Query 018674
Match_columns 352
No_of_seqs 163 out of 1068
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00219 Sec61 alpha subunit; 100.0 7.1E-79 1.5E-83 617.7 29.3 349 2-351 2-350 (474)
2 KOG1373 Transport protein Sec6 100.0 1.1E-77 2.4E-82 575.0 28.5 349 2-351 1-349 (476)
3 PRK08568 preprotein translocas 100.0 7.8E-74 1.7E-78 580.0 28.6 328 5-351 1-330 (462)
4 COG0201 SecY Preprotein transl 100.0 6.1E-67 1.3E-71 522.3 21.5 298 14-346 2-320 (436)
5 PRK09204 secY preprotein trans 100.0 9.1E-63 2E-67 495.3 21.8 285 21-345 5-314 (426)
6 TIGR00967 3a0501s007 preprotei 100.0 3.1E-62 6.7E-67 489.8 21.1 260 31-314 1-276 (410)
7 PRK12907 secY preprotein trans 100.0 2.1E-61 4.5E-66 485.2 24.0 285 24-345 8-316 (434)
8 CHL00161 secY preprotein trans 100.0 1.2E-60 2.6E-65 479.0 23.2 260 23-314 3-279 (417)
9 PRK12417 secY preprotein trans 100.0 5.8E-58 1.3E-62 457.1 23.9 272 24-345 6-288 (404)
10 TIGR02920 acc_sec_Y2 accessory 100.0 7.9E-54 1.7E-58 426.9 24.6 250 29-319 1-261 (395)
11 PF00344 SecY: SecY translocas 100.0 7.8E-49 1.7E-53 385.5 17.7 225 77-328 1-236 (346)
12 PF10559 Plug_translocon: Plug 97.9 4.4E-06 9.6E-11 55.5 1.9 35 42-76 1-35 (35)
13 PF04923 Ninjurin: Ninjurin ; 72.5 7 0.00015 32.3 4.6 45 84-128 45-92 (104)
14 COG3125 CyoD Heme/copper-type 22.2 3.7E+02 0.0081 22.5 6.5 56 118-173 47-108 (111)
15 PRK10582 cytochrome o ubiquino 20.4 5E+02 0.011 21.6 6.9 50 118-167 45-100 (109)
No 1
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=7.1e-79 Score=617.71 Aligned_cols=349 Identities=74% Similarity=1.251 Sum_probs=312.4
Q ss_pred CCccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhc
Q 018674 2 GGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMEL 81 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsL 81 (352)
.-||+++|.+||+++++|||++|++++++|+|++||++++++||+|++||+||+|.++..|++.+++++++++++|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~L 81 (474)
T PTZ00219 2 AKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMEL 81 (474)
T ss_pred CCcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHh
Confidence 34699999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cchHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHH
Q 018674 82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFA 161 (352)
Q Consensus 82 GI~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG 161 (352)
||+||||||||||||++.++.++|++.++||||+|++||++|+++|++||++++..+.++...+.+..+.+++++||++|
T Consensus 82 GI~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g 161 (474)
T PTZ00219 82 GISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFA 161 (474)
T ss_pred ccHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999999999999999865434433333444678899999999
Q ss_pred HHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcC
Q 018674 162 GIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQN 241 (352)
Q Consensus 162 s~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (352)
+++++||||++|||||+|||+||+|++||+++++|+.|+|.+.....+.+.+|.++.+++.+++++++.++++++++|.+
T Consensus 162 ~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~ 241 (474)
T PTZ00219 162 GIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPH 241 (474)
T ss_pred HHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcc
Confidence 99999999999999999999999999999999999999998876554557788877776655577888999999999999
Q ss_pred CccHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHH
Q 018674 242 LPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV 321 (352)
Q Consensus 242 lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~ 321 (352)
+||++.+++++++++++||+|++|||||++|+|.+|++++||+|+||+|+||+|||||++++|+++++++++.++++...
T Consensus 242 l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~ 321 (474)
T PTZ00219 242 LPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLI 321 (474)
T ss_pred cccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 99999989999999999999999999999999988999999999999999999999999999999999987766666656
Q ss_pred HhhhhccccccCCCccccceeEEEEEcCCC
Q 018674 322 NLLGKWKESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
+++++|.+.+.. |+++|++|++||++||+
T Consensus 322 ~~l~~~~~~~~~-~~~~~v~gl~~~l~~p~ 350 (474)
T PTZ00219 322 NLLGQWQEVEYS-GQSVPVGGLAYYLSPPN 350 (474)
T ss_pred ccccceeccccc-cccccchhHHhhcCCCc
Confidence 677777531100 34569999999999984
No 2
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-77 Score=574.97 Aligned_cols=349 Identities=76% Similarity=1.253 Sum_probs=337.8
Q ss_pred CCccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhc
Q 018674 2 GGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMEL 81 (352)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsL 81 (352)
++|+||+|.+||+.+.+||++.|+||.++++|++||...+++|.+++|||++|+.++...||++|+|.++|++|+|+++|
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP~yw~RvilasnrgTLMel 80 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADPFYWMRVILASNRGTLMEL 80 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCcHHHHHHHHhcCCcchhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHH
Q 018674 82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFA 161 (352)
Q Consensus 82 GI~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG 161 (352)
|+.|++|+|.|||+|++.|+.+++.+.++||+.+|..||.+++++++.||..++++|+||..++.|....+++++||+..
T Consensus 81 GisPivtSglimQlLag~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~A 160 (476)
T KOG1373|consen 81 GISPIVTSGLIMQLLAGSKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFA 160 (476)
T ss_pred ccchhhHHHHHHHHHccCcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987788888899999999999
Q ss_pred HHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcC
Q 018674 162 GIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQN 241 (352)
Q Consensus 162 s~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (352)
+.+++.|||+++||||+|||+|++|++|||++++|+.|||.++....+.|++|++++++|.+.++++|.+|+++||+|++
T Consensus 161 giiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rqn 240 (476)
T KOG1373|consen 161 GIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQN 240 (476)
T ss_pred hHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHH
Q 018674 242 LPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV 321 (352)
Q Consensus 242 lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~ 321 (352)
|||+..++++++++++++|+|..|+++|++++|.||+.+.||||+.|++.||+|+.|++.++...++|++...+|+|.++
T Consensus 241 LPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v 320 (476)
T KOG1373|consen 241 LPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLV 320 (476)
T ss_pred ccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccCCCccccceeEEEEEcCCC
Q 018674 322 NLLGKWKESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
+.+|.|.+.+++ +++.|++|+.||++||.
T Consensus 321 ~llG~w~~~~~~-~~~~p~~glsyy~~pp~ 349 (476)
T KOG1373|consen 321 RLLGVWEDSEGG-GRSMPVSGLSYYITPPE 349 (476)
T ss_pred EEEeeeecCCCC-cccccccceeEecCChH
Confidence 999999876632 35679999999999995
No 3
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=7.8e-74 Score=580.04 Aligned_cols=328 Identities=39% Similarity=0.691 Sum_probs=285.8
Q ss_pred cchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccch
Q 018674 5 FRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI~ 84 (352)
|.++|.+||+.+++||+++|+|++++|+|++||++++++||+|++||+||+|.++ .|++.+++.++|++++|+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~~l~~l~~~~gg~~~slf~LGI~ 79 (462)
T PRK08568 1 MGFLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QDLFELLRIIFAGSFGTLLQLGIG 79 (462)
T ss_pred CCHHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-ccHHHHHHHHhCCcccchHHhCcH
Confidence 4689999999999999999999999999999999999999999999999999876 678888888889999999999999
Q ss_pred HHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--ccchhHHHHHHHHHHHHH
Q 018674 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVN--QLGVGNAILIIVQLCFAG 162 (352)
Q Consensus 85 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~--~~~~~~~~~~vl~L~aGs 162 (352)
||||||||||++++.++.++|+++|+||||+|++||++|+++|++||.+++.++.++... ..+..+++++++||++|+
T Consensus 80 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt 159 (462)
T PRK08568 80 PIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGG 159 (462)
T ss_pred HHHHHHHHHHHHhhCchheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHH
Confidence 999999999999888888888888999999999999999999999999999865433211 124556788999999999
Q ss_pred HHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCC
Q 018674 163 IIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNL 242 (352)
Q Consensus 163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~l 242 (352)
+++|||||+||| ||+|||+|++|++|||++++|+++++.+ ..+.+.+|.++.+.+...+++.+..++ +|.++
T Consensus 160 ~i~~wL~E~Itk-~GiGnGiSliI~~gI~~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~----~r~~l 231 (462)
T PRK08568 160 ILIILLDELVSK-WGIGSGISLFILAGVSQTIFVGLFNWLT---GGQGLPVGFIPALFSAITSGNLTLALL----LTTRG 231 (462)
T ss_pred HHHHHHHHHHHh-cCcCcchHHHHHHHHHHHHHHHHhhhhc---ccCccccchHHHHHHHHhcCccchhhh----hcccc
Confidence 999999999999 9999999999999999999999988765 234578888777765444444444444 88999
Q ss_pred ccHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHH
Q 018674 243 PNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVN 322 (352)
Q Consensus 243 p~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~ 322 (352)
|+++.++++++++++++|+|++|||||+||+|.+|+++|+|+|+||+|+||+|||||++++|.++++++... . .+
T Consensus 232 ~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~----~-~~ 306 (462)
T PRK08568 232 LLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRL----G-IP 306 (462)
T ss_pred cHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhc----C-ch
Confidence 999999999999999999999999999999998899999999999999999999999999999999987432 1 35
Q ss_pred hhhhccccccCCCccccceeEEEEEcCCC
Q 018674 323 LLGKWKESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
++++|++.+ . .|+.++.||++||+
T Consensus 307 ~~~~~~~~~----~-~~~~~l~~~~~~p~ 330 (462)
T PRK08568 307 ILGTYDSSG----A-SPISGLAYYLSPPH 330 (462)
T ss_pred hhhhccccc----c-cchhHHHHHhCCCc
Confidence 777776533 1 37788889998875
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-67 Score=522.34 Aligned_cols=298 Identities=28% Similarity=0.432 Sum_probs=243.8
Q ss_pred hhhcchhhhccc-cccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHH-----HHh-hc--Ccccchhccch
Q 018674 14 FLAFLPEVQSAD-RKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMR-----VIL-AS--NRGTVMELGIT 84 (352)
Q Consensus 14 ~~~~lp~v~~p~-~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~-----~i~-a~--~~~SlfsLGI~ 84 (352)
..+.+|++.+|+ +.+++|||++||++++++||+|++||+||+|.++..|.+.+.+ |++ |+ +|+|+|+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~ 81 (436)
T COG0201 2 LLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIM 81 (436)
T ss_pred cchhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccH
Confidence 456889999986 7899999999999999999999999999999987766554444 444 55 99999999999
Q ss_pred HHHhHHHHHHHhc-cc-chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCccccchhHHHHHHHHH
Q 018674 85 PIVTSGLVMQLLA-GS-KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY----GSVNQLGVGNAILIIVQL 158 (352)
Q Consensus 85 PyItAsII~QLL~-~~-~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~----~~~~~~~~~~~~~~vl~L 158 (352)
||||||||||||+ .. +++|++||+|+||||+|++|||+|+++|++||.+++..+.+ +...+.+..++++++++|
T Consensus 82 PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L 161 (436)
T COG0201 82 PYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQL 161 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHH
Confidence 9999999999995 34 67779999999999999999999999999999999987542 111223467889999999
Q ss_pred HHHHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccch-HHHHHHHHHhcchhHHHHHHHH
Q 018674 159 CFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGA-VIALFHLLITRNDKVRALREAF 237 (352)
Q Consensus 159 ~aGs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~ 237 (352)
++||+++|||||+||| ||+|||+||+|++||+++++++++++..... .|. ...++.
T Consensus 162 ~~Gt~~lmwLgE~Itk-~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~------~~~~~~~~l~---------------- 218 (436)
T COG0201 162 TAGTMFLMWLGEQITK-RGIGNGISLIIFAGIVASLPSAIFGIIGALP------TGALFLSILF---------------- 218 (436)
T ss_pred HHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHhHHHHHHHHHHHh------cchhHHHHHH----------------
Confidence 9999999999999999 9999999999999999999777776432110 110 001100
Q ss_pred hhcCCccHHHHHHHHHHHHHHHhhcccEEEEeeeeec---cCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 018674 238 YRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN---ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRR 314 (352)
Q Consensus 238 ~~~~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~---~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~ 314 (352)
+++.++.++++++++||+|++|||||+||+| .+|+++|+|+|+|||||||+|||||++++|.+++++++..
T Consensus 219 ------~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~ 292 (436)
T COG0201 219 ------LLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNG 292 (436)
T ss_pred ------HHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 1567788889999999999999999999999 6899999999999999999999999999999999999621
Q ss_pred --cCchhHHHhhhhccccccCCCccccceeEEEE
Q 018674 315 --YSGNFFVNLLGKWKESEYSGGQYVPVGGIAYY 346 (352)
Q Consensus 315 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~y~ 346 (352)
.....|...+.++..++ +|+|..+|.
T Consensus 293 ~~~~~~~~~~~i~~~l~~~------~~~y~~~y~ 320 (436)
T COG0201 293 GLAYYLSPLTSISDALSPG------SPVYIALYV 320 (436)
T ss_pred CccccccchhhHHHhccCC------cHHHHHHHH
Confidence 11123555566666554 577777664
No 5
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=9.1e-63 Score=495.35 Aligned_cols=285 Identities=20% Similarity=0.358 Sum_probs=229.1
Q ss_pred hhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hHHHHHHHh---hcCcccchhccchHHHhHH
Q 018674 21 VQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTSG 90 (352)
Q Consensus 21 v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~-------~~~~l~~i~---a~~~~SlfsLGI~PyItAs 90 (352)
..+.++++|+|||++||++++++||+|++||+||+|.++..| ++.++++++ |.+|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAs 84 (426)
T PRK09204 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITAS 84 (426)
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHH
Confidence 345567899999999999999999999999999999876532 577888877 4599999999999999999
Q ss_pred HHHHHhccc--chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcC---Cc-cccchhHHHHHHHHHHHHH
Q 018674 91 LVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSG--MYG---SV-NQLGVGNAILIIVQLCFAG 162 (352)
Q Consensus 91 II~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~--~~~---~~-~~~~~~~~~~~vl~L~aGs 162 (352)
|+||+|++. +++++|||||+||||+|++||++|+++|++||+++++.. .++ .. .+++..++++++++|++||
T Consensus 85 Ii~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs 164 (426)
T PRK09204 85 IIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGT 164 (426)
T ss_pred HHHHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHH
Confidence 999999976 999999999999999999999999999999999988542 221 11 1223456788999999999
Q ss_pred HHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCC
Q 018674 163 IIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNL 242 (352)
Q Consensus 163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~l 242 (352)
++++||||+||| ||+|||+|++|++||+++++|.+.+..+... .+. ......
T Consensus 165 ~i~~wL~e~It~-~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~------~~~-~~~~~~-------------------- 216 (426)
T PRK09204 165 MFLMWLGEQITE-RGIGNGISLIIFAGIVAGLPSAIGQTFELAR------TGS-LSILVF-------------------- 216 (426)
T ss_pred HHHHHHHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHhc------cCc-chHHHH--------------------
Confidence 999999999999 9999999999999999999665543322110 010 000000
Q ss_pred ccHHHHHHHHHHHHHHHhhcccEEEEeeeeecc-------CCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhc
Q 018674 243 PNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRY 315 (352)
Q Consensus 243 p~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~-------~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~ 315 (352)
++.+++++++++++||+|++|||||+||+|. +++++|+|+|+||+|+||+|||+|++++|.+++++ +
T Consensus 217 --~~~~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~----~ 290 (426)
T PRK09204 217 --LLLIVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQF----F 290 (426)
T ss_pred --HHHHHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHh----c
Confidence 3456667888899999999999999999873 34789999999999999999999999999999988 2
Q ss_pred CchhHHHhhhhccccccCCCccccceeEEE
Q 018674 316 SGNFFVNLLGKWKESEYSGGQYVPVGGIAY 345 (352)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~y 345 (352)
+++.|.+++..+++++ +|+|.++|
T Consensus 291 ~~~~~~~~~~~~~~~~------~~~~~~~y 314 (426)
T PRK09204 291 GSGSWLQWIANYLSPG------SPLYILLY 314 (426)
T ss_pred CchHHHHHHHHHhCCC------ChHHHHHH
Confidence 3333556666665543 46666655
No 6
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=3.1e-62 Score=489.76 Aligned_cols=260 Identities=33% Similarity=0.531 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHHcccccCCCccCCCCCCh--------HHHHHHHhhcCcccchhccchHHHhHHHHHHHhcc--cc
Q 018674 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADP--------FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAG--SK 100 (352)
Q Consensus 31 ~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~--------~~~l~~i~a~~~~SlfsLGI~PyItAsII~QLL~~--~~ 100 (352)
|||++||++++++||+|++||+||+|.++.+|+ +.+++...|++|+|+|+|||+|||||||+|||+++ .+
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 589999999999999999999999999866543 33333333679999999999999999999999976 44
Q ss_pred h-hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhccCcC
Q 018674 101 I-IEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLG 179 (352)
Q Consensus 101 l-~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~wL~e~it~g~GiG 179 (352)
. ++.+||+|+||||+|++||++|+++|++||.+++..+.++...+.+..++++++++|++|+++++||||+||| ||+|
T Consensus 81 ~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~-~GiG 159 (410)
T TIGR00967 81 LLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIG 159 (410)
T ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence 4 4556679999999999999999999999999998433333223334556788999999999999999999999 9999
Q ss_pred cchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Q 018674 180 SGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVI 259 (352)
Q Consensus 180 nGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~~~~v 259 (352)
||+|++|++||+++++|+++++..... ++.+.+.++++| +|+++.+++++++++++|
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v 216 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQ---------------------SKVRDLISFLQN--LPFLLYLIATIIVFAVVV 216 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhh---------------------hhccchhhHHHH--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999888776653210 011122334444 466788888999999999
Q ss_pred hhcccEEEEeeeeeccCC-----cCcccccccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 018674 260 YFQGFRVVLPVRSKNARG-----QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRR 314 (352)
Q Consensus 260 ~~~~~~~rIPi~~~~~~~-----~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~ 314 (352)
|+|++|||||+||+|.++ +++|+|+|+||+|+||+|||||++++|+++++++.+.
T Consensus 217 ~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~ 276 (410)
T TIGR00967 217 FVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSN 276 (410)
T ss_pred eeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999997544 7899999999999999999999999999999988553
No 7
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.1e-61 Score=485.15 Aligned_cols=285 Identities=21% Similarity=0.282 Sum_probs=216.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCC----ChHHHHHHHhhc---CcccchhccchHHHhHHHHHHHh
Q 018674 24 ADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA----DPFYWMRVILAS---NRGTVMELGITPIVTSGLVMQLL 96 (352)
Q Consensus 24 p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~----~~~~~l~~i~a~---~~~SlfsLGI~PyItAsII~QLL 96 (352)
.++++|+|||++||++++++||+|++||+||+|.++.+ +.+.++.++|++ +|+|+|+|||+|||||||+||||
T Consensus 8 ~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~QLL 87 (434)
T PRK12907 8 FMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQLL 87 (434)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhhhhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999986432 225566677743 89999999999999999999999
Q ss_pred ccc---chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-ccccchhHHHHHHHHHHHHHHHHHHHH
Q 018674 97 AGS---KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY---GS-VNQLGVGNAILIIVQLCFAGIIVICLD 169 (352)
Q Consensus 97 ~~~---~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~---~~-~~~~~~~~~~~~vl~L~aGs~~v~wL~ 169 (352)
++. ++++++||||+||||+|++|||+|+++|++||+++++.... +. ..+.++.+.++++++|++||+++||||
T Consensus 88 ~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL~ 167 (434)
T PRK12907 88 QMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLG 167 (434)
T ss_pred HhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 88889999999999999999999999999999998764110 10 112234456777899999999999999
Q ss_pred HhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhccccc--ccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHH
Q 018674 170 ELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRG--AEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTN 247 (352)
Q Consensus 170 e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~ 247 (352)
|+||| ||+|||+|++|++||++++ |..+.+... ....|.. .+. +.+ .+ ++.
T Consensus 168 e~It~-~GIGnGiSliI~~gIv~~~------p~~~~~~~~~~~~~~~~~-~~~----------~~~--------~~-~~~ 220 (434)
T PRK12907 168 EQITA-NGVGNGISMLIFAGLVAAI------PNVANQIYLQQFQNAGDQ-LFM----------HII--------KM-LLI 220 (434)
T ss_pred HHHhc-CCcCcccHHHHHHHHHHHH------HHHHHHHHHHHhhccCch-hhh----------hHH--------HH-HHH
Confidence 99999 9999999999999999999 544422100 0000100 000 000 00 233
Q ss_pred HHHHHHHHHHHHhhcccEEEEeeeeec-c------CC-cCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchh
Q 018674 248 LLATVLIFLIVIYFQGFRVVLPVRSKN-A------RG-QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNF 319 (352)
Q Consensus 248 ~~~~l~~~~~~v~~~~~~~rIPi~~~~-~------~~-~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~ 319 (352)
+++++++++++|++|++|||||+||+| + ++ +++|+|+|+|++||||+|||||++++|+++++++.. +.
T Consensus 221 ~~~~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~----~~ 296 (434)
T PRK12907 221 GLVILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPD----SS 296 (434)
T ss_pred HHHHHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCC----Ch
Confidence 444557778899999999999999985 2 23 568999999999999999999999999999998632 22
Q ss_pred HHHhhhhccccccCCCccccceeEEE
Q 018674 320 FVNLLGKWKESEYSGGQYVPVGGIAY 345 (352)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~l~y 345 (352)
+.+++.++++++ +|.|.++|
T Consensus 297 ~~~~~~~~~~~~------~~~~~~~y 316 (434)
T PRK12907 297 VSKWLVANLDFA------HPIGMTLY 316 (434)
T ss_pred HHHHHHHHcCCC------CcHHHHHH
Confidence 345666655543 35555554
No 8
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=1.2e-60 Score=478.99 Aligned_cols=260 Identities=22% Similarity=0.317 Sum_probs=215.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCC-----CChHHHHHHHhh---cCcccchhccchHHHhHHHHHH
Q 018674 23 SADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-----ADPFYWMRVILA---SNRGTVMELGITPIVTSGLVMQ 94 (352)
Q Consensus 23 ~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~-----~~~~~~l~~i~a---~~~~SlfsLGI~PyItAsII~Q 94 (352)
+.+|++|+|||++||++++++||+|+|||+||+|.++. +|++.++++++. .+|+|+|+|||+||||||||||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~Q 82 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQ 82 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHH
Confidence 34688999999999999999999999999999998763 367888888872 3789999999999999999999
Q ss_pred Hhccc--chhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 018674 95 LLAGS--KIIEVDNN-VREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDEL 171 (352)
Q Consensus 95 LL~~~--~l~~l~~~-~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~wL~e~ 171 (352)
+++.. ++++++|| ||+||||+|++||++|+++|++||.+++.+.. ....+.+..+.++++++|++|+++++||||+
T Consensus 83 Ll~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~-~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~ 161 (417)
T CHL00161 83 LLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLK-PYLFNWNLLLALEIVLALTSGSMIVLWLSEL 161 (417)
T ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 88999988 99999999999999999999999999987521 1111223446788999999999999999999
Q ss_pred hhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHH
Q 018674 172 LQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLAT 251 (352)
Q Consensus 172 it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~~~ 251 (352)
||| ||+|||+|++|++||++++ |..+...... .+++...+. .++.++++
T Consensus 162 it~-~GiGnGiSliI~~~I~~~~------p~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~~ 210 (417)
T CHL00161 162 ITE-KGLGNGSSLLIFFNIVSNL------PKLLQSLLFS---------------LSANITILS---------ILLLLFLF 210 (417)
T ss_pred HHh-cCcCcchHHHHHHHHHHHH------HHHHHHHHHH---------------hccchhHHH---------HHHHHHHH
Confidence 999 9999999999999999999 5443211100 000000000 03445567
Q ss_pred HHHHHHHHhhcccEEEEeeeeeccCC------cCcccccccccccchhHHHHHHHHHHHHHHHHHHhhh
Q 018674 252 VLIFLIVIYFQGFRVVLPVRSKNARG------QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRR 314 (352)
Q Consensus 252 l~~~~~~v~~~~~~~rIPi~~~~~~~------~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~ 314 (352)
++++++++++|++|||||+||+|.++ +++|+|+|+||+|+||+|||||++++|+++++++++.
T Consensus 211 ~~vi~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~ 279 (417)
T CHL00161 211 FITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQ 279 (417)
T ss_pred HHHHHHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999987543 7899999999999999999999999999999988553
No 9
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=5.8e-58 Score=457.11 Aligned_cols=272 Identities=18% Similarity=0.251 Sum_probs=211.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCCh---HHHHHHHh-h--cCcccchhccchHHHhHHHHHHHhc
Q 018674 24 ADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP---FYWMRVIL-A--SNRGTVMELGITPIVTSGLVMQLLA 97 (352)
Q Consensus 24 p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~---~~~l~~i~-a--~~~~SlfsLGI~PyItAsII~QLL~ 97 (352)
-++++|+|||++||++++++||+|+|||+||+|.++.+|+ +..+.+.+ | .+|+|+|+|||+|||||||+||||+
T Consensus 6 ~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~QLL~ 85 (404)
T PRK12417 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQLFS 85 (404)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCccchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999866443 44455555 2 3789999999999999999999999
Q ss_pred ccchhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018674 98 GSKIIEVDNNV--REDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 175 (352)
Q Consensus 98 ~~~l~~l~~~~--~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~wL~e~it~g 175 (352)
..++.++|++. |+||+ |||+|+++|++||++++.+..+.. +....++++++++|++|++++|||||+|||
T Consensus 86 ~~~~~~l~~~~kee~gr~-----~r~ltl~la~iQs~~~~~~~~~~~--~~~~~~~~~~~l~L~aGt~~~~WL~E~it~- 157 (404)
T PRK12417 86 YRKRDGLMKQTIEEQHYR-----ERILTLIIAVIQSLAVILSLPSKE--RISQTNILLNTLILVTGTMFLVWLSDLNAR- 157 (404)
T ss_pred hCCCcchhhcChHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 87655555542 55553 699999999999999987643221 111236778999999999999999999999
Q ss_pred cCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHH
Q 018674 176 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIF 255 (352)
Q Consensus 176 ~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~ 255 (352)
||+| |+|++|++|||++++++.++.... . .... ...+.+.++++
T Consensus 158 ~GIG-G~SliI~~~Iv~~~p~~~~~~~~~---------~--~~~~------------------------~~~~~~~~~~i 201 (404)
T PRK12417 158 YGIG-GPMPIVLVSMIKSIPQDVIEYIDA---------S--HIVI------------------------ILLILLVIITL 201 (404)
T ss_pred CCcc-HHHHHHHHHHHHHHHHHHHHHHHH---------H--HHHH------------------------HHHHHHHHHHH
Confidence 9999 999999999999995554432100 0 0000 22333344556
Q ss_pred HHHHhhcccEEEEeeeeecc--C-CcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHHhhhhcccccc
Q 018674 256 LIVIYFQGFRVVLPVRSKNA--R-GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEY 332 (352)
Q Consensus 256 ~~~v~~~~~~~rIPi~~~~~--~-~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~ 332 (352)
++++++|++|||||+||++. + .+++|+|+|+|+||+||+|||||++++|+++++++++.++++.+.++...+++.+
T Consensus 202 ~~~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~- 280 (404)
T PRK12417 202 FFLYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFG- 280 (404)
T ss_pred HHHHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCC-
Confidence 67999999999999999763 2 3678999999999999999999999999999999877777776667665555443
Q ss_pred CCCccccceeEEE
Q 018674 333 SGGQYVPVGGIAY 345 (352)
Q Consensus 333 ~~~~~~~~~~l~y 345 (352)
+|.|.++|
T Consensus 281 -----~~~~~~~y 288 (404)
T PRK12417 281 -----SPLGVTVY 288 (404)
T ss_pred -----CcHHHHHH
Confidence 46665554
No 10
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=7.9e-54 Score=426.94 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=196.2
Q ss_pred chHHHHHHHHHHHHHHHHcccccCCCccCCCC------CChHHHHHHHhhc--CcccchhccchHHHhHHHHHHHhcccc
Q 018674 29 PFREKVIYTVISLFIFLVCSQLPLYGIHSTTG------ADPFYWMRVILAS--NRGTVMELGITPIVTSGLVMQLLAGSK 100 (352)
Q Consensus 29 ~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~------~~~~~~l~~i~a~--~~~SlfsLGI~PyItAsII~QLL~~~~ 100 (352)
.+|||++||++++++||+|++||+||+|.++. .|++.+++.++|+ +|+|+|||||+|||||||+||+|+..+
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 37999999999999999999999999998752 3566666666776 466999999999999999999998865
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhccCcCc
Q 018674 101 IIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180 (352)
Q Consensus 101 l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~wL~e~it~g~GiGn 180 (352)
+.++|+..+|+| ++.||++|+++|++||.+++++..+.. +....+..+++++|++|+++++||||+||| ||+|
T Consensus 81 ~~~l~~~~~~~~---~~~tr~ltl~~a~iQs~~~~~~~~~~~--~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~-~GiG- 153 (395)
T TIGR02920 81 SDGFDAQSPKEQ---QYRERFLTLIIAIIQGLAIIHSFTNKN--GLSDFNMLLATLILVTGTCLLVWLADLNAK-YGIG- 153 (395)
T ss_pred CcchhhhCHHHh---hHHHHHHHHHHHHHHHHHHHHHhhccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-
Confidence 655555443333 335999999999999999987643221 111235677899999999999999999999 9999
Q ss_pred chHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHHh
Q 018674 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIY 260 (352)
Q Consensus 181 GiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~~~~v~ 260 (352)
|+|++|++||+++++++.++..+. ..+. .+ ++..++++++++++++
T Consensus 154 G~sllI~~~I~s~~~~~~~~~~~~-------~~~~--~~-------------------------~~~~~~~~~~i~~~v~ 199 (395)
T TIGR02920 154 GSMPIVLVSMLKNIPSNVFELFQM-------SYIW--LI-------------------------ALLILLTLVALFLLAF 199 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-------chHH--HH-------------------------HHHHHHHHHHHHHHHh
Confidence 999999999999996665543221 0011 11 2333445566667999
Q ss_pred hcccEEEEeeeeecc--CC-cCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchh
Q 018674 261 FQGFRVVLPVRSKNA--RG-QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNF 319 (352)
Q Consensus 261 ~~~~~~rIPi~~~~~--~~-~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~ 319 (352)
+|++|||||++|+|. |+ +++|+|+|+||+|+||+||||+++++|+++++.+.+.++++.
T Consensus 200 ~~~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~ 261 (395)
T TIGR02920 200 IERAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSS 261 (395)
T ss_pred eecceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 999999999999873 43 678899999999999999999999999888777666555544
No 11
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=7.8e-49 Score=385.54 Aligned_cols=225 Identities=34% Similarity=0.584 Sum_probs=181.9
Q ss_pred cchhccchHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcc------ccchh
Q 018674 77 TVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLS-GMYGSVN------QLGVG 149 (352)
Q Consensus 77 SlfsLGI~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~-~~~~~~~------~~~~~ 149 (352)
|+|||||+|||||||+||++...+++++|||+|+||||++++||++|+++|++||++++.. ..++... +.+..
T Consensus 1 SlfsLGI~PyitAsIi~Qll~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLIIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSGFI 80 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHHSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTCHH
T ss_pred ChHhhccHHHHHHHHHHHHHhcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 7999999999999999999977799999999999999999999999999999999999964 2333211 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchh
Q 018674 150 NAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDK 229 (352)
Q Consensus 150 ~~~~~vl~L~aGs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 229 (352)
..++++++|++|+++++||||+||| ||+|||+|++|++||+++++|+..+..+..........+++.
T Consensus 81 ~~~~i~l~L~~G~~i~~wL~e~it~-~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~------------ 147 (346)
T PF00344_consen 81 NYLLIVLQLVAGSMILIWLSELITK-YGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALF------------ 147 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH------------
Confidence 6789999999999999999999999 999999999999999999966533221110000001111111
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhcccEEEEeeeeecc----CCcCcccccccccccchhHHHHHHHHHHHH
Q 018674 230 VRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA----RGQQGSYPIKLFYTSNMPIILQSALVSNLY 305 (352)
Q Consensus 230 ~~~l~~~~~~~~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~----~~~~~~~PiKln~aGvmPiIfassll~~p~ 305 (352)
.+..+++++++++++|++|++|||||+||.|. +++++|+|+|+||+|+||+||+++++++|+
T Consensus 148 --------------~l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p~ 213 (346)
T PF00344_consen 148 --------------LLIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQ 213 (346)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHHH
Confidence 05677778888999999999999999999998 788999999999999999999999999999
Q ss_pred HHHHHHhhhcCchhHHHhhhhcc
Q 018674 306 FISQLMYRRYSGNFFVNLLGKWK 328 (352)
Q Consensus 306 ~i~~~l~~~~~~~~~~~~l~~~~ 328 (352)
++++++++.++++...+.+..++
T Consensus 214 ~i~~~l~~~~~~~~~~~~i~~~~ 236 (346)
T PF00344_consen 214 YIAQFLNSQFPNNWLVSGIAYYF 236 (346)
T ss_dssp HHHHHCTTCSCCSCCSSCCHHHT
T ss_pred HHHHhccCCCccccHHHHHHHHh
Confidence 99999987665433333333333
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=97.95 E-value=4.4e-06 Score=55.51 Aligned_cols=35 Identities=57% Similarity=1.233 Sum_probs=30.8
Q ss_pred HHHHHcccccCCCccCCCCCChHHHHHHHhhcCcc
Q 018674 42 FIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRG 76 (352)
Q Consensus 42 ~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~ 76 (352)
++|.++++|||+|++.....|++.++|.++|++++
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D~f~~~R~i~As~~G 35 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSDPFYWLRAIFASNRG 35 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSCCHTTTHHHHTSSTT
T ss_pred CEEEEeeCCccccccCCCcCCHHHHHHHHHcccCC
Confidence 58999999999999777889999999999999875
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=72.47 E-value=7 Score=32.30 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=29.3
Q ss_pred hHHHhHHHHHHHhcccch---hhhccccHHHHHHHHHHHHHHHHHHHH
Q 018674 84 TPIVTSGLVMQLLAGSKI---IEVDNNVREDRALLNGAQKLLGIIIAI 128 (352)
Q Consensus 84 ~PyItAsII~QLL~~~~l---~~l~~~~~~gr~k~~~~tr~ltl~la~ 128 (352)
.=.++.||++|++.+.-+ .+.+.+.++.+++.++...+.+.+..+
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v~i 92 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILVFI 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999998722 234455556666677666666555433
No 14
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=22.19 E-value=3.7e+02 Score=22.54 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CC--ccccc---hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 018674 118 AQKLLGIIIAIGEAVAYVLSGMY-GS--VNQLG---VGNAILIIVQLCFAGIIVICLDELLQ 173 (352)
Q Consensus 118 ~tr~ltl~la~iQa~~~~~~~~~-~~--~~~~~---~~~~~~~vl~L~aGs~~v~wL~e~it 173 (352)
.+-...+++|++|.......... +. ...++ ..+.+.+++..++|++-+|+=.+.++
T Consensus 47 ~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~m 108 (111)
T COG3125 47 VTLIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNM 108 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 45556788999999886643221 21 11122 24566778889999999988766554
No 15
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.36 E-value=5e+02 Score=21.61 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCc--cccc---hhHHHHHHHHHHHHHHHHHH
Q 018674 118 AQKLLGIIIAIGEAVAYVLSGMY-GSV--NQLG---VGNAILIIVQLCFAGIIVIC 167 (352)
Q Consensus 118 ~tr~ltl~la~iQa~~~~~~~~~-~~~--~~~~---~~~~~~~vl~L~aGs~~v~w 167 (352)
.+...-+++|++|.......... +.. ..++ ..+.+.+++.++.||.-+|+
T Consensus 45 ~~~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 45 VILGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556677899999887654221 211 1122 23556678889999988887
Done!