Query 018674
Match_columns 352
No_of_seqs 163 out of 1068
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_A Protein transport prote 100.0 9.2E-82 3.1E-86 637.7 16.4 347 4-351 2-349 (476)
2 2ww9_A SEC sixty-one protein h 100.0 1.1E-81 3.8E-86 638.6 13.1 343 3-351 2-354 (490)
3 3mp7_A Preprotein translocase 100.0 8.2E-78 2.8E-82 609.2 14.3 328 5-351 1-336 (482)
4 1rh5_A Preprotein translocase 100.0 2.3E-74 7.9E-79 578.1 26.6 304 8-351 1-304 (436)
5 2zjs_Y Preprotein translocase 100.0 1.3E-66 4.3E-71 521.4 18.9 286 20-345 4-315 (434)
6 3dl8_G Preprotein translocase 100.0 4.1E-67 1.4E-71 525.0 14.8 286 19-345 3-315 (429)
7 3din_C Preprotein translocase 100.0 9.2E-67 3.2E-71 522.4 16.2 259 19-311 3-290 (431)
8 3j01_A Preprotein translocase 100.0 2.5E-65 8.7E-70 512.5 15.6 282 27-345 9-314 (435)
9 1zl8_A LIN-7; heterodimer, alp 11.8 1.1E+02 0.0039 21.1 1.8 22 101-122 16-37 (53)
10 3mp7_A Preprotein translocase 10.6 2.6E+02 0.0088 27.8 4.9 24 169-195 424-447 (482)
No 1
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=9.2e-82 Score=637.66 Aligned_cols=347 Identities=66% Similarity=1.151 Sum_probs=307.5
Q ss_pred ccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccc
Q 018674 4 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI 83 (352)
Q Consensus 4 ~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI 83 (352)
++|++|.+||+.+++|||++|++|+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++|+|+|+|||
T Consensus 2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI 81 (476)
T 2wwb_A 2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI 81 (476)
T ss_dssp CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence 38999999999999999999999999999999999999999999999999999988788899999999999999999999
Q ss_pred hHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHH
Q 018674 84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGI 163 (352)
Q Consensus 84 ~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~ 163 (352)
+||||||||||||++.++.+.+++.+ ||||+|++|||+|+++|++||.+++.++.++...+.+..+.+++++||++|++
T Consensus 82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~ 160 (476)
T 2wwb_A 82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL 160 (476)
T ss_dssp THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence 99999999999998777777666655 99999999999999999999999988555554334456677899999999999
Q ss_pred HHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCc
Q 018674 164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243 (352)
Q Consensus 164 ~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 243 (352)
++|||||+||||||+|||+|++|++|||++++|+.|+|.......+.+++|.+..+++.+.++.++.++++++++|.++|
T Consensus 161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~ 240 (476)
T 2wwb_A 161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240 (476)
T ss_dssp HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence 99999999999999999999999999999999999999876555556778877667776666778888999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHHh
Q 018674 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL 323 (352)
Q Consensus 244 ~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~ 323 (352)
|++.+++++++++++||+|++||||||||+|++|+++|+|+|+||+||||+|||||++++|+++++++++.++++.+.++
T Consensus 241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~ 320 (476)
T 2wwb_A 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL 320 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence 98888888999999999999999999999999999999999999999999999999999999999988766565566677
Q ss_pred hhhccccc-cCCCccccceeEEEEEcCCC
Q 018674 324 LGKWKESE-YSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 324 l~~~~~~~-~~~~~~~~~~~l~y~~~pp~ 351 (352)
++.|.+.+ +..++++|++|++||++||+
T Consensus 321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~ 349 (476)
T 2wwb_A 321 LGTWSDTSSGGPARAYPVGGLCHYLSPPE 349 (476)
T ss_dssp HCSSSTTCSCTTSSSCCSSSHHHHTSCCS
T ss_pred hhhhhhccccccccccccHHHHHHcCCcc
Confidence 77775321 00124579999999999975
No 2
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=1.1e-81 Score=638.57 Aligned_cols=343 Identities=31% Similarity=0.583 Sum_probs=298.7
Q ss_pred CccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCC---CCChHHHHHHHhhcCcccch
