.. .+ +.+++.... .| ...+++.+...+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999998876 34 444443211 11 2457888888888
Q ss_pred HHhCCCEEEeCceEEEECC----eEEEcCCcEEecceEEEecCCCcch
Q 018671 147 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 147 l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
....++++....|.+++.. .|.+++|+ +.++.||+|+|..+..
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 8889999988778888765 35556666 9999999999998874
No 140
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.06 E-value=2.4e-05 Score=74.26 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=64.5
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCC---------CCcHHHH---------------
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDDRLR--------------- 140 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~---------~~~~~~~--------------- 140 (352)
|+|||||++|+.+|..|++.. ++.+|.++|+.+ +.+ ..++...
T Consensus 2 viIvGaG~AGl~lA~~L~~~~------------~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRAR------------PDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 799999999999999998641 237899998863 221 1111110
Q ss_pred -------------------HHHHHH-HHhCCCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcch
Q 018671 141 -------------------HYATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 141 -------------------~~~~~~-l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
..+.+. +++.+..++.+ +|+++++++|++++|+++.+|.||.|.|..+.+
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCCc
Confidence 111122 22224446666 899999999999999999999999999988753
No 141
>PRK07236 hypothetical protein; Provisional
Probab=98.06 E-value=2.5e-05 Score=74.58 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=63.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCCC------CcHHHHHHHH------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYAT------------ 144 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~------~~~~~~~~~~------------ 144 (352)
.+|+|||||++|+.+|..|++.+ .+|+++|+.+ ..+. +.+...+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 48999999999999999999876 7888888752 2211 1222222211
Q ss_pred -------------------------------HHHHh--CCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCC
Q 018671 145 -------------------------------TQLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 186 (352)
Q Consensus 145 -------------------------------~~l~~--~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 186 (352)
+.|.+ .+++++.+ +|++++.+ .+.+++|+++.+|.||.|-|.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 11211 13567777 78888643 367789999999999999998
Q ss_pred Ccc
Q 018671 187 GPS 189 (352)
Q Consensus 187 ~~~ 189 (352)
...
T Consensus 153 ~S~ 155 (386)
T PRK07236 153 RST 155 (386)
T ss_pred Cch
Confidence 765
No 142
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.06 E-value=1.2e-05 Score=85.46 Aligned_cols=92 Identities=20% Similarity=0.393 Sum_probs=67.9
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-C---C----C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~---l----~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||||++|+.+|..|++.+ .+|+++++.+ + + | .++.++.....+.+++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~ 493 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDI 493 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHC
Confidence 34679999999999999999999887 8999999862 2 1 2 23567788888889999
Q ss_pred CCEEEeCceEEEECCeEEEcCC-cEEecceEEEecCCC-cc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGVG-PS 189 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g-~~i~~D~vi~a~G~~-~~ 189 (352)
||+++++.+.. ..+.+.+- +...+|.||+|+|.. |.
T Consensus 494 Gv~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 494 GVKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CCEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 99999984321 12222221 124599999999985 44
No 143
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.04 E-value=1.9e-05 Score=74.77 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=73.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCC-----------cHHHHHHHHHHHHhCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF-----------DDRLRHYATTQLSKSG 151 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~-----------~~~~~~~~~~~l~~~g 151 (352)
.++|+|||+|+.|.-++..+...+ ..-+++|+.+..++|.. .........+.+++.|
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g------------~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~g 141 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVG------------FTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKG 141 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhC------------CCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcC
Confidence 469999999999877777776654 22677888766544432 2344555667889999
Q ss_pred CEEEeC-ceEEEEC--CeEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~-~V~~v~~--~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+ .|+.++- .++.+.+|+.+++|.+++|||..+.
T Consensus 142 Ie~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 142 IELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred ceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence 999999 7888764 5899999999999999999999655
No 144
>PLN02661 Putative thiazole synthesis
Probab=98.04 E-value=0.00016 Score=67.27 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=91.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCC----------C-----------------Cc
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------S-----------------FD 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~----------~-----------------~~ 136 (352)
.|+|||+|++|+-+|..+++.. +.+|+++++.. ... . ++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~-------------g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNP-------------NVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcC-------------CCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 8999999999999999998631 26888888752 210 0 00
Q ss_pred -----------HHHHHHHHH-HHHhCCCEEEeC-ceEEEEC--C---eEEE------cC--C------cEEecceEEEec
Q 018671 137 -----------DRLRHYATT-QLSKSGVRLVRG-IVKDVDS--Q---KLIL------ND--G------TEVPYGLLVWST 184 (352)
Q Consensus 137 -----------~~~~~~~~~-~l~~~gV~v~~~-~V~~v~~--~---~v~~------~~--g------~~i~~D~vi~a~ 184 (352)
......+.+ .+++.||+++.+ .+.++.. + ++.+ .+ + ..+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 111112232 334468998888 6666532 2 2332 11 1 268999999999
Q ss_pred CCCcch---hhhh---cCCCC----------CCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHH
Q 018671 185 GVGPST---LVKS---LDLPK----------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 248 (352)
Q Consensus 185 G~~~~~---~~~~---~~l~~----------~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg 248 (352)
|..++. ..+. +++.. +..-...|+.+-++ +|++|+.|-.++-.+ |.+.+-++--.-...|
T Consensus 241 Gh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g~~rmgp~fg~m~~sg 316 (357)
T PLN02661 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--GSPRMGPTFGAMMISG 316 (357)
T ss_pred CCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--CCCccCchhHhHHhhh
Confidence 987641 1111 22100 00001223333333 899999998775322 3333344444445789
Q ss_pred HHHHHHHHHHhh
Q 018671 249 KYLFSLLNRIGK 260 (352)
Q Consensus 249 ~~~a~~i~~~~~ 260 (352)
+.+|+.|...++
T Consensus 317 ~k~a~~~~~~l~ 328 (357)
T PLN02661 317 QKAAHLALKALG 328 (357)
T ss_pred HHHHHHHHHHHc
Confidence 999998887765
No 145
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.04 E-value=0.00011 Score=67.78 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=50.9
Q ss_pred cEEecceEEEecCCCcchhhhhcCCCC------CCCCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHH
Q 018671 173 TEVPYGLLVWSTGVGPSTLVKSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAER 246 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~~~~~~~l~~------~~~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~ 246 (352)
++++|++++.+.|++..++....++.. +..|++.+ +.-.|++|+.|=|..- | ......+++
T Consensus 327 e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~-----s~~~pglY~sGW~k~G--P------~GvIattm~ 393 (468)
T KOG1800|consen 327 ETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLV-----SGCSPGLYASGWVKHG--P------TGVIATTMQ 393 (468)
T ss_pred EeeccceeEeeeeecccccCCCCCcccccCcccCCCceEEe-----eccCCceEEEeeeccC--C------cceeeehhh
Confidence 579999999999999876554433321 22344431 1136999999988852 1 334556788
Q ss_pred HHHHHHHHHHHHhh
Q 018671 247 QGKYLFSLLNRIGK 260 (352)
Q Consensus 247 qg~~~a~~i~~~~~ 260 (352)
+|..+|..|.+.++
T Consensus 394 dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 394 DAFEVADTIVQDLK 407 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888887765
No 146
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.03 E-value=2.1e-05 Score=82.52 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=65.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-------CC--CcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------SS--FDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-------~~--~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||||++|+.+|..|++.+ .+|+++++.+ +. |. ++.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999999876 8999999752 21 22 34555556667788899
Q ss_pred CEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+.-. .+.+.+.+...+|.||+|+|..+.
T Consensus 602 Ve~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 602 VEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cEEEEeccc-----ceEhhhhhcccccEEEECCCCCCC
Confidence 999887211 122333345679999999999864
No 147
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.01 E-value=4.8e-05 Score=74.45 Aligned_cols=91 Identities=22% Similarity=0.365 Sum_probs=63.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC------CcH-------HH------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD-------RL------------ 139 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------~~~-------~~------------ 139 (352)
.|+|||||++|+.+|..+++.+ .+|+++|+..+... +|. ++
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G--------------~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~ 68 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLG--------------LKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI 68 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC
Confidence 6999999999999999999877 89999997433110 010 00
Q ss_pred -----------------------HHHHHHHHHhCCCEEEeCceEEEECCeEEEc--CC-cEEecceEEEecCCCcc
Q 018671 140 -----------------------RHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG-TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 -----------------------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g-~~i~~D~vi~a~G~~~~ 189 (352)
.......+++.||+++.+++..+++..+... +| .++.+|.+|+|||.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~ 144 (461)
T TIGR01350 69 EVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPR 144 (461)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCC
Confidence 0111223455688888886666677766554 33 47999999999999886
No 148
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.01 E-value=2e-05 Score=77.14 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=66.4
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-------C--CCcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||+|++|+++|..|+..+ .+|++++... +. | .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 5679999999999999999998876 8899998763 21 2 245666677778899999
Q ss_pred CEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 999988 4521 122222 12469999999999874
No 149
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=5.1e-05 Score=74.22 Aligned_cols=91 Identities=20% Similarity=0.322 Sum_probs=65.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---------C------------------C---
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S------------------S--- 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~------------------~--- 134 (352)
+|+|||+|+.|+..|..+++.+ .+|+++++..+. | .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g--------------~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~ 67 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG--------------KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGI 67 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCc
Confidence 7999999999999999999876 899999975321 1 0
Q ss_pred --------Cc-HHH-----------HHHHHHHHHhCCCEEEeCceEEEECCeEEEc--CC-cEEecceEEEecCCCcc
Q 018671 135 --------FD-DRL-----------RHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG-TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 135 --------~~-~~~-----------~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g-~~i~~D~vi~a~G~~~~ 189 (352)
.+ ..+ .+.....+++.+|+++.+++..+++..+... ++ +++.+|.+|+|||.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 68 TLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 00 001 1112233556789998887777777766553 44 37999999999999986
No 150
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.98 E-value=5.6e-05 Score=70.72 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEEC--Ce---EEEcCCcEEecceEEEecCCCcchhhhhcCC
Q 018671 141 HYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 197 (352)
Q Consensus 141 ~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l 197 (352)
..+.+.+++.|++++.+ +|++++. +. |.+++|+ +.+|.||+|+|.....++..++.
T Consensus 151 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 151 QALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred hhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 33444455789999999 8998874 33 6778887 99999999999877666666654
No 151
>PRK06834 hypothetical protein; Provisional
Probab=97.97 E-value=8.7e-05 Score=73.10 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++.||+++.+ +|++++.+ .+++.+|+++.+|.||.|.|....
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 34455666677789999998 78888643 355667888999999999999774
No 152
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.97 E-value=0.00013 Score=69.88 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcchhhhhcCC
Q 018671 138 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 197 (352)
Q Consensus 138 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l 197 (352)
.+.+.+.+.+++.|++++.+ +|++++.+ .+++++|+++.+|.||.|.|.... +-+.+++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~ 177 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGL 177 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcC
Confidence 44556666777889999988 78888643 356678889999999999999874 3333443
No 153
>PRK14694 putative mercuric reductase; Provisional
Probab=97.94 E-value=9.6e-05 Score=72.50 Aligned_cols=92 Identities=27% Similarity=0.399 Sum_probs=64.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---------------------------C---
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------------------------S--- 133 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------------------------~--- 133 (352)
..|+|||||++|+.+|..+++.+ .+|.+|+++.+. +
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g--------------~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~ 72 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERG--------------ARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDD 72 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccC
Confidence 37999999999999999999987 788999865320 0
Q ss_pred CC-------c-HHHHHHH------------HHHHHhC-CCEEEeCceEEEECCe--EEEcCC--cEEecceEEEecCCCc
Q 018671 134 SF-------D-DRLRHYA------------TTQLSKS-GVRLVRGIVKDVDSQK--LILNDG--TEVPYGLLVWSTGVGP 188 (352)
Q Consensus 134 ~~-------~-~~~~~~~------------~~~l~~~-gV~v~~~~V~~v~~~~--v~~~~g--~~i~~D~vi~a~G~~~ 188 (352)
.+ + ..+.+.. ...+++. +|+++.+++..++.+. |.+.+| +++.+|.+|+|||.+|
T Consensus 73 g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 73 GLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CcccCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCC
Confidence 00 0 0111111 1123333 8999988888888875 445666 3799999999999998
Q ss_pred c
Q 018671 189 S 189 (352)
Q Consensus 189 ~ 189 (352)
.
T Consensus 153 ~ 153 (468)
T PRK14694 153 A 153 (468)
T ss_pred C
Confidence 6
No 154
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.92 E-value=0.00011 Score=67.02 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=66.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC-------------------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 133 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 133 (352)
.|+|||||++|+-+|..|++.+ .+|+++|+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 6899999999999999998765 6777777652100
Q ss_pred --------------------CCcHHHHHHHHHHHHhCCCEEEeC-ceEEEE--CCe--EEEcC-CcEEecceEEEecCCC
Q 018671 134 --------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 187 (352)
Q Consensus 134 --------------------~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~--v~~~~-g~~i~~D~vi~a~G~~ 187 (352)
-....+.+.+.+.+.+.|++++.+ +++++. ++. +.+.+ +.++.+|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 001345566777778889999988 787754 343 33444 4679999999999986
Q ss_pred cc
Q 018671 188 PS 189 (352)
Q Consensus 188 ~~ 189 (352)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 53
No 155
>PTZ00058 glutathione reductase; Provisional
Probab=97.91 E-value=0.00013 Score=72.93 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||||+.|..+|..+++.+ .+|.+||+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G--------------~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNK--------------AKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecc
Confidence 6999999999999999999987 789999864
No 156
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00046 Score=67.07 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=80.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccE-EEEEeCC-CCC----------------------CCC----
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL----------------------SSF---- 135 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~-~~l----------------------~~~---- 135 (352)
..|+|||||++|+-+|..|.+.+ .. +.++|+. ++. |.+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999999887 33 6666654 221 100
Q ss_pred ------cHHHHHHHHHHHHhCCCEEEe--C-ceEEEE--CC----eEEEcCCcE--EecceEEEecCCCcchhhhhcCCC
Q 018671 136 ------DDRLRHYATTQLSKSGVRLVR--G-IVKDVD--SQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSLDLP 198 (352)
Q Consensus 136 ------~~~~~~~~~~~l~~~gV~v~~--~-~V~~v~--~~----~v~~~~g~~--i~~D~vi~a~G~~~~~~~~~~~l~ 198 (352)
...+..++.+.++++++.... + .|+.++ .+ .|++++|.+ +.+|.||+|||.-..+.+....-.
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~ 154 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL 154 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc
Confidence 123788899999998876542 2 344443 33 477777755 559999999999655544443211
Q ss_pred CCCCCccccCCc----cccCCCCCEEEEccccc
Q 018671 199 KSPGGRIGIDEW----LRVPSVQDVFAVGDCSG 227 (352)
Q Consensus 199 ~~~~G~i~Vd~~----l~~~~~~~IfaiGD~a~ 227 (352)
.+..|.+.--.. ... ..++|-+||--++
T Consensus 155 ~~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaS 186 (443)
T COG2072 155 DEFKGRILHSADWPNPEDL-RGKRVLVIGAGAS 186 (443)
T ss_pred cCCCceEEchhcCCCcccc-CCCeEEEECCCcc
Confidence 122344332211 112 3467888886553
No 157
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=0.00014 Score=71.07 Aligned_cols=90 Identities=22% Similarity=0.374 Sum_probs=63.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC---------------------------CC--
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------SF-- 135 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~---------------------------~~-- 135 (352)
.|+|||||+.|+.+|..+++.+ .+|.+|+++.+.. .+
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi 70 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLG--------------KKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGI 70 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999876 8899998742210 00
Q ss_pred -------c-HHHHHHH------------HHHHHhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCC-cc
Q 018671 136 -------D-DRLRHYA------------TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 189 (352)
Q Consensus 136 -------~-~~~~~~~------------~~~l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~-~~ 189 (352)
+ +++.+.. ...++..+|+++.+....++...+.+ +++++.+|.+|+|||.+ |+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ 144 (460)
T PRK06292 71 HADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPP 144 (460)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCC
Confidence 0 1111111 12244567888777666667777766 67789999999999998 54
No 158
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.87 E-value=0.00017 Score=68.96 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHHHHHHHHhC-CCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 140 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+. +|+++.+ ++++++.+ .+.+.+|+++.+|.||.|.|....
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 34445555555 4999988 78888643 356678888999999999998765
No 159
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.86 E-value=0.00016 Score=72.07 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=62.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC------CC---------------C-------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SS---------------F------- 135 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------~~---------------~------- 135 (352)
.|+|||||++|+++|..+++.+ .+|.|+++. +.+ |. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999877 777777764 111 00 0
Q ss_pred --------------------------c-HHHHHHHHHHHHhC-CCEEEeCceEEEE--CC---eEEEcCCcEEecceEEE
Q 018671 136 --------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 182 (352)
Q Consensus 136 --------------------------~-~~~~~~~~~~l~~~-gV~v~~~~V~~v~--~~---~v~~~~g~~i~~D~vi~ 182 (352)
+ ......+.+.+.+. |++++...|.++. ++ +|.+.+|.++.++.||.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 0 01123333444444 8888766777764 33 47788899999999999
Q ss_pred ecCCC
Q 018671 183 STGVG 187 (352)
Q Consensus 183 a~G~~ 187 (352)
|+|..
T Consensus 152 ATGTF 156 (618)
T PRK05192 152 TTGTF 156 (618)
T ss_pred eeCcc
Confidence 99953
No 160
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.85 E-value=0.00018 Score=68.95 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcchhhhhcCC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 197 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l 197 (352)
..+.+.+.+.+.+.|++++.+ +|++++.+ .+++++|+++.+|.||.|.|.... +.+.+++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~ 175 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGI 175 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCC
Confidence 455666777778889999988 78888643 366778889999999999998765 3333443
No 161
>PRK07588 hypothetical protein; Provisional
Probab=97.85 E-value=0.00017 Score=69.02 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+++++.+ +|++++.+ .|.+++|+++.+|+||-|-|....
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 47999988 78888643 366789999999999999998654
No 162
>PLN02507 glutathione reductase
Probab=97.85 E-value=0.00019 Score=70.98 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=65.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC----------CCCCC------CCcHH----------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEILS------SFDDR---------- 138 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~----------~~~l~------~~~~~---------- 138 (352)
.++|||+|+.|+.+|..+++++ .+|.|+|. +.+.. -.|.+
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G--------------~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~ 92 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFG--------------AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGG 92 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHH
Confidence 6999999999999999999987 89999994 11110 00100
Q ss_pred ---------------------------------HHHHHHHHHHhCCCEEEeCceEEEECCeEEE--cCCc--EEecceEE
Q 018671 139 ---------------------------------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLV 181 (352)
Q Consensus 139 ---------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~D~vi 181 (352)
+.....+.+++.||+++.+++..++++.+.. .+|+ ++.+|.+|
T Consensus 93 ~~~~~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LI 172 (499)
T PLN02507 93 EFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHIL 172 (499)
T ss_pred HHHHHHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEE
Confidence 0111223455679999999888888886554 5665 58899999
Q ss_pred EecCCCcc
Q 018671 182 WSTGVGPS 189 (352)
Q Consensus 182 ~a~G~~~~ 189 (352)
+|||.+|.
T Consensus 173 IATGs~p~ 180 (499)
T PLN02507 173 IATGSRAQ 180 (499)
T ss_pred EecCCCCC
Confidence 99999986
No 163
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.85 E-value=5.3e-05 Score=74.34 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=64.7
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||+|++|+.+|..|++.+ .+|+++++. .+. | .++.++.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 34579999999999999999998876 899999976 321 1 23556666667788999
Q ss_pred CCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCc
Q 018671 151 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 151 gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
||+++.+.....+ +.. +.....+|.||+|+|..+
T Consensus 207 gv~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 207 GIEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred CcEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCCC
Confidence 9999988422211 111 111357999999999973
No 164
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.84 E-value=0.00019 Score=68.50 Aligned_cols=89 Identities=26% Similarity=0.418 Sum_probs=63.1
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-------------------------------
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------- 133 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~------------------------------- 133 (352)
|+|||||++|+.+|..|++.+ .+|+|+|+. .+..
T Consensus 2 viIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 899999999999999998755 566666643 1100
Q ss_pred -------------CC-cHHHHHHHHHHHHhCCCEEEeCceEEEECC-----eEEEcCCcEEecceEEEecCCCc
Q 018671 134 -------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 134 -------------~~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
.+ ...+.+.+.+.+.+.|++++.++|..++.+ .|++++|+++.++.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 123445555666777998876677776543 35667888999999999999876
No 165
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.82 E-value=5.8e-05 Score=76.81 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=66.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-------C--CCcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||+|++|+..|..|+..+ .+|+++++.. +. | .++..+.+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4689999999999999999999876 8899999863 21 1 246667676778889999
Q ss_pred CEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+ .+.. .+.+++ ....+|.|++++|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 999988 4521 122222 13469999999998754
No 166
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.81 E-value=6.1e-05 Score=76.77 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=65.9
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC-------CC--CCcHHHHHHHHHHHHhCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-------LS--SFDDRLRHYATTQLSKSG 151 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~-------l~--~~~~~~~~~~~~~l~~~g 151 (352)
..++|+|||+|++|+.+|..|+..+ .+|+++++. .+ .| .++.++.+...+.+.+.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4579999999999999999999876 899999986 33 12 245666677778888999
Q ss_pred CEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+....+ .+.+.+. ...+|.||+|+|..+.
T Consensus 258 v~i~~~~~v~~---dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGR---DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccC---ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 99998843221 1222222 2359999999998754
No 167
>PLN02697 lycopene epsilon cyclase
Probab=97.81 E-value=0.00023 Score=70.35 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=64.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC----------------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------- 134 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~---------------------------- 134 (352)
..|+|||||++|+.+|..+++.+ .+|.++++. .+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 58999999999999999998765 555555543 11000
Q ss_pred --------------C-cHHHHHHHHHHHHhCCCEEEeCceEEEEC--Ce---EEEcCCcEEecceEEEecCCCcc
Q 018671 135 --------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 135 --------------~-~~~~~~~~~~~l~~~gV~v~~~~V~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+ ...+.+.+.+.+.+.|++++..+|++++. +. +.+.+|+++.++.||.|+|....
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 0 12334555566677899986558888863 33 34578889999999999998763
No 168
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00017 Score=70.68 Aligned_cols=92 Identities=20% Similarity=0.340 Sum_probs=59.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC------CcHHH------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRL------------------ 139 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~------~~~~~------------------ 139 (352)
.|+|||+||.|+.+|..+++.+ .+|+|++.. .+... .|.+.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G--------------~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~ 70 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLG--------------LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAH 70 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhh
Confidence 7999999999999999999987 899999962 32110 11000
Q ss_pred -----------H--------------HHHHHHHHhCCCEEEeCceEEEECCeEEE--cCCc--EEecceEEEecCCCcch
Q 018671 140 -----------R--------------HYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGPST 190 (352)
Q Consensus 140 -----------~--------------~~~~~~l~~~gV~v~~~~V~~v~~~~v~~--~~g~--~i~~D~vi~a~G~~~~~ 190 (352)
. ......+++.+|+++.+...-..++++.. .+|+ ++.||.+|+|||.+|.+
T Consensus 71 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 150 (466)
T PRK06115 71 LGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP 150 (466)
T ss_pred cCccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC
Confidence 0 11122234457777766422222344443 4664 69999999999999864
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.80 E-value=0.00015 Score=71.82 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=79.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC------------------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------ 132 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------------------------------ 132 (352)
|+|+|||||++|+-.|..|.+.+ .+++++|+. ++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998866 788888875 331
Q ss_pred -CCC-----------cHHHHHHHHHHHHhCCCE--EEeC-ceEEEEC--C-------eEEEcC-Cc--EEecceEEEecC
Q 018671 133 -SSF-----------DDRLRHYATTQLSKSGVR--LVRG-IVKDVDS--Q-------KLILND-GT--EVPYGLLVWSTG 185 (352)
Q Consensus 133 -~~~-----------~~~~~~~~~~~l~~~gV~--v~~~-~V~~v~~--~-------~v~~~~-g~--~i~~D~vi~a~G 185 (352)
+.+ ..++.++++...++.++. +..+ +|.+++. + .|++.+ |+ +..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 001 156788888888888773 5677 7887753 1 355543 42 456999999999
Q ss_pred CCcchhhhh---cCCCCCCCCccccCCccccC---CCCCEEEEccccc
Q 018671 186 VGPSTLVKS---LDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSG 227 (352)
Q Consensus 186 ~~~~~~~~~---~~l~~~~~G~i~Vd~~l~~~---~~~~IfaiGD~a~ 227 (352)
.-..|.+.. .|++ .-.|.+.--..++.+ ...+|-++|-.++
T Consensus 148 ~~~~P~~P~~~~~G~e-~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLE-KFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB-----CTGG-GHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChhhhhhhh-cCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 865442221 1332 124555544444432 2467999997654
No 170
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.79 E-value=0.00024 Score=67.89 Aligned_cols=92 Identities=28% Similarity=0.408 Sum_probs=69.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--CCCCC-----C---------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS-----F--------------------- 135 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~-----~--------------------- 135 (352)
..|+|||||++|+-+|..|++.+ .+|+|+|+. .+.+. +
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~ 68 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALG 68 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhcc
Confidence 38999999999999999999876 677777664 22100 0
Q ss_pred ----------------------------------cHHHHHHHHHHHHhCC-CEEEeC-ceEEEECC----eEEEc-CCcE
Q 018671 136 ----------------------------------DDRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGTE 174 (352)
Q Consensus 136 ----------------------------------~~~~~~~~~~~l~~~g-V~v~~~-~V~~v~~~----~v~~~-~g~~ 174 (352)
...+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ ||++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~ 148 (387)
T COG0654 69 VPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET 148 (387)
T ss_pred CCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE
Confidence 1345566667776665 999998 89888754 37778 9999
Q ss_pred EecceEEEecCCCcc
Q 018671 175 VPYGLLVWSTGVGPS 189 (352)
Q Consensus 175 i~~D~vi~a~G~~~~ 189 (352)
+.||++|-|=|....
T Consensus 149 ~~a~llVgADG~~S~ 163 (387)
T COG0654 149 LDADLLVGADGANSA 163 (387)
T ss_pred EecCEEEECCCCchH
Confidence 999999999997654
No 171
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.79 E-value=6.9e-05 Score=76.54 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=65.1
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||+|++|+.+|..|++.+ .+|+++++. .+. | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 35679999999999999999999876 899999985 321 2 23556666667788899
Q ss_pred CCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
||+++.+ .|.. .+.+.+ ....+|.|++++|....
T Consensus 391 Gv~~~~~~~v~~----~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CeEEECCCEeCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999988 4421 111111 12369999999998643
No 172
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.78 E-value=9.3e-05 Score=71.69 Aligned_cols=87 Identities=14% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hHhhHHHhhcCCCCCccEEEEEeCCC-CC--------CCCc--HHHHHHHHHHHHhC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SSFD--DRLRHYATTQLSKS 150 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~-~~~~~~~~~~~~~~~~~~V~lv~~~~-~l--------~~~~--~~~~~~~~~~l~~~ 150 (352)
.++|+|||+||+|+++|..|.. .+ .+|+++++.+ .. |..+ ..+.+.+.+.+...
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 4699999999999999998753 33 8999999863 21 1111 23444455556667
Q ss_pred CCEEEeC-ceE-EEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVK-DVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~-~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++++..+ .|- .++.+.+ .-.+|.||+|+|..+.
T Consensus 105 ~v~f~gnv~VG~Dvt~eeL------~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 105 NYRFFGNVHVGVDLKMEEL------RNHYNCVIFCCGASEV 139 (506)
T ss_pred CeEEEeeeEecCccCHHHH------HhcCCEEEEEcCCCCC
Confidence 8887755 332 1211111 1269999999998864
No 173
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.77 E-value=0.00027 Score=67.95 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+++.|++++.+ ++++++.+ .|.+++|+++.+|+||.|.|....
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3445556667779999988 78887643 366788889999999999998664
No 174
>PRK06184 hypothetical protein; Provisional
Probab=97.76 E-value=0.0003 Score=69.65 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEECC--e--EEE---cCCcEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+.|++++.+ ++++++.+ . +.+ ++++++.+|.||-|.|....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4456667777889999999 88888643 3 444 45678999999999998763
No 175
>PRK05868 hypothetical protein; Validated
Probab=97.75 E-value=0.00031 Score=66.76 Aligned_cols=40 Identities=8% Similarity=0.280 Sum_probs=33.1
Q ss_pred CCCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.|++++.+ +|++++. + .|.++||+++.+|+||-|-|....
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 58999988 7888864 3 466789999999999999998765
No 176
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.75 E-value=0.00036 Score=66.54 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++.| ++++ + ++++++. + .|.+++|+++.+|.+|.|.|....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 34555656677777 9988 6 7888753 3 356678888999999999998754
No 177
>PRK08244 hypothetical protein; Provisional
Probab=97.74 E-value=0.00032 Score=69.31 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEc--CC-cEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN--DG-TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~--~g-~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++.|++++.+ ++++++. +. +.+. +| +++.+|.||.|.|....
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 34555666677789999998 7888753 33 3443 45 47999999999998764
No 178
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.74 E-value=0.00014 Score=71.64 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=58.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++|+|+|+|.+|+++|..|++.+ .+|++++..+ ......+.+.|++.||+++.+ .+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc--
Confidence 58999999999999999998876 8999998653 123344566788899999887 332
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcch
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
....+|+||.++|..|+.
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred ----------ccCCCCEEEECCCcCCCC
Confidence 124589999999999983
No 179
>PRK07846 mycothione reductase; Reviewed
Probab=97.73 E-value=0.00024 Score=69.37 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.4
Q ss_pred HHhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 147 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 147 l~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+++.||+++.++..-+++..|.+.+|+++.+|.+|+|||.+|.
T Consensus 99 ~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~ 141 (451)
T PRK07846 99 RDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPV 141 (451)
T ss_pred hhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCC
Confidence 4567899888865556788899988889999999999999986
No 180
>PRK13748 putative mercuric reductase; Provisional
Probab=97.71 E-value=0.00035 Score=70.11 Aligned_cols=92 Identities=29% Similarity=0.398 Sum_probs=64.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC---------C---------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S--------------------- 133 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~--------------------- 133 (352)
..|+|||||+.|+.+|..+++.+ .+|.||+++.+. |
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G--------------~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~ 164 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG--------------ARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDG 164 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccC
Confidence 48999999999999999999987 789999865320 0
Q ss_pred CC-------c-HHHHHH------------HHHHHHhC-CCEEEeCceEEEECCeEEE--cCCc--EEecceEEEecCCCc
Q 018671 134 SF-------D-DRLRHY------------ATTQLSKS-GVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 134 ~~-------~-~~~~~~------------~~~~l~~~-gV~v~~~~V~~v~~~~v~~--~~g~--~i~~D~vi~a~G~~~ 188 (352)
.. + ..+.+. ..+.+++. +|+++.+++..++++.+.+ .+|+ ++.+|.+|+|||.+|
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 165 GIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CccCCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 00 0 111111 11223444 8999888777777776554 4553 699999999999998
Q ss_pred c
Q 018671 189 S 189 (352)
Q Consensus 189 ~ 189 (352)
.
T Consensus 245 ~ 245 (561)
T PRK13748 245 A 245 (561)
T ss_pred C
Confidence 6
No 181
>PRK09126 hypothetical protein; Provisional
Probab=97.69 E-value=0.00046 Score=65.91 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHH-hCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 140 RHYATTQLS-KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ~~~~~~~l~-~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+. ..|++++.+ +|++++.+ .|.+++|+++.+|.||.|.|....
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 333444443 368999998 78887543 466788999999999999998765
No 182
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.68 E-value=0.00045 Score=57.15 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.6
Q ss_pred CCCEEE--eCceEEEECC----eEEEcCCcEEecceEEEecCC
Q 018671 150 SGVRLV--RGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 186 (352)
Q Consensus 150 ~gV~v~--~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 186 (352)
.+|++. ..+|++++.. .+.+++|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 366664 3378887653 477889999999999999996
No 183
>PRK06753 hypothetical protein; Provisional
Probab=97.67 E-value=0.00037 Score=66.08 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=31.0
Q ss_pred CCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+++.+ +|++++.+ .|++++|+++.+|+||-|-|....
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4568888 78888643 466788999999999999997764
No 184
>PRK07190 hypothetical protein; Provisional
Probab=97.67 E-value=0.0005 Score=67.73 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCCcEEecceEEEecCCCc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
+.+.+.+.+++.|++++.+ +|++++. +. +.+.+|+++.++.||.|.|...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4445556677889999999 8988864 33 4556788899999999999865
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=0.00056 Score=67.22 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=62.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC-------CCCCC------CCcHH-------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-------NEILS------SFDDR------------- 138 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-------~~~l~------~~~~~------------- 138 (352)
.++|||||+.|+.+|..+++.+ .+|.++++ ..+.. -.+.+
T Consensus 6 DviIIG~G~aG~~aA~~~~~~g--------------~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~ 71 (475)
T PRK06327 6 DVVVIGAGPGGYVAAIRAAQLG--------------LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAG 71 (475)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHH
Confidence 7999999999999999999877 78999986 11110 00100
Q ss_pred ------------------------------HHHHHHHHHHhCCCEEEeCceEEEE----CCeEEEc--CCcEEecceEEE
Q 018671 139 ------------------------------LRHYATTQLSKSGVRLVRGIVKDVD----SQKLILN--DGTEVPYGLLVW 182 (352)
Q Consensus 139 ------------------------------~~~~~~~~l~~~gV~v~~~~V~~v~----~~~v~~~--~g~~i~~D~vi~ 182 (352)
+.+...+.++..+|+++.+++..++ +..|.+. +++++.+|.+|+
T Consensus 72 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lVi 151 (475)
T PRK06327 72 HHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVII 151 (475)
T ss_pred hhHHhcCccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEE
Confidence 0011223344568888877665555 4466664 346899999999
Q ss_pred ecCCCcc
Q 018671 183 STGVGPS 189 (352)
Q Consensus 183 a~G~~~~ 189 (352)
|||.+|.
T Consensus 152 ATGs~p~ 158 (475)
T PRK06327 152 ATGSEPR 158 (475)
T ss_pred eCCCCCC
Confidence 9999986
No 186
>PRK09897 hypothetical protein; Provisional
Probab=97.66 E-value=0.00048 Score=68.22 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=29.8
Q ss_pred HhCC--CEEEeC-ceEEEECC--e--EEEcC-CcEEecceEEEecCCCcc
Q 018671 148 SKSG--VRLVRG-IVKDVDSQ--K--LILND-GTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 148 ~~~g--V~v~~~-~V~~v~~~--~--v~~~~-g~~i~~D~vi~a~G~~~~ 189 (352)
.+.| +.++.+ +|++++.+ . |.+.+ |..+.+|.||+|+|..++
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 3455 677777 78888643 3 44444 467999999999998654
No 187
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.65 E-value=0.00041 Score=66.04 Aligned_cols=92 Identities=20% Similarity=0.375 Sum_probs=64.3
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-C----------CC------------------
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-S----------SF------------------ 135 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-~----------~~------------------ 135 (352)
|+|||||++|+.+|..|.+.. .+.+|.+||+. +.. + ..
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999993322 23788888765 220 1 00
Q ss_pred ----------------cHHHHHHHHHHHHhCCCEEEeCceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 136 ----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 136 ----------------~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
...+.+.+.+.+...++.++..+|.+|+.+ .+++++|+++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 123445555666655665555589888775 357889999999999999996654
No 188
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.65 E-value=0.00041 Score=64.74 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEc---CC--cEEecceEEEecCCCcc
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN---DG--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~---~g--~~i~~D~vi~a~G~~~~ 189 (352)
..+.+.+.+.+++.|++++.+ ++.+++. ++ +.+. +| +++.+|+||-|-|....
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 356666777778889999998 7776643 33 2332 34 36899999999998875
No 189
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.65 E-value=0.00065 Score=64.53 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+.+ ++++.+ +|++++. + .+.+++|+++.+|.||.|.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 34455666666777 999988 7888864 3 356688989999999999998654
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.64 E-value=0.00034 Score=68.60 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||||+.|+..|..+++.+ .+|+|++++
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G--------------~~V~lie~~ 36 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLG--------------LKTAVVEKK 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecC
Confidence 7999999999999999999877 899999975
No 191
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.63 E-value=0.00086 Score=64.20 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHhCCCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcchhhhhcCC
Q 018671 143 ATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 197 (352)
Q Consensus 143 ~~~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l 197 (352)
+.+.+++.|++++.+ +|.+++. + .|.+++| ++.+|.||+|+|.....+.+.+++
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~ 213 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL 213 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence 334445678999888 7888754 2 3445555 799999999999987666655554
No 192
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00036 Score=59.84 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=71.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHh-hHHHhhc--CCCCCccEEEEEeCCCCCCCC-----cHHHHHHHHHHHHhCCCEEEe
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIM-RDVRQRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 156 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~-~~~~~~~--~~~~~~~~V~lv~~~~~l~~~-----~~~~~~~~~~~l~~~gV~v~~ 156 (352)
+|+|||+||.+...|..+++.-- ..+..-+ ..+.++-+.+-.+.-+-+|.| ++++.+.++++-.+.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 89999999999999998876431 1111000 112222333322221223333 578888899999999999999
Q ss_pred CceEEEECCe---EEEcCCcEEecceEEEecCCCcch
Q 018671 157 GIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 157 ~~V~~v~~~~---v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
..|.+++-.. ..++|.+.+.+|.||++||..+..
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEecccceee
Confidence 9888877652 334577789999999999998764
No 193
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.63 E-value=0.00066 Score=65.91 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=32.0
Q ss_pred cEEecceEEEecCCCcchhhhhcCCCCCCCCccccCCcccc-CCCCCEEEEccccc
Q 018671 173 TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV-PSVQDVFAVGDCSG 227 (352)
Q Consensus 173 ~~i~~D~vi~a~G~~~~~~~~~~~l~~~~~G~i~Vd~~l~~-~~~~~IfaiGD~a~ 227 (352)
++++||+|+-++|++..++. +++.|.+ +.+.. -++ .+.|++|+.|=+..
T Consensus 366 ~~~~~~lV~rsiGY~g~p~~---g~pFd~~--~~n~~-grv~~~~~g~Y~~GWiKr 415 (506)
T PTZ00188 366 KVLVTPLVIFATGFKKSNFA---ENLYNQS--VQMFK-EDIGQHKFAIFKAGWFDK 415 (506)
T ss_pred EEEEcCEEEEcccccCCCCC---CCCcccc--CCCCC-CcccCCCCCcEEeeecCc
Confidence 36999999999999988643 2344422 33322 111 13699999997765
No 194
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.63 E-value=0.00066 Score=65.26 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHhC-CCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 141 HYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 141 ~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+. +|+++.+ +|++++.+ .|.+++|+++.+|+||-|-|....
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 3444444443 7999888 78888542 467789999999999999997653
No 195
>PRK07045 putative monooxygenase; Reviewed
Probab=97.62 E-value=0.00069 Score=64.69 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEECC------eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSK-SGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~~------~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+ .|++++.+ +|++++.+ .|.+++|+++.+|+||-|.|....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 344445555543 47999988 78887642 367788999999999999998764
No 196
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.62 E-value=0.00073 Score=65.49 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEE--CCeE--EEcCCcEEecceEEEecCCCc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~v--~~~~g~~i~~D~vi~a~G~~~ 188 (352)
+.+.+.+..++.|++++.+ +|+++. ++.+ ...+|+++.+|.||.|+|...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 3444556667789999998 788874 3343 235677899999999999753
No 197
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.62 E-value=0.00071 Score=65.15 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEECC----eEEEcC-C--cEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILND-G--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~-g--~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+. +|+++.+ ++++++.+ .|.+++ + .++.+|+||.|.|....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 344444555554 7999888 78888543 355553 3 36999999999998764
No 198
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.60 E-value=2.5e-05 Score=67.17 Aligned_cols=58 Identities=40% Similarity=0.366 Sum_probs=45.6
Q ss_pred cCCCeeEeeCCEEEEcCCCCCCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEEC
Q 018671 15 LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 90 (352)
Q Consensus 15 ~~~~~~~i~yD~LViAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG 90 (352)
.++++.++.||+||||||+.|+.|++||. +.....+++.++..+.+.+. ..++|+|||
T Consensus 102 ~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~VvG 159 (201)
T PF07992_consen 102 ETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLE-----------------SPKRVAVVG 159 (201)
T ss_dssp ETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSS-----------------TTSEEEEES
T ss_pred ccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccc-----------------ccccccccc
Confidence 35678899999999999999999999997 45566677888877765531 123999999
No 199
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.60 E-value=0.00082 Score=64.22 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~-gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++. |++++.+ +|++++. + .|.+++|+++.+|.||.|.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 3445555666666 9999988 7888754 2 356678889999999999998775
No 200
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.59 E-value=0.0006 Score=64.84 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=75.9
Q ss_pred CCEEEEcCCCC----------CCCCCCCCccccCcCCCCHHHHHHHHHHHHHHHhhccCCC-CCHHHhccCCcEEEECCC
Q 018671 24 YDKLVIALGAE----------ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPG-ISEEEKSRLLHCVVVGGG 92 (352)
Q Consensus 24 yD~LViAtGs~----------~~~~~ipG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvVvGgG 92 (352)
-|.+|||.=|- |....+.+++|++.+.+..+..++-.+.+......+..-. ..+-...-.++++|||||
T Consensus 54 ldrvVvaACsPr~he~~Frln~y~~E~aniREqcswvH~~dAtekA~dllr~avakar~le~le~~~~~v~~svLVIGGG 133 (622)
T COG1148 54 LDRVVVAACSPRLHEPTFRLNPYYLEIANIREQCSWVHMDDATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGG 133 (622)
T ss_pred hhheEEEecCCcccCCceeeCHHHhhhhhHhhcceeeccchHHHHHHHHHHHHHHHHhhcCChhhHHHhhccceEEEcCc
Confidence 68889987642 1122345566776666554422222333332333333221 111122345799999999
Q ss_pred hHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CCCC-------CcHH------HHHHHHHHHHhCCCEEEeC-
Q 018671 93 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-------FDDR------LRHYATTQLSKSGVRLVRG- 157 (352)
Q Consensus 93 ~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~-------~~~~------~~~~~~~~l~~~gV~v~~~- 157 (352)
.+|++.|.+|++.+ .+|+|++..+ +... |+.. +...+.+.-..-+|++++.
T Consensus 134 vAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tya 199 (622)
T COG1148 134 VAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYA 199 (622)
T ss_pred HHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeee
Confidence 99999999999998 9999999873 3221 1111 1222223333457999988
Q ss_pred ceEEEECC
Q 018671 158 IVKDVDSQ 165 (352)
Q Consensus 158 ~V~~v~~~ 165 (352)
+|++|++.
T Consensus 200 eV~ev~G~ 207 (622)
T COG1148 200 EVEEVSGS 207 (622)
T ss_pred eeeeeccc
Confidence 89998875
No 201
>PRK08013 oxidoreductase; Provisional
Probab=97.59 E-value=0.00087 Score=64.34 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+. +|+++.+ +|++++.+ .+.+++|+++.+|+||-|-|....
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 344455555554 7999988 78888543 356778999999999999998764
No 202
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.0023 Score=61.24 Aligned_cols=84 Identities=17% Similarity=-0.007 Sum_probs=52.4
Q ss_pred cccCCCeeEeeCCEEEEcCCCCCCCCCC-----CCccccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEE
Q 018671 13 RTLEPWKFKISYDKLVIALGAEASTFGI-----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 87 (352)
Q Consensus 13 ~~~~~~~~~i~yD~LViAtGs~~~~~~i-----pG~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 87 (352)
.+...++....+|-+|+|||..+..++. +|...+.-..+.. ++ .......-+|+
T Consensus 142 ~~~~~~g~~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~-~~--------------------ld~v~~~drVl 200 (474)
T COG4529 142 LVTTADGPSEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPA-NA--------------------LDGVDADDRVL 200 (474)
T ss_pred EEecCCCCeeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCC-cc--------------------cccccCCCceE
Confidence 4456677788999999999977554433 2211111111111 00 01122234799
Q ss_pred EECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 88 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 88 VvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
|+|+|.+-++....+.+.+. ..+||++.+.
T Consensus 201 i~GsgLt~~D~v~~l~~~gh------------~g~It~iSRr 230 (474)
T COG4529 201 IVGSGLTSIDQVLVLRRRGH------------KGPITAISRR 230 (474)
T ss_pred EecCCchhHHHHHHHhccCC------------ccceEEEecc
Confidence 99999999999999988653 2688888774
No 203
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.56 E-value=0.00075 Score=66.72 Aligned_cols=91 Identities=23% Similarity=0.375 Sum_probs=61.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC---------C---------CCC------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---------I---------LSS------------ 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~---------~---------l~~------------ 134 (352)
.|+|||||+.|+.+|..+++.+ .+|.||+..+ + .|.
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G--------------~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~ 72 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHG--------------KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSI 72 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHH
Confidence 7999999999999999999987 8999999410 1 010
Q ss_pred -------C--------c-HHHHHHHHH-----------HHHhCCCEEEeCceEEEECCeEEEcC---CcEEecceEEEec
Q 018671 135 -------F--------D-DRLRHYATT-----------QLSKSGVRLVRGIVKDVDSQKLILND---GTEVPYGLLVWST 184 (352)
Q Consensus 135 -------~--------~-~~~~~~~~~-----------~l~~~gV~v~~~~V~~v~~~~v~~~~---g~~i~~D~vi~a~ 184 (352)
+ + .++.+...+ .++..+|+++.++..-.++..|.+.+ ++++.+|.+|+||
T Consensus 73 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIAT 152 (499)
T PTZ00052 73 FHHDSQMYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIAT 152 (499)
T ss_pred HHhHHhcCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEec
Confidence 0 0 111112222 12335777777654445566676643 3579999999999
Q ss_pred CCCcc
Q 018671 185 GVGPS 189 (352)
Q Consensus 185 G~~~~ 189 (352)
|.+|.
T Consensus 153 Gs~p~ 157 (499)
T PTZ00052 153 GGRPS 157 (499)
T ss_pred CCCCC
Confidence 99986
No 204
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.55 E-value=0.0011 Score=63.41 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEcCCcE-EecceEEEecCCCcchhhhhcCCCCC
Q 018671 140 RHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 200 (352)
Q Consensus 140 ~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~-i~~D~vi~a~G~~~~~~~~~~~l~~~ 200 (352)
...+.+.+.++|++++.+ +|+.++. + .+.+.+|++ ++|+.||.|+|..+.++++..+++.+
T Consensus 156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 156 TRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 344445556789999999 8988764 3 344567766 99999999999999988888877653
No 205
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.55 E-value=0.00054 Score=73.13 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC----------C-cHHHHHHHHHHHHhC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS----------F-DDRLRHYATTQLSKS 150 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~----------~-~~~~~~~~~~~l~~~ 150 (352)
...|+|||||++|+..|.++++.+ .+|+|++.. .+... . ..+....+.+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 468999999999999999998876 899999875 32211 1 123434555666666
Q ss_pred -CCEEEeC-ceEEEECCe-EEE----c-------CC------cEEecceEEEecCCCcch
Q 018671 151 -GVRLVRG-IVKDVDSQK-LIL----N-------DG------TEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 151 -gV~v~~~-~V~~v~~~~-v~~----~-------~g------~~i~~D~vi~a~G~~~~~ 190 (352)
+|+++.+ +|..+..+. +.. . ++ .++.+|.||+|||..+.+
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 5999987 787775531 110 0 11 168999999999998764
No 206
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.53 E-value=0.0012 Score=63.29 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEECC--e--EEE---cCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+ .+++++.+ +|++++.+ . +++ .+++++.+|+||-|-|....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 344455555554 37999988 78888653 3 444 33457999999999998764
No 207
>PRK13984 putative oxidoreductase; Provisional
Probab=97.52 E-value=0.00028 Score=71.52 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=64.8
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 150 (352)
...++|+|||+|++|+.+|..|++.+ .+|+++++.... | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45678999999999999999999876 899999875321 1 23455656666788999
Q ss_pred CCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCc
Q 018671 151 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 151 gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
||+++.+ .|.. .+.+++ ....+|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~----~~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC----cCCHHH-HHhcCCEEEEEcCcCC
Confidence 9999988 4521 111111 2357999999999864
No 208
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.51 E-value=0.00027 Score=70.99 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=63.7
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC-------C--CCcHHHHHHHHHHHHhC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKS 150 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-------~--~~~~~~~~~~~~~l~~~ 150 (352)
+.+++|+|||+|++|+.+|..|++.+ .+|++++..+ +. | .++.+..+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999998876 7899999752 21 1 23455666666678889
Q ss_pred CCEEEeC-ce-EEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V-~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|++++.+ .+ .++..+.+ ...+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~~------~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQL------EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHHH------HhhCCEEEEeeCCCCC
Confidence 9998887 44 23221111 1248999999998754
No 209
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.50 E-value=0.001 Score=66.24 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=35.6
Q ss_pred HHHHHHHHhC-CCEEEeCceEEEE---CC---eEEEcCCcEEecceEEEecCCCc
Q 018671 141 HYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 141 ~~~~~~l~~~-gV~v~~~~V~~v~---~~---~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
..+.+.+++. +++++.+.+.++. .+ +|.+.+|.++.||.||+|+|.-.
T Consensus 100 ~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455556666 7888877666653 22 47788898999999999999884
No 210
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.50 E-value=0.00024 Score=73.81 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.6
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..+++|+|||+||+|+++|..|+..+ .+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 46789999999999999999999876 899999974
No 211
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.50 E-value=0.0029 Score=60.50 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred EEEeCCCCCCC-CcHHHHHHHHHHHHhCCCEEEeC-ceEEEE--CCe---EEEcCC--cEEecceEEEecCCC-cchhhh
Q 018671 124 TLIEANEILSS-FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDG--TEVPYGLLVWSTGVG-PSTLVK 193 (352)
Q Consensus 124 ~lv~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~~~~g--~~i~~D~vi~a~G~~-~~~~~~ 193 (352)
.+++-..+.|+ .+..+.+.+.+.++++|++++.+ +|.+++ ++. +...++ .++.+|.+|+|+|.- ...+.+
T Consensus 249 ~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 249 TLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred CEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHh
Confidence 34443333333 35688888999999999999988 888865 332 334554 479999999999998 655555
Q ss_pred hcC--------CCC----CCCC---------------ccccCCcccc----CCCCCEEEEccccccccCCCCcCCCCchH
Q 018671 194 SLD--------LPK----SPGG---------------RIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALAQ 242 (352)
Q Consensus 194 ~~~--------l~~----~~~G---------------~i~Vd~~l~~----~~~~~IfaiGD~a~~~~~~~~~~~~~~~~ 242 (352)
.++ +++ +... .|.+|+.||. +-++|+||+|-+..-.++.-. -.-.-
T Consensus 329 ~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---gcG~G 405 (419)
T TIGR03378 329 EFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---GCGSG 405 (419)
T ss_pred hcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---CCCch
Confidence 442 222 1111 2778888883 138999999998865443110 11123
Q ss_pred HHHHHHHHHHHHH
Q 018671 243 VAERQGKYLFSLL 255 (352)
Q Consensus 243 ~A~~qg~~~a~~i 255 (352)
+|+..|-++|++|
T Consensus 406 Vai~Ta~~aa~~i 418 (419)
T TIGR03378 406 VAVSTALHAAEQI 418 (419)
T ss_pred hHHHHHHHHHHhh
Confidence 7888888888876
No 212
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.49 E-value=0.00015 Score=63.50 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=62.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCE----------E
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR----------L 154 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~----------v 154 (352)
+++|||||.+|+.+|..|+.+. +..+|.|++.+.+.... .--..+-+.|++..|+ +
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccH
Confidence 3689999999999999999875 33799999887544221 1122333444444443 1
Q ss_pred E--eCceEEEE--CCeEEEcCCcEEecceEEEecCCCcch
Q 018671 155 V--RGIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 155 ~--~~~V~~v~--~~~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
. .+.|..++ +..+++.+|+++.|+.+.+|+|.+|.-
T Consensus 67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcce
Confidence 1 01233333 346889999999999999999999974
No 213
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.48 E-value=0.0015 Score=62.28 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+. ++. +.+ +|.+++. + .|++++|+++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 444555556665 465 556 7888753 3 356678889999999999998764
No 214
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.47 E-value=0.0016 Score=61.61 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHHhC-CCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcchhh
Q 018671 141 HYATTQLSKS-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 192 (352)
Q Consensus 141 ~~~~~~l~~~-gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~~~~ 192 (352)
..+.+.+.+. |++++.+ +|.+++.+.|.+.+|+ +.+|.||+|+|.....++
T Consensus 149 ~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 149 PALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhC
Confidence 3444455554 9999988 7999987778777774 789999999998765543
No 215
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.47 E-value=0.0011 Score=65.28 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C-------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S------------- 133 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---------~~l---------~------------- 133 (352)
.++|||+|+.|..+|..+++.+ .+|.+|+.. .+. |
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G--------------~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~ 69 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYG--------------AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQA 69 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHH
Confidence 7999999999999999999987 789999841 010 0
Q ss_pred -----C--C--cH------------------HHHHHHHHHHHhCCCEEEeCceEEEECCeEEEc--CC--cEEecceEEE
Q 018671 134 -----S--F--DD------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVW 182 (352)
Q Consensus 134 -----~--~--~~------------------~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~D~vi~ 182 (352)
. + .. .+.+.....++..||+++.+.-.-++++.|.+. +| +++.+|.+|+
T Consensus 70 ~~~~~~~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVI 149 (484)
T TIGR01438 70 LKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLI 149 (484)
T ss_pred HhhhhhcCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEE
Confidence 0 0 00 011223345677899998885555567777664 33 3699999999
Q ss_pred ecCCCcc
Q 018671 183 STGVGPS 189 (352)
Q Consensus 183 a~G~~~~ 189 (352)
|||.+|.
T Consensus 150 ATGs~p~ 156 (484)
T TIGR01438 150 ATGERPR 156 (484)
T ss_pred ecCCCCC
Confidence 9999986
No 216
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.46 E-value=0.00077 Score=64.32 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=32.5
Q ss_pred CCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+++++.+ +|++++. + .+++++|+++.+|+||.|.|....
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 6888888 7888754 3 577789999999999999998775
No 217
>PRK06996 hypothetical protein; Provisional
Probab=97.46 E-value=0.0021 Score=61.68 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCC---cEEecceEEEecCCCc
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG---TEVPYGLLVWSTGVGP 188 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g---~~i~~D~vi~a~G~~~ 188 (352)
..+.+.+.+.+.+.+++++.+ ++++++. +. +.+.++ +++.+|+||-|-|...
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~ 174 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLF 174 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCc
Confidence 456777888888889999988 7888754 33 445544 5899999999999643
No 218
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.46 E-value=0.0011 Score=63.79 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEECC----eEEEcCCcEEecceEEEecCCCc
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~----~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
..+.+.+.+.+++.|++++.+ +|++++.+ .+.+ +++++.+|.||+|+|...
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 445566667777889999988 78887643 2333 566899999999999754
No 219
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.44 E-value=0.0014 Score=64.59 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=61.9
Q ss_pred cEEEECCChHHHHHHHHHHHh-HhhHHHhhcCCCCCccEEEEEeCC---------CCC---------C------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN---------EIL---------S------------ 133 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~---------~~l---------~------------ 133 (352)
.++|||||+.|..+|..+++. + .+|.||++. .+. |
T Consensus 5 DviVIG~G~~G~~aA~~aa~~~g--------------~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~ 70 (486)
T TIGR01423 5 DLVVIGAGSGGLEAGWNAATLYK--------------KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMD 70 (486)
T ss_pred CEEEECCChHHHHHHHHHHHhcC--------------CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHH
Confidence 799999999999999999986 6 799999952 120 1
Q ss_pred ------CC-----------c------------HHHHHHHHHHHHh-CCCEEEeCceEEEECCeEEEcC--------CcEE
Q 018671 134 ------SF-----------D------------DRLRHYATTQLSK-SGVRLVRGIVKDVDSQKLILND--------GTEV 175 (352)
Q Consensus 134 ------~~-----------~------------~~~~~~~~~~l~~-~gV~v~~~~V~~v~~~~v~~~~--------g~~i 175 (352)
.+ + ..+.+...+.|++ .||+++.++-.-++++.|...+ .+++
T Consensus 71 ~~~~~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~ 150 (486)
T TIGR01423 71 TLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERL 150 (486)
T ss_pred HHHHhhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEE
Confidence 00 0 0111222233555 4899988854444566666531 2479
Q ss_pred ecceEEEecCCCcc
Q 018671 176 PYGLLVWSTGVGPS 189 (352)
Q Consensus 176 ~~D~vi~a~G~~~~ 189 (352)
.+|.+|+|||.+|.
T Consensus 151 ~~d~lIIATGs~p~ 164 (486)
T TIGR01423 151 QAEHILLATGSWPQ 164 (486)
T ss_pred ECCEEEEecCCCCC
Confidence 99999999999986
No 220
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.44 E-value=0.0007 Score=63.47 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=68.2
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC-CC--CCC---------cHHHHHHHHHHHHh
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--SSF---------DDRLRHYATTQLSK 149 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l--~~~---------~~~~~~~~~~~l~~ 149 (352)
+.++|||+|+|..|+.++..|.... .+|++|.+.. ++ |.+ -..+.+.+....++
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~--------------YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~ 119 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSL--------------YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK 119 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccc--------------cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc
Confidence 4569999999999999988886544 8999999863 21 333 24556666666665
Q ss_pred C--CCEEEeCceEEEECC--eEEE----cCC----cEEecceEEEecCCCcchh
Q 018671 150 S--GVRLVRGIVKDVDSQ--KLIL----NDG----TEVPYGLLVWSTGVGPSTL 191 (352)
Q Consensus 150 ~--gV~v~~~~V~~v~~~--~v~~----~~g----~~i~~D~vi~a~G~~~~~~ 191 (352)
. +++++..+-..++++ .|.. +++ -.+.||.+|+|+|..+++|
T Consensus 120 k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 120 KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 5 566676666666664 3433 344 3689999999999999854
No 221
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.43 E-value=0.0012 Score=63.16 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEC--C--eEEEcC------C--cEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSGVRLVRGIVKDVDS--Q--KLILND------G--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~~V~~v~~--~--~v~~~~------g--~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+...+.|++++.++++++.. + .+.+.+ | .++.+|.||-|.|....
T Consensus 94 fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 33445555667899997667777653 2 244443 2 37999999999997653
No 222
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.43 E-value=0.0016 Score=62.01 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+.+ ++++.+ +++++.. + .+.++++ ++.+|+||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 44555566666664 888877 7887743 2 4566666 8999999999998765
No 223
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.43 E-value=0.0021 Score=61.45 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=35.9
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 141 HYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 141 ~~~~~~l~~-~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+ .|++++.+ +|+++.. + .|.+++|+++.+|.||.|.|....
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 344444544 47999888 7888754 3 356678888999999999998764
No 224
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.42 E-value=0.0016 Score=65.05 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEECC--e--EEEc--CC--cEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKS-GVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+. |++++.+ +|++++.+ + ++++ +| +++.+|.||-|.|....
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 3445555666664 8999998 89888643 3 4454 56 47999999999998764
No 225
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.41 E-value=0.0019 Score=61.49 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+ .|++++.+ +|++++. + .+.+++|+++.+|.||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 455556666666 49999988 8888854 3 366678888999999999997653
No 226
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.40 E-value=0.0029 Score=61.22 Aligned_cols=91 Identities=24% Similarity=0.265 Sum_probs=62.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC------------------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------------------ 132 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------------------------------ 132 (352)
++|+|||+|++|+-.|.+|.+.+ .+++++|+. .+.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 59999999999999999998876 666666654 221
Q ss_pred -CCC-----------c-HHHHHHHHHHHHhCCCE--EEeC-ceEEEECC-----eEEEcCC----cEEecceEEEecCCC
Q 018671 133 -SSF-----------D-DRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ-----KLILNDG----TEVPYGLLVWSTGVG 187 (352)
Q Consensus 133 -~~~-----------~-~~~~~~~~~~l~~~gV~--v~~~-~V~~v~~~-----~v~~~~g----~~i~~D~vi~a~G~~ 187 (352)
+.+ + .++.+++....++.++. +..+ +|..++.. .|...++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 000 1 25677777877887763 4444 45555432 3555443 367799999999998
Q ss_pred c
Q 018671 188 P 188 (352)
Q Consensus 188 ~ 188 (352)
.
T Consensus 153 ~ 153 (448)
T KOG1399|consen 153 V 153 (448)
T ss_pred C
Confidence 4
No 227
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.40 E-value=0.00047 Score=66.10 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+|+|..|++.+ .+|+|++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999987 899999964
No 228
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.00035 Score=67.49 Aligned_cols=89 Identities=25% Similarity=0.381 Sum_probs=60.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C-C--C---CCC----------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-I--L---SSF---------------------- 135 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~--l---~~~---------------------- 135 (352)
.|+|||||.+|+|.|.+.++++ .++.|++.+ + + + |..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG--------------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~ 71 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMG--------------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKA 71 (621)
T ss_pred ceEEECCCccchHHHHhhhccC--------------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHh
Confidence 7999999999999999999988 666666554 2 1 1 100
Q ss_pred ---------------cH------------HHHHHHHHHHHh-CCCEEEeCceEEEEC------CeEEEcCCcEEecceEE
Q 018671 136 ---------------DD------------RLRHYATTQLSK-SGVRLVRGIVKDVDS------QKLILNDGTEVPYGLLV 181 (352)
Q Consensus 136 ---------------~~------------~~~~~~~~~l~~-~gV~v~~~~V~~v~~------~~v~~~~g~~i~~D~vi 181 (352)
+| ..++.+++.++. .++.+..+.|.++.- .+|.+.+|..+.|+.||
T Consensus 72 ~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 72 ADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred hhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence 01 112333334443 377777775555422 25788999999999999
Q ss_pred EecCCC
Q 018671 182 WSTGVG 187 (352)
Q Consensus 182 ~a~G~~ 187 (352)
++||.-
T Consensus 152 lTTGTF 157 (621)
T COG0445 152 LTTGTF 157 (621)
T ss_pred Eeeccc
Confidence 999974
No 229
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.40 E-value=7.1e-05 Score=67.38 Aligned_cols=96 Identities=21% Similarity=0.419 Sum_probs=63.9
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC--CCCC---cHHHHHHH-----HHHHHhC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI--LSSF---DDRLRHYA-----TTQLSKS 150 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~--l~~~---~~~~~~~~-----~~~l~~~ 150 (352)
+.-.|+|||||..|+.+|..+.+... .-+|-++|+. +. -|.+ +..+...- ...|--.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~ 105 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK 105 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC
Confidence 34589999999999999999977552 2688899885 32 2322 11111110 0111122
Q ss_pred CCEEEeCceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|.+++..+|++.+++ .|.+.+|++|.+|.+|+|+|..-+
T Consensus 106 ~a~wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 106 GATWIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred CcHHHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec
Confidence 344444467777764 799999999999999999998876
No 230
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.39 E-value=0.0016 Score=63.46 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEE--CC----eEEEcCCcEEecceEEEecCCCcc
Q 018671 140 RHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ~~~~~~~l~~~gV~v~~~~V~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+...++||+++.++|.++. ++ .|.+++|+++.+|.+|=|+|.+..
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 344555556789999988766553 33 477889999999999999998664
No 231
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.36 E-value=0.0015 Score=63.24 Aligned_cols=91 Identities=23% Similarity=0.362 Sum_probs=65.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC------Cc---------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FD--------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~------~~--------------------- 136 (352)
.++|||+|+.|...|..+++++ .+|.++++. .+... .|
T Consensus 6 DvvVIG~GpaG~~aA~raa~~G--------------~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~ 71 (454)
T COG1249 6 DVVVIGAGPAGYVAAIRAAQLG--------------LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEY 71 (454)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccccc
Confidence 7999999999999999999987 448888887 44110 00
Q ss_pred ----------------------HHHHHHHHHHHHhCCCEEEeCceEEEECCeEEEcC--CcEEecceEEEecCCCcc
Q 018671 137 ----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILND--GTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 137 ----------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~~--g~~i~~D~vi~a~G~~~~ 189 (352)
..........+++.||+++.+.-.=++++.|...+ .+++.++.+|+|||.+|.
T Consensus 72 Gi~~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 72 GISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPR 148 (454)
T ss_pred ceecCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCc
Confidence 00111223345566999988854444577777766 478999999999999997
No 232
>PRK06185 hypothetical protein; Provisional
Probab=97.33 E-value=0.0035 Score=60.24 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEEC--Ce---EEE--cCCc-EEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~-gV~v~~~-~V~~v~~--~~---v~~--~~g~-~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+.+. |++++.+ +++++.. +. |.+ ++|+ ++.+|.||.|.|....
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 3445555555554 8999988 7888753 33 333 3564 7999999999998764
No 233
>PRK10015 oxidoreductase; Provisional
Probab=97.32 E-value=0.0026 Score=61.69 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEEC--CeEE--EcCCcEEecceEEEecCCCc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v~--~~~g~~i~~D~vi~a~G~~~ 188 (352)
+.+.+.+..++.|++++.+ +|+++.. +.+. ..++.++.+|.||.|.|...
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 3344566677789999988 7888653 3433 24556799999999999754
No 234
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.31 E-value=0.0036 Score=59.41 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEECC--e--EEEcCCcEEecceEEEecCCCcchhhhhcC
Q 018671 141 HYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 196 (352)
Q Consensus 141 ~~~~~~l~~~gV~v~~~-~V~~v~~~--~--v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~ 196 (352)
+.+.+.+++.|++++.+ +|.+++.+ . |.++++ ++.+|.||+|+|.....+...++
T Consensus 149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g 208 (380)
T TIGR01377 149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLG 208 (380)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence 33444455678898888 78888653 2 444454 79999999999986655555444
No 235
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.28 E-value=0.002 Score=62.07 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 151 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 151 gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
++.++.+ +|++++. + .+.+++|+++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4556677 7888864 2 467789999999999999998764
No 236
>PRK14727 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.003 Score=62.21 Aligned_cols=92 Identities=24% Similarity=0.357 Sum_probs=61.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC---------C--------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL---------S-------------------- 133 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l---------~-------------------- 133 (352)
..++|||+|+.|+.+|..+++.+ .+|+++++. .+. |
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g--------------~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~ 82 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHG--------------ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFD 82 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcccc
Confidence 38999999999999999999877 788899864 210 0
Q ss_pred -------CCcHH-HH-------HH-----HHHHHHhC-CCEEEeCceEEEECCeEEE--cCCc--EEecceEEEecCCCc
Q 018671 134 -------SFDDR-LR-------HY-----ATTQLSKS-GVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 134 -------~~~~~-~~-------~~-----~~~~l~~~-gV~v~~~~V~~v~~~~v~~--~~g~--~i~~D~vi~a~G~~~ 188 (352)
.++.. +. .. ..+.++.. +|+++.+...-++++.+.+ .+|+ ++.+|.+|+|||.+|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 162 (479)
T PRK14727 83 GVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTP 162 (479)
T ss_pred CcccCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCC
Confidence 01100 00 00 12223333 7888887655555565444 5663 699999999999988
Q ss_pred c
Q 018671 189 S 189 (352)
Q Consensus 189 ~ 189 (352)
.
T Consensus 163 ~ 163 (479)
T PRK14727 163 T 163 (479)
T ss_pred C
Confidence 6
No 237
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.26 E-value=0.0033 Score=62.97 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEECC--eE--EE--cCCc-EEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--KL--IL--NDGT-EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~-gV~v~~~-~V~~v~~~--~v--~~--~~g~-~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+. +++++.+ ++++++.+ .+ .+ .+|+ ++.+|.||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 445555666665 7999988 78888643 33 33 2454 6999999999998765
No 238
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.26 E-value=0.0043 Score=58.83 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred HHHHhCCCEEEeC-ceEEEEC--C--eEEEcCCcEEecceEEEecCCCcchhhhh
Q 018671 145 TQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKS 194 (352)
Q Consensus 145 ~~l~~~gV~v~~~-~V~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~~~~~~~~ 194 (352)
+.+.+.|++++.+ +|+++.. + .|.+++| ++.+|.||+|+|.....++..
T Consensus 157 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~ 210 (376)
T PRK11259 157 RLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPP 210 (376)
T ss_pred HHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhccc
Confidence 3445678888877 6877754 2 2455556 799999999999876655443
No 239
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.25 E-value=0.00053 Score=66.52 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=67.7
Q ss_pred hccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-------C--CCcHHHHHHHHHHHHh
Q 018671 80 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-------S--SFDDRLRHYATTQLSK 149 (352)
Q Consensus 80 ~~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-------~--~~~~~~~~~~~~~l~~ 149 (352)
...+++|+|||+||.|+.+|..|++.+ +.||++++. ... | .++.++.+...+.|++
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~ 185 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLER 185 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHH
Confidence 344589999999999999999999987 899999885 221 2 2466888899999999
Q ss_pred CCCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.||+++.+ ++-. .+++++ -.-++|.+++++|..-.
T Consensus 186 ~Gv~~~~~~~vG~----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 186 SGVEFKLNVRVGR----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred cCeEEEEcceECC----cCCHHH-HHHhhCEEEEeccccCC
Confidence 99999988 5421 122211 11246999999997644
No 240
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.25 E-value=0.0019 Score=64.52 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=72.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC------C-C-CCCc-----HHHHHHHHHHHHhCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE------I-L-SSFD-----DRLRHYATTQLSKSG 151 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~------~-l-~~~~-----~~~~~~~~~~l~~~g 151 (352)
+++|||.|..|.-+..++.+... ....||++...+ + + +-++ +++.-.-.++.+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 89999999999999999988442 237888885531 1 1 1111 233344457788999
Q ss_pred CEEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcc
Q 018671 152 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 152 V~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
|+++.+ +|..++.+ .|+.++|.++.+|-+|+|||..|.
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 999999 89999876 577788999999999999999997
No 241
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.23 E-value=0.0038 Score=59.89 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred cEEEECCChHHHHHHHHHHHhH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
+|+||||||+|+.+|..|++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G 23 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG 23 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC
Confidence 7999999999999999999865
No 242
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0011 Score=60.60 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=74.1
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhH--HHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRD--VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG 157 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~--~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~ 157 (352)
+..-.|+||||||.|...|.+.++.+-+. ...+|+.-- .+..=|+.- .....-++++...+++..+++.|++...
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQv--ldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQV--LDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCee--ccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 45568999999999999999888765321 122222110 010111111 1223457899999999999999999876
Q ss_pred -ceEEEEC----C---eEEEcCCcEEecceEEEecCCCcc
Q 018671 158 -IVKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 158 -~V~~v~~----~---~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+++ + .|.+++|..+++.++|++||.+=.
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR 326 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR 326 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence 6666655 2 688999999999999999998754
No 243
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.21 E-value=0.004 Score=60.54 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCC---CEEEeC-ceEEEEC---------C--eEEEcCCcEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSG---VRLVRG-IVKDVDS---------Q--KLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~g---V~v~~~-~V~~v~~---------~--~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+.+ |+++.+ +|.+++. + .|.+.+|+++.+|+||-|-|....
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4455566666664 999988 8888852 2 467789999999999999998765
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.20 E-value=0.0022 Score=62.63 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 150 SGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 150 ~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.||+++.+...-.+...|.+.+|+++.+|.+|+|||.+|.
T Consensus 105 ~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 105 PNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPY 144 (452)
T ss_pred CCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCC
Confidence 6888888743333667788888888999999999999986
No 245
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.19 E-value=0.0049 Score=58.97 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEEC-C----eEEE-cCCc--EEecceEEEecCCCcc
Q 018671 140 RHYATTQLSKSGVRLVRG-IVKDVDS-Q----KLIL-NDGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ~~~~~~~l~~~gV~v~~~-~V~~v~~-~----~v~~-~~g~--~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+...+.|++++.+ ++++++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344445556679999988 7877754 2 4566 4664 6899999999998764
No 246
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.13 E-value=0.0055 Score=60.00 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=32.9
Q ss_pred HHHHHHhCCCEEEeC-ceEEEECCe---EEEcCCcEEecceEEEecCCCcc
Q 018671 143 ATTQLSKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 143 ~~~~l~~~gV~v~~~-~V~~v~~~~---v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+++.|++++.+ .|.+++.+. |.+.+| ++.+|.||+|+|.-..
T Consensus 189 L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 189 LRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccccc
Confidence 334455778999888 788886542 555555 6999999999996543
No 247
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0028 Score=65.85 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=80.9
Q ss_pred ccCcCCCCHHHHHHHHHHHHHHHhhccCCCCCHHHhccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEE
Q 018671 45 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 124 (352)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 124 (352)
+....+++++-+.- ...|+..... .-+...+.+++|+|||+||+|+.+|..|.+.+ ..|+
T Consensus 1753 e~pv~iksie~aii-----d~af~egwm~-p~pp~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~ 1812 (2142)
T KOG0399|consen 1753 EPPVGIKSIECAII-----DKAFEEGWMK-PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVT 1812 (2142)
T ss_pred cCCccccchhhHHH-----HHHHHhcCCc-cCCcccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEE
Confidence 45566777765531 1234444432 23345567789999999999999999999887 8999
Q ss_pred EEeCC-CCC-------CC--CcHHHHHHHHHHHHhCCCEEEeC-ceEEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 125 LIEAN-EIL-------SS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 125 lv~~~-~~l-------~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.++. ++. |. ++..+.+.-.+.|.+.||++.++ +|-. + +.+ |+-.-+.|.||+|+|..-+
T Consensus 1813 vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk---~-vs~-d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1813 VYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK---H-VSL-DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred EEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc---c-ccH-HHHhhccCeEEEEeCCCCC
Confidence 99986 432 32 35666666777889999999988 5421 1 111 2223457899999997643
No 248
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.09 E-value=0.0045 Score=62.97 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.++|||+|+.|...|..+++++ .+|.+|+..
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G--------------~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERG--------------LKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 6999999999999999999987 788888853
No 249
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.07 E-value=0.0065 Score=58.25 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=62.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC------------------CCCc---------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------------------SSFD--------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l------------------~~~~--------- 136 (352)
.|+|||+||+|..+|..|++.+ .+|.++|+. .+. +...
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999876 667777663 210 0000
Q ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE---EEcCCcEEecceEEEecCC
Q 018671 137 ------------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL---ILNDGTEVPYGLLVWSTGV 186 (352)
Q Consensus 137 ------------------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v---~~~~g~~i~~D~vi~a~G~ 186 (352)
..+-+.+.+..++.|++++.+ ++..+.. +++ +..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 122334555566789999988 7777653 222 2233468999999999997
Q ss_pred Ccc
Q 018671 187 GPS 189 (352)
Q Consensus 187 ~~~ 189 (352)
...
T Consensus 151 ~s~ 153 (396)
T COG0644 151 NSA 153 (396)
T ss_pred chH
Confidence 653
No 250
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.04 E-value=0.0093 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhH
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
..|+||||||+|+-+|..|++.+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G 62 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGG 62 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC
Confidence 48999999999999999999865
No 251
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0021 Score=61.12 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=21.1
Q ss_pred cEEEECCChHHHHHHHHHHHhH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
.|+|||||.+|||.|.+.++.+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred cEEEECCCccchHHHHHHHhcC
Confidence 7999999999999999999987
No 252
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.03 E-value=0.00063 Score=65.94 Aligned_cols=97 Identities=31% Similarity=0.442 Sum_probs=25.5
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCC-------------------------------
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------- 134 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------- 134 (352)
|||||||++|+-.|...++.+ .+|.|||+...+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 899999999999999999987 89999998643210
Q ss_pred -------------------Cc-HHHHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEEcC---CcEEecceEEEecC
Q 018671 135 -------------------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILND---GTEVPYGLLVWSTG 185 (352)
Q Consensus 135 -------------------~~-~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~---g~~i~~D~vi~a~G 185 (352)
++ ......+.+.+.+.||+++.+ .|.++..+ +|++.+ ..++.++.+|=|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 001112334455678999888 67776543 455544 35799999999999
Q ss_pred CCcchhhhhcCCC
Q 018671 186 VGPSTLVKSLDLP 198 (352)
Q Consensus 186 ~~~~~~~~~~~l~ 198 (352)
-- .+...+|.+
T Consensus 148 ~g--~l~~~aG~~ 158 (428)
T PF12831_consen 148 DG--DLAALAGAP 158 (428)
T ss_dssp -------------
T ss_pred cc--ccccccccc
Confidence 42 344444443
No 253
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.01 E-value=0.0085 Score=57.35 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEE---C--CeEEEc-CCc--EEecceEEEecCCCcc
Q 018671 140 RHYATTQLSKSGVRLVRG-IVKDVD---S--QKLILN-DGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 140 ~~~~~~~l~~~gV~v~~~-~V~~v~---~--~~v~~~-~g~--~i~~D~vi~a~G~~~~ 189 (352)
...+.+.+.+.|+.++.+ +++++. + ..|.+. +|+ ++.+|+||-|-|....
T Consensus 106 ~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 106 TRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 344555566678888877 555552 2 267775 775 6899999999998764
No 254
>PRK07538 hypothetical protein; Provisional
Probab=97.01 E-value=0.0079 Score=57.98 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHh-CC-CEEEeC-ceEEEEC--C--eEEEcCC-----cEEecceEEEecCCCcc
Q 018671 141 HYATTQLSK-SG-VRLVRG-IVKDVDS--Q--KLILNDG-----TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 141 ~~~~~~l~~-~g-V~v~~~-~V~~v~~--~--~v~~~~g-----~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+ .| ++++.+ +|++++. + .+.+.++ +++.+|+||-|-|....
T Consensus 106 ~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 334444444 35 468888 7888864 3 2444443 48999999999998664
No 255
>PRK06126 hypothetical protein; Provisional
Probab=96.91 E-value=0.0097 Score=59.57 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEECC--e--EEE---cCCc--EEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~-~gV~v~~~-~V~~v~~~--~--v~~---~~g~--~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+++ .+|+++.+ +|++++.+ . +.+ .+|+ ++.+|.||.|.|....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 33444455554 48999999 89888653 2 333 2353 6899999999998764
No 256
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.88 E-value=0.017 Score=52.84 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEE----CC---eEEEcCCcEEecceEEEecCCCcchhhh
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVPYGLLVWSTGVGPSTLVK 193 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~----~~---~v~~~~g~~i~~D~vi~a~G~~~~~~~~ 193 (352)
..+.++..+++.|+.++.+ .|+.+. ++ .|.+++|..+.++.+|+++|.--+.++.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 3455566677889999988 676665 22 5778899999999999999987776655
No 257
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.012 Score=56.34 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhH
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
++|+|||||++|+.+|.+|.+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~ 24 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSP 24 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCC
Confidence 48999999999999999998754
No 258
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.78 E-value=0.0056 Score=63.74 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||++|+-+|..|++.. ++.+|+|+|+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~ 34 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERN 34 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecC
Confidence 7999999999999999998762 11677777765
No 259
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.73 E-value=0.013 Score=60.21 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCCcEEecceEEEecCCCcchhhh
Q 018671 143 ATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 193 (352)
Q Consensus 143 ~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~~~~~~~ 193 (352)
+.+.+.+ |++++.+ +|++++. +. |.+++|+.+.+|.||+|+|.....+..
T Consensus 414 L~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 414 LLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred HHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 3333445 7888877 6877753 33 445566678899999999987765443
No 260
>PRK11445 putative oxidoreductase; Provisional
Probab=96.72 E-value=0.021 Score=53.80 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.7
Q ss_pred HhCCCEEEeC-ceEEEEC--Ce--EEE-cCCc--EEecceEEEecCCCcc
Q 018671 148 SKSGVRLVRG-IVKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 148 ~~~gV~v~~~-~V~~v~~--~~--v~~-~~g~--~i~~D~vi~a~G~~~~ 189 (352)
.+.||+++.+ ++++++. +. |.+ ++|+ ++.+|.||.|.|....
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3568999988 7877754 33 443 4664 6899999999998754
No 261
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.64 E-value=0.039 Score=47.71 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=54.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC-------CCc--------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-------SFD-------------------- 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-------~~~-------------------- 136 (352)
.|+|||+||+|+.+|..|++.+ .+|.++|+. .+.. .|+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 7999999999999999999876 899999975 3211 111
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEE--EC-C---eEEEc-----------CCcEEecceEEEecCCC
Q 018671 137 -----------DRLRHYATTQLSKSGVRLVRG-IVKDV--DS-Q---KLILN-----------DGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 -----------~~~~~~~~~~l~~~gV~v~~~-~V~~v--~~-~---~v~~~-----------~g~~i~~D~vi~a~G~~ 187 (352)
.++...+....-+.|+++... .|+++ .+ + +|..+ |--.+.+..||=+||+.
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 112222222233478888877 66664 23 2 22221 22379999999999998
Q ss_pred cc
Q 018671 188 PS 189 (352)
Q Consensus 188 ~~ 189 (352)
.+
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 76
No 262
>PLN02985 squalene monooxygenase
Probab=96.60 E-value=0.025 Score=56.15 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhC-CCEEEeCceEEEE-CC----eEEE--cCCcE--EecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKS-GVRLVRGIVKDVD-SQ----KLIL--NDGTE--VPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~-gV~v~~~~V~~v~-~~----~v~~--~~g~~--i~~D~vi~a~G~~~~ 189 (352)
++.+.+.+.+.+. +|+++.++++++. .+ +|++ ++|++ +.+|+||.|.|....
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 3445555555555 7888877655543 22 2444 35654 568999999998765
No 263
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.59 E-value=0.011 Score=56.34 Aligned_cols=91 Identities=29% Similarity=0.483 Sum_probs=63.0
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC---CC-CCCcH----------HHHHHHHHHHHhCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL-SSFDD----------RLRHYATTQLSKSG 151 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~---~l-~~~~~----------~~~~~~~~~l~~~g 151 (352)
++|||+|..|...|..+.+.. ++.+|+++.... .. +..+. .+.... ....+.+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~------------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 67 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL------------LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP-RFNRATG 67 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC------------CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccc-hhHHhhC
Confidence 589999999999999977654 236676665542 11 11111 111111 1124678
Q ss_pred CEEEeC-ceEEEECC--eEEEcCCcEEecceEEEecCCCcch
Q 018671 152 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 190 (352)
Q Consensus 152 V~v~~~-~V~~v~~~--~v~~~~g~~i~~D~vi~a~G~~~~~ 190 (352)
++++.+ +|.+++.. .+.+.+| ++.+|.+++++|.+|..
T Consensus 68 i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 68 IDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred CEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccC
Confidence 999988 79999864 6778888 89999999999999984
No 264
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.57 E-value=0.024 Score=56.76 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHhCCCEEEeC-ceEEEEC--Ce---EEEc---CC--cEEecceEEEecCCCcchhhhhcC
Q 018671 147 LSKSGVRLVRG-IVKDVDS--QK---LILN---DG--TEVPYGLLVWSTGVGPSTLVKSLD 196 (352)
Q Consensus 147 l~~~gV~v~~~-~V~~v~~--~~---v~~~---~g--~~i~~D~vi~a~G~~~~~~~~~~~ 196 (352)
..++|++++++ +|+++.. +. |.+. ++ .++.+|.||.|+|.-...+....+
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred HHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 34678999888 7888753 32 4442 23 368999999999987765544333
No 265
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.48 E-value=0.031 Score=55.42 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEECC--e---EEE--cCC--cEEecceEEEecC-CCcc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--K---LIL--NDG--TEVPYGLLVWSTG-VGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~---v~~--~~g--~~i~~D~vi~a~G-~~~~ 189 (352)
+...+.+.+++.||+++++ +++++..+ . |.+ .++ .++.++.||+|+| +.++
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 4455566667789999888 78887542 2 434 343 3689999999998 5544
No 266
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.37 E-value=0.05 Score=53.36 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEE--CCeE--EEcCCcEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSKSGVRLVRGIVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~~gV~v~~~~V~~v~--~~~v--~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++.||+++.+.+..+. .+.+ ...+++.+.++.||+|||..+.
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 34455555666778887765555443 2332 1235667999999999998664
No 267
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.37 E-value=0.037 Score=56.42 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCC--CEEEeC-ceEEEECC-------eEEEc------CC--cEEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSG--VRLVRG-IVKDVDSQ-------KLILN------DG--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~g--V~v~~~-~V~~v~~~-------~v~~~------~g--~~i~~D~vi~a~G~~~~ 189 (352)
+.+.+.+.+.+.+ +++..+ ++++++.+ .+++. +| +++.+|.||-|=|.+..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 4555666676766 466777 78887532 24553 35 57999999999998643
No 268
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.25 E-value=0.077 Score=50.94 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=35.1
Q ss_pred HHHHHhCCCEEEeC-ceEEEEC---Ce---EEEcCCcEEecceEEEecCCCcchhhhhcC
Q 018671 144 TTQLSKSGVRLVRG-IVKDVDS---QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 196 (352)
Q Consensus 144 ~~~l~~~gV~v~~~-~V~~v~~---~~---v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~ 196 (352)
.+.+.+.|++++.+ +|++++. +. |.+++| ++.++.||+|+|.....+.+.++
T Consensus 190 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g 248 (407)
T TIGR01373 190 ARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAG 248 (407)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcC
Confidence 34456779999988 7888852 22 445566 69999999988876554444333
No 269
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.059 Score=49.62 Aligned_cols=109 Identities=27% Similarity=0.371 Sum_probs=71.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC------------------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------ 133 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~------------------------------ 133 (352)
...|||||.-|+..|...++++ .++.+++.. .+..
T Consensus 22 DylvIGgGSGGvasARrAa~~G--------------Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG 87 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHG--------------AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYG 87 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcC--------------ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcC
Confidence 6799999999999999999887 667676655 3310
Q ss_pred -------CCc------------HHHHHHHHHHHHhCCCEEEeCceEEEECC--eEEEcCCcE--EecceEEEecCCCcc-
Q 018671 134 -------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTE--VPYGLLVWSTGVGPS- 189 (352)
Q Consensus 134 -------~~~------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~--~v~~~~g~~--i~~D~vi~a~G~~~~- 189 (352)
.++ ..+....++.|.+.+|+++.++-.=+++. .|...||++ +.+..+++|+|.+|.
T Consensus 88 ~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 88 FPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII 167 (478)
T ss_pred CccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence 011 11222233445667888888855555666 455567753 689999999999987
Q ss_pred hhhhhcCCCCCCCCcccc
Q 018671 190 TLVKSLDLPKSPGGRIGI 207 (352)
Q Consensus 190 ~~~~~~~l~~~~~G~i~V 207 (352)
|-+....+..|.+|++..
T Consensus 168 PnIpG~E~gidSDgff~L 185 (478)
T KOG0405|consen 168 PNIPGAELGIDSDGFFDL 185 (478)
T ss_pred CCCCchhhccccccccch
Confidence 444444455555565543
No 270
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.12 E-value=0.092 Score=49.02 Aligned_cols=123 Identities=18% Similarity=0.270 Sum_probs=72.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCC------Cc--------------------
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FD-------------------- 136 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~------~~-------------------- 136 (352)
..++|||+||.|.-.|...++++ .+...++.. .+... .|
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlG--------------lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~ 105 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLG--------------LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFA 105 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhc--------------ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHH
Confidence 38999999999999999998887 666666653 22110 00
Q ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeCceEEEECCeEEEc--CC--cEEecceEEEecCCCc
Q 018671 137 ------------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGP 188 (352)
Q Consensus 137 ------------------------~~~~~~~~~~l~~~gV~v~~~~V~~v~~~~v~~~--~g--~~i~~D~vi~a~G~~~ 188 (352)
..+..-++..|++.+|++..+.-+=+++++|..+ || ..+++..+|+|||..-
T Consensus 106 ~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV 185 (506)
T KOG1335|consen 106 SRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV 185 (506)
T ss_pred hcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc
Confidence 1112223344556666666653333455666653 44 4689999999999865
Q ss_pred chhhhhcCCCCCCCCccccCCccccCCCCC-EEEEc
Q 018671 189 STLVKSLDLPKSPGGRIGIDEWLRVPSVQD-VFAVG 223 (352)
Q Consensus 189 ~~~~~~~~l~~~~~G~i~Vd~~l~~~~~~~-IfaiG 223 (352)
.++. |++.|++--+.-|.-|.....|. +-.+|
T Consensus 186 ~~~P---GI~IDekkIVSStgALsL~~vPk~~~viG 218 (506)
T KOG1335|consen 186 TPFP---GITIDEKKIVSSTGALSLKEVPKKLTVIG 218 (506)
T ss_pred CCCC---CeEecCceEEecCCccchhhCcceEEEEc
Confidence 5443 55555543333344454444454 33344
No 271
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.11 E-value=0.0096 Score=41.74 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred EECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 88 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 88 VvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
|||+|.+|+.+|..|++.+ .+|+++|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCc
Confidence 8999999999999999875 8999999874
No 272
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.91 E-value=0.04 Score=52.50 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEcCCcEEecceEEEecCCCcchhh----hhcCCCCC
Q 018671 135 FDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLV----KSLDLPKS 200 (352)
Q Consensus 135 ~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~~~~~~----~~~~l~~~ 200 (352)
.-+++.+.+.+.+++.|++++.+ +|.+++- + .|.+++|+++++|.||+|+|....+++ +..|+.+.
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccc
Confidence 34678888999999999999999 8987754 2 577889999999999999999998644 34455443
No 273
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.83 E-value=0.012 Score=55.29 Aligned_cols=48 Identities=38% Similarity=0.656 Sum_probs=39.4
Q ss_pred hCCCEEEeC-ceEEEEC--CeEEEcCCcEEecceEEEecCCCcch--hhhhcC
Q 018671 149 KSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST--LVKSLD 196 (352)
Q Consensus 149 ~~gV~v~~~-~V~~v~~--~~v~~~~g~~i~~D~vi~a~G~~~~~--~~~~~~ 196 (352)
..||-+..+ +|..++. ..|+++||.+|.||-+++|||.+|.. .+++.+
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~ 321 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEAS 321 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcC
Confidence 458889999 7888875 47999999999999999999999974 455443
No 274
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.04 Score=53.72 Aligned_cols=76 Identities=29% Similarity=0.349 Sum_probs=51.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 163 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~ 163 (352)
++++|+|+|.+|..+|..|++.+ .+|++++...- +.+ +...+.|.+.|++++...+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch--
Confidence 69999999999999999999887 89999987521 122 223345677788877663221
Q ss_pred CCeEEEcCCcEEecceEEEecCCCcc
Q 018671 164 SQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 164 ~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
...-.+|+||.++|..++
T Consensus 64 --------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 --------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred --------hHhhcCCEEEECCCCCCC
Confidence 001136777777776654
No 275
>PRK09897 hypothetical protein; Provisional
Probab=95.76 E-value=0.044 Score=54.44 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=47.0
Q ss_pred EEcCCcEEecceEEEecCCCcchhhhhcCCC-------CCCCCccccCC--ccccCCCC--CEEEEccccccccCCCCcC
Q 018671 168 ILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP-------KSPGGRIGIDE--WLRVPSVQ--DVFAVGDCSGYLESTGKTV 236 (352)
Q Consensus 168 ~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l~-------~~~~G~i~Vd~--~l~~~~~~--~IfaiGD~a~~~~~~~~~~ 236 (352)
..++ +...+|++|=|+|.++-+. ++++++ ...+.-..+++ +|+.++.+ .||.. .+|.--+..|
T Consensus 428 ~~~~-~~~~~~~~i~a~G~~~~~~-~~~pf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~p~~~~~~p 501 (534)
T PRK09897 428 KTED-NSYSFDVFIDARGQRPLKV-KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFG----ALPWLMHDQP 501 (534)
T ss_pred EeCC-CceEeCEEEECCCCCCCcc-ccCCchHHHHHHHHcCCCCCCCCCCeeeeCCCccCcceEEE----ecchhccCCC
Confidence 3344 5789999999999997521 111111 11122333444 55554432 35532 2333223344
Q ss_pred CCCchHHHHHHHHHHHHHHHHHh
Q 018671 237 LPALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 237 ~~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
..+-...+.+.|..+++++....
T Consensus 502 ~~~g~~~~~~~~~~~~~~~~~~~ 524 (534)
T PRK09897 502 FVQGLTACAEIGEAMARAVVKPA 524 (534)
T ss_pred chhhhHHHHHHHHHHHHHHhhhh
Confidence 45555667778888888886654
No 276
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.72 E-value=0.011 Score=56.67 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=28.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 128 (352)
++|+|||||++|+|+|..|++.+ .+|+|++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~G--------------l~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRG--------------VPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEc
Confidence 38999999999999999999987 88999984
No 277
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.63 E-value=0.022 Score=49.33 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
+++|+|||||.+|..-+..|.+.+ .+|+++++. +.+++. +..++.+|+++.....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~-- 63 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD-- 63 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC--
Confidence 359999999999999999998876 899999763 223332 2223335665544211
Q ss_pred ECCeEEEcCCcEEecceEEEecCCC-cc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVG-PS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~-~~ 189 (352)
.+.--.+++||.|||.. .|
T Consensus 64 --------~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 64 --------ADILEGAFLVIAATDDEELN 83 (205)
T ss_pred --------HHHhCCcEEEEECCCCHHHH
Confidence 01112489999999986 44
No 278
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.37 E-value=0.23 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.6
Q ss_pred cEEEECCChHHHHHHHHHHHh
Q 018671 85 HCVVVGGGPTGVEFSGELSDF 105 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~ 105 (352)
.|+|||+|.+|+-+|..+++.
T Consensus 13 DVlVIG~G~AGl~AAi~Aae~ 33 (608)
T PRK06854 13 DILIIGGGMAGCGAAFEAKEW 33 (608)
T ss_pred CEEEECcCHHHHHHHHHHHHh
Confidence 799999999999999999876
No 279
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.35 E-value=0.24 Score=50.04 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEE--CCe---EE---EcCCc--EEecceEEEecCCCc
Q 018671 141 HYATTQLSKSGVRLVRG-IVKDVD--SQK---LI---LNDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 141 ~~~~~~l~~~gV~v~~~-~V~~v~--~~~---v~---~~~g~--~i~~D~vi~a~G~~~ 188 (352)
..+.+.+++.||+++.+ .+.++. .+. +. ..+|+ .+.++.||+|||...
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 33444555678888887 677653 332 22 23554 589999999999754
No 280
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.31 E-value=0.021 Score=56.20 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=31.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 131 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~ 131 (352)
+.++|+|||||.+|+.+|..|.+.+ .+|+++|+. ++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G--------------~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFG--------------FDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--------------CceEEEeccCCc
Confidence 3469999999999999999999988 889999875 44
No 281
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.31 E-value=0.2 Score=50.52 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCEEEeC-ceEEEE--CCeE---EE---cCCc--EEecceEEEecCCCc
Q 018671 142 YATTQLSKSGVRLVRG-IVKDVD--SQKL---IL---NDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 142 ~~~~~l~~~gV~v~~~-~V~~v~--~~~v---~~---~~g~--~i~~D~vi~a~G~~~ 188 (352)
.+.+.+++.||+++.+ .++++. ++.| .. .+|+ .+.++.||+|+|...
T Consensus 134 ~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 134 TLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 3344455668888877 677663 2332 22 3564 588999999999653
No 282
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=95.29 E-value=0.2 Score=47.34 Aligned_cols=106 Identities=23% Similarity=0.430 Sum_probs=68.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC------------------CCC-----------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI------------------LSS----------- 134 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~------------------l~~----------- 134 (352)
.|+||||||+|+..|.-|.++.... ..+.+|.+++.. .+ +|.
T Consensus 78 Dv~IVG~GPAGLsaAIrlKQla~~~--------~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 78 DVVIVGAGPAGLSAAIRLKQLAAKA--------NKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred cEEEECCCchhHHHHHHHHHHHHhc--------CCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 7999999999999999988775321 123566666553 22 110
Q ss_pred ----------------------Cc---------HHHHHHHHHHHHhCCCEEEeC-ceEEEE--C-C---eEEE-------
Q 018671 135 ----------------------FD---------DRLRHYATTQLSKSGVRLVRG-IVKDVD--S-Q---KLIL------- 169 (352)
Q Consensus 135 ----------------------~~---------~~~~~~~~~~l~~~gV~v~~~-~V~~v~--~-~---~v~~------- 169 (352)
+. ..+...+-+..++.||+|+.+ ...+|- + + +|.+
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 00 234556667778899999877 555542 1 1 2222
Q ss_pred --------cCCcEEecceEEEecCCCcc---hhhhhcCCC
Q 018671 170 --------NDGTEVPYGLLVWSTGVGPS---TLVKSLDLP 198 (352)
Q Consensus 170 --------~~g~~i~~D~vi~a~G~~~~---~~~~~~~l~ 198 (352)
+.|-++.+...|+|-|.+.. .+++..+|.
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR 269 (621)
T ss_pred CCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence 23457889999999999886 256666553
No 283
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.27 E-value=0.2 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred cEEEECCChHHHHHHHHHHHhH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
.|+|||+|.+|+-.|.++++.+
T Consensus 18 DVlVIG~G~AGl~AAi~aae~G 39 (541)
T PRK07804 18 DVVVVGSGVAGLTAALAARRAG 39 (541)
T ss_pred CEEEECccHHHHHHHHHHHHcC
Confidence 7999999999999999988754
No 284
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.23 E-value=0.28 Score=47.68 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C----eEEEc--CCc--EEecceEEEecCCCc
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILN--DGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~----~v~~~--~g~--~i~~D~vi~a~G~~~ 188 (352)
..+.+.+.+.+++.||+++.+ +|+++.. + ++++. +++ .+.++.||+|+|...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 345666777778889999998 7888753 2 24443 343 478999999999543
No 285
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.16 E-value=0.21 Score=49.28 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEEC--Ce---EEEcC-C--cEEecceEEEecCCCcc
Q 018671 138 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LILND-G--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 138 ~~~~~~~~~l~~-~gV~v~~~-~V~~v~~--~~---v~~~~-g--~~i~~D~vi~a~G~~~~ 189 (352)
.+.+.+.+.+++ .+|+++.+ .++++.. +. +...+ + ..+.++.||+|+|....
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 444555566666 58999988 7887743 22 33332 3 36899999999997543
No 286
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.10 E-value=0.11 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEECCChHHHHHHHHHHHhH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
+|+|||||.+|+-.|..|++.+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G 25 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG 25 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC
Confidence 8999999999999999999876
No 287
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.06 E-value=0.24 Score=48.12 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHh-CCCEEEeC-ceEEEE--CCe---EE-EcCCc--EEecceEEEecCCCc
Q 018671 137 DRLRHYATTQLSK-SGVRLVRG-IVKDVD--SQK---LI-LNDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 137 ~~~~~~~~~~l~~-~gV~v~~~-~V~~v~--~~~---v~-~~~g~--~i~~D~vi~a~G~~~ 188 (352)
..+.+.+.+.+++ .||+++.+ +++++. ++. +. ..+++ ++.++.||+|+|-..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 3455556666654 48999998 788864 232 22 33454 589999999999643
No 288
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.02 E-value=0.088 Score=50.95 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=46.7
Q ss_pred ccEEEEEeCCC-C--CC----CC-----c--HHHHHH-HHHHHHhCCCEEEeC-ceEEEEC--CeEEEcC---CcEEe--
Q 018671 120 YIHVTLIEANE-I--LS----SF-----D--DRLRHY-ATTQLSKSGVRLVRG-IVKDVDS--QKLILND---GTEVP-- 176 (352)
Q Consensus 120 ~~~V~lv~~~~-~--l~----~~-----~--~~~~~~-~~~~l~~~gV~v~~~-~V~~v~~--~~v~~~~---g~~i~-- 176 (352)
+.+|+|+++.+ + .| .+ . .+.... ..+.+.+.||+++.+ +|++++. ..+.+.+ ++++.
T Consensus 12 ~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~ 91 (427)
T TIGR03385 12 ESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEES 91 (427)
T ss_pred CCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecC
Confidence 48999999863 2 12 11 1 111212 223448889999877 8999975 3566643 45677
Q ss_pred cceEEEecCCCcc
Q 018671 177 YGLLVWSTGVGPS 189 (352)
Q Consensus 177 ~D~vi~a~G~~~~ 189 (352)
+|.+|+|||.+|.
T Consensus 92 yd~lIiATG~~p~ 104 (427)
T TIGR03385 92 YDYLILSPGASPI 104 (427)
T ss_pred CCEEEECCCCCCC
Confidence 9999999999887
No 289
>PRK08275 putative oxidoreductase; Provisional
Probab=95.00 E-value=0.33 Score=48.72 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEE---CC---eEE---EcCCc--EEecceEEEecCCCc
Q 018671 140 RHYATTQLSKSGVRLVRG-IVKDVD---SQ---KLI---LNDGT--EVPYGLLVWSTGVGP 188 (352)
Q Consensus 140 ~~~~~~~l~~~gV~v~~~-~V~~v~---~~---~v~---~~~g~--~i~~D~vi~a~G~~~ 188 (352)
.+.+.+.+++.||+++.+ .++++. .+ ++. ..+|+ .+.++.||+|||...
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 344555566678998888 677764 22 222 23554 478999999999864
No 290
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.90 E-value=0.29 Score=47.19 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=48.2
Q ss_pred HHHHHhC-CCEEEeC-ceEEEECC-----eEEEc-----CCcEEecceEEEecCCCcchhhhhcCCCC-CCCCccccC-C
Q 018671 144 TTQLSKS-GVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPSTLVKSLDLPK-SPGGRIGID-E 209 (352)
Q Consensus 144 ~~~l~~~-gV~v~~~-~V~~v~~~-----~v~~~-----~g~~i~~D~vi~a~G~~~~~~~~~~~l~~-~~~G~i~Vd-~ 209 (352)
.+.+.+. |++++.+ +|++++.. .|... +..++.++.|++.+|...-+++..++++- ..-|.+.|- .
T Consensus 188 ~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~ 267 (488)
T PF06039_consen 188 VEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQ 267 (488)
T ss_pred HHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccce
Confidence 3334455 8999999 89988753 34442 23579999999999998888999988742 222344443 4
Q ss_pred cccc
Q 018671 210 WLRV 213 (352)
Q Consensus 210 ~l~~ 213 (352)
+|++
T Consensus 268 fl~~ 271 (488)
T PF06039_consen 268 FLRC 271 (488)
T ss_pred EEec
Confidence 6665
No 291
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.87 E-value=0.1 Score=42.53 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=51.0
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCc-eEEEEC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 164 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~-V~~v~~ 164 (352)
|+|+|+|.+|.-+|..|++.+ .+|+++.+.. ..+.+++.|+.+.... -..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSP------------RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHH------------HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccc------------cHHhhhheeEEEEecccceeccc
Confidence 689999999999999998865 8999998621 1234778899887664 111222
Q ss_pred CeEEEcCC--cEEecceEEEecCCCcc
Q 018671 165 QKLILNDG--TEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 165 ~~v~~~~g--~~i~~D~vi~a~G~~~~ 189 (352)
.. ...+. ..-++|.||+|+-....
T Consensus 55 ~~-~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 55 PI-VISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp EE-EESSHGHHHSTESEEEE-SSGGGH
T ss_pred cc-ccCcchhccCCCcEEEEEecccch
Confidence 11 12111 23569999999866554
No 292
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.78 E-value=0.12 Score=46.59 Aligned_cols=40 Identities=33% Similarity=0.475 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 131 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 131 (352)
++|+|||||.+|+..|..|++... | .+.+..|+|++...+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~s------f--~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPS------F--KKGELDITIFESKEI 50 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCc------c--CCCceeEEEEeeccc
Confidence 699999999999999999987531 1 123478888887544
No 293
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.76 E-value=0.082 Score=45.66 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=46.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
+++|+|||||..|...|..|.+.+ .+|+++.+ .+.+.+. +......+.+....
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~-----~~~~~l~----~l~~~~~i~~~~~~---- 62 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISP-----ELTENLV----KLVEEGKIRWKQKE---- 62 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcC-----CCCHHHH----HHHhCCCEEEEecC----
Confidence 369999999999999999998866 89999974 2233332 22333334432211
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+....--.+|+||.||+....
T Consensus 63 ------~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 63 ------FEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred ------CChhhcCCceEEEEcCCCHHH
Confidence 111112348999999987653
No 294
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.75 E-value=0.038 Score=51.54 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|..+|..|++-+ .+|+++|+.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdG--------------RrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDG--------------RRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCC--------------cEEEEEecc
Confidence 6999999999999999999866 899999985
No 295
>PTZ00367 squalene epoxidase; Provisional
Probab=94.57 E-value=0.12 Score=51.82 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
..|+|||||++|+-+|..|++.+ .+|+++|+..
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G--------------~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQG--------------RKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcC--------------CEEEEEcccc
Confidence 48999999999999999999876 8999999853
No 296
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.13 Score=48.08 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC---------CCCCc--HHHHHHHHHHHHhCCCE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------LSSFD--DRLRHYATTQLSKSGVR 153 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~---------l~~~~--~~~~~~~~~~l~~~gV~ 153 (352)
+|.|||+||+|+-.|..|.+.- +..+|++++..+. .|..+ +.+.+.+.+.++.....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~------------~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRH------------PNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcC------------CCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 8999999999999998886531 3489999998532 12222 34445556666666666
Q ss_pred EEeC-ce-EEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 154 LVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 154 v~~~-~V-~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+..+ .| +.+ .+.+ -+-.+|.|+++.|....
T Consensus 90 f~gNv~vG~dv-----sl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 90 FFGNVKVGRDV-----SLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred EEecceecccc-----cHHH-HhhcccEEEEEecCCCC
Confidence 6655 43 222 2211 02349999999998876
No 297
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.55 E-value=0.066 Score=54.48 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.5
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++..+|+|||||++|+-+|..|++.+ .+|+++|+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--------------i~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--------------FDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecc
Confidence 45579999999999999999999877 899999985
No 298
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.46 E-value=0.041 Score=49.59 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=30.2
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..+|+|+|.|..|.++|..|+..+- .+++|++..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-------------g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-------------GAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCC
Confidence 44699999999999999999998762 689999876
No 299
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.1 Score=47.76 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|-|||||.+|.|.|-.+++.+ ++|.|.+..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~G--------------v~V~L~EMR 35 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRG--------------VPVILYEMR 35 (439)
T ss_pred ceEEEcccccccHHHHHHHHcC--------------CcEEEEEcc
Confidence 7999999999999999999988 899998864
No 300
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.05 Score=49.30 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=70.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
.+|+|+|||..|.+.|....-++ .+|++++.+ +-|..+ .+.+ ...|+.+......+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--------------A~Vtild~n~~rl~~l--------dd~f-~~rv~~~~st~~~i 225 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--------------ADVTILDLNIDRLRQL--------DDLF-GGRVHTLYSTPSNI 225 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--------------CeeEEEecCHHHHhhh--------hHhh-CceeEEEEcCHHHH
Confidence 38999999999999999888877 899999875 333221 1111 11233333211111
Q ss_pred ECCeEEEcCCcEEecceEE---EecCCCcchhhhhcCCCCCCCCccccC---------CccccCC-CCCEEEEccccccc
Q 018671 163 DSQKLILNDGTEVPYGLLV---WSTGVGPSTLVKSLDLPKSPGGRIGID---------EWLRVPS-VQDVFAVGDCSGYL 229 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi---~a~G~~~~~~~~~~~l~~~~~G~i~Vd---------~~l~~~~-~~~IfaiGD~a~~~ 229 (352)
+. ..-.+|.+| +.+|.+++.+....-+..-+.|.+.|| ++.+.++ .+-+|..=|...+-
T Consensus 226 ee--------~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~ 297 (371)
T COG0686 226 EE--------AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYG 297 (371)
T ss_pred HH--------HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEe
Confidence 10 123466663 557777765432221111122444443 2223223 33477777766543
Q ss_pred cCCCCcCCCCchHHHHHHHH
Q 018671 230 ESTGKTVLPALAQVAERQGK 249 (352)
Q Consensus 230 ~~~~~~~~~~~~~~A~~qg~ 249 (352)
.++-....|++...|...+-
T Consensus 298 VaNmPgaVprTst~AL~nat 317 (371)
T COG0686 298 VANMPGAVPRTSTQALTNAT 317 (371)
T ss_pred cCCCCccccchhHHHhhhcc
Confidence 32222345777766666553
No 301
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.44 E-value=0.049 Score=52.36 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
+|+|||||.+|+.+|.+|++.+ .+|+++|++.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g--------------~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRG--------------YQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCC
Confidence 8999999999999999999876 8999999863
No 302
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.25 E-value=0.1 Score=51.77 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
.|+|||||.+|+-+|.+|+.++ .+|.|+|+.++.
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG--------------~~V~LlEk~d~~ 41 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRG--------------LKVLLCEKDDLA 41 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCCCC
Confidence 7999999999999999999887 899999988653
No 303
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.23 E-value=0.11 Score=45.31 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=47.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
.++|+|||||..|..=+..|.+.+ .+|+++.+. +.+++.. ......|+++....
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap~-----i~~el~~----l~~~~~i~~~~r~~--- 78 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSKK-----FSKEFLD----LKKYGNLKLIKGNY--- 78 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC-----CCHHHHH----HHhCCCEEEEeCCC---
Confidence 468999999999998888887766 899999753 3344432 23334566554321
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
++ +..-.+++||.||+-..
T Consensus 79 ~~-------~dl~g~~LViaATdD~~ 97 (223)
T PRK05562 79 DK-------EFIKDKHLIVIATDDEK 97 (223)
T ss_pred Ch-------HHhCCCcEEEECCCCHH
Confidence 11 11124899999987543
No 304
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.99 E-value=0.31 Score=45.73 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=50.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC--CCCC-------------------c------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI--LSSF-------------------D------ 136 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~--l~~~-------------------~------ 136 (352)
.++.||.||..+.+|..|.+.. ..++.++|+. .+ -|.+ +
T Consensus 4 D~igIG~GP~nLslA~~l~~~~-------------~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~s 70 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHG-------------DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFS 70 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH----------------EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTS
T ss_pred eEEEEeeCHHHHHHHHHhhhcC-------------CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCccc
Confidence 6899999999999999999876 1677888854 21 1100 0
Q ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEECC--------eEEEc----CCcEEecce
Q 018671 137 ------------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--------KLILN----DGTEVPYGL 179 (352)
Q Consensus 137 ------------------------~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--------~v~~~----~g~~i~~D~ 179 (352)
.+..+++.-..++.+-.+..+ +|++|+.. .|.+. +++++.++.
T Consensus 71 flnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~ 150 (341)
T PF13434_consen 71 FLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARN 150 (341)
T ss_dssp HHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESE
T ss_pred HHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCe
Confidence 122233333333445446677 78888653 34442 346899999
Q ss_pred EEEecCCCcc
Q 018671 180 LVWSTGVGPS 189 (352)
Q Consensus 180 vi~a~G~~~~ 189 (352)
||+++|..|.
T Consensus 151 vVla~G~~P~ 160 (341)
T PF13434_consen 151 VVLATGGQPR 160 (341)
T ss_dssp EEE----EE-
T ss_pred EEECcCCCCC
Confidence 9999997775
No 305
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.92 E-value=0.39 Score=45.56 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCCCCC--CcHHHHHHHHHHHHhCCCEEEeC-ceEEEECC--eEEEcCC-cEEecceEEEecCCCc
Q 018671 129 NEILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGP 188 (352)
Q Consensus 129 ~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~~--~v~~~~g-~~i~~D~vi~a~G~~~ 188 (352)
+++.|. -..++.+.+...+++.||+++++ +|++|+++ .+.+.++ ..+.+|.||+|+|..+
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 367663 35688899999999999999999 89999655 3444333 4699999999999865
No 306
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.91 E-value=0.077 Score=51.54 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+-+|..|++.+. +.+|+|+|+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~------------~~~V~vlEa~ 34 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGP------------DADITLLEAS 34 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCC------------CCCEEEEEcC
Confidence 79999999999999999988541 2678999875
No 307
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=0.074 Score=51.55 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
+|+|+|||.+|+.+|.+|++.+ .+|||.+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g--------------~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAG--------------YDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCC--------------CceEEEeccCcc
Confidence 8999999999999999999988 999999987443
No 308
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.74 E-value=0.081 Score=50.89 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+.+|.+|+..+ .+|+|+|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g--------------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG--------------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence 6999999999999999999876 789999875
No 309
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.65 E-value=0.082 Score=52.46 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 131 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 131 (352)
.|+|||||.+|+-+|.+++.++ .+|+|+|++++
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG--------------l~V~LvEk~d~ 40 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRG--------------LSVLLCEQDDL 40 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCC
Confidence 7999999999999999999987 89999998643
No 310
>PLN02268 probable polyamine oxidase
Probab=93.63 E-value=0.092 Score=50.90 Aligned_cols=31 Identities=35% Similarity=0.628 Sum_probs=26.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+.+|..|.+.+ .+|+++|+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g--------------~~v~vlEa~ 32 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDAS--------------FKVTLLESR 32 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 7999999999999999998765 677777764
No 311
>PRK07233 hypothetical protein; Provisional
Probab=93.44 E-value=0.083 Score=50.94 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+.+|..|++.+ .+|+|+|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--------------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--------------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEeC
Confidence 5899999999999999999876 778888875
No 312
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.41 E-value=0.11 Score=49.34 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
..|+|||||.+|+.+|.+|++.+ .+|+++++..
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G--------------~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERG--------------ADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC--------------CEEEEEecCc
Confidence 48999999999999999999987 6899998653
No 313
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=93.40 E-value=0.13 Score=52.40 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
..|+|||||.+|+.+|.+|+.++ .+|+|||+.++.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rG--------------l~V~LvE~~d~a 106 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRG--------------LRVGLVEREDFS 106 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeccccC
Confidence 37999999999999999999987 899999987543
No 314
>PRK07208 hypothetical protein; Provisional
Probab=93.34 E-value=0.1 Score=51.25 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|+|||||.+|+.+|..|++.+ .+|+++|+.
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g--------------~~v~v~E~~ 36 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRG--------------YPVTVLEAD 36 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 48999999999999999998865 778888864
No 315
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=93.31 E-value=0.12 Score=46.16 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|+.+|..|+..+ .+|++++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--------------~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--------------REVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcC--------------cEEEEEEcC
Confidence 7999999999999999999877 899999986
No 316
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.37 Score=44.47 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=48.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHH-hCCCEEEeC-ceEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS-KSGVRLVRG-IVKD 161 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~-~~gV~v~~~-~V~~ 161 (352)
.+|+|+|+|..|.-+|..|++.+ .+|+++.+.. +.+ +.++ +.|+.+... ....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--------------~~V~lv~r~~----------~~~-~~i~~~~Gl~i~~~g~~~~ 57 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--------------LPVRLILRDR----------QRL-AAYQQAGGLTLVEQGQASL 57 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEech----------HHH-HHHhhcCCeEEeeCCccee
Confidence 38999999999999999999866 7899998742 112 3333 346765432 2111
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+..... .....-++|.||+|+-....
T Consensus 58 ~~~~~~--~~~~~~~~D~viv~vK~~~~ 83 (305)
T PRK05708 58 YAIPAE--TADAAEPIHRLLLACKAYDA 83 (305)
T ss_pred eccCCC--CcccccccCEEEEECCHHhH
Confidence 111000 01111268999999866543
No 317
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.21 E-value=0.086 Score=40.18 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+++|+|||||..|..-+..|.+.+ .+|+++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g--------------A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG--------------AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT--------------BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEECCc
Confidence 359999999999999888887766 899999864
No 318
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.28 Score=47.95 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=52.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 163 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v~ 163 (352)
+|.|||.|.+|+.+|..|.+.+ .+|++++..... .. ....+.|++.|++++.+ ... .+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--------------~~V~~~D~~~~~-----~~-~~~~~~l~~~gi~~~~g~~~~-~~ 60 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--------------WEVVVSDRNDSP-----EL-LERQQELEQEGITVKLGKPLE-LE 60 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCCch-----hh-HHHHHHHHHcCCEEEECCccc-hh
Confidence 6899999999999999888877 899999875321 11 12234577789998766 221 10
Q ss_pred CCeEEEcCCcEEecceEEEecCCCcc
Q 018671 164 SQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 164 ~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
.+.. ..-.+|.||.++|..+.
T Consensus 61 --~~~~---~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 61 --SFQP---WLDQPDLVVVSPGIPWD 81 (459)
T ss_pred --hhhH---HhhcCCEEEECCCCCCC
Confidence 0000 01237888888888776
No 319
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=93.18 E-value=0.14 Score=48.56 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 131 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~ 131 (352)
..+|+|+|||.+|+.+|..|+++. +++.|+|+|+. ++
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~------------p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLG------------PDVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcC------------CCceEEEEecCCcc
Confidence 359999999999999999999876 34788889886 44
No 320
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.10 E-value=0.13 Score=50.88 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
..|+|||||..|+-+|..|++.+ .+|+++|+.+
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G--------------~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAG--------------LKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCC--------------CEEEEEEecC
Confidence 48999999999999999999988 8999999764
No 321
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=93.08 E-value=0.14 Score=49.54 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+..|..|++.. +.++|+|+|++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~------------p~~~i~lfE~~ 34 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAG------------PDVEVTLFEAD 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhC------------CCCcEEEEecC
Confidence 7999999999999999999876 34899999986
No 322
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.07 E-value=0.15 Score=42.11 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=27.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEe
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE 127 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~ 127 (352)
+++|+|||||..|...|..|.+.+ .+|++|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g--------------a~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG--------------AFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEc
Confidence 369999999999999999998866 8999995
No 323
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=92.92 E-value=0.12 Score=50.35 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|+|||||.+|+.+|..|++... ..+.+|+++|+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~----------~~g~~v~vlE~~ 38 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIP----------ELPVELTLVEAS 38 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC----------CCCCcEEEEEcC
Confidence 489999999999999999987610 002678888875
No 324
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=1.7 Score=40.29 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=26.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 128 (352)
-..+|||||..|+.+|.+.+.++ ++|.+++-
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G--------------~kV~~lDf 50 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLG--------------AKVACLDF 50 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcC--------------CcEEEEee
Confidence 37899999999999999999988 67777754
No 325
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.84 E-value=1.2 Score=44.97 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEE--C----Ce---EEE---cCCc--EEecceEEEecCCCcc
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVD--S----QK---LIL---NDGT--EVPYGLLVWSTGVGPS 189 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~--~----~~---v~~---~~g~--~i~~D~vi~a~G~~~~ 189 (352)
+...+.+.+++.||+++.+ .++++. + +. +.. .+|+ .+.++.||+|||-...
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 4445556666778999888 677763 2 22 222 3554 5789999999998663
No 326
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=92.74 E-value=0.15 Score=49.95 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|+|||||.+|+-+|..|++.+.. ...+.+|+|+|+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~--------~~~~~~V~vlEa~ 39 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKD--------YNIDLNLILVEKE 39 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhc--------cCCCccEEEEecC
Confidence 4899999999999999999875310 0012689999886
No 327
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.68 E-value=0.19 Score=50.53 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=60.6
Q ss_pred cEEEECCChHHHHHHHH-------HHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHHHhCCCEEEe
Q 018671 85 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 156 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~-------l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~ 156 (352)
..+++|+|..++|.+.. +.+++ .+|+++... ..+..++..+...+.+.+++.||++++
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 46788999999988754 34443 344444433 344456777888888999999999999
Q ss_pred C-ceEEEECC-----eEEEc-CCc--EEecc-eEEEecC-CCcc
Q 018671 157 G-IVKDVDSQ-----KLILN-DGT--EVPYG-LLVWSTG-VGPS 189 (352)
Q Consensus 157 ~-~V~~v~~~-----~v~~~-~g~--~i~~D-~vi~a~G-~~~~ 189 (352)
+ +++++..+ +|+.. +++ .+.++ .||+|+| +.++
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcC
Confidence 9 78877542 34343 443 47785 6888665 4554
No 328
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.54 E-value=0.8 Score=42.38 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=49.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC--ceEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG--IVKD 161 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~--~V~~ 161 (352)
.+|+|||+|..|.-+|..|++.+ .+|+++.++. .+.+.+.|+.+... ...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g--------------~~V~~~~r~~-------------~~~~~~~g~~~~~~~~~~~- 57 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG--------------FDVHFLLRSD-------------YEAVRENGLQVDSVHGDFH- 57 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEEeCC-------------HHHHHhCCeEEEeCCCCee-
Confidence 48999999999999999999876 8999997642 02355667765431 111
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+-.+.......-++|.||+|+-....
T Consensus 58 ~~~~~~~~~~~~~~~~D~vilavK~~~~ 85 (313)
T PRK06249 58 LPPVQAYRSAEDMPPCDWVLVGLKTTAN 85 (313)
T ss_pred ecCceEEcchhhcCCCCEEEEEecCCCh
Confidence 1111111110112268999999876654
No 329
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.47 E-value=0.12 Score=43.69 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|.|||+|..|..+|..++..+ .+|++++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--------------YEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--------------SEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 5899999999999999999887 999999975
No 330
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=92.42 E-value=0.18 Score=51.23 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=35.0
Q ss_pred CccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 209 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 209 ~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
++++| +.|++||+|||+.. + ....+..+..+|++++.++...+.
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~----~---~~~l~~~s~~~g~~ag~~~~~~~~ 432 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGG----S---PHKFSSGSFAEGRIAAKAAVRYIL 432 (608)
T ss_pred ccccc-CCCCEEEeeecCCC----C---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 88888 89999999999752 1 134667788899999999887764
No 331
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=92.40 E-value=1 Score=43.69 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC----CeE---EEc-CCcEEecceEEEecCCC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS----QKL---ILN-DGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~----~~v---~~~-~g~~i~~D~vi~a~G~~ 187 (352)
..+.+.+.+.+++.|++++.+ +|+++.. +.+ ... ++.++.++.||+|+|-.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 456677777888899999998 7888642 223 333 33579999999999944
No 332
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.39 E-value=0.36 Score=38.69 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=48.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 161 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 161 (352)
.++++|+|+|-+|-.++..|...+. .+|+++.+. .+-.+.+.+.+....+++..- ...
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~-------------~~i~i~nRt-------~~ra~~l~~~~~~~~~~~~~~~~~~- 70 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGA-------------KEITIVNRT-------PERAEALAEEFGGVNIEAIPLEDLE- 70 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTS-------------SEEEEEESS-------HHHHHHHHHHHTGCSEEEEEGGGHC-
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEEECC-------HHHHHHHHHHcCccccceeeHHHHH-
Confidence 4699999999999999999998762 569999874 122333344443334443322 111
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
...-++|.||.||+....
T Consensus 71 ----------~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 71 ----------EALQEADIVINATPSGMP 88 (135)
T ss_dssp ----------HHHHTESEEEE-SSTTST
T ss_pred ----------HHHhhCCeEEEecCCCCc
Confidence 011348999999987644
No 333
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.39 E-value=0.27 Score=45.40 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=52.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEEC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 164 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~ 164 (352)
+|.|+|+|..|.-+|..|++.+ ..|+++.+.+ . .+.+++.|+.+....- ....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g--------------~~V~~~~R~~-----------~-~~~l~~~GL~i~~~~~-~~~~ 54 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG--------------HDVTLLVRSR-----------R-LEALKKKGLRIEDEGG-NFTT 54 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--------------CeEEEEecHH-----------H-HHHHHhCCeEEecCCC-cccc
Confidence 7999999999999999999876 6888887632 1 3567777887765511 1111
Q ss_pred CeEEEcC-CcEEecceEEEecCCCcc
Q 018671 165 QKLILND-GTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 165 ~~v~~~~-g~~i~~D~vi~a~G~~~~ 189 (352)
......+ ...-++|++|+++-....
T Consensus 55 ~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 55 PVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred ccccccChhhcCCCCEEEEEeccccH
Confidence 1111121 123479999999876654
No 334
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=92.39 E-value=2 Score=39.88 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.-.|+|||||-+|...|.-|.++.+. .+.+|.++++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd----------~gl~VvVVErd 122 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARD----------EGLNVVVVERD 122 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhc----------CCceEEEEecc
Confidence 35799999999999999999887632 23778888775
No 335
>PLN02576 protoporphyrinogen oxidase
Probab=92.27 E-value=0.18 Score=49.80 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=27.7
Q ss_pred CcEEEECCChHHHHHHHHHHHh-HhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||||.+|+-+|..|++. + .+|+++|+.
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g--------------~~v~vlEa~ 45 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHG--------------VNVLVTEAR 45 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcC--------------CCEEEEecC
Confidence 4899999999999999999876 5 678888875
No 336
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.05 E-value=0.28 Score=39.24 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
++|+|+|+|..|.++|..|+..+- .+++|++...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv-------------~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGV-------------GKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTT-------------SEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCC-------------CceeecCCcc
Confidence 499999999999999999999872 5899998863
No 337
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.02 E-value=0.19 Score=49.82 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
|+|||||..|+.+|..|++.+ .+|+++|+..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--------------~~V~VlE~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--------------IPVTVVEQRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--------------CcEEEEECCC
Confidence 689999999999999999877 8999999863
No 338
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=91.83 E-value=0.2 Score=49.46 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|+-+|..|++.+ .+|+++|+.
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G--------------~~v~vlE~~ 33 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRG--------------YRVTLLEQH 33 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence 7999999999999999999877 899999986
No 339
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=91.82 E-value=0.25 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.++|||||.+|+.+|..|++.+ .+|+++++.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G--------------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLN--------------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecC
Confidence 6899999999999999998765 789999875
No 340
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.74 E-value=0.48 Score=46.14 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=49.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++++|+|+|.+|..+|..|++.+ .+|++.+...... ....+.|.+.|+++..+ ....+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G--------------~~V~~~d~~~~~~-------~~~~~~l~~~g~~~~~~~~~~~~ 64 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG--------------ANVTVNDGKPFSE-------NPEAQELLEEGIKVICGSHPLEL 64 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC--------------CEEEEEcCCCccc-------hhHHHHHHhcCCEEEeCCCCHHH
Confidence 58999999999999999999877 8999987542110 11224466778887654 11111
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.. .+|.||..+|..+.
T Consensus 65 ------~~~----~~d~vV~s~gi~~~ 81 (447)
T PRK02472 65 ------LDE----DFDLMVKNPGIPYT 81 (447)
T ss_pred ------hcC----cCCEEEECCCCCCC
Confidence 000 37888888887765
No 341
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=91.63 E-value=0.2 Score=48.93 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+.+|..|.+.+ .+|+++|+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--------------~~v~vlE~~ 31 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--------------HTPIVLEAR 31 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 4899999999999999998876 778888865
No 342
>PLN02529 lysine-specific histone demethylase 1
Probab=91.50 E-value=0.27 Score=50.78 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=28.2
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+.++|+|||+|++|+.+|..|+..+ .+|+++|+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g--------------~~v~v~E~~ 192 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFG--------------FKVVVLEGR 192 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--------------CcEEEEecC
Confidence 4468999999999999999999876 667777663
No 343
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.44 E-value=0.66 Score=45.43 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=50.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++|.|+|.|.+|+.+|..|.+.+ .+|++.+..+.. ..+ ...+.|++.|+.+..+ .-.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~~~-~~~-----~~~~~l~~~gi~~~~~~~~~-- 72 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG--------------AKVTAFDKKSEE-ELG-----EVSNELKELGVKLVLGENYL-- 72 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC--------------CEEEEECCCCCc-cch-----HHHHHHHhCCCEEEeCCCCh--
Confidence 58999999999999999998877 899999875311 011 1123367788887654 100
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+ -.+|+||.++|..+.
T Consensus 73 --~~~-------~~~dlVV~Spgi~~~ 90 (458)
T PRK01710 73 --DKL-------DGFDVIFKTPSMRID 90 (458)
T ss_pred --HHh-------ccCCEEEECCCCCCC
Confidence 000 137888888888775
No 344
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=91.28 E-value=0.26 Score=49.73 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=59.9
Q ss_pred CcEEEECCCh--HHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC--------------CCcHHHHHHHHHH
Q 018671 84 LHCVVVGGGP--TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS--------------SFDDRLRHYATTQ 146 (352)
Q Consensus 84 ~~vvVvGgG~--~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~--------------~~~~~~~~~~~~~ 146 (352)
.++.|+|+|. .+.|++..+.... .+++++... .+++ .....+.+.+.+.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~ 223 (574)
T PRK12842 158 KTITFIGMMFNSSNADLKHFFNATR--------------SLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKS 223 (574)
T ss_pred ccccccceecccchHHHHHHHhhcc--------------chhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHH
Confidence 4788999988 7888888876544 233332221 1111 1235677778888
Q ss_pred HHhCCCEEEeC-ceEEEEC--C---eEEEcC--Cc-EEecc-eEEEecCCCcc
Q 018671 147 LSKSGVRLVRG-IVKDVDS--Q---KLILND--GT-EVPYG-LLVWSTGVGPS 189 (352)
Q Consensus 147 l~~~gV~v~~~-~V~~v~~--~---~v~~~~--g~-~i~~D-~vi~a~G~~~~ 189 (352)
+++.||+++.+ .|+++.. + +|+..+ ++ ++.++ .||+|+|..++
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 88999999999 7877653 3 344433 33 47775 79999997763
No 345
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.25 E-value=0.6 Score=42.83 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=47.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEEC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 164 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~ 164 (352)
+|+|+|+|..|.-+|..|++.+ .+|+++.+. +. .+.+++.|+.+....-....+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g--------------~~V~~~~r~-------~~-----~~~~~~~g~~~~~~~~~~~~~ 55 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG--------------RDVTFLVRP-------KR-----AKALRERGLVIRSDHGDAVVP 55 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CceEEEecH-------HH-----HHHHHhCCeEEEeCCCeEEec
Confidence 6999999999999999999865 789998741 11 133556677654331011111
Q ss_pred CeEEEcCCcE--EecceEEEecCCCcc
Q 018671 165 QKLILNDGTE--VPYGLLVWSTGVGPS 189 (352)
Q Consensus 165 ~~v~~~~g~~--i~~D~vi~a~G~~~~ 189 (352)
..+ ..+.++ -++|.+|+|+.....
T Consensus 56 ~~~-~~~~~~~~~~~d~vilavk~~~~ 81 (305)
T PRK12921 56 GPV-ITDPEELTGPFDLVILAVKAYQL 81 (305)
T ss_pred cee-ecCHHHccCCCCEEEEEecccCH
Confidence 111 122222 358999999876543
No 346
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.05 E-value=0.8 Score=44.62 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=51.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHh--CCCEEEeCceEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRGIVKD 161 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~~V~~ 161 (352)
++++|+|.|.+|+.+|..|++.+ .+|++.+..+..+ . .+.|++ .||.+..+.-..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g--------------~~v~~~d~~~~~~----~-----~~~l~~~~~gi~~~~g~~~~ 62 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG--------------AEVAAYDAELKPE----R-----VAQIGKMFDGLVFYTGRLKD 62 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCCCch----h-----HHHHhhccCCcEEEeCCCCH
Confidence 58999999999999999998877 8899988653221 1 122444 477766542000
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc-hhh
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 192 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~-~~~ 192 (352)
. ..-.+|+||.++|..|. +.+
T Consensus 63 ----~------~~~~~d~vv~spgi~~~~p~~ 84 (445)
T PRK04308 63 ----A------LDNGFDILALSPGISERQPDI 84 (445)
T ss_pred ----H------HHhCCCEEEECCCCCCCCHHH
Confidence 0 01248999999999986 544
No 347
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.98 E-value=0.39 Score=45.24 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=36.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC--C-------CCCCCcHHHHHHHHHH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-------ILSSFDDRLRHYATTQ 146 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~-------~l~~~~~~~~~~~~~~ 146 (352)
+|.|+|.|+.|+-.|..+++.+ .+|+.++-. + ..|-+.|.+.+.+.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~G--------------HeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~ 58 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELG--------------HEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN 58 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcC--------------CeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc
Confidence 7999999999999999999998 899999764 2 1355556665554443
No 348
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=90.93 E-value=0.29 Score=47.07 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=26.0
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G--------------~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAG--------------AKVLLVEKG 31 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTT--------------T-EEEEESS
T ss_pred EEEECCCHHHHHHHHHHhhhc--------------CeEEEEEee
Confidence 899999999999999999987 799999886
No 349
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.92 E-value=0.27 Score=48.46 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 128 (352)
.|+|||||.+|+.+|.+|+++. ++.+|+++|+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~------------~g~~V~VlEk 33 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELE------------PNWSITLIER 33 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhC------------CCCeEEEEEc
Confidence 5899999999999999999862 2278888887
No 350
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.85 E-value=0.2 Score=49.35 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
..|+|||||.+|+-+|..++.++ .+|.|+|+.++-
T Consensus 13 ~DviVIGGGitG~GiArDaA~RG--------------l~v~LvE~~D~A 47 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAGRG--------------LKVALVEKGDLA 47 (532)
T ss_pred CCEEEECCchhhHHHHHHHHhCC--------------CeEEEEecCccc
Confidence 38999999999999999999988 999999988664
No 351
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.85 E-value=0.29 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||||.+|+.+|.+|+++. +..+|+++|+.
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~------------~g~~V~VlEk~ 39 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELE------------PEWSITMFERL 39 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhC------------CCCeEEEEEcC
Confidence 7999999999999999998853 22689999864
No 352
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.67 E-value=0.68 Score=45.35 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=50.2
Q ss_pred CCcEEEECCChHHHH-HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEE
Q 018671 83 LLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 161 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e-~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~ 161 (352)
.++|.|+|-|-+|+. +|..|.+.+ .+|+..+.... +. . +.|++.|+++..+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G--------------~~V~~~D~~~~-----~~----~-~~l~~~gi~~~~~~--- 59 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG--------------YKVSGSDLKES-----AV----T-QRLLELGAIIFIGH--- 59 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC--------------CeEEEECCCCC-----hH----H-HHHHHCCCEEeCCC---
Confidence 358999999999999 799998877 89999886532 11 1 23677788876431
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
..+.+ -.+|+||.++|..+.
T Consensus 60 -~~~~~-------~~~d~vv~spgi~~~ 79 (461)
T PRK00421 60 -DAENI-------KDADVVVYSSAIPDD 79 (461)
T ss_pred -CHHHC-------CCCCEEEECCCCCCC
Confidence 00111 137899999999876
No 353
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=90.63 E-value=0.25 Score=45.09 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
.++|||+|+.|+-+|..|++.. +.+|.|+|++...
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~-------------~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAG-------------NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTST-------------TS-EEEEESSBSC
T ss_pred CEEEECcCHHHHHHHHHHhhCC-------------CCcEEEEEccccC
Confidence 4799999999999999998753 2699999998433
No 354
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=90.63 E-value=1.6 Score=40.07 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHhCCCEEEeC-ceEEEECC-------eEEEc--CCcEEecceEEEecCCCcchhhhhcCCCCCC
Q 018671 145 TQLSKSGVRLVRG-IVKDVDSQ-------KLILN--DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 201 (352)
Q Consensus 145 ~~l~~~gV~v~~~-~V~~v~~~-------~v~~~--~g~~i~~D~vi~a~G~~~~~~~~~~~l~~~~ 201 (352)
+.++..|=.+.++ +++.+..+ -++.. .++++.+..++-|+|.......+.++++.|+
T Consensus 204 edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dP 270 (453)
T KOG2665|consen 204 EDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDP 270 (453)
T ss_pred HHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCC
Confidence 3355666666777 66666543 13332 3578999999999999887777777777665
No 355
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=90.32 E-value=0.34 Score=47.48 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-+|..+++.+ .+|+|+|+.
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G--------------~~V~vlEk~ 36 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAG--------------ASVLLLEAA 36 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 7999999999999999999876 788888764
No 356
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.28 E-value=0.38 Score=47.55 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..|+|||||.+|+.+|.+|+++. +..+|+++|+.
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~------------~~~~V~VlEk~ 79 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFT------------NLKKIALIERR 79 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhC------------CCCEEEEEecC
Confidence 38999999999999999999863 12589999875
No 357
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=90.15 E-value=0.38 Score=47.32 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||||.+|+.+|..|++.+ .+|+++|+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--------------~~v~v~E~~ 31 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--------------HEVDIYESR 31 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEec
Confidence 4799999999999999998876 789999886
No 358
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.06 E-value=0.46 Score=39.16 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=47.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEEC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 164 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~ 164 (352)
+|+|+|+|..|.-+|..|++.+ .+|+|..+.+ +..+. +++.+.+...-.-..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--------------~~V~l~~~~~-------~~~~~----i~~~~~n~~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--------------HEVTLWGRDE-------EQIEE----INETRQNPKYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--------------EEEEEETSCH-------HHHHH----HHHHTSETTTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CEEEEEeccH-------HHHHH----HHHhCCCCCCCCCcccCc
Confidence 5899999999999999999876 8999997632 22222 332222111000001111
Q ss_pred CeEEE-cCC-cEE-ecceEEEecCCCcch-hhhhc
Q 018671 165 QKLIL-NDG-TEV-PYGLLVWSTGVGPST-LVKSL 195 (352)
Q Consensus 165 ~~v~~-~~g-~~i-~~D~vi~a~G~~~~~-~~~~~ 195 (352)
.+.. +|- +.+ .+|.+|+++...... +++.+
T Consensus 56 -~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l 89 (157)
T PF01210_consen 56 -NIKATTDLEEALEDADIIIIAVPSQAHREVLEQL 89 (157)
T ss_dssp -TEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHH
T ss_pred -ccccccCHHHHhCcccEEEecccHHHHHHHHHHH
Confidence 1222 221 122 389999999887763 55554
No 359
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=90.03 E-value=0.49 Score=45.56 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=29.3
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI 131 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~ 131 (352)
...+|||||+|.+|+..|..|.+.+ ..++++++.. ++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-------------f~~~~IlEa~dRI 57 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-------------FIDVLILEASDRI 57 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-------------CceEEEEEecccc
Confidence 3458999999999999999998654 2677888775 55
No 360
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=90.03 E-value=1.7 Score=42.31 Aligned_cols=86 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCC---------------------------------
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------------------------------- 131 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--------------------------------- 131 (352)
.|+|||+|..|+.+|..|... .+|+++.+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---------------~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG 73 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---------------FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAG 73 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---------------CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhc
Q ss_pred ------------------------------------------------------CCCCcHHHHHHHHHHHHh-CCCEEEe
Q 018671 132 ------------------------------------------------------LSSFDDRLRHYATTQLSK-SGVRLVR 156 (352)
Q Consensus 132 ------------------------------------------------------l~~~~~~~~~~~~~~l~~-~gV~v~~ 156 (352)
-...+..+...+.+..++ .+|+++.
T Consensus 74 ~glcD~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e 153 (518)
T COG0029 74 AGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLE 153 (518)
T ss_pred CCCCcHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEe
Q ss_pred C-ceEEEECC------eEEEcCC----cEEecceEEEecC
Q 018671 157 G-IVKDVDSQ------KLILNDG----TEVPYGLLVWSTG 185 (352)
Q Consensus 157 ~-~V~~v~~~------~v~~~~g----~~i~~D~vi~a~G 185 (352)
+ .+.++-.+ ++.+.+. .++.++.||+|||
T Consensus 154 ~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 154 GAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred cchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecC
No 361
>PLN02487 zeta-carotene desaturase
Probab=89.71 E-value=0.42 Score=48.03 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.++|+|||+|.+|+.+|..|++.+ .+|+++|+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g--------------~~v~i~E~~ 107 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQG--------------HEVDIYESR 107 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--------------CeeEEEecC
Confidence 359999999999999999999876 789999875
No 362
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.70 E-value=0.54 Score=47.53 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.|+ ..|++||+|||+... ..|...+. .....|.-.|++++++++..++
T Consensus 358 ~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 358 MGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 477999999997 899999999997421 11222221 2345677889999998877654
No 363
>PLN03000 amine oxidase
Probab=89.69 E-value=0.73 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhH
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
..+|+|||+|.+|+.+|..|.+.+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G 207 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFG 207 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC
Confidence 468999999999999999998865
No 364
>PRK08275 putative oxidoreductase; Provisional
Probab=89.65 E-value=0.44 Score=47.91 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=37.7
Q ss_pred CccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 203 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 203 G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
|.|.||.+++| +.|++||+|||+... ......|...|+.++.++...++
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~--------~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASVP--------HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCch--------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999998 999999999987421 23344578888998888776654
No 365
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=89.62 E-value=0.5 Score=49.25 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=28.2
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..++|+|||||.+|+.+|..|++.+ .+|++++..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--------------~~v~v~E~~ 270 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--------------FKVVVLEGR 270 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 3468999999999999999998866 667777664
No 366
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.60 E-value=0.63 Score=39.54 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=44.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-C--------CCCCCcHHHHHHHHHHHHhCCCEEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--------ILSSFDDRLRHYATTQLSKSGVRLV 155 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~--------~l~~~~~~~~~~~~~~l~~~gV~v~ 155 (352)
+|.|+|.|+.|+-+|..+++.+ .+|+.++.. . .+|...+.+.+.+.+.++..+..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G--------------~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t 67 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKG--------------HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT 67 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTT--------------SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE
T ss_pred EEEEECCCcchHHHHHHHHhCC--------------CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh
Confidence 7999999999999999999987 899999875 2 1344455666666665554443322
Q ss_pred eCceEEEECCeEEEcCCcE--EecceEEEecCCC
Q 018671 156 RGIVKDVDSQKLILNDGTE--VPYGLLVWSTGVG 187 (352)
Q Consensus 156 ~~~V~~v~~~~v~~~~g~~--i~~D~vi~a~G~~ 187 (352)
. |.+. -.+|.+++|.+.-
T Consensus 68 ~--------------~~~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 68 T--------------DIEEAIKDADVVFICVPTP 87 (185)
T ss_dssp S--------------EHHHHHHH-SEEEE----E
T ss_pred h--------------hhhhhhhccceEEEecCCC
Confidence 2 1112 3589999998753
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.55 E-value=0.39 Score=43.90 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--------------~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--------------VDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence 48999999999999999998876 899999976
No 368
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=89.41 E-value=0.93 Score=43.08 Aligned_cols=57 Identities=12% Similarity=0.196 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce--EEEcCCcEEecceEEEecCCCcchhhh
Q 018671 136 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 193 (352)
Q Consensus 136 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~~~~~~~ 193 (352)
+..+...+.+.+++ |++++.+ +|.+++. +. |.+.+|+.+.+|.||+|+|.....+..
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~ 195 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQ 195 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccc
Confidence 35677777788888 9999998 7888864 33 556778779999999999987654433
No 369
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=89.20 E-value=0.43 Score=44.20 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
.+|+|||+|.+|+.+|-.|+++ .+|||+|..+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r---------------hdVTLfEA~~ 40 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR---------------HDVTLFEADR 40 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc---------------cceEEEeccc
Confidence 4899999999999999999875 7999999873
No 370
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.98 E-value=1.5 Score=43.10 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=48.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++|+|+|.|-+|+.+|..|.+.+ .+|++.+... .. ..+.+.+.||++..+ .-.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G--------------~~V~~~D~~~------~~----~~~~l~~~gi~~~~~~~~~-- 69 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG--------------CDVVVADDNE------TA----RHKLIEVTGVADISTAEAS-- 69 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--------------CEEEEECCCh------HH----HHHHHHhcCcEEEeCCCch--
Confidence 58999999999999999998776 7888887531 01 122345568887654 110
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
+.+ -.+|+||.++|..+.
T Consensus 70 --~~~-------~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 70 --DQL-------DSFSLVVTSPGWRPD 87 (473)
T ss_pred --hHh-------cCCCEEEeCCCCCCC
Confidence 001 147899999999886
No 371
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=88.90 E-value=0.48 Score=46.82 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|..|+.+|..|++.+ .+|+++|++
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G--------------~~V~vlE~~ 32 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKG--------------AKVLVLERY 32 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence 5899999999999999999877 778888775
No 372
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.79 E-value=0.72 Score=42.77 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=28.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++++|+|||+|.+|..+|..|....- ..++.|++..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~------------~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI------------ADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC------------CCEEEEEeCC
Confidence 34699999999999999998876541 1489999875
No 373
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.75 E-value=0.5 Score=50.33 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=38.7
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.+| +.|++||+|||+... ......|.-.|+.++.++...+.
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 478999999998 899999999998531 23444577888888888876543
No 374
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=88.75 E-value=0.49 Score=46.70 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCCEEEeC-ceEEEECC---e--EEE---cCCc--EEecceEEEecCCCcchhhhhcCCC
Q 018671 150 SGVRLVRG-IVKDVDSQ---K--LIL---NDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 198 (352)
Q Consensus 150 ~gV~v~~~-~V~~v~~~---~--v~~---~~g~--~i~~D~vi~a~G~~~~~~~~~~~l~ 198 (352)
.|++++.+ +|.+++.+ . +.+ .+++ ++.+|.||+|+|.....+.+.++++
T Consensus 198 ~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 198 PNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred CCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 37888887 78777532 2 332 2342 6899999999999888787777654
No 375
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=88.74 E-value=1.3 Score=40.84 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce---EEEcCCcEEecceEEEecCCCcchh
Q 018671 136 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTL 191 (352)
Q Consensus 136 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~~~~~ 191 (352)
+..+...+.+.+.+.|++++.+ +|+++.. +. |.+.+| ++.+|.||+|+|.....+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhc
Confidence 4678888888899999999998 7988864 33 344455 799999999999766544
No 376
>PRK07121 hypothetical protein; Validated
Probab=88.69 E-value=0.53 Score=46.51 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|..+++.+ .+|+|++..
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G--------------~~VillEK~ 52 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAG--------------ARVLVLERA 52 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 7999999999999999999876 788888864
No 377
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.55 E-value=2.1 Score=39.91 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=48.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-c-eEEE
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-I-VKDV 162 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~-V~~v 162 (352)
+|.|||+|..|.-+|..|++.+ .+|+++++. + . .+.+++.|+.+... . -...
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G--------------~~V~~~~r~-------~----~-~~~~~~~g~~~~~~~~~~~~~ 57 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG--------------ADVTLIGRA-------R----I-GDELRAHGLTLTDYRGRDVRV 57 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC--------------CcEEEEecH-------H----H-HHHHHhcCceeecCCCcceec
Confidence 7999999999999999998876 789999752 1 1 24456667766432 1 1111
Q ss_pred ECCeEEEcC-Cc-EEecceEEEecCCCc
Q 018671 163 DSQKLILND-GT-EVPYGLLVWSTGVGP 188 (352)
Q Consensus 163 ~~~~v~~~~-g~-~i~~D~vi~a~G~~~ 188 (352)
..+.+...+ -+ .-.+|.||+|+....
T Consensus 58 ~~~~~~~~~~~~~~~~~D~vil~vk~~~ 85 (341)
T PRK08229 58 PPSAIAFSTDPAALATADLVLVTVKSAA 85 (341)
T ss_pred ccceeEeccChhhccCCCEEEEEecCcc
Confidence 112222221 11 236899999986544
No 378
>PRK02106 choline dehydrogenase; Validated
Probab=88.30 E-value=0.53 Score=47.38 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=19.2
Q ss_pred cEEEECCChHHHHHHHHHHH
Q 018671 85 HCVVVGGGPTGVEFSGELSD 104 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~ 104 (352)
.++|||+|.+|+-+|..|++
T Consensus 7 D~iIVG~G~aG~vvA~rLae 26 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSE 26 (560)
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 79999999999999999998
No 379
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.22 E-value=1.7 Score=42.88 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=50.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
.++|+|+|.|.+|+.++..|...+ .+|++.+... .. . +.+++.|+.+..+.-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G--------------~~v~~~D~~~------~~----~-~~l~~~g~~~~~~~~--- 63 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG--------------ARPTVCDDDP------DA----L-RPHAERGVATVSTSD--- 63 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--------------CEEEEEcCCH------HH----H-HHHHhCCCEEEcCcc---
Confidence 368999999999999998888766 8899887431 11 1 235667887654310
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc-hhh
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 192 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~-~~~ 192 (352)
..+.+ -.+|+||.++|..+. +.+
T Consensus 64 ~~~~l-------~~~D~VV~SpGi~~~~p~~ 87 (488)
T PRK03369 64 AVQQI-------ADYALVVTSPGFRPTAPVL 87 (488)
T ss_pred hHhHh-------hcCCEEEECCCCCCCCHHH
Confidence 00000 137999999999876 443
No 380
>PLN02676 polyamine oxidase
Probab=88.02 E-value=0.65 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHhH
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
..+|+|||||.+|+-+|..|++.+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g 49 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAG 49 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999999875
No 381
>PLN02612 phytoene desaturase
Probab=87.88 E-value=0.84 Score=46.00 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.4
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..++|+|||+|.+|+.+|..|++.+ .+|+++|+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g--------------~~~~~~e~~ 125 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAG--------------HKPILLEAR 125 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecC
Confidence 3468999999999999999998876 778888875
No 382
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=87.76 E-value=0.51 Score=45.22 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=37.3
Q ss_pred ccccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHH
Q 018671 204 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 204 ~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~ 258 (352)
++.+|+.+.+ +.+++|++||+|.+ ......|...|-.+|+.|...
T Consensus 438 ri~~d~~~~t-~i~gLy~aGdGAG~---------argI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 438 RIKVDEDLST-SIKGLYPAGDGAGL---------ARGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred eEeeccccee-eecceEEccccccc---------cchhHHHhhhhHHHHHHHHHH
Confidence 6888888666 99999999999975 556778889999999988653
No 383
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=87.73 E-value=0.84 Score=43.79 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||+|.+|+-.|.+|.+.+ .+|+++|..
T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG--------------~~v~ilEar 39 (450)
T COG1231 8 ADVIIVGAGLAGLSAAYELKKAG--------------YQVQILEAR 39 (450)
T ss_pred CcEEEECCchHHHHHHHHHhhcC--------------cEEEEEecc
Confidence 48999999999999999999877 788888875
No 384
>PRK07804 L-aspartate oxidase; Provisional
Probab=87.71 E-value=0.72 Score=46.20 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=34.7
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHH
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~ 258 (352)
.|.|.||++.++ +.|++||+|||+.. ...|...+. .....+.-.|+.+++++...
T Consensus 357 ~GGi~vd~~~~t-~i~GLyAaGe~~~~-g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 357 CGGVVTDVYGRT-SVPGLYAAGEVACT-GVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CCCEEECCCCcc-cCCCeEEccccccc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 477999999997 89999999998731 111211111 12234556677777776554
No 385
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=87.62 E-value=1.9 Score=42.65 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEcCCcEEecceEEEecCCC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 187 (352)
..+.+.+.+.+++.|++++.+ +|++|.. + .|.+.+|+++.+|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 467788888899999999999 7988753 2 5677889899999999998853
No 386
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.60 E-value=1.1 Score=45.28 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.++++.|++||+|+|+... ..|...+. .....|.-.|+.+++++...++
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVS-VHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccC-CCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4779999888874599999999997410 11222222 2345678889999998876653
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.49 E-value=0.91 Score=39.11 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..+|+|||+|-.|.++|..|+..+- .++++++..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGI-------------GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence 3589999999999999999998771 378998876
No 388
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=87.17 E-value=0.99 Score=45.12 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
++++|||||.+|+..|..|.+.++ -++.+|+|+|+..
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~----------~~G~~VtIlEk~~ 59 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQ----------MPGENITILEELD 59 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccC----------CCCCcEEEEeCCC
Confidence 589999999999999999987531 0237899998763
No 389
>PRK08071 L-aspartate oxidase; Provisional
Probab=87.14 E-value=0.89 Score=45.20 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHH
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~ 258 (352)
.|.|.||.+.|+ +.|++||+|+|+.. ...|...+. .....|.-.|+.+++++...
T Consensus 332 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 332 MGGVKTNLDGET-SIPGLYAIGEVACT-GVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cCCEEECCCCcc-cCCCeEEccccccc-ccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 367999999997 89999999999741 111221122 23355677788888887543
No 390
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.10 E-value=2.9 Score=32.10 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEECC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ 165 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~~~ 165 (352)
|+|+|.|..|.+++..|.+.. .+|++++.. ++. .+.+.+.|++++.+...+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--------------~~vvvid~d-------~~~----~~~~~~~~~~~i~gd~~~---- 51 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--------------IDVVVIDRD-------PER----VEELREEGVEVIYGDATD---- 51 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--------------SEEEEEESS-------HHH----HHHHHHTTSEEEES-TTS----
T ss_pred eEEEcCCHHHHHHHHHHHhCC--------------CEEEEEECC-------cHH----HHHHHhcccccccccchh----
Confidence 689999999999999998843 699999863 222 355667778776652110
Q ss_pred eEEEcCCcEEecceEEEecCCCc
Q 018671 166 KLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 166 ~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
.-.+..-..-.++.++.+++...
T Consensus 52 ~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 52 PEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp HHHHHHTTGGCESEEEEESSSHH
T ss_pred hhHHhhcCccccCEEEEccCCHH
Confidence 00011101135788888887443
No 391
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=87.09 E-value=0.81 Score=46.21 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+..|..+++.+ .+|+|+++.
T Consensus 11 DVvVVG~G~aGl~AA~~aa~~G--------------~~v~llEk~ 41 (574)
T PRK12842 11 DVLVIGSGAGGLSAAITARKLG--------------LDVVVLEKE 41 (574)
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CeEEEEecC
Confidence 7999999999999999999876 789999875
No 392
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.93 E-value=1.3 Score=45.84 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+.-++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~ 345 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKG--------------TPIVMKDIN 345 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 45578999999999999999999877 999999986
No 393
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=86.89 E-value=1 Score=44.43 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHH
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~ 258 (352)
.|.|.||.+.|+ ..|++||+|+|+.. ...|...+. .....|.-.|+.+++++...
T Consensus 333 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 333 CGGISVDDHGRT-TVPGLYAIGEVACT-GLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCEEECCCCcc-cCCCEEECcccccc-ccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 477999999997 89999999999731 111222222 23356778888888887654
No 394
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.80 E-value=1.4 Score=39.25 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..+|+|||+|.+|++++..|+..+-. ....+. +.+.++++++..
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a--~~~~G~-~~g~~i~lvD~D 54 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHA--LKALGH-PGGLAVTVYDDD 54 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHcccc--ccccCC-CCCCEEEEECCC
Confidence 35999999999999999999986410 000000 012489999875
No 395
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.63 E-value=1.5 Score=45.46 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.-++|.|||+|..|..+|..++..+ .+|+|++..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G--------------~~V~l~d~~ 345 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKG--------------VPVIMKDIN 345 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 4568999999999999999999876 899999976
No 396
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=86.58 E-value=1.1 Score=41.06 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l 132 (352)
.++|||+|.+|.-+|..+++++ .+|.+|++. .+.
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~g--------------k~VLIvekR~HIG 37 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLG--------------KRVLIVEKRNHIG 37 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcC--------------CEEEEEeccccCC
Confidence 6899999999999999888877 788888875 443
No 397
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.45 E-value=2.6 Score=40.38 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce---EEEcCCcEEecceEEEecCCCcchhhhhcC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 196 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~ 196 (352)
..+...+.+.+++.|++++.+ +|++++. +. |.+. +.++.+|.||+|+|.....+....+
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 456667778888899999988 7988864 33 3334 4479999999999987766555443
No 398
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=86.44 E-value=2.3 Score=42.02 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C-e--EEE---cCC--cEEecceEEEecCCCcchhhhhcCCC
Q 018671 136 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 198 (352)
Q Consensus 136 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~-~--v~~---~~g--~~i~~D~vi~a~G~~~~~~~~~~~l~ 198 (352)
+..+...+.+.++++|++++.+ +|++++. + . +.+ .+| .++.+|.||+|+|.....+.+.++++
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3567777888888899999999 8998864 2 2 332 223 36899999999999887777777765
No 399
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=86.37 E-value=1.3 Score=44.82 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~ 259 (352)
.|.+.+|.+.++ +.|++||+|+|+.. ...|...+. .....|.-.|+.++++++...
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~-G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASV-GLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeeccccc-CcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 467999999997 89999999999742 111222222 234567888999999887654
No 400
>PLN02612 phytoene desaturase
Probab=86.25 E-value=2.4 Score=42.71 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--Ce----EEEcCCcEEecceEEEecCC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGTEVPYGLLVWSTGV 186 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~----v~~~~g~~i~~D~vi~a~G~ 186 (352)
..+.+.+.+.|++.|.+|+++ +|++|+. ++ +.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999 8999863 33 66678989999999999753
No 401
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.21 E-value=1.5 Score=42.98 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
.++|+|||||..|..=+..|.+.+ .+|+++.+ .+.+++. +......|+++.....
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~g--------------a~v~visp-----~~~~~~~----~l~~~~~i~~~~~~~~-- 66 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAG--------------ARLTVNAL-----AFIPQFT----AWADAGMLTLVEGPFD-- 66 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEcC-----CCCHHHH----HHHhCCCEEEEeCCCC--
Confidence 369999999999998888887766 89999964 3344443 2223345665544211
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
.+..-.+++||.||+-..
T Consensus 67 --------~~dl~~~~lv~~at~d~~ 84 (457)
T PRK10637 67 --------ESLLDTCWLAIAATDDDA 84 (457)
T ss_pred --------hHHhCCCEEEEECCCCHH
Confidence 111123788888887643
No 402
>PRK09077 L-aspartate oxidase; Provisional
Probab=86.19 E-value=1.2 Score=44.70 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=38.6
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~ 259 (352)
.|.|.||.+.|+ +.|++||+|+|+.. ...|...+. .....|.-.|+.+++++....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cCCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 467999999997 89999999999731 111221111 234567788999999887643
No 403
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=86.18 E-value=0.8 Score=45.53 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=26.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+| +|+-+|.++++.+ .+|+|+++.
T Consensus 9 DVvVVG~G-aGl~aA~~aa~~G--------------~~V~vlEk~ 38 (513)
T PRK12837 9 DVLVAGSG-GGVAGAYTAAREG--------------LSVALVEAT 38 (513)
T ss_pred CEEEECch-HHHHHHHHHHHCC--------------CcEEEEecC
Confidence 79999999 9999999999876 788888754
No 404
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.08 E-value=1.2 Score=38.32 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv-------------~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGV-------------GTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEecCC
Confidence 599999999999999999998872 489999876
No 405
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.96 E-value=0.96 Score=41.26 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|+|||+|..|..+|..++..+ .+|++++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G--------------~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG--------------FDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence 38999999999999999998765 799999875
No 406
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.93 E-value=2.7 Score=41.27 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKD 161 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~ 161 (352)
.++|+|+|.|-+|..+|..|.+.+ .+|++.+...... .+. . +.|++ ++....+ .-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g--------------~~v~~~d~~~~~~--~~~----~-~~l~~-~~~~~~~~~~-- 63 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL--------------PAQALTLFCNAVE--ARE----V-GALAD-AALLVETEAS-- 63 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC--------------CEEEEEcCCCccc--chH----H-HHHhh-cCEEEeCCCC--
Confidence 358999999999999999999877 8999988653211 111 1 12444 3333322 10
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc-hhh
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 192 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~-~~~ 192 (352)
.+. .-.+|+||..+|..+. +.+
T Consensus 64 --~~~-------~~~~d~vV~SpgI~~~~p~~ 86 (468)
T PRK04690 64 --AQR-------LAAFDVVVKSPGISPYRPEA 86 (468)
T ss_pred --hHH-------ccCCCEEEECCCCCCCCHHH
Confidence 000 1138999999999886 433
No 407
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.88 E-value=1.3 Score=38.89 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gv-------------g~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGV-------------GKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 599999999999999999998872 588888775
No 408
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.81 E-value=1.4 Score=35.47 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-------------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-------------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-------------CEEEEEcCC
Confidence 58999999999999999998772 489999875
No 409
>PLN02568 polyamine oxidase
Probab=85.75 E-value=1.2 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||+|.+|+.+|..|++.+.. .+..+|+|+|+.
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g~~---------~~~~~v~v~E~~ 42 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSSAA---------NDMFELTVVEGG 42 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcccc---------cCCceEEEEeCC
Confidence 4899999999999999999875410 112678888775
No 410
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.73 E-value=1.8 Score=37.11 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
.+|+|+|.|..|+|+|..|+..+- .++++++...
T Consensus 22 s~VlIiG~gglG~evak~La~~GV-------------g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGI-------------GSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-------------CEEEEEECCc
Confidence 499999999999999999998872 5799998763
No 411
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=85.69 E-value=2.7 Score=41.61 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHh----CC--CEEEeC-ceEEEECC-----eEEEcCCcEEecceEEEecCCCcchhhhhcCCC
Q 018671 137 DRLRHYATTQLSK----SG--VRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 198 (352)
Q Consensus 137 ~~~~~~~~~~l~~----~g--V~v~~~-~V~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~~~~~~~~~~l~ 198 (352)
..+...+.+.+++ .| ++++.+ +|++++.+ .|.+++| ++.+|.||+|+|.-...+.+.+++.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 3566777777888 77 888888 79988753 3555566 6999999999998888788777764
No 412
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=85.64 E-value=3.3 Score=36.13 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=48.1
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCC-CCCcHHHHHHHHHHHHhCCCEEEeCce
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SSFDDRLRHYATTQLSKSGVRLVRGIV 159 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~V 159 (352)
++++|+|.|-|..|..+|..|.+.+ ...|.+.+.. .+. |.++ ..+.+....+..++..... .
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-------------~~vV~vsD~~g~i~~~Gld--~~~l~~~~~~~~~~~~~~~-~ 85 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-------------GKVLAVSDPDGYIYDPGIT--TEELINYAVALGGSARVKV-Q 85 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-------------CEEEEEEcCCCcEECCCCC--HHHHHHHHHhhCCccccCc-c
Confidence 3469999999999999999999875 1355556654 232 3333 3333333333334432211 1
Q ss_pred EEEECCeEEEcCCcEEecceEEEecCCC
Q 018671 160 KDVDSQKLILNDGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 160 ~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 187 (352)
+.++++.+. .++||.++.|+...
T Consensus 86 ~~~~~~~l~-----~~~~DVlipaA~~~ 108 (217)
T cd05211 86 DYFPGEAIL-----GLDVDIFAPCALGN 108 (217)
T ss_pred cccCcccce-----eccccEEeeccccC
Confidence 112222222 35799998887643
No 413
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.19 E-value=1 Score=45.73 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 14 DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~vleK~ 44 (591)
T PRK07057 14 DVVIVGAGGSGMRASLQLARAG--------------LSVAVLSKV 44 (591)
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEecc
Confidence 7999999999999999998765 688888774
No 414
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.05 E-value=0.96 Score=46.16 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-+|..+++.+ .+|+|++..
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G--------------~~V~lieK~ 40 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERG--------------LRVAVVCKS 40 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecc
Confidence 7999999999999999998876 678887764
No 415
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=85.01 E-value=0.82 Score=46.43 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.2
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--------------~~VilleK~ 30 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--------------YHVKLFSYV 30 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--------------CCEEEEEec
Confidence 689999999999999998866 677777654
No 416
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.99 E-value=1.5 Score=43.90 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.+.||+..|+ ..|++||+|+|+.-.+ |...+. .....|.-.|+++++++...+.
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~h--G~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVH--GANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCC--CCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 367999999997 8999999999874211 222211 2334688889999998877653
No 417
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.96 E-value=1 Score=45.79 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+..|.++++.+ .+|+|++..
T Consensus 14 DVvVIG~G~AGl~AAl~Aa~~G--------------~~V~lveK~ 44 (598)
T PRK09078 14 DVVVVGAGGAGLRATLGMAEAG--------------LKTACITKV 44 (598)
T ss_pred CEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 7999999999999999998865 677777654
No 418
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=84.88 E-value=1.1 Score=45.26 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
.|+|||+|.+|+..|..+++.+ .+|+|++...
T Consensus 13 DVvVVG~G~AGl~AA~~aae~G--------------~~VivlEk~~ 44 (584)
T PRK12835 13 DVLVVGSGGGGMTAALTAAARG--------------LDTLVVEKSA 44 (584)
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcCC
Confidence 7999999999999999998876 8899998753
No 419
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=84.83 E-value=1.1 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 132 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l 132 (352)
.|+|||+|.+|+-+|+.|+..+ ++|.++|+++..
T Consensus 6 DViViGtGL~e~ilAa~Ls~~G--------------kkVLhlD~n~~y 39 (443)
T PTZ00363 6 DVIVCGTGLKECILSGLLSVNG--------------KKVLHMDRNPYY 39 (443)
T ss_pred eEEEECCChHHHHHHhhhhhCC--------------CEEEEecCCCCc
Confidence 6999999999999999999877 899999997543
No 420
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.83 E-value=1 Score=41.81 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG--------------~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG--------------LDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCC
Confidence 58999999999999999999877 999999975
No 421
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=84.79 E-value=1.5 Score=44.13 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCccccCCccc----cCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLR----VPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~----~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.+.||...| + ..|++||+|+|+.. ...|...+. .....|+-.|+.+++++...++
T Consensus 342 ~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~-g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 342 MGGIPTDYTGRVICET-IVKGLFAAGECACV-SVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred CCCeEECcCcccccCc-ccCCeeeccccccc-CcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 46788888887 5 89999999998741 111222222 3445788889999998876653
No 422
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.78 E-value=1.6 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
.++|+|||+|..|.++|..|+..+- .+++|++...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-------------g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-------------GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCCc
Confidence 3589999999999999999999871 4899998863
No 423
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=84.77 E-value=1.8 Score=44.46 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.3
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCC-CCchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~-~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.++...|++||+|+|+.. ...|...+ ..+...|.-.|++++++++..+.
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACW-DMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred cCCceECCCCCCcccCCEEeccccccc-CCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 367999998888559999999999752 11122111 12235677888999988876553
No 424
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=84.74 E-value=1.3 Score=42.81 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
+|+|||+|..|+|++..|+..+-. ..+..++++++...
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~--------~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVG--------TGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--------cCCCCeEEEECCCC
Confidence 589999999999999999987710 01124899998753
No 425
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.69 E-value=2.3 Score=36.57 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||.|..|.|+|..|+..+- .++++++..
T Consensus 20 s~VlviG~gglGsevak~L~~~GV-------------g~i~lvD~d 52 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGI-------------DSITIVDHR 52 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEECC
Confidence 499999999999999999998872 579999875
No 426
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=84.59 E-value=1.2 Score=43.18 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+.+|..+++.+ .+|++++.+
T Consensus 4 DviIIG~G~aGl~aA~~la~~g--------------~~v~vi~~~ 34 (422)
T PRK05329 4 DVLVIGGGLAGLTAALAAAEAG--------------KRVALVAKG 34 (422)
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEECC
Confidence 7999999999999999998876 788888764
No 427
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=84.56 E-value=1.2 Score=44.74 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 6 DVvVVG~G~AGl~AAl~Aa~~G--------------~~VivlEK~ 36 (549)
T PRK12834 6 DVIVVGAGLAGLVAAAELADAG--------------KRVLLLDQE 36 (549)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 7999999999999999998876 788888764
No 428
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.53 E-value=3.8 Score=39.80 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCc-eEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 161 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~-V~~ 161 (352)
.++|+|+|-|-+|+.+|..|.+.+ .+|++.+..+.... +. ...+...+|++..++ -.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--------------~~v~v~D~~~~~~~--~~-----~~~~~~~~i~~~~g~~~~- 64 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--------------AEVTVSDDRPAPEG--LA-----AQPLLLEGIEVELGSHDD- 64 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--------------CeEEEEcCCCCccc--hh-----hhhhhccCceeecCccch-
Confidence 469999999999999999999987 89999986532211 11 112334566666551 11
Q ss_pred EECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 162 VDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 162 v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
. ..-.+|+||..+|..+.
T Consensus 65 --------~--~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 65 --------E--DLAEFDLVVKSPGIPPT 82 (448)
T ss_pred --------h--ccccCCEEEECCCCCCC
Confidence 0 12358899999998887
No 429
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.43 E-value=1 Score=45.56 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 5 DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lieK~ 35 (589)
T PRK08641 5 KVIVVGGGLAGLMATIKAAEAG--------------VHVDLFSLV 35 (589)
T ss_pred cEEEECchHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 7999999999999999998866 788888853
No 430
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=84.36 E-value=1.4 Score=44.84 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=31.5
Q ss_pred CccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 209 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 209 ~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
...+| +.|++||+|||+.. + +-..+..+..+|.+++.++...+.
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~----~---~h~l~~nsl~eg~~ag~~a~~~~~ 443 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGA----S---PHKFSSGSFTEGRIAAKAAVRWIL 443 (614)
T ss_pred cCCcc-ccCCEEeceecccC----c---chhhHHhHHHHHHHHHHHHHHHHH
Confidence 44455 89999999999752 1 123566777889999988877654
No 431
>PLN02602 lactate dehydrogenase
Probab=84.22 E-value=1.8 Score=40.71 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|||+|.+|..+|..|....- ..++.|++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l------------~~el~LiDi~ 71 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL------------ADELALVDVN 71 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------------CCEEEEEeCC
Confidence 599999999999999998875431 1589999875
No 432
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=84.13 E-value=3.5 Score=40.78 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEcCCcEEecceEEEecCCC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 187 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 187 (352)
..+.+.+.+.+++.|++++.+ .|++|.. + .|.+++|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467778888889999999999 7988753 3 4677888899999999998853
No 433
>PRK04148 hypothetical protein; Provisional
Probab=83.96 E-value=1.3 Score=35.34 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+++++||.| .|.++|..|++.+ .+|+.++-+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G--------------~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESG--------------FDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCC--------------CEEEEEECC
Confidence 589999999 9999999999877 899999854
No 434
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.94 E-value=1.2 Score=44.99 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 7 DVvVVG~G~AGl~AAl~Aae~G--------------~~V~lveK~ 37 (566)
T PRK06452 7 DAVVIGGGLAGLMSAHEIASAG--------------FKVAVISKV 37 (566)
T ss_pred cEEEECccHHHHHHHHHHHHCC--------------CcEEEEEcc
Confidence 7999999999999999998765 788888754
No 435
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=83.86 E-value=1.6 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|+|+|..|+..+- .++++++..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-------------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-------------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-------------CeEEEEcCC
Confidence 58999999999999999998772 689999875
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.83 E-value=1.9 Score=40.43 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
..+|+|||+|-.|.++|..|+..+- .++++++..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv-------------g~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV-------------GKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 3599999999999999999998771 489999885
No 437
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=83.82 E-value=6 Score=36.02 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
+++++|+|+|-++--++..|++.+. .+|+++.+.. +-.+.+.+.+.+.+..+......+
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~-------------~~i~V~NRt~-------~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA-------------KRITVVNRTR-------ERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeCCH-------HHHHHHHHHhhhcccccccccccc-
Confidence 4689999999999999999998772 6899998742 334455555665554111111111
Q ss_pred ECCeEEEcCCcEE-ecceEEEecCCC
Q 018671 163 DSQKLILNDGTEV-PYGLLVWSTGVG 187 (352)
Q Consensus 163 ~~~~v~~~~g~~i-~~D~vi~a~G~~ 187 (352)
-+.. ++|.+|=||...
T Consensus 185 ---------~~~~~~~dliINaTp~G 201 (283)
T COG0169 185 ---------LEGLEEADLLINATPVG 201 (283)
T ss_pred ---------cccccccCEEEECCCCC
Confidence 1112 699999998653
No 438
>PRK08401 L-aspartate oxidase; Provisional
Probab=83.78 E-value=1.6 Score=42.81 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=36.5
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHH
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNR 257 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~ 257 (352)
.|.|.||...|+ ..|++||+|+|+.. ...|...+. .....++-.|+.+++++..
T Consensus 310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~-G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRT-GIKNLYAIGEAASN-GFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcc-cCCCEEECcccccc-CCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 477999999997 89999999999731 111222222 2234567778888888754
No 439
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.74 E-value=1.5 Score=38.50 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+++|+|+|..|..+|..|.+.+ .+|++++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g--------------~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG--------------HNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC--------------CceEEEEcC
Confidence 7999999999999999999877 899999864
No 440
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.72 E-value=1.5 Score=44.49 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G--------------~~V~lleK~ 39 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSG--------------QSCALLSKV 39 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcC--------------CcEEEEEcc
Confidence 6999999999999999998765 789998875
No 441
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=83.69 E-value=3.9 Score=39.18 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEEC--CeE--EEcCC-----cEEecceEEEecCCCcchhhhhcC
Q 018671 137 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDG-----TEVPYGLLVWSTGVGPSTLVKSLD 196 (352)
Q Consensus 137 ~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~~v--~~~~g-----~~i~~D~vi~a~G~~~~~~~~~~~ 196 (352)
..+...+.+.+++.|++++.+ +|.+++. +.+ .+.++ .++.+|.||+|+|.....+...++
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 355666778888999999998 7888864 333 33332 379999999999988765554433
No 442
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=83.64 E-value=1.5 Score=44.72 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G--------------~~V~lveK~ 61 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELG--------------YKTACISKL 61 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcC--------------CcEEEEecc
Confidence 7999999999999999998765 788888775
No 443
>PRK07512 L-aspartate oxidase; Provisional
Probab=83.63 E-value=1.5 Score=43.54 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~ 259 (352)
.|.|.||.+.++ +.|++||+|+|+.. ...|...+. .....|.-.|+.+++++....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVAST-GLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred cCCEEECCCCcc-ccCCEEeccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899998887 89999999999731 111221111 233456778899998887654
No 444
>PRK08328 hypothetical protein; Provisional
Probab=83.56 E-value=2.1 Score=37.76 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=30.1
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..+|+|+|+|-.|.++|..|+..+- .++++++..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv-------------g~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV-------------GRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 44699999999999999999998872 688999865
No 445
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=83.52 E-value=1.4 Score=44.27 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+.+|..+++.+ .+|.|++..
T Consensus 8 DvvIiG~G~aGl~aA~~~a~~G--------------~~v~liEk~ 38 (557)
T PRK12844 8 DVVVVGSGGGGMCAALAAADSG--------------LEPLIVEKQ 38 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecC
Confidence 7999999999999999999876 788888865
No 446
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.45 E-value=1.8 Score=43.66 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCccccCCccccCC-----CCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPS-----VQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~-----~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.+.||.+.|+.+ .|++||+|+|+.. ...|...+. .....|.-.|++++++++..++
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAV-SVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEeccccccc-cccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 47788999888832 8999999999751 011222222 2335678889999998876653
No 447
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.41 E-value=1.8 Score=38.58 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=30.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..+|+|||.|..|.++|..|+..+- .++++++..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-------------GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEcCC
Confidence 34699999999999999999998772 588999875
No 448
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=83.25 E-value=2.9 Score=40.75 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=48.0
Q ss_pred cEEEECCChHHHH-HHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 018671 85 HCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 162 (352)
Q Consensus 85 ~vvVvGgG~~g~e-~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~V~~v 162 (352)
++.+||-|-+|+. +|..|.+.+ .+|+..+.... + ..+.|++.||++..+ ....+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G--------------~~v~~~D~~~~-----~-----~~~~l~~~gi~~~~g~~~~~~ 56 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG--------------YQVSGSDIAEN-----A-----TTKRLEALGIPIYIGHSAENL 56 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC--------------CeEEEECCCcc-----h-----HHHHHHHCcCEEeCCCCHHHC
Confidence 3689999999998 899998877 89998886431 1 123467778887653 11101
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
-.+|+||..+|..+.
T Consensus 57 ------------~~~d~vV~spgi~~~ 71 (448)
T TIGR01082 57 ------------DDADVVVVSAAIKDD 71 (448)
T ss_pred ------------CCCCEEEECCCCCCC
Confidence 127888888888875
No 449
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.14 E-value=1.3 Score=45.23 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 128 (352)
.|+|||+|.+|+-+|.++++.+ .+|+|++.
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G--------------~~VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELG--------------YNVKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcC--------------CcEEEEec
Confidence 7999999999999999998865 67777764
No 450
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=83.06 E-value=1.6 Score=44.58 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G--------------~~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHG--------------FNTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcC--------------CcEEEEEcC
Confidence 6999999999999999998765 788888875
No 451
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.97 E-value=2.3 Score=37.81 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 130 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 130 (352)
.+|+|+|.|..|.++|..|+..+- .++++++...
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gv-------------g~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGV-------------GNLTLLDFDT 58 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCC-------------CEEEEEeCCc
Confidence 499999999999999999998772 6889998763
No 452
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=82.95 E-value=1 Score=44.19 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 133 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~ 133 (352)
..|+|||||.+|.-+|...+.++ .++.|+|.+++..
T Consensus 68 fDVLIIGGGAtGaGcALDA~TRG--------------LktaLVE~~DF~S 103 (680)
T KOG0042|consen 68 FDVLIIGGGATGAGCALDAATRG--------------LKTALVEAGDFAS 103 (680)
T ss_pred ccEEEECCCccCcceeehhhccc--------------ceeEEEecccccC
Confidence 37999999999999999998877 8999999887653
No 453
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=82.90 E-value=1.2 Score=44.39 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=19.2
Q ss_pred EEEECCChHHHHHHHHHHHhH
Q 018671 86 CVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~ 106 (352)
++|||+|.+|+-+|..|++..
T Consensus 2 ~iIVG~G~aG~vvA~rLs~~~ 22 (532)
T TIGR01810 2 YIIIGGGSAGSVLAGRLSEDV 22 (532)
T ss_pred EEEECCCchHHHHHHHhccCC
Confidence 799999999999999999754
No 454
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=82.87 E-value=2.3 Score=39.23 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHhCCCEEEeC-ceEEEEC--C---eEEEcCCc--EEecceEEEecCCCcch-hhhh----------cC
Q 018671 136 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGT--EVPYGLLVWSTGVGPST-LVKS----------LD 196 (352)
Q Consensus 136 ~~~~~~~~~~~l~~~gV~v~~~-~V~~v~~--~---~v~~~~g~--~i~~D~vi~a~G~~~~~-~~~~----------~~ 196 (352)
+-.+++.+...+++.|.-+..+ +|...+- + .|.+.+.. .+.+|..|+|+|.--.. +..+ ++
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld 336 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD 336 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc
Confidence 3467888899999999988888 7776543 3 34455554 46799999999964321 2111 11
Q ss_pred CCCCC-------------C----CccccCCccccC----CCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHH
Q 018671 197 LPKSP-------------G----GRIGIDEWLRVP----SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 255 (352)
Q Consensus 197 l~~~~-------------~----G~i~Vd~~l~~~----~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i 255 (352)
+..++ . =.+.+|+++|.. -..|+||||-+..-.+|... ---.-+|+-.|..+|..|
T Consensus 337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~e---gcGsGVaivta~~aa~qi 413 (421)
T COG3075 337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAE---GCGSGVAIVTALHAAEQI 413 (421)
T ss_pred cccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHh---cCCcchHHHHHHHHHHHH
Confidence 11100 0 016667777642 25799999998864443110 111236777777888777
Q ss_pred HHHh
Q 018671 256 NRIG 259 (352)
Q Consensus 256 ~~~~ 259 (352)
....
T Consensus 414 ~~~~ 417 (421)
T COG3075 414 AERA 417 (421)
T ss_pred HHHh
Confidence 6544
No 455
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=82.83 E-value=1.5 Score=44.68 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=24.9
Q ss_pred EEEECCChHHHHHHHHHH----HhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 86 CVVVGGGPTGVEFSGELS----DFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~----~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
|+|||+|.+|+-+|.+++ +.+ .+|+|++..
T Consensus 2 VlVIGsG~AGL~AAl~Aa~~~~e~G--------------~~VilieK~ 35 (614)
T TIGR02061 2 LLIVGGGMGGCGAAFEAVYWGDKKG--------------LKIVLVEKA 35 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhhhhCC--------------CeEEEEEcc
Confidence 899999999999999997 333 688888764
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.78 E-value=2.4 Score=44.17 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+.-++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G--------------~~V~l~d~~ 367 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKG--------------LKTVLKDAT 367 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCC--------------CcEEEecCC
Confidence 35578999999999999999998876 899999976
No 457
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=82.78 E-value=1.9 Score=39.27 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=45.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEEE
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 163 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v~ 163 (352)
++|+|||||.-|. +.++.+.. +-.+++++| .++.+.+...+.|....-...-.+++=+.
T Consensus 78 k~VLiiGgGdG~t--lRevlkh~------------~ve~i~~VE-------ID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 78 KRVLIIGGGDGGT--LREVLKHL------------PVERITMVE-------IDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred CeEEEECCCccHH--HHHHHhcC------------CcceEEEEE-------cCHHHHHHHHHhccCcccccCCCceEEEe
Confidence 6999999998875 44554433 127889987 46777777777766542111111444333
Q ss_pred CCeEEE-cCCcEEecceEEEec
Q 018671 164 SQKLIL-NDGTEVPYGLLVWST 184 (352)
Q Consensus 164 ~~~v~~-~~g~~i~~D~vi~a~ 184 (352)
.|+..+ .+.+. .+|+||+=.
T Consensus 137 ~Dg~~~v~~~~~-~fDvIi~D~ 157 (282)
T COG0421 137 DDGVEFLRDCEE-KFDVIIVDS 157 (282)
T ss_pred ccHHHHHHhCCC-cCCEEEEcC
Confidence 333222 11122 789888643
No 458
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=82.70 E-value=1.9 Score=38.11 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|+|++..|+..+- .++++++..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-------------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-------------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 58999999999999999998762 688888875
No 459
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=82.69 E-value=1.4 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|..+++.+ .+|+||++.
T Consensus 9 DvvVvG~G~aG~~aA~~aa~~G--------------~~v~llEk~ 39 (557)
T PRK07843 9 DVVVVGSGAAGMVAALTAAHRG--------------LSTVVVEKA 39 (557)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 7999999999999999999876 899999985
No 460
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=82.66 E-value=1.4 Score=45.34 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-.|.++++.+ .+|+|++..
T Consensus 7 DVlVIG~G~AGl~AAi~Aae~G--------------~~VivleK~ 37 (657)
T PRK08626 7 DALVIGAGLAGLRVAIAAAQRG--------------LDTIVLSLV 37 (657)
T ss_pred cEEEECccHHHHHHHHHHHHcC--------------CCEEEEeCC
Confidence 6999999999999999998866 788888753
No 461
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=82.59 E-value=2.4 Score=40.42 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=35.0
Q ss_pred ccCCccccCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhh
Q 018671 206 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 206 ~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.++.+|+++..+|+|++|+.+.. .--..|..||-+++.|+...++
T Consensus 345 ~l~~~l~~k~~~~lf~AGqi~G~----------~Gy~eaaa~G~~ag~na~~~~~ 389 (392)
T PF01134_consen 345 QLLNTLETKKIPGLFFAGQINGT----------EGYEEAAAQGLIAGINAARRLQ 389 (392)
T ss_dssp GBBTTSBBSSSBTEEE-GGGGTB-----------SHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccceEECCCCCceECCCCcch----------hHHHHHHHHHHHHHHHHHHHHc
Confidence 34458999889999999999963 2245788899999999988765
No 462
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.59 E-value=3.1 Score=43.20 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=30.1
Q ss_pred ccCCcEEEECCChHHHHHHHHHH-HhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~-~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..++|.|||+|..|..+|..++ ..+ .+|++++..
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G--------------~~V~l~d~~ 342 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAG--------------LPVRIKDIN 342 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 34578999999999999999988 555 899999975
No 463
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.45 E-value=2.4 Score=36.81 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=29.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..+|+|||+|-.|.++|..|+..+- .++++++..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-------------GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 34599999999999999999998762 468888875
No 464
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.43 E-value=2.1 Score=43.71 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
-|.|.||...+.++.|++||+|+|+.-. .|...++ .....|.-.|+.++++++..++
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~--hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGM--HGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEcccccccc--CcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4778999876544899999999987522 2322222 2345677888999888876543
No 465
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=82.26 E-value=14 Score=37.62 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEECC-----eEEEcCCcEEecceEEEecCCCcchh
Q 018671 139 LRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTL 191 (352)
Q Consensus 139 ~~~~~~~~l~~~gV~v~~~-~V~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~~~~~ 191 (352)
+-..+....++.|+.|+.+ .|+++.-. +|.+.-| .|++..+|=|+|+-+..+
T Consensus 189 lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~V 246 (856)
T KOG2844|consen 189 LCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREV 246 (856)
T ss_pred HHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHh
Confidence 4455566677899999988 78887532 5666666 599999999999987654
No 466
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=82.17 E-value=3.7 Score=38.19 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=28.0
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGg-G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|.|||+ |..|..+|..|....-. ......++.|++..
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~-------~~~~~~el~L~Di~ 43 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELF-------GKDQPVVLHLLDIP 43 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcc-------cCCCccEEEEEecC
Confidence 59999998 99999999988754310 01122489999874
No 467
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=81.91 E-value=1.8 Score=43.32 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|++|+-.|..|++.+ .+|.+||++
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g--------------~~v~~~e~~ 32 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAG--------------LKVAMVEIG 32 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 5899999999999999999866 788888775
No 468
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.75 E-value=12 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=27.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+++|+|+|.+|+..+..+..++ .+|++++..
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG--------------A~V~v~d~~ 196 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG--------------AIVRAFDTR 196 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCC
Confidence 59999999999999999988877 778888753
No 469
>PLN02785 Protein HOTHEAD
Probab=81.74 E-value=1.5 Score=44.31 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=19.6
Q ss_pred CcEEEECCChHHHHHHHHHHH
Q 018671 84 LHCVVVGGGPTGVEFSGELSD 104 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~ 104 (352)
-.++|||+|.+|+-+|..|++
T Consensus 56 yD~IIVG~G~aG~~lA~~Ls~ 76 (587)
T PLN02785 56 YDYIVVGGGTAGCPLAATLSQ 76 (587)
T ss_pred CCEEEECcCHHHHHHHHHHhc
Confidence 379999999999999999987
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.70 E-value=3.6 Score=42.62 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.6
Q ss_pred ccCCcEEEECCChHHHHHHHHHHH-hHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 81 SRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 81 ~~~~~vvVvGgG~~g~e~A~~l~~-~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+..++|.|||+|..|..+|..++. .+ .+|++++..
T Consensus 302 ~~i~~v~ViGaG~mG~~iA~~~a~~~G--------------~~V~l~d~~ 337 (699)
T TIGR02440 302 AKIKKVGILGGGLMGGGIASVTATKAG--------------IPVRIKDIN 337 (699)
T ss_pred ccccEEEEECCcHHHHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 345689999999999999998873 55 899999976
No 471
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.68 E-value=4.2 Score=39.58 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=47.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHh--CCCEEEeC--ce
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK--SGVRLVRG--IV 159 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~--~gV~v~~~--~V 159 (352)
..|+|+|-|-+|+.+|..|.+.+ .+|+..+..... + . .+.|++ .||++..+ ..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G--------------~~v~~~D~~~~~----~-~----~~~l~~~~~g~~~~~~~~~~ 63 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQG--------------IPFAVMDSREQP----P-G----LDTLAREFPDVELRCGGFDC 63 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCC--------------CeEEEEeCCCCc----h-h----HHHHHhhcCCcEEEeCCCCh
Confidence 38999999999999999998877 899998865311 1 1 123454 37877643 11
Q ss_pred EEEECCeEEEcCCcEEecceEEEecCCCcc
Q 018671 160 KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 189 (352)
Q Consensus 160 ~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~ 189 (352)
..+ -.+|.||.++|..+.
T Consensus 64 ~~~------------~~~d~vV~sp~i~~~ 81 (448)
T PRK03803 64 ELL------------VQASEIIISPGLALD 81 (448)
T ss_pred HHh------------cCCCEEEECCCCCCC
Confidence 111 136778888887664
No 472
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.68 E-value=2.1 Score=35.96 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|.++|..|+..+- .++++++..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-------------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-------------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-------------CeEEEEeCC
Confidence 58999999999999999998762 468998875
No 473
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=81.64 E-value=2 Score=39.25 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|..|+|++..|+..+- .++++++..
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-------------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-------------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence 58999999999999999998772 588888875
No 474
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=81.62 E-value=1.4 Score=44.25 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+||||+|..|+.+|..|++-+ .+|.++|.+
T Consensus 9 D~vIVGsG~aG~~lA~rLs~~g--------------~~VllLEaG 39 (542)
T COG2303 9 DYVIVGSGSAGSVLAARLSDAG--------------LSVLVLEAG 39 (542)
T ss_pred CEEEECCCchhHHHHHHhcCCC--------------CeEEEEeCC
Confidence 7999999999999999999544 888888886
No 475
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.49 E-value=3.1 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=36.0
Q ss_pred CccccCCcccc---------CCCCCEEEEccccccccCCCCcCC-CCchHHHHHHHHHHHHHHHHHh
Q 018671 203 GRIGIDEWLRV---------PSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 203 G~i~Vd~~l~~---------~~~~~IfaiGD~a~~~~~~~~~~~-~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
|.+.+|...++ +..|++||+|+|+... ..|...+ ..+...|.-.|+.++++++..+
T Consensus 340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVS-VHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CCcccCCCCeeecccccccCCccCCeeecccccccC-CCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 55677765554 2689999999987411 1122111 2334567888999999887654
No 476
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=81.43 E-value=2.5 Score=36.74 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHHHhCCCEEEeCceEEE
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 162 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~V~~v 162 (352)
+++|+|||||-.|..=|..|.+.+ .+|+++.+.- .+++. ....+.+++++.. ..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g--------------a~v~Vvs~~~-----~~el~----~~~~~~~i~~~~~---~~ 65 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG--------------ADVTVVSPEF-----EPELK----ALIEEGKIKWIER---EF 65 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEcCCc-----cHHHH----HHHHhcCcchhhc---cc
Confidence 369999999999999888888776 8999997532 33433 3333344433221 11
Q ss_pred ECCeEEEcCCcEEecceEEEecCCCc
Q 018671 163 DSQKLILNDGTEVPYGLLVWSTGVGP 188 (352)
Q Consensus 163 ~~~~v~~~~g~~i~~D~vi~a~G~~~ 188 (352)
+. .....++++|.||+-..
T Consensus 66 ~~-------~~~~~~~lviaAt~d~~ 84 (210)
T COG1648 66 DA-------EDLDDAFLVIAATDDEE 84 (210)
T ss_pred Ch-------hhhcCceEEEEeCCCHH
Confidence 11 11233999999998754
No 477
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=81.28 E-value=2.6 Score=42.81 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~ 259 (352)
.|.+.+|.+.++ +.|++||+|+|+.- ..|...+. .....+.-.|+.+++++....
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~--~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFS--QHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccC--cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999988 89999999999742 22322222 233467778888888876653
No 478
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=81.24 E-value=2.1 Score=39.59 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEECCChHHHHHHHHHHHhH
Q 018671 85 HCVVVGGGPTGVEFSGELSDFI 106 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~ 106 (352)
.|+|||||..|+.++..+.+.+
T Consensus 4 Dv~IIGGGLAGltc~l~l~~~G 25 (421)
T COG3075 4 DVAIIGGGLAGLTCGLALQQAG 25 (421)
T ss_pred cEEEEcCcHHHHHHHHHHHhcC
Confidence 6899999999999999999987
No 479
>PRK06153 hypothetical protein; Provisional
Probab=81.23 E-value=4.7 Score=38.29 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCCCCC-----CC---Cc-HH------HHHHHHHHH
Q 018671 83 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----SS---FD-DR------LRHYATTQL 147 (352)
Q Consensus 83 ~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----~~---~~-~~------~~~~~~~~l 147 (352)
.++|+|||.|-+|..++..|++.+- .+++|++...+- .. +. .+ =.+.+.+.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-------------geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl 242 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-------------REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRY 242 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-------------CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHH
Confidence 3599999999999999999999872 689999875221 11 11 11 223355556
Q ss_pred HhCCCEEEeCceEEEECCeEEEcCCcEEecceEEEecCCCcch-h----hhhcCCCCCCCC-cccc-CC----cc----c
Q 018671 148 SKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-L----VKSLDLPKSPGG-RIGI-DE----WL----R 212 (352)
Q Consensus 148 ~~~gV~v~~~~V~~v~~~~v~~~~g~~i~~D~vi~a~G~~~~~-~----~~~~~l~~~~~G-~i~V-d~----~l----~ 212 (352)
.+.+.++..- ...++++.+. .--.+|.||.|+...... + ....+++.-.-| .+.+ |. .+ -
T Consensus 243 ~~in~~I~~~-~~~I~~~n~~----~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~~g~l~G~~Rvt~~ 317 (393)
T PRK06153 243 SNMRRGIVPH-PEYIDEDNVD----ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELSNGSLGGILRVTLS 317 (393)
T ss_pred HHhCCeEEEE-eecCCHHHHH----HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceecCCCcCcEEEEEEe
Confidence 6555433211 1112222211 112499999999876542 2 222233210000 0111 11 11 1
Q ss_pred cCCCCCEEEEccccccccCCCCcCCCCchHHHHHHHHHHHHHHHHHhhh
Q 018671 213 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 261 (352)
Q Consensus 213 ~~~~~~IfaiGD~a~~~~~~~~~~~~~~~~~A~~qg~~~a~~i~~~~~~ 261 (352)
+++.++.. -+.+++.++.+..-+....|.|.--|-.|+-.+.++-+.
T Consensus 318 ~p~~~~~~--~~~~s~~~~~~~~~Y~~niQiaelNalnA~lavikwKk~ 364 (393)
T PRK06153 318 TPDKRDHV--DGRLPFSDDDDNDVYSSNIQIAELNALNAALAVIKWKKL 364 (393)
T ss_pred cCCccccc--cccCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 22222222 234444333333345668899998888888777776553
No 480
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.08 E-value=2.1 Score=39.08 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|.|||+|..|..+|..+++.+ .+|++++..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--------------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--------------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--------------CcEEEEeCC
Confidence 38999999999999999998866 789999875
No 481
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=80.68 E-value=16 Score=36.17 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=5.4
Q ss_pred eCCEEEEcCC
Q 018671 23 SYDKLVIALG 32 (352)
Q Consensus 23 ~yD~LViAtG 32 (352)
.||.+||.-|
T Consensus 6 ~~DvvIIGgG 15 (497)
T PRK13339 6 SKDVVLVGAG 15 (497)
T ss_pred cCCEEEECch
Confidence 3455555555
No 482
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.36 E-value=3.2 Score=41.96 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCccccCCccccC-----CCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVP-----SVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~-----~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.|+. ..|++||+|+|+.. ...|...+. .....|.-.|+.+++++....+
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACV-SVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccc-cccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4668888777752 58999999999741 111222222 2335678889999998876543
No 483
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.03 E-value=2.8 Score=36.97 Aligned_cols=33 Identities=30% Similarity=0.288 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+|+|+|.|-.|.++|..|+..+- .+++|++..
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GV-------------g~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGV-------------GKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC-------------CEEEEECCC
Confidence 499999999999999999998772 589999875
No 484
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.91 E-value=2.6 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 84 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 84 ~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
++|.|||+|..|..+|..++..+ .+|++++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--------------~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--------------YDVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--------------CeEEEEeCC
Confidence 48999999999999999998876 799999874
No 485
>PRK06175 L-aspartate oxidase; Provisional
Probab=79.88 E-value=2.9 Score=40.57 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=37.9
Q ss_pred CCccccCCccccCCCCCEEEEccccc--cccCCCCcCC-CCchHHHHHHHHHHHHHHHHHh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSG--YLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~--~~~~~~~~~~-~~~~~~A~~qg~~~a~~i~~~~ 259 (352)
.|.|.||...|+ ..|++||+|.|+. +. |...+ ......+.--|+.++++++...
T Consensus 331 ~GGi~vd~~~~t-~i~gLYAaGE~a~~g~h---G~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 331 MGGIKVDLNSKT-SMKNLYAFGEVSCTGVH---GANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred cCCEEECCCccc-cCCCeEecccccccCCC---ccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 477999998886 8999999999963 22 22111 1233567788899999886544
No 486
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=79.86 E-value=2.4 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|..|+-.|+++++.+ .+|.+++..
T Consensus 7 dvivvgaglaglvaa~elA~aG--------------~~V~ildQE 37 (552)
T COG3573 7 DVIVVGAGLAGLVAAAELADAG--------------KRVLILDQE 37 (552)
T ss_pred cEEEECccHHHHHHHHHHHhcC--------------ceEEEEccc
Confidence 7999999999999999999988 788888763
No 487
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.86 E-value=3.2 Score=42.06 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=39.5
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.|.||.+.++ ..|++||+|+|+.-. .|...+. .+...|.-.|+.+++++...++
T Consensus 355 ~GGi~vd~~~~t-~I~GLyAaGE~~~g~--hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 355 MGGLWVDYDQMT-NIPGLFAAGECDYSY--HGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CCCeEECCCCCe-ECCCEEECcccccCC--CCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 477999998887 899999999997421 2322222 2345677889999988876543
No 488
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.84 E-value=3.5 Score=41.91 Aligned_cols=56 Identities=18% Similarity=0.081 Sum_probs=36.0
Q ss_pred CccccCCcccc---------CCCCCEEEEccccccccCCCCcCCCC-chHHHHHHHHHHHHHHHHHh
Q 018671 203 GRIGIDEWLRV---------PSVQDVFAVGDCSGYLESTGKTVLPA-LAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 203 G~i~Vd~~l~~---------~~~~~IfaiGD~a~~~~~~~~~~~~~-~~~~A~~qg~~~a~~i~~~~ 259 (352)
|.+.+|.+.|+ ++.|++||+|+|+.. ...|...+.. ....|.-.|+.++++++..+
T Consensus 363 GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 363 GGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACV-SVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CCcccCCCceeecccccccCCccCceeeccccccc-CCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 55667766553 368999999999742 1112222222 33468888999999887654
No 489
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.77 E-value=3.8 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.9
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.+++|.|||.|.+|-++|..+..++ .+|+.+++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--------------~~V~~~d~~ 68 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--------------MRVIGYDRS 68 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---------------EEEEEESS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--------------ceeEEeccc
Confidence 4579999999999999999999887 899999874
No 490
>PRK00536 speE spermidine synthase; Provisional
Probab=79.66 E-value=3.6 Score=37.04 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=22.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeC
Q 018671 82 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 128 (352)
Q Consensus 82 ~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 128 (352)
..++|+|||||..|. |.|+.++- .+|++++-
T Consensus 72 ~pk~VLIiGGGDGg~--~REvLkh~--------------~~v~mVeI 102 (262)
T PRK00536 72 ELKEVLIVDGFDLEL--AHQLFKYD--------------THVDFVQA 102 (262)
T ss_pred CCCeEEEEcCCchHH--HHHHHCcC--------------CeeEEEEC
Confidence 346999999999875 55554432 48999984
No 491
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=79.57 E-value=5.2 Score=40.54 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=36.2
Q ss_pred hhccCCCCCHHHhccCCcEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 68 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
...-.|+.+.+ +=+..+|+|||+|-.|+.+|..|+.++- .++++++..
T Consensus 324 kWRllP~l~~e-kL~~~kVLIvGaGGLGs~VA~~La~~GV-------------g~ItlVD~D 371 (664)
T TIGR01381 324 KWRLHPDLQLE-RYSQLKVLLLGAGTLGCNVARCLIGWGV-------------RHITFVDNG 371 (664)
T ss_pred hhhcCChhhHH-HHhcCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEcCC
Confidence 33444544443 3344699999999999999999999883 689999876
No 492
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=79.56 E-value=2.7 Score=38.52 Aligned_cols=32 Identities=22% Similarity=0.623 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|+|||+|-.|+++|..|+.++- .++++++..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-------------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-------------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCC
Confidence 58999999999999999999873 588888865
No 493
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.55 E-value=3.3 Score=41.94 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCccccCCcccc-----CCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHhh
Q 018671 202 GGRIGIDEWLRV-----PSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIGK 260 (352)
Q Consensus 202 ~G~i~Vd~~l~~-----~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~~ 260 (352)
.|.+.+|.+.|+ +..|++||+|+|+.. ...|...+. .....|.-.|+.++++++..++
T Consensus 356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACV-SVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCCeeECCCceEecCCCCCcCCeeeccccccC-CCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 366777776664 368999999999741 111222222 2334577788999988876543
No 494
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.55 E-value=2.5 Score=38.95 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
+|.|||+|..|..+|..++..+ .+|+++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G--------------~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAG--------------HEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCC--------------CeeEEEeCC
Confidence 7999999999999999999876 799999875
No 495
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=79.37 E-value=6.3 Score=39.03 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCC-CEEEeC-ceEEEEC--Ce---EEEc---CCc--EEecceEEEecCCCcchhhhhcCCC
Q 018671 137 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 198 (352)
Q Consensus 137 ~~~~~~~~~~l~~~g-V~v~~~-~V~~v~~--~~---v~~~---~g~--~i~~D~vi~a~G~~~~~~~~~~~l~ 198 (352)
..+.+.+.+.+++.| ++++.+ +|++++. ++ +.+. +|+ ++.++.||+|+|.....+.+.++++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456777778888876 999998 8988864 32 4432 353 6999999999999888777776654
No 496
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=79.21 E-value=3.8 Score=41.94 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=35.7
Q ss_pred CccccCCcccc---------CCCCCEEEEccccccccCCCCcCCC-CchHHHHHHHHHHHHHHHHHh
Q 018671 203 GRIGIDEWLRV---------PSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 259 (352)
Q Consensus 203 G~i~Vd~~l~~---------~~~~~IfaiGD~a~~~~~~~~~~~~-~~~~~A~~qg~~~a~~i~~~~ 259 (352)
|.|.||...|+ ++.|++||+|+|+.. ...|...+. .....|.-.|+.+++++...+
T Consensus 401 GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~-g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 401 GGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACA-SVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CCcccCCCCeEecccCcccCCccCceEeeeccccc-cCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 56777766553 368999999999741 111222221 234567888999998887654
No 497
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=79.18 E-value=3.9 Score=32.85 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC-CCCC
Q 018671 86 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 133 (352)
Q Consensus 86 vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~ 133 (352)
++|+|+|+.+..++...+.++ .+|+++++. +.+|
T Consensus 1 L~I~GaG~va~al~~la~~lg--------------~~v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLG--------------FRVTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCT--------------EEEEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCC--------------CEEEEEcCCccccC
Confidence 479999999999999999887 999999986 4443
No 498
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=79.06 E-value=2.8 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=27.2
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-+|.++++.+ ++.+|+|++..
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g------------~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEAN------------PNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhC------------CCCcEEEEEcc
Confidence 6999999999999999998753 12588998875
No 499
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.98 E-value=2.1 Score=42.98 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=24.7
Q ss_pred cEEEECCChHHHHHHHHHHHhHhhHHHhhcCCCCCccEEEEEeCC
Q 018671 85 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 129 (352)
Q Consensus 85 ~vvVvGgG~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 129 (352)
.|+|||+|.+|+-+|.++ +.+ .+|+|++..
T Consensus 9 DVlVVG~G~AGl~AAi~A-~~G--------------~~VilleK~ 38 (543)
T PRK06263 9 DVLIIGSGGAGARAAIEA-ERG--------------KNVVIVSKG 38 (543)
T ss_pred CEEEECccHHHHHHHHHH-hcC--------------CCEEEEEcc
Confidence 799999999999999888 654 677777664
No 500
>PLN02815 L-aspartate oxidase
Probab=78.82 E-value=3.6 Score=41.74 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=37.1
Q ss_pred CCccccCCccccCCCCCEEEEccccccccCCCCcCC-CCchHHHHHHHHHHHHHHHHH
Q 018671 202 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRI 258 (352)
Q Consensus 202 ~G~i~Vd~~l~~~~~~~IfaiGD~a~~~~~~~~~~~-~~~~~~A~~qg~~~a~~i~~~ 258 (352)
.|.|.||.+.|+ ..|++||+|+|+.. ...|...+ ......+.-.|+.+++++...
T Consensus 377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~-G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 377 CGGVRTGLQGET-NVQGLYAAGEVACT-GLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCCeeECCCCce-ecCCEEeccccccc-CCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 477999999997 89999999999741 11122121 223356777788888877654
Done!