Q 018674 3 GGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTT---GADPFYWMRVILASNRGTVM 79 (352)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~---~~~~~~~l~~i~a~~~~Slf 79 (352)
+++|++|.+||+.+++|||++|+|++|+|||++||++++++||+ +|||+||+|.++ ..|++.+++.++|++|+|+|
T Consensus 2 ~~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~~~~~~~~~~~~~~a~~~~sif 80 (490)
T 2ww9_A 2 SGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTLL 80 (490)
T ss_dssp CCSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTTCSSCCCTTTHHHHTCCSSSTT
T ss_pred ccchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHhcccCHHHHHHHHHcccccHHH
Confidence 45999999999999999999999999999999999999999999 999999999973 35677777777799999999
Q ss_pred hccchHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHH
Q 018674 80 ELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLC 159 (352)
Q Consensus 80 sLGI~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~ 159 (352)
+|||+||||||||||||++.++.++|||+|+||||+|++|||+|+++|++||++++.++.++ .+.+..+.+++++||+
T Consensus 81 aLGI~PyItASII~QLL~g~~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L~ 158 (490)
T 2ww9_A 81 EFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQLV 158 (490)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhhCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 99999999999999999887888999999999999999999999999999999999865444 2345566788999999
Q ss_pred HHHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccc--cccchHHHHHHHH-HhcchhHHHHHHH
Q 018674 160 FAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITRNDKVRALREA 236 (352)
Q Consensus 160 aGs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~--~~~g~~~~~~~~~-~~~~~~~~~l~~~ 236 (352)
+|++++|||||+||||||+|||+||+|++|||++++|++++|.......+. +++|+++.+++.+ .+++++.+++.++
T Consensus 159 ~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~ 238 (490)
T 2ww9_A 159 GAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISA 238 (490)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhH
Confidence 999999999999999999999999999999999999999999766544333 7789887776655 3454555566688
Q ss_pred HhhcCCccHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHH----HHh
Q 018674 237 FYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ----LMY 312 (352)
Q Consensus 237 ~~~~~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~----~l~ 312 (352)
++|.++|+++.+++++++++++||+|++||||||||+|.+|+++|+|+|+||+||||+|||||++++|+++++ +++
T Consensus 239 ~~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~ 318 (490)
T 2ww9_A 239 FNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVA 318 (490)
T ss_dssp CSSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 665
Q ss_pred hhcCchhHHHhhhhccccccCCCccccceeEEEEEcCCC
Q 018674 313 RRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
+.++++...++++.|.+.+ ++++|+++++||++||+
T Consensus 319 ~~~~~~~~~~~lg~~~~~~---~~~~~~~~~~~~l~~p~ 354 (490)
T 2ww9_A 319 KNEPTHIICKIMGHYENAN---NLLAVPTFPLSLLAPPT 354 (490)
T ss_dssp HCCCCSSSCTTSBCCSCCS---SSSCSCSSBSCCSSCCC
T ss_pred ccCCCccccccccchhccc---cccchhHHHHHHhCCcc
Confidence 4433433334556664323 34578999999999974
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=8.2e-78 Score=609.17 Aligned_cols=328 Identities=34% Similarity=0.685 Sum_probs=225.5
Q ss_pred cchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccch
Q 018674 5 FRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (352)
Q Consensus 5 ~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI~ 84 (352)
|+++|.+||+.+++|||++|+|++|+|||++||++++++||+|++||+||+|.+. .|.+.+++.++|++|+|+|+|||+
T Consensus 1 ~~~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~-~~~~~~l~~~~Gg~~~SifaLGI~ 79 (482)
T 3mp7_A 1 MGARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIG 79 (482)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC-CCSCSSTTTTTCSCTTBTTSSTTH
T ss_pred CCHHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc-ccHHHHHHHhcCCCcccHHHHhhH
Confidence 5789999999999999999999999999999999999999999999999999864 466777777778899999999999
Q ss_pred HHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-ccchhHHHHHHHHHHHHHH
Q 018674 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVN-QLGVGNAILIIVQLCFAGI 163 (352)
Q Consensus 85 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~-~~~~~~~~~~vl~L~aGs~ 163 (352)
||||||||||||++.+++++|||+|+||||+|++|||+|+++|++||.+++.++.++... ..+..+.+++++||++|++
T Consensus 80 PyITASII~QLL~~~~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~ 159 (482)
T 3mp7_A 80 PIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGI 159 (482)
T ss_dssp HHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875554321 1234567899999999999
Q ss_pred HHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhccc-----ccccccchHHHHHHHHHhcchhHHHHHHHHh
Q 018674 164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSG-----RGAEFEGAVIALFHLLITRNDKVRALREAFY 238 (352)
Q Consensus 164 ~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 238 (352)
++|||||+||| ||+|||+|++|++|||++++|+++++.+.... .+.|++|.++.+++.+. .+++.++++
T Consensus 160 ~lmwL~E~It~-~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~-----~~~l~~~~~ 233 (482)
T 3mp7_A 160 VLIILDELVSK-WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHIL-----KGDLWGAIY 233 (482)
T ss_dssp HHHHHHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHH-----HCCSCSSCC
T ss_pred HHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHh-----cchhhHHHh
Confidence 99999999999 99999999999999999999999988543211 13466888776665442 245667788
Q ss_pred hcCCc--cHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcC
Q 018674 239 RQNLP--NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYS 316 (352)
Q Consensus 239 ~~~lp--~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~ 316 (352)
| ++| +++.+++++++++++||+|++||||||||+|++ +++|+|+|+|||||||+|||||++++|+++++++++.
T Consensus 234 ~-~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~-- 309 (482)
T 3mp7_A 234 R-GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL-- 309 (482)
T ss_dssp C-SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred h-ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc--
Confidence 8 888 899999999999999999999999999999977 8999999999999999999999999999999988532
Q ss_pred chhHHHhhhhccccccCCCccccceeEEEEEcCCC
Q 018674 317 GNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
..+++++|...+ + +|+++++||++||+
T Consensus 310 ---~~~~l~~~~~~~---~--~~~~g~~~~l~p~~ 336 (482)
T 3mp7_A 310 ---GHPWLGRFDPTT---G--SPISGFVLYVIPPR 336 (482)
T ss_dssp ---SCCSSBCCCCTT---S--CCCCBSGGGSCCCS
T ss_pred ---cchhhhhhcccc---c--ccchhHHHHhCCcc
Confidence 234677775433 3 58999999999985
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=2.3e-74 Score=578.08 Aligned_cols=304 Identities=39% Similarity=0.704 Sum_probs=261.7
Q ss_pred HHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccchHHH
Q 018674 8 LHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIV 87 (352)
Q Consensus 8 ~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI~PyI 87 (352)
+|.+||+.+++|||++|+|++|+|||++||++++++||+|+|||+||+|.++. |.+.+++.++|++|+|+|+|||+|||
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-~~~~~~~~~~a~~~~sifaLGI~PyI 79 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTITASRIGTLITLGIGPIV 79 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-SCCTTHHHHHTCCTTBTTTTTTHHHH
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHhhccccchHHHHccHHHH
Confidence 57899999999999999999999999999999999999999999999999654 56666666678999999999999999
Q ss_pred hHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHH
Q 018674 88 TSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVIC 167 (352)
Q Consensus 88 tAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~w 167 (352)
|||||||||++.++.++|||||+||||+|++|||+|+++|++||.+++.++.+. +.+..+.++++++|++|++++||
T Consensus 80 tAsII~QLL~g~~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g~~~---~~~~~~~~~~vl~L~~Gt~~lmw 156 (436)
T 1rh5_A 80 TAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIY 156 (436)
T ss_dssp HHHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999877888999999999999999999999999999999999864433 23455678899999999999999
Q ss_pred HHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHH
Q 018674 168 LDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTN 247 (352)
Q Consensus 168 L~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~ 247 (352)
|||+||| ||+|||+|++|++|||++++|+.++|. |+++++++.+.++.+ +..+++.
T Consensus 157 L~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~-----------G~i~~~~~~~~~~~~------------~~~~l~~ 212 (436)
T 1rh5_A 157 LDEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQGVP------------NIEYIAP 212 (436)
T ss_dssp HHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTTCC------------CGGGTHH
T ss_pred HHHHHHh-cCcccccHHHHHHHHHHHHHHHHhccc-----------chHHHHHHHHhcccc------------hHHHHHH
Confidence 9999999 999999999999999999988887764 666665543322211 1112456
Q ss_pred HHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHHhhhhc
Q 018674 248 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKW 327 (352)
Q Consensus 248 ~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~ 327 (352)
+++++++++++||+|++||||||||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++. +. ++++.|
T Consensus 213 l~~~l~v~~~vV~~~~~~rrIPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~--~~---~~~g~~ 287 (436)
T 1rh5_A 213 IIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM--GI---PILGHY 287 (436)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT--SC---CTTCCB
T ss_pred HHHHHHHHHHHHhhcceEEEEEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc--Cc---chhhhc
Confidence 6778888999999999999999999999899999999999999999999999999999999987532 11 256666
Q ss_pred cccccCCCccccceeEEEEEcCCC
Q 018674 328 KESEYSGGQYVPVGGIAYYITAPS 351 (352)
Q Consensus 328 ~~~~~~~~~~~~~~~l~y~~~pp~ 351 (352)
. + + +|++|++||++||+
T Consensus 288 ~--~---~--~~~~gl~yyl~pp~ 304 (436)
T 1rh5_A 288 E--G---G--RAVDGIAYYLSTPY 304 (436)
T ss_dssp C--S---S--SBSSSTTGGGCCCC
T ss_pred c--c---c--cccccchhhcCChh
Confidence 3 2 2 69999999999986
No 5
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=1.3e-66 Score=521.44 Aligned_cols=286 Identities=19% Similarity=0.261 Sum_probs=228.4
Q ss_pred hhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hHHHHHHHh-h--cCcccchhccchHHHhH
Q 018674 20 EVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL-A--SNRGTVMELGITPIVTS 89 (352)
Q Consensus 20 ~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~-------~~~~l~~i~-a--~~~~SlfsLGI~PyItA 89 (352)
++++.+|++|+|||++||++++++||+|+|||+||+|.++.+| ++..+.+++ | ++|+|+|+|||+|||||
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItA 83 (434)
T 2zjs_Y 4 AFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA 83 (434)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH
T ss_pred HHHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHH
Confidence 3456788999999999999999999999999999999876543 455555555 3 47999999999999999
Q ss_pred HHHHHHhccc--chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCC--ccc--cchhHHHHHHHHHHH
Q 018674 90 GLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSG---MYGS--VNQ--LGVGNAILIIVQLCF 160 (352)
Q Consensus 90 sII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~---~~~~--~~~--~~~~~~~~~vl~L~a 160 (352)
|||||||+.. ++++++||||+||||++++|||+|+++|++||.+++.+. .++. ..+ .+..+.++++++|++
T Consensus 84 SII~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 9999999765 778999999999999999999999999999999999862 1231 123 455577889999999
Q ss_pred HHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhc
Q 018674 161 AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240 (352)
Q Consensus 161 Gs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (352)
||+++|||||+||| ||+|||+|++|++|||+++++...+..+.. .....+. ..+
T Consensus 164 Gt~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~~~---~~~~~~~-~~~--------------------- 217 (434)
T 2zjs_Y 164 GIALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIGLI---RTGEVNL-VAF--------------------- 217 (434)
T ss_dssp HHHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHHTT---TTTSSCH-HHH---------------------
T ss_pred HHHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHHHh---ccCcccH-HHH---------------------
Confidence 99999999999999 999999999999999999954332221110 0000111 111
Q ss_pred CCccHHHHHHHHHHHHHHHhhcccEEEEeeeeecc---C----CcCcccccccccccchhHHHHHHHHHHHHHHHHHHhh
Q 018674 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA---R----GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYR 313 (352)
Q Consensus 241 ~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~---~----~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~ 313 (352)
++.+++++++++++||+|++||||||||+|. | |+++|+|+|+||+||||+|||||++++|+++++++.
T Consensus 218 ----~~~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~- 292 (434)
T 2zjs_Y 218 ----LFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQ- 292 (434)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCT-
T ss_pred ----HHHHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhc-
Confidence 3456677888899999999999999999873 2 789999999999999999999999999999999664
Q ss_pred hcCchhHHHhhhhccccccCCCccccceeEEE
Q 018674 314 RYSGNFFVNLLGKWKESEYSGGQYVPVGGIAY 345 (352)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~y 345 (352)
++ .|.+++..|++++ +|+|.++|
T Consensus 293 --~~-~~~~~~~~~l~~~------~~~y~~~y 315 (434)
T 2zjs_Y 293 --DN-PVLQGIANFFNPT------RPSGLFIE 315 (434)
T ss_dssp --TC-HHHHHHHHHHCSS------SHHHHHHH
T ss_pred --cc-hHHHHHHHHcCCC------ChHHHHHH
Confidence 22 3666666666554 46666555
No 6
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=4.1e-67 Score=524.97 Aligned_cols=286 Identities=19% Similarity=0.284 Sum_probs=227.0
Q ss_pred hhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC--------hHHHHHHHhh--cCcccchhccchHHHh
Q 018674 19 PEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD--------PFYWMRVILA--SNRGTVMELGITPIVT 88 (352)
Q Consensus 19 p~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~--------~~~~l~~i~a--~~~~SlfsLGI~PyIt 88 (352)
.++++.+|++|+|||++||++++++||+|+|||+||+|.++.++ .+.+++.++| ++|+|+|||||+||||
T Consensus 3 ~~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyIt 82 (429)
T 3dl8_G 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYIS 82 (429)
T ss_dssp -----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHH
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHH
Confidence 35678899999999999999999999999999999999976632 2222332334 4899999999999999
Q ss_pred HHHHHHHhccc--chhhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCccccchhHHHHHHHHH
Q 018674 89 SGLVMQLLAGS--KIIEVDN-NVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY-------GSVNQLGVGNAILIIVQL 158 (352)
Q Consensus 89 AsII~QLL~~~--~l~~l~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~-------~~~~~~~~~~~~~~vl~L 158 (352)
||||||||+.. +++|++| |||+||||++++|||+|+++|++||.+++.++.+ +...+.+..+.++++++|
T Consensus 83 AsII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L 162 (429)
T 3dl8_G 83 ASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTL 162 (429)
T ss_dssp HHHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHH
Confidence 99999999998 9999999 9999999999999999999999999999876433 112234556788999999
Q ss_pred HHHHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHh
Q 018674 159 CFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFY 238 (352)
Q Consensus 159 ~aGs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 238 (352)
++|++++|||||+||| ||+|||+|++|++||+++++|+.+++...... ...+.+
T Consensus 163 ~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~---g~~~~~---------------------- 216 (429)
T 3dl8_G 163 VAGTMFLVWIADRITE-KGIGNGASLIIFAGIVANFPNAVIQFYEKVKT---GDIGPL---------------------- 216 (429)
T ss_dssp HHHHHHHHHHHHHHHH-HTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSC---SSSCTH----------------------
T ss_pred HHHHHHHHHHHHHHhh-cCcCcchHHHHHHHHHHHHHHHHHhHHHHhcC---CcchHH----------------------
Confidence 9999999999999999 99999999999999999998888777432210 112221
Q ss_pred hcCCccHHHHHHHHHHHHHHHhhcccEEEEeeeeec-c------CCcCcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 018674 239 RQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN-A------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLM 311 (352)
Q Consensus 239 ~~~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~-~------~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l 311 (352)
++++.+++++++++++||+|++||||||||+| . +|+++|+|+|+|||||||+|||||++++|+++++++
T Consensus 217 ----~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~ 292 (429)
T 3dl8_G 217 ----TLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFV 292 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHc
Confidence 12567778888999999999999999999986 3 578999999999999999999999999999999876
Q ss_pred hhhcCchhHHHhhhhccccccCCCccccceeEEE
Q 018674 312 YRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAY 345 (352)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~y 345 (352)
+ +.|.+++..|++++ +|+|.++|
T Consensus 293 ~-----~~~~~~~~~~l~~~------~~~y~~~y 315 (429)
T 3dl8_G 293 Q-----NPFIKVIADMFQPG------AIFYNFLY 315 (429)
T ss_dssp S-----SCCCCTTTTTTTTT------HHHHHHHH
T ss_pred c-----hHHHHHHHHHcCCC------chHHHHHH
Confidence 3 12444455555443 35555544
No 7
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=9.2e-67 Score=522.37 Aligned_cols=259 Identities=20% Similarity=0.269 Sum_probs=216.8
Q ss_pred hhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCC-------------ChHHHHHHHhhc--Ccccchhccc
Q 018674 19 PEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA-------------DPFYWMRVILAS--NRGTVMELGI 83 (352)
Q Consensus 19 p~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~-------------~~~~~l~~i~a~--~~~SlfsLGI 83 (352)
.++++.+|++|+|||++||++++++||+|+|||+||+|.++.+ |.+.+++.++|+ +|+|+|||||
T Consensus 3 ~~~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI 82 (431)
T 3din_C 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSV 82 (431)
T ss_dssp -----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSH
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhh
Confidence 3567889999999999999999999999999999999997642 334444445555 8999999999
Q ss_pred hHHHhHHHHHHHhccc--chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---c-cccc-hhHHHHHHH
Q 018674 84 TPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGS---V-NQLG-VGNAILIIV 156 (352)
Q Consensus 84 ~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~---~-~~~~-~~~~~~~vl 156 (352)
+||||||||||||+.. +++++|||+|+||||++++|||+|+++|++||.+++.++.++. . .+.+ ..+.+++++
T Consensus 83 ~PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 162 (431)
T 3din_C 83 TPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTM 162 (431)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHH
Confidence 9999999999999998 9999999999999999999999999999999999987643321 1 2334 567889999
Q ss_pred HHHHHHHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHH
Q 018674 157 QLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREA 236 (352)
Q Consensus 157 ~L~aGs~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~ 236 (352)
+|++|++++|||||+||| ||+|||+|++|++||+++++|+++++.. + ..|.+.
T Consensus 163 ~L~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~-----~--~~~~~~------------------- 215 (431)
T 3din_C 163 SMLAGTMFLLWLGERITE-KGIGNGISILIFAGIVARYPSYIRQAYL-----G--GLNLLE------------------- 215 (431)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHHSTTSSSCCSS-----C--CSCTHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHHHHHhc-----c--cccHHH-------------------
Confidence 999999999999999999 9999999999999999999877776632 1 123221
Q ss_pred HhhcCCccHHHHHHHHHHHHHHHhhcccEEEEeeeeec-------cCCcCcccccccccccchhHHHHHHHHHHHHHHHH
Q 018674 237 FYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN-------ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ 309 (352)
Q Consensus 237 ~~~~~lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~-------~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~ 309 (352)
+++.+++++++++++||+|++||||||||+| .+|+++|+|+|+|||||||+|||||++++|+++++
T Consensus 216 -------~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~ 288 (431)
T 3din_C 216 -------WIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIAS 288 (431)
T ss_dssp -------HHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHH
Confidence 1566778888899999999999999999987 35789999999999999999999999999999988
Q ss_pred HH
Q 018674 310 LM 311 (352)
Q Consensus 310 ~l 311 (352)
++
T Consensus 289 ~~ 290 (431)
T 3din_C 289 IT 290 (431)
T ss_dssp SS
T ss_pred Hc
Confidence 66
No 8
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=2.5e-65 Score=512.49 Aligned_cols=282 Identities=17% Similarity=0.268 Sum_probs=224.2
Q ss_pred ccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hHHHHHHHh-hc--CcccchhccchHHHhHHHHHHHh
Q 018674 27 KVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL-AS--NRGTVMELGITPIVTSGLVMQLL 96 (352)
Q Consensus 27 ~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~-------~~~~l~~i~-a~--~~~SlfsLGI~PyItAsII~QLL 96 (352)
.+|+|||++||++++++||+|+|||+||+|.++.+| .+.++.+++ |+ +|+|+|||||+||||||||||||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL 88 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLL 88 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHH
Confidence 589999999999999999999999999999986532 233444554 44 89999999999999999999999
Q ss_pred ccc--chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCccccchhHHHHHHHHHHHHHHHHHHHH
Q 018674 97 AGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY-----GSVNQLGVGNAILIIVQLCFAGIIVICLD 169 (352)
Q Consensus 97 ~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~-----~~~~~~~~~~~~~~vl~L~aGs~~v~wL~ 169 (352)
+.. ++++++||+|+||||++++|||+|+++|++||.+++.+... +...+.+..+.++++++|++|++++||||
T Consensus 89 ~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~ 168 (435)
T 3j01_A 89 TVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLG 168 (435)
T ss_dssp HHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 99999999999999999999999999999999999876422 11223445567889999999999999999
Q ss_pred HhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHH
Q 018674 170 ELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLL 249 (352)
Q Consensus 170 e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~ 249 (352)
|+||| ||+|||+|++|++||++++++++.+..... .. ...+. ..+ ++.++
T Consensus 169 E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~--~~-~~~~~-~~~-------------------------l~~~~ 218 (435)
T 3j01_A 169 EQITE-RGIGNGISIIIFAGIVAGLPPAIAHTIEQA--RQ-GDLHF-LVL-------------------------LLVAV 218 (435)
T ss_dssp HHSTT-SCCSSSHHHHHHHHHHHHSSTTSSSCCCSS--SS-TTSSS-HHH-------------------------HHHHH
T ss_pred HHHHh-cCcccccHHHHHHHHHHHHHHHHHHHHHHH--hc-ccchH-HHH-------------------------HHHHH
Confidence 99999 999999999999999999955444332110 00 00111 111 45567
Q ss_pred HHHHHHHHHHhhcccEEEEeeeeec-c------CCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHH
Q 018674 250 ATVLIFLIVIYFQGFRVVLPVRSKN-A------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVN 322 (352)
Q Consensus 250 ~~l~~~~~~v~~~~~~~rIPi~~~~-~------~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~ 322 (352)
+++++++++||+|++||||||||+| + +|+++|+|+|+|||||||+|||||++++|+++++++.+. +.+.|.+
T Consensus 219 ~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~-~~~~~~~ 297 (435)
T 3j01_A 219 LVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGG-TGWNWLT 297 (435)
T ss_dssp HHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSC-CCSSCCS
T ss_pred HHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCC-cchhHHH
Confidence 7788889999999999999999986 3 468999999999999999999999999999999876331 1113444
Q ss_pred hhhhccccccCCCccccceeEEE
Q 018674 323 LLGKWKESEYSGGQYVPVGGIAY 345 (352)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~l~y 345 (352)
.+..|++++ +|++.++|
T Consensus 298 ~~~~~l~~~------~~~~~~~y 314 (435)
T 3j01_A 298 TISLYLQPG------QPLYVLLY 314 (435)
T ss_dssp SSSCCCCSS------GGGGTHHH
T ss_pred HHHHHcCCC------CcHHHHHH
Confidence 455555443 46666655
No 9
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=11.77 E-value=1.1e+02 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.2
Q ss_pred hhhhccccHHHHHHHHHHHHHH
Q 018674 101 IIEVDNNVREDRALLNGAQKLL 122 (352)
Q Consensus 101 l~~l~~~~~~gr~k~~~~tr~l 122 (352)
++++++.||--..|++..||.+
T Consensus 16 le~lq~sgevp~~KL~aLq~VL 37 (53)
T 1zl8_A 16 MEHVQKTGEVNNAKLASLQQVL 37 (53)
T ss_dssp HHHHGGGSSSTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 3577888888889999999876
No 10
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=10.61 E-value=2.6e+02 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=18.7
Q ss_pred HHhhhhccCcCcchHHHHHHHHHHHhh
Q 018674 169 DELLQKGYGLGSGISLFIATNICENII 195 (352)
Q Consensus 169 ~e~it~g~GiGnGiSLiI~~gI~~~l~ 195 (352)
.|.... .| +|.|++|+++++-+..
T Consensus 424 p~~l~~-~g--gGTslLI~VgV~~~~~ 447 (482)
T 3mp7_A 424 ADFLGA-LG--TGTGILLTVGILYRFY 447 (482)
T ss_dssp HHHHTC-SS--CSHHHHHHHHHHHHHH
T ss_pred HHHHhc-cC--CceeeeeeHHHHHHHH
Confidence 466654 55 7999999999988874
Done